Query psy4641
Match_columns 229
No_of_seqs 221 out of 1665
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:01:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i8d_A Riboflavin synthase; ri 100.0 4.5E-81 1.5E-85 542.2 20.7 195 1-200 1-196 (213)
2 1kzl_A Riboflavin synthase; bi 100.0 9.2E-81 3.2E-85 538.6 21.9 200 1-206 1-202 (208)
3 3a35_A Lumazine protein, LUMP; 100.0 3.4E-78 1.2E-82 516.5 16.6 188 1-194 1-189 (190)
4 3ddy_A Lumazine protein, LUMP; 100.0 2.2E-75 7.7E-80 497.7 18.0 182 1-184 1-182 (186)
5 3ddy_A Lumazine protein, LUMP; 100.0 2.9E-28 9.9E-33 207.4 10.7 86 1-86 97-182 (186)
6 3a35_A Lumazine protein, LUMP; 99.9 5.1E-28 1.7E-32 206.5 11.2 88 1-88 97-185 (190)
7 1i8d_A Riboflavin synthase; ri 99.9 1.3E-27 4.5E-32 207.1 8.6 88 1-88 98-186 (213)
8 1kzl_A Riboflavin synthase; bi 99.9 7.2E-27 2.5E-31 201.8 9.6 88 1-88 98-186 (208)
9 3h43_A Proteasome-activating n 63.9 9 0.00031 27.9 4.4 36 22-57 41-77 (85)
10 2wg5_A General control protein 51.1 18 0.00061 27.3 4.3 37 22-58 60-97 (109)
11 3vo2_A Putative uncharacterize 48.9 38 0.0013 28.9 6.6 78 8-87 34-146 (310)
12 1fnb_A Ferredoxin-NADP+ reduct 41.1 43 0.0015 28.6 5.6 79 8-88 38-151 (314)
13 1ep3_B Dihydroorotate dehydrog 40.6 68 0.0023 26.5 6.7 79 9-88 7-98 (262)
14 4fk8_A Ferredoxin--NADP reduct 38.7 69 0.0024 26.4 6.5 77 9-87 21-110 (271)
15 3ecy_A CG4584-PA, isoform A (b 37.9 24 0.00082 28.6 3.3 56 121-180 66-125 (160)
16 2qdx_A Ferredoxin reductase; o 37.7 1.2E+02 0.0042 24.6 7.8 75 9-85 5-91 (257)
17 3lo8_A Ferredoxin--NADP reduct 37.6 88 0.003 26.4 7.1 79 8-88 29-148 (311)
18 3htn_A Putative DNA binding pr 37.4 26 0.0009 27.6 3.4 25 90-114 104-128 (149)
19 2pia_A Phthalate dioxygenase r 36.9 1E+02 0.0035 26.4 7.4 80 9-88 10-102 (321)
20 2bgi_A Ferredoxin-NADP(H) redu 36.3 1.1E+02 0.0037 25.3 7.4 76 8-85 17-105 (272)
21 2eix_A NADH-cytochrome B5 redu 36.2 86 0.003 25.2 6.6 79 9-87 13-105 (243)
22 2pls_A CBS domain protein; APC 36.0 38 0.0013 23.8 3.8 24 36-59 54-77 (86)
23 3lae_A UPF0053 protein HI0107; 35.4 40 0.0014 23.5 3.8 25 35-59 49-73 (81)
24 3vo2_A Putative uncharacterize 34.8 75 0.0026 27.0 6.2 76 105-183 34-144 (310)
25 1krh_A Benzoate 1,2-dioxygenas 34.2 1E+02 0.0035 26.4 7.0 80 8-87 109-200 (338)
26 2p4p_A Hypothetical protein HD 32.6 46 0.0016 23.3 3.8 24 36-59 52-75 (86)
27 2r6h_A NADH:ubiquinone oxidore 32.1 1.2E+02 0.0041 25.0 6.9 36 8-44 10-47 (290)
28 2bmw_A Ferredoxin--NADP reduct 31.1 1.2E+02 0.0041 25.4 6.9 80 8-88 22-137 (304)
29 2vb2_X Copper protein, cation 30.7 1.5E+02 0.0051 21.3 6.8 40 5-44 15-70 (88)
30 1fnb_A Ferredoxin-NADP+ reduct 30.3 82 0.0028 26.7 5.7 76 105-183 38-148 (314)
31 2oai_A Hemolysin; PFAM03471, x 29.9 53 0.0018 23.5 3.8 24 36-59 62-85 (94)
32 2o3g_A Putative protein; APC85 29.4 55 0.0019 23.2 3.8 24 36-59 60-83 (92)
33 3llb_A Uncharacterized protein 29.2 44 0.0015 23.3 3.2 24 35-58 49-72 (83)
34 2bgi_A Ferredoxin-NADP(H) redu 28.8 1.4E+02 0.0049 24.6 6.8 77 104-183 16-105 (272)
35 3lqw_A Deoxyuridine 5'-triphos 28.5 21 0.0007 29.1 1.4 57 120-180 69-129 (163)
36 2pli_A Uncharacterized protein 27.5 48 0.0017 23.5 3.2 23 36-58 59-81 (91)
37 2b5o_A FNR, ferredoxin--NADP r 27.5 1.2E+02 0.004 27.2 6.4 80 8-88 123-239 (402)
38 3hwu_A Putative DNA-binding pr 27.0 51 0.0017 25.8 3.5 24 89-112 99-123 (147)
39 2gpj_A Siderophore-interacting 26.9 1.4E+02 0.0047 24.6 6.4 79 9-88 10-103 (252)
40 3so2_A Putative uncharacterize 26.4 16 0.00054 29.1 0.3 56 121-180 51-110 (146)
41 2nqw_A CBS domain protein; PFA 26.2 50 0.0017 23.5 3.0 23 36-58 61-83 (93)
42 4drs_A Pyruvate kinase; glycol 26.1 67 0.0023 30.8 4.7 55 23-85 148-204 (526)
43 3ded_A Probable hemolysin; str 25.6 67 0.0023 24.0 3.8 25 35-59 80-104 (113)
44 2e28_A Pyruvate kinase, PK; al 24.7 96 0.0033 30.0 5.5 57 21-85 102-162 (587)
45 2qcp_X Cation efflux system pr 24.2 1.9E+02 0.0064 20.3 6.9 40 5-44 7-62 (80)
46 3kew_A DHHA1 domain protein; s 24.2 1.3E+02 0.0044 25.4 5.7 74 104-189 15-91 (241)
47 2r2z_A Hemolysin; APC85144, en 24.0 65 0.0022 22.8 3.3 23 36-58 57-81 (93)
48 3f4f_A Deoxyuridine 5'-triphos 22.5 22 0.00075 29.0 0.5 44 121-165 73-120 (167)
49 1umk_A B5R, NADH-cytochrome B5 22.4 1.5E+02 0.0052 24.2 5.8 80 8-87 17-119 (275)
50 3p48_A Deoxyuridine 5'-triphos 22.4 21 0.00073 28.3 0.4 44 121-165 53-100 (147)
51 3lo8_A Ferredoxin--NADP reduct 22.4 1.9E+02 0.0066 24.2 6.6 76 105-183 29-145 (311)
52 3k2z_A LEXA repressor; winged 22.1 2.9E+02 0.01 21.7 7.5 66 75-145 123-188 (196)
53 2cnd_A NADH-dependent nitrate 21.9 1.8E+02 0.006 23.7 6.1 80 8-87 13-115 (270)
54 2rc5_A Ferredoxin-NADP reducta 21.6 1.5E+02 0.0052 24.9 5.8 79 9-88 23-153 (314)
55 4he6_A Peptidase family U32; u 21.6 2.1E+02 0.0072 19.9 5.7 42 8-55 8-54 (89)
56 2ol1_A Deoxyuridine 5'-triphos 21.5 21 0.0007 28.3 0.1 44 121-165 54-100 (147)
57 1fdr_A Flavodoxin reductase; f 20.4 1.9E+02 0.0064 23.2 5.9 74 9-85 6-91 (248)
58 1f7d_A POL polyprotein; eight 20.3 18 0.00062 28.2 -0.5 56 121-180 40-98 (136)
No 1
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=100.00 E-value=4.5e-81 Score=542.19 Aligned_cols=195 Identities=47% Similarity=0.805 Sum_probs=187.7
Q ss_pred CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ 80 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd 80 (229)
|||||||++|+|.++++.+++++++|++|+.+++++++|||||||||||||+++.++.|+|++|||||++|||+.|++||
T Consensus 1 MFTGiV~~vG~V~~i~~~~~~~~l~i~~~~~~~~~l~~g~SIAvnGvcLTV~~v~~~~F~vdvipETl~~T~Lg~l~~Gd 80 (213)
T 1i8d_A 1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGD 80 (213)
T ss_dssp CBCSCCCEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTC
T ss_pred CCCEEeceEEEEEEEEECCCcEEEEEEEChHHhccCCCCcEEEECCEEeeEEEEcCCEEEEEEeHHHHhhcccccCCCCC
Confidence 99999999999999999999999999999777899999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccch-hccceeeeccEEEceeeeeeeeEeCcEEEE
Q psy4641 81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKS-LMKYVFYKGYVAIDGISLTIGKVFEDYFYV 159 (229)
Q Consensus 81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~-~~~~iv~KGsIavdGvSLTV~~v~~~~f~v 159 (229)
+|||||||++|||+|||+||||||++|+|.++++.+++++++|++| ++ +++|+++|||||||||||||+++.+++|+|
T Consensus 81 ~VNLEral~~g~rlgGH~VsGHVDg~g~i~~~~~~~~~~~~~~~~p-~~~l~~yiv~KGsIavdGvSLTV~~v~~~~F~v 159 (213)
T 1i8d_A 81 WVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQ-DSQLMKYILYKGFIGIDGISLTVGEVTPTRFCV 159 (213)
T ss_dssp EEEEEECCBTTSCCSSCCBCCCCCEEEEEEEEEEETTEEEEEEEES-CGGGGGGCCTTCEEEETTEEEECCSBCSSEEEE
T ss_pred EEEeCcCCCCCCcccCeeEEEEeeEEEEEEEEEEcCCeEEEEEEeC-HHHhHhhceeCCeEEEccEEEEEEEecCCEEEE
Confidence 9999999999999999999999999999999999999999999999 88 999999999999999999999999999999
Q ss_pred EeehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHh
Q psy4641 160 HLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLK 200 (229)
Q Consensus 160 ~lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~ 200 (229)
+|||||+++|||+.+|+||+||||+|+ ++||++|+++
T Consensus 160 ~lIP~T~~~T~l~~~~~Gd~VNlE~D~----~~kyv~~~~~ 196 (213)
T 1i8d_A 160 HLIPETLERTTLGKKKLGARVNIEIDP----QTQAVVDTVE 196 (213)
T ss_dssp EECHHHHHHSSGGGCCTTCEEEEEECH----HHHHHHHHHH
T ss_pred EEchHHHhhCccccCCCCCEEEEeEch----HHHHHHHHHH
Confidence 999999999999999999999999997 5555555544
No 2
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=100.00 E-value=9.2e-81 Score=538.58 Aligned_cols=200 Identities=36% Similarity=0.549 Sum_probs=191.7
Q ss_pred CcceeeeceEEEEEEEEcCC-eEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYND-FKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD 79 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~-~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G 79 (229)
|||||||++|+|.++++.++ +++++|+ |+.+++++++|||||||||||||+++.++.|+|++|||||++|||+.|++|
T Consensus 1 MFTGiVe~vG~V~~i~~~~~~~~~l~i~-~~~~~~~l~~g~SIAvnGvcLTV~~~~~~~F~vdvipETl~~T~Lg~l~~G 79 (208)
T 1kzl_A 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIE-APQILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAG 79 (208)
T ss_dssp CBCSCCCEEEEEEEEEEETTTEEEEEEE-CGGGCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTT
T ss_pred CCCEEeceEEEEEEEEECCCceEEEEEe-chHHhcccCCCCEEEECCEEeeEEEEcCCEEEEEEeHHHHhhccccccCCC
Confidence 99999999999999999998 9999999 666789999999999999999999999999999999999999999999999
Q ss_pred CeeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEe-ccchhccceeeeccEEEceeeeeeeeEeCcEEE
Q psy4641 80 QFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQM-TNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFY 158 (229)
Q Consensus 80 d~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~-p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~ 158 (229)
|+|||||||++|||+|||+||||||++|+|.++++.+++++++|++ | +++++|+++|||||||||||||+++.+++|+
T Consensus 80 d~VNLEral~~g~rlgGH~VsGHVDg~g~i~~~~~~~~~~~~~~~~~p-~~l~~yiv~KGsIaidGiSLTV~~v~~~~F~ 158 (208)
T 1kzl_A 80 DPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRD-PFVLKYIVYKGYIALDGTSLTITHVDDSTFS 158 (208)
T ss_dssp CEEEEEECCCCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESS-GGGGGGCCTTCEEEETTEEEEEEEECSSCEE
T ss_pred CEEEeccCCCCCCcccceEeccEEeeeeEEEEEEecCCcEEEEEEeCC-HHHHhhhhhCCEEEEeeEEeEEEeEcCCEEE
Confidence 9999999999999999999999999999999999999999999999 9 9999999999999999999999999999999
Q ss_pred EEeehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHhhccccc
Q psy4641 159 VHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNL 206 (229)
Q Consensus 159 v~lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~~~~ 206 (229)
|+|||||+++|||+.+|+||+||||+|+ ++||++|++...+++.
T Consensus 159 v~lIP~T~~~T~l~~~~~Gd~VNlE~D~----~~kyv~~~~~~~~~~~ 202 (208)
T 1kzl_A 159 IMMISYTQSKVIMAKKNVGDLVNVEVDQ----IGKYTEKLVEAHIADW 202 (208)
T ss_dssp EEECHHHHTTSGGGGCCTTCEEEEEECT----HHHHHHHHHHHHTTTC
T ss_pred EEEehhhHhhcccccCCCCCEEEEeEeh----HHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999997 7888888876555443
No 3
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=100.00 E-value=3.4e-78 Score=516.50 Aligned_cols=188 Identities=27% Similarity=0.479 Sum_probs=179.6
Q ss_pred CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ 80 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd 80 (229)
|||||||++|+|.++++.++++.+++++|+.+++++++|||||||||||||+++.++.|+|+ |||||++|||+.|++||
T Consensus 1 MFTGiV~~~G~V~~i~~~~~~~~~~i~i~~~~~~~l~~g~SIAvnGvcLTV~~v~~~~F~v~-ipeTl~~T~Lg~l~~Gd 79 (190)
T 3a35_A 1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVYFD-IDQAINTTTFRELEVGN 79 (190)
T ss_dssp CBCSCCCEEEEEEEEEECSSCEEEEEECCHHHHHTCCTTCEEEETTEEEEEEEEETTEEEEE-ESTTTTTSSGGGCCTTC
T ss_pred CCCEEeCeEEEEEEEEECCCcEEEEEEECchhhccCCCCCEEEECCEEeeEEEEcCCEEEEe-cHHHHhhcccccCCCCC
Confidence 99999999999999999999888888888777799999999999999999999999999999 99999999999999999
Q ss_pred eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEE
Q psy4641 81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVH 160 (229)
Q Consensus 81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~ 160 (229)
+|||||||++|||+|||+||||||++|+|.++++.+++++++|++| +++++|+++|||||||||||||+++.+++|+|+
T Consensus 80 ~VNLEral~~g~rlgGH~v~GHVdg~g~i~~~~~~~~~~~~~~~~p-~~~~~yi~~KGsIavdGvSLTV~~v~~~~f~v~ 158 (190)
T 3a35_A 80 KVNLEVRPEFGSLLGKGALTGNIKGVATVDNITEEEDRLKVYIKIP-KDLIENILSEDHIGINGVSHSIEEISDDIIFIN 158 (190)
T ss_dssp EEEEECCCSSCCCCCSSCBCSCCCEEEEEEEEEEETTEEEEEEECC-TTSCSCCCTTSEEEETTEEEECCEEETTEEEEE
T ss_pred EEEeCcCCcCCCccCCeeEEEEEeEEEEEEEEEEcCCeEEEEEEeC-HHHHhcCCcCCEEEECCEEEEEEEecCCEEEEE
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eehhhHhhccCCCCCCCCEeEEc-ccCccchHHHH
Q psy4641 161 LIPETMEKTTMSKKAVGDALNIE-VDSQTQVIVNT 194 (229)
Q Consensus 161 lIP~Tl~~T~l~~~k~Gd~VNiE-~D~~t~~i~ky 194 (229)
|||||+++|||+.+|+||+|||| +|+ ++||
T Consensus 159 lIP~T~~~T~l~~~~~Gd~VNlE~~D~----~~ky 189 (190)
T 3a35_A 159 YPKNLSITTNLGTLEKGSDVNVETLNV----SNEW 189 (190)
T ss_dssp EETTHHHHSGGGGCCTTCEEEEEECC---------
T ss_pred EeHHHHhhcccccCcCCCEEEEecccc----cccc
Confidence 99999999999999999999999 997 6776
No 4
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=100.00 E-value=2.2e-75 Score=497.66 Aligned_cols=182 Identities=27% Similarity=0.429 Sum_probs=171.0
Q ss_pred CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ 80 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd 80 (229)
||||||+++|+|.++++.+++.+++|++|+.+++++++|||||||||||||++++++.|+|++ ||||++|||+.|++||
T Consensus 1 MFTGiVe~vG~V~~i~~~~~~~~l~i~~~~~~~~~~~~GdSIAvnGvCLTV~~~~~~~f~vdv-~ETl~~T~Lg~l~~G~ 79 (186)
T 3ddy_A 1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVYFDI-DQALGTTTFDGLKEGD 79 (186)
T ss_dssp CBCSCCCEEEEEEEEEECSSCEEEEEECCTTTGGGCCTTCEEEETTEEEEEEEEETTEEEEEE-CTTTTTSSGGGCCTTC
T ss_pred CCCeeeCeEEEEEEEEECCCcEEEEEEeChHHhccCCCCCeEEEeeEEEEEEEEcCCEEEEEh-HHhhhhCchhhcCCCC
Confidence 999999999999999999999999999998888999999999999999999999999999999 9999999999999999
Q ss_pred eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEE
Q psy4641 81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVH 160 (229)
Q Consensus 81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~ 160 (229)
+|||||||++|||+|||+||||||++|+|.++++.+++++++|++| +++++|+++|||||||||||||+++.+++|+|+
T Consensus 80 ~VNLEral~~~~rlgGH~vsGHVdg~g~i~~i~~~~~~~~~~i~~p-~~l~~~i~~KgSIavdGvSLTV~~v~~~~f~v~ 158 (186)
T 3ddy_A 80 QVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAGFSVLIDIP-KGLAENLTVKDDIGIDGISLPITDMSDSIITLN 158 (186)
T ss_dssp EEEEECCC---------CBCSCCCEEEEEEEEECCSSEEEEEEECC-TTTCSCCCTTCEEEETTEEEECCEEETTEEEEE
T ss_pred EEEECCCCCCCCccCCeeEEEEEeEEEEEEEEEECCCeEEEEEEcC-HHHhhccccCcEEEEEeEEEEEEeecCCEEEEE
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eehhhHhhccCCCCCCCCEeEEcc
Q psy4641 161 LIPETMEKTTMSKKAVGDALNIEV 184 (229)
Q Consensus 161 lIP~Tl~~T~l~~~k~Gd~VNiE~ 184 (229)
|||||+++|||+.+++||+||||+
T Consensus 159 lIp~Tl~~T~l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 159 YSRDLLASTNIASLAKDVKVNVEI 182 (186)
T ss_dssp EEGGGGGTSSGGGCCTTCEEEEEE
T ss_pred EcHHHHhhcccccCccCCEEEEEE
Confidence 999999999999999999999997
No 5
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=99.95 E-value=2.9e-28 Score=207.43 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=84.8
Q ss_pred CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ 80 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd 80 (229)
|||||||++|+|.++++.+++++++|++|+.+++|+.+|||||+|||||||++++++.|+|++||||+++|||+.+++||
T Consensus 97 ~vsGHVdg~g~i~~i~~~~~~~~~~i~~p~~l~~~i~~KgSIavdGvSLTV~~v~~~~f~v~lIp~Tl~~T~l~~~~~Gd 176 (186)
T 3ddy_A 97 GLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDV 176 (186)
T ss_dssp CBCSCCCEEEEEEEEECCSSEEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEETTEEEEEEEGGGGGTSSGGGCCTTC
T ss_pred eEEEEEeEEEEEEEEEECCCeEEEEEEcCHHHhhccccCcEEEEEeEEEEEEeecCCEEEEEEcHHHHhhcccccCccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecc
Q psy4641 81 FVNLER 86 (229)
Q Consensus 81 ~VNLEr 86 (229)
+||||.
T Consensus 177 ~VNlE~ 182 (186)
T 3ddy_A 177 KVNVEI 182 (186)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 6
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=99.95 E-value=5.1e-28 Score=206.52 Aligned_cols=88 Identities=26% Similarity=0.344 Sum_probs=85.5
Q ss_pred CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ 80 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd 80 (229)
|+|||||++|+|.++++.+++++++|++|+.+++|+.+||||||||+||||+++.++.|+|.+||||+++|||+.+++||
T Consensus 97 ~v~GHVdg~g~i~~~~~~~~~~~~~~~~p~~~~~yi~~KGsIavdGvSLTV~~v~~~~f~v~lIP~T~~~T~l~~~~~Gd 176 (190)
T 3a35_A 97 ALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEISDDIIFINYPKNLSITTNLGTLEKGS 176 (190)
T ss_dssp CBCSCCCEEEEEEEEEEETTEEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEETTEEEEEEETTHHHHSGGGGCCTTC
T ss_pred eEEEEEeEEEEEEEEEEcCCeEEEEEEeCHHHHhcCCcCCEEEECCEEEEEEEecCCEEEEEEeHHHHhhcccccCcCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeec-cCC
Q psy4641 81 FVNLE-RSA 88 (229)
Q Consensus 81 ~VNLE-ral 88 (229)
+|||| .++
T Consensus 177 ~VNlE~~D~ 185 (190)
T 3a35_A 177 DVNVETLNV 185 (190)
T ss_dssp EEEEEECC-
T ss_pred EEEEecccc
Confidence 99999 876
No 7
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=99.94 E-value=1.3e-27 Score=207.12 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=85.9
Q ss_pred CcceeeeceEEEEEEEEcCCeEEEEEEcCCC-CCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSD-LLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD 79 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~-~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G 79 (229)
|+|||||++|+|.++++.+++++++|++|+. +++|+.+||||||||+||||+++.++.|+|.+||||+++|||+.+++|
T Consensus 98 ~VsGHVDg~g~i~~~~~~~~~~~~~~~~p~~~l~~yiv~KGsIavdGvSLTV~~v~~~~F~v~lIP~T~~~T~l~~~~~G 177 (213)
T 1i8d_A 98 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLG 177 (213)
T ss_dssp CBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHSSGGGCCTT
T ss_pred eEEEEeeEEEEEEEEEEcCCeEEEEEEeCHHHhHhhceeCCeEEEccEEEEEEEecCCEEEEEEchHHHhhCccccCCCC
Confidence 6899999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccCC
Q psy4641 80 QFVNLERSA 88 (229)
Q Consensus 80 d~VNLEral 88 (229)
|+||||.++
T Consensus 178 d~VNlE~D~ 186 (213)
T 1i8d_A 178 ARVNIEIDP 186 (213)
T ss_dssp CEEEEEECH
T ss_pred CEEEEeEch
Confidence 999999875
No 8
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=99.94 E-value=7.2e-27 Score=201.82 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=85.8
Q ss_pred CcceeeeceEEEEEEEEcCCeEEEEEEc-CCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWF-PSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD 79 (229)
Q Consensus 1 MFTGhId~~G~I~~i~~~~~~~~l~i~~-p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G 79 (229)
+++||||++|+|.++++.+++++++|++ |+.+++|+.+|||||+||+||||+++.++.|+|.+||||+++|||+.+++|
T Consensus 98 ~VsGHVDg~g~i~~~~~~~~~~~~~~~~~p~~l~~yiv~KGsIaidGiSLTV~~v~~~~F~v~lIP~T~~~T~l~~~~~G 177 (208)
T 1kzl_A 98 FVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVG 177 (208)
T ss_dssp CBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTTSGGGGCCTT
T ss_pred EeccEEeeeeEEEEEEecCCcEEEEEEeCCHHHHhhhhhCCEEEEeeEEeEEEeEcCCEEEEEEehhhHhhcccccCCCC
Confidence 5899999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccCC
Q psy4641 80 QFVNLERSA 88 (229)
Q Consensus 80 d~VNLEral 88 (229)
|+||||.++
T Consensus 178 d~VNlE~D~ 186 (208)
T 1kzl_A 178 DLVNVEVDQ 186 (208)
T ss_dssp CEEEEEECT
T ss_pred CEEEEeEeh
Confidence 999999876
No 9
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=63.87 E-value=9 Score=27.85 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=27.3
Q ss_pred EEEEEEcCCCC-CCCCccCCcEEEcceeeeeeEEeCC
Q psy4641 22 KSMTIWFPSDL-LDGISISCSVAINGVCLSVTKIEGN 57 (229)
Q Consensus 22 ~~l~i~~p~~~-~~~l~~g~SIAVnGvcLTV~~i~~~ 57 (229)
-++.+.+.+.. .+.+++|++||+|--|++|.++-+.
T Consensus 41 ~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 41 PSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp SEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred CeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 35566665543 3589999999999999999988653
No 10
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=51.10 E-value=18 Score=27.29 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=27.9
Q ss_pred EEEEEEcCCCC-CCCCccCCcEEEcceeeeeeEEeCCE
Q psy4641 22 KSMTIWFPSDL-LDGISISCSVAINGVCLSVTKIEGNY 58 (229)
Q Consensus 22 ~~l~i~~p~~~-~~~l~~g~SIAVnGvcLTV~~i~~~~ 58 (229)
.++.+.+.+.. .+.|++|.+||+|--+++|..+-+..
T Consensus 60 ~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e 97 (109)
T 2wg5_A 60 PKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTS 97 (109)
T ss_dssp CEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC--
T ss_pred CEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCC
Confidence 45566665544 36799999999999999999987653
No 11
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=48.87 E-value=38 Score=28.93 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=51.6
Q ss_pred ceEEEEEEEEcC-C-----eEEEEEEcCCCCCCCCccCCcEEEc--ce----------eeeeeEEe------CCEEEEEE
Q psy4641 8 GIGKVSAVFSYN-D-----FKSMTIWFPSDLLDGISISCSVAIN--GV----------CLSVTKIE------GNYISFDV 63 (229)
Q Consensus 8 ~~G~I~~i~~~~-~-----~~~l~i~~p~~~~~~l~~g~SIAVn--Gv----------cLTV~~i~------~~~f~v~l 63 (229)
..++|.++++.. + .++++++.+.. ++ ..+|.+|.+. |+ .+|+.+.. ++.+++.+
T Consensus 34 ~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~-~~-~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~V 111 (310)
T 3vo2_A 34 YVGRCLSNTRITGDDAPGETWHMVFSTEGE-IP-YREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCV 111 (310)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTTC-CC-CCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEE
T ss_pred EEEEEEEEEEccCCCCCccEEEEEEeCCCC-Cc-ccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEE
Confidence 467888887753 2 78899987654 33 7899999883 32 56777663 35566555
Q ss_pred eHh-----------HHhhccCCCCCCCCeeeeccC
Q psy4641 64 INE-----------TLKITNLKAVAVDQFVNLERS 87 (229)
Q Consensus 64 ipe-----------TL~~TtL~~lk~Gd~VNLEra 87 (229)
-.. =.-..-|.++++||.|.++.+
T Consensus 112 k~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP 146 (310)
T 3vo2_A 112 KRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGP 146 (310)
T ss_dssp ECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEE
T ss_pred EEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEec
Confidence 322 223344566999999998754
No 12
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=41.06 E-value=43 Score=28.55 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=51.4
Q ss_pred ceEEEEEEEEcC------CeEEEEEEcCCCCCCCCccCCcEEEc-------c-----eeeeeeEEe------CCEEEEEE
Q psy4641 8 GIGKVSAVFSYN------DFKSMTIWFPSDLLDGISISCSVAIN-------G-----VCLSVTKIE------GNYISFDV 63 (229)
Q Consensus 8 ~~G~I~~i~~~~------~~~~l~i~~p~~~~~~l~~g~SIAVn-------G-----vcLTV~~i~------~~~f~v~l 63 (229)
..++|.+++... +.++++++.|.. + ...+|..|.+. | =.+|+.+.. .+.+.+.+
T Consensus 38 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~-~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~V 115 (314)
T 1fnb_A 38 YVGRCLLNTKITGDDAPGETWHMVFSHEGE-I-PYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCV 115 (314)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTTC-C-CCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEE
T ss_pred EEEEEEEEEEecCCCCCCcEEEEEEecCCC-C-CcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEE
Confidence 357888888765 688899988754 3 45899999873 3 257777653 35566554
Q ss_pred eHh-----------HHhhccCCCCCCCCeeeeccCC
Q psy4641 64 INE-----------TLKITNLKAVAVDQFVNLERSA 88 (229)
Q Consensus 64 ipe-----------TL~~TtL~~lk~Gd~VNLEral 88 (229)
-.. =.-..-|..+++||.|.++.+.
T Consensus 116 k~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~ 151 (314)
T 1fnb_A 116 KRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPV 151 (314)
T ss_dssp ECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEE
T ss_pred EEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEecc
Confidence 321 1112234458999999988654
No 13
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=40.61 E-value=68 Score=26.48 Aligned_cols=79 Identities=9% Similarity=-0.091 Sum_probs=52.8
Q ss_pred eEEEEEEEEc-CCeEEEEEEcCCCCCCCCccCCcEEEc--c------eeeeeeEEe--CCEEEEEEeH--hHHhhccCCC
Q psy4641 9 IGKVSAVFSY-NDFKSMTIWFPSDLLDGISISCSVAIN--G------VCLSVTKIE--GNYISFDVIN--ETLKITNLKA 75 (229)
Q Consensus 9 ~G~I~~i~~~-~~~~~l~i~~p~~~~~~l~~g~SIAVn--G------vcLTV~~i~--~~~f~v~lip--eTL~~TtL~~ 75 (229)
.++|.++++. ++..+++++.|.. .....+|..|.+. + =.+|+.+.. ++.+.+.+-. .-.-..-|.+
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~-~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~S~~l~~ 85 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLV-DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSK 85 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGG-GGCCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHHHT
T ss_pred ceEEEEEEEecCCEEEEEEEcCcc-cccCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEecCCchHHHHhc
Confidence 4677777654 5788999987652 2356889988874 1 357887775 4566666543 3233334568
Q ss_pred CCCCCeeeeccCC
Q psy4641 76 VAVDQFVNLERSA 88 (229)
Q Consensus 76 lk~Gd~VNLEral 88 (229)
+++||.|.+.-+.
T Consensus 86 l~~Gd~v~v~gP~ 98 (262)
T 1ep3_B 86 LESGAKVDVMGPL 98 (262)
T ss_dssp CCTTCEEEEEEEE
T ss_pred CCCCCEEEEEccc
Confidence 9999999998654
No 14
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=38.68 E-value=69 Score=26.38 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=49.6
Q ss_pred eEEEEEEEEc-CCeEEEEEEcCCCCCCCCccCCcEEEc----ce----eeeeeEEe-CCEEEEEEeHh--HHhhccCCCC
Q psy4641 9 IGKVSAVFSY-NDFKSMTIWFPSDLLDGISISCSVAIN----GV----CLSVTKIE-GNYISFDVINE--TLKITNLKAV 76 (229)
Q Consensus 9 ~G~I~~i~~~-~~~~~l~i~~p~~~~~~l~~g~SIAVn----Gv----cLTV~~i~-~~~f~v~lipe--TL~~TtL~~l 76 (229)
.++|.++++. ++.++++++.|..+ ...+|..|.+. |- .+|+.+.. ++.+.+.+... -.-..-|.++
T Consensus 21 ~~~V~~~~~~~~~~~~~~l~~~~~~--~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~~v~~~~~G~~s~~l~~l 98 (271)
T 4fk8_A 21 TATVLSVHHWTDTLFSFTCTRDQAL--RFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLEFFSIKVQNGPLTSRLQHL 98 (271)
T ss_dssp EEEEEEEEEEETTEEEEEECCCTTC--CCCTTCEEEEEEEETTEEEEEEEECCSCTTSSSEEEEEECCTTCTTHHHHTTC
T ss_pred eEEEEEEEEcCCCEEEEEEEcCCCC--CcCCCCEEEEEccCCCceeeeeEeccCCCCCCcEEEEEEEECCCchhhHHhcC
Confidence 4567777654 56788888876532 56789888773 42 45666653 34566555433 2223345689
Q ss_pred CCCCeeeec-cC
Q psy4641 77 AVDQFVNLE-RS 87 (229)
Q Consensus 77 k~Gd~VNLE-ra 87 (229)
++||.|.++ .+
T Consensus 99 ~~Gd~v~v~~gP 110 (271)
T 4fk8_A 99 KVGDPVLIGKKP 110 (271)
T ss_dssp CTTCEEEEESCC
T ss_pred CCCCEEEEecCC
Confidence 999999998 65
No 15
>3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric assembly, hydrolase; 1.88A {Drosophila melanogaster}
Probab=37.88 E-value=24 Score=28.58 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=34.5
Q ss_pred EEEEeccchhccceeeeccEEE-ceeeeeeeeEeCc---EEEEEeehhhHhhccCCCCCCCCEe
Q psy4641 121 MEIQMTNKSLMKYVFYKGYVAI-DGISLTIGKVFED---YFYVHLIPETMEKTTMSKKAVGDAL 180 (229)
Q Consensus 121 ~~i~~p~~~~~~~iv~KGsIav-dGvSLTV~~v~~~---~f~v~lIP~Tl~~T~l~~~k~Gd~V 180 (229)
+.+++| +.+..++.++-|.|. .|+.++..-++.+ .+.|.|+.++-+.- .+++||++
T Consensus 66 i~i~iP-~g~~~~i~pRSsla~k~Gi~v~~GvID~dYrGei~v~l~N~~~~~~---~I~~GdRI 125 (160)
T 3ecy_A 66 LQVQVP-EGSYGRVAPRSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSDVDF---EVKHGDRI 125 (160)
T ss_dssp EEEECC-TTCEEEEECC-------CEEEECEEECTTCCSCCEEEEEECSSSCE---EECTTCEE
T ss_pred cEEEcC-CCeEEEEEecccccccCCEEEeccCcCCCccCcEEEEEEeCCCCce---EECCCCEE
Confidence 567889 889999999999998 5999986666654 47788876542211 24566553
No 16
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=37.67 E-value=1.2e+02 Score=24.60 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=48.6
Q ss_pred eEEEEEEEEc-CCeEEEEEEcCCCCCCCCccCCcEEEc----c----eeeeeeEEeC-CEEEEEEeHh--HHhhccCCCC
Q psy4641 9 IGKVSAVFSY-NDFKSMTIWFPSDLLDGISISCSVAIN----G----VCLSVTKIEG-NYISFDVINE--TLKITNLKAV 76 (229)
Q Consensus 9 ~G~I~~i~~~-~~~~~l~i~~p~~~~~~l~~g~SIAVn----G----vcLTV~~i~~-~~f~v~lipe--TL~~TtL~~l 76 (229)
.++|.+++.. ++.++++++.|..+ ...+|..|.+. | =.+|+.+... +.+.+.+... -.-..-|..+
T Consensus 5 ~~~V~~~~~~~~~~~~l~l~~~~~~--~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~~i~~~~~G~~s~~l~~l 82 (257)
T 2qdx_A 5 TERVLSVHHWNDTLFSFKTTRNPGL--RFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHL 82 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCTTC--CCCTTCEEEEEEEETTEEEEEEEECCSCTTSSEEEEEEECCTTCTTHHHHTTC
T ss_pred EEEEEEEEEcCCCeEEEEEeCCCCC--ccCCCCEEEEEecCCCCceeeeeEeecCCCCCeEEEEEEEeCCCcchhHHHhC
Confidence 3567777654 56788888877543 47889988663 4 2456666543 4666655432 2222345679
Q ss_pred CCCCeeeec
Q psy4641 77 AVDQFVNLE 85 (229)
Q Consensus 77 k~Gd~VNLE 85 (229)
++||.|.+.
T Consensus 83 ~~Gd~v~v~ 91 (257)
T 2qdx_A 83 KEGDELMVS 91 (257)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEe
Confidence 999999997
No 17
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=37.57 E-value=88 Score=26.43 Aligned_cols=79 Identities=14% Similarity=0.017 Sum_probs=52.3
Q ss_pred ceEEEEEEEEc------CCeEEEEEEcCCCCCCCCccCCcEEEc--c------------eeeeeeEEe------CCEEEE
Q psy4641 8 GIGKVSAVFSY------NDFKSMTIWFPSDLLDGISISCSVAIN--G------------VCLSVTKIE------GNYISF 61 (229)
Q Consensus 8 ~~G~I~~i~~~------~~~~~l~i~~p~~~~~~l~~g~SIAVn--G------------vcLTV~~i~------~~~f~v 61 (229)
..++|.++++. ++.++++++.|..+ ...+|..|.+. | =.+|+.+.. ++.+++
T Consensus 29 ~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~--~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l 106 (311)
T 3lo8_A 29 FTATIVSVESLVGPKAPGETCHIVIDHGGNV--PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSL 106 (311)
T ss_dssp EEEEEEEEEECSCTTSSSCEEEEEEECTTSS--CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEE
T ss_pred eEEEEEeeEeccCCCCCCccEEEEEeCCCCC--cccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEE
Confidence 46788888876 47889999987543 57899988774 2 245666553 245666
Q ss_pred EEe---------------HhHHhhccCCCCCCCCeeeeccCC
Q psy4641 62 DVI---------------NETLKITNLKAVAVDQFVNLERSA 88 (229)
Q Consensus 62 ~li---------------peTL~~TtL~~lk~Gd~VNLEral 88 (229)
.+- |.=.-..-|.++++||.|.++.+.
T Consensus 107 ~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~ 148 (311)
T 3lo8_A 107 CVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPS 148 (311)
T ss_dssp EEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEE
T ss_pred EEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEecc
Confidence 553 222333445668999999988543
No 18
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=37.40 E-value=26 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.5
Q ss_pred CCceecceeeEEEEeEEEEEEEEEE
Q psy4641 90 MNTEVGGHFLSGHIIDVANVRAIQA 114 (229)
Q Consensus 90 ~gdrlgGH~V~GHVd~~~~i~~i~~ 114 (229)
-|..+|||++.|-|..+++|.=..-
T Consensus 104 ~G~v~gGHl~~g~V~~t~Ei~i~~~ 128 (149)
T 3htn_A 104 DYSALAGHLLSAIQNGAGEFVVEDY 128 (149)
T ss_dssp TSBEEEEEEEEEEEEEEEEEEEEEC
T ss_pred CCCEEeEEeCCCEEEEEEEEEEEEc
Confidence 4677899999999999999876543
No 19
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=36.86 E-value=1e+02 Score=26.38 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=52.7
Q ss_pred eEEEEEEEEc-CCeEEEEEEcCCCC-CCCCccCCcEEE---cc--eeeeeeEEeC--CEEEEEEe--HhHH-hhccCC-C
Q psy4641 9 IGKVSAVFSY-NDFKSMTIWFPSDL-LDGISISCSVAI---NG--VCLSVTKIEG--NYISFDVI--NETL-KITNLK-A 75 (229)
Q Consensus 9 ~G~I~~i~~~-~~~~~l~i~~p~~~-~~~l~~g~SIAV---nG--vcLTV~~i~~--~~f~v~li--peTL-~~TtL~-~ 75 (229)
..+|.++++. ++.++++++.|... +....+|..|.+ || =++|+.+... +.+.+.+- |.-. -...|. .
T Consensus 10 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g~~R~ySi~s~~~~~~~l~i~Vk~~~~G~g~S~~L~~~ 89 (321)
T 2pia_A 10 RLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFIDD 89 (321)
T ss_dssp EEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTSCEEEEECCSCTTCCSEEEEEEECCTTSCSHHHHHHHS
T ss_pred EEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCCCcEEEEeCCCCCCCCeEEEEEEEecCCcchhHHHHhc
Confidence 3567777654 57889999987542 346789999888 34 3677766543 46666664 3222 223355 7
Q ss_pred CCCCCeeeeccCC
Q psy4641 76 VAVDQFVNLERSA 88 (229)
Q Consensus 76 lk~Gd~VNLEral 88 (229)
+++||.|.+..+.
T Consensus 90 l~~Gd~v~v~gP~ 102 (321)
T 2pia_A 90 TSEGDAVEVSLPR 102 (321)
T ss_dssp CCTTCEEEECCCB
T ss_pred CCCCCEEEEeCCc
Confidence 8999999998763
No 20
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=36.32 E-value=1.1e+02 Score=25.33 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=49.8
Q ss_pred ceEEEEEEEEc-CCeEEEEEEcCCCCCCCCccCCcEEE-----cc----eeeeeeEEeC-CEEEEEEeHh--HHhhccCC
Q psy4641 8 GIGKVSAVFSY-NDFKSMTIWFPSDLLDGISISCSVAI-----NG----VCLSVTKIEG-NYISFDVINE--TLKITNLK 74 (229)
Q Consensus 8 ~~G~I~~i~~~-~~~~~l~i~~p~~~~~~l~~g~SIAV-----nG----vcLTV~~i~~-~~f~v~lipe--TL~~TtL~ 74 (229)
..++|.+++.. ++.++++++.|..+ ...+|..|.+ || =.+|+.+... +.+.+.+... -.-...|.
T Consensus 17 ~~~~V~~~~~~~~~~~~l~l~~~~~~--~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~~l~v~~~~~G~~s~~l~ 94 (272)
T 2bgi_A 17 DAQTVTSVRHWTDTLFSFRVTRPQTL--RFRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELEFYSIKVPDGPLTSRLQ 94 (272)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCTTC--CCCTTCEEEEEEECTTSCEEEEEEECCSCTTCSEEEEEEECCTTCTTHHHHT
T ss_pred EEEEEEEEEEcCCCEEEEEEeCCCCC--ccCCCCEEEEEeccCCCCeeeeeeeeccCCCCCeEEEEEEEccCCCchhHHH
Confidence 34778887754 56788888877543 4788998866 34 2556666543 5666665432 32233456
Q ss_pred CCCCCCeeeec
Q psy4641 75 AVAVDQFVNLE 85 (229)
Q Consensus 75 ~lk~Gd~VNLE 85 (229)
.+++||.|.+.
T Consensus 95 ~l~~Gd~v~v~ 105 (272)
T 2bgi_A 95 HIKVGEQIILR 105 (272)
T ss_dssp TCCTTCEEEEE
T ss_pred hCCCCCEEEEe
Confidence 89999999986
No 21
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=36.15 E-value=86 Score=25.19 Aligned_cols=79 Identities=6% Similarity=0.060 Sum_probs=50.4
Q ss_pred eEEEEEEEEc-CCeEEEEEEcCCC-CCCCCccCCcEEE----cce----eeeeeEEe--CCEEEEEEeHh--HHhhccCC
Q psy4641 9 IGKVSAVFSY-NDFKSMTIWFPSD-LLDGISISCSVAI----NGV----CLSVTKIE--GNYISFDVINE--TLKITNLK 74 (229)
Q Consensus 9 ~G~I~~i~~~-~~~~~l~i~~p~~-~~~~l~~g~SIAV----nGv----cLTV~~i~--~~~f~v~lipe--TL~~TtL~ 74 (229)
..+|.+++.. ++..+++++.+.. ......+|..|.+ +|- .+|+.+.. ++.+.+.+-.+ =.-...|.
T Consensus 13 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~~~G~~S~~l~ 92 (243)
T 2eix_A 13 KFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYID 92 (243)
T ss_dssp EEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCTTCHHHHHHH
T ss_pred EEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEcCCCCcchHhh
Confidence 4677777654 5678899988742 1235688998876 453 44666653 35666665432 22223356
Q ss_pred CCCCCCeeeeccC
Q psy4641 75 AVAVDQFVNLERS 87 (229)
Q Consensus 75 ~lk~Gd~VNLEra 87 (229)
++++||.|.+..+
T Consensus 93 ~l~~Gd~v~v~gP 105 (243)
T 2eix_A 93 HLNPGDFLQVRGP 105 (243)
T ss_dssp TCCTTCEEEEEEE
T ss_pred cCCCCCEEEEECC
Confidence 7899999998764
No 22
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=35.99 E-value=38 Score=23.77 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.2
Q ss_pred CccCCcEEEcceeeeeeEEeCCEE
Q psy4641 36 ISISCSVAINGVCLSVTKIEGNYI 59 (229)
Q Consensus 36 l~~g~SIAVnGvcLTV~~i~~~~f 59 (229)
...|++|.++|..|||.++++..+
T Consensus 54 P~~Gd~v~~~~~~f~V~~~~~~rI 77 (86)
T 2pls_A 54 PQTGDITFWENWRLEVIDMDSKRI 77 (86)
T ss_dssp CCTTCEEEETTEEEEEEEEETTEE
T ss_pred CCCCCEEEECCEEEEEEEeeCCEE
Confidence 477999999999999999998753
No 23
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=35.42 E-value=40 Score=23.48 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCccCCcEEEcceeeeeeEEeCCEE
Q psy4641 35 GISISCSVAINGVCLSVTKIEGNYI 59 (229)
Q Consensus 35 ~l~~g~SIAVnGvcLTV~~i~~~~f 59 (229)
-...|++|.++|..|||.++++...
T Consensus 49 iP~~Gd~v~~~~~~f~V~~~~~~rI 73 (81)
T 3lae_A 49 IPDEGTICEIDGLLITILEVGDNMI 73 (81)
T ss_dssp CCCTTCEEEETTEEEEEEEEETTEE
T ss_pred CCCCCCEEEECCEEEEEEEeeCCEE
Confidence 4678999999999999999998754
No 24
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=34.78 E-value=75 Score=27.03 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=47.9
Q ss_pred EEEEEEEEEEcCC------eEEEEEEeccchhccceeeeccEEEc--ee----------eeeeeeEe------CcEEEEE
Q psy4641 105 DVANVRAIQALEK------NYRMEIQMTNKSLMKYVFYKGYVAID--GI----------SLTIGKVF------EDYFYVH 160 (229)
Q Consensus 105 ~~~~i~~i~~~~~------~~~~~i~~p~~~~~~~iv~KGsIavd--Gv----------SLTV~~v~------~~~f~v~ 160 (229)
-.++|+++++... .+.++|+.| ..+ + ..+..+|.|- |+ ..||++.. ++.+++.
T Consensus 34 ~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~-~-~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~ 110 (310)
T 3vo2_A 34 YVGRCLSNTRITGDDAPGETWHMVFSTE-GEI-P-YREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLC 110 (310)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECT-TCC-C-CCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEE
T ss_pred EEEEEEEEEEccCCCCCccEEEEEEeCC-CCC-c-ccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEE
Confidence 4777888776543 788888866 543 3 3566677662 32 57888763 3455555
Q ss_pred eehh-----------hHhhccCCCCCCCCEeEEc
Q psy4641 161 LIPE-----------TMEKTTMSKKAVGDALNIE 183 (229)
Q Consensus 161 lIP~-----------Tl~~T~l~~~k~Gd~VNiE 183 (229)
+--+ =.-..-|..+++||.|.|+
T Consensus 111 Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 144 (310)
T 3vo2_A 111 VKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKIT 144 (310)
T ss_dssp EECCEEECTTSCEEECHHHHHHHTCCTTCEEEEE
T ss_pred EEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEE
Confidence 4422 2233345668999999987
No 25
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=34.23 E-value=1e+02 Score=26.38 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=52.3
Q ss_pred ceEEEEEEEEc-CCeEEEEEEcCCCC-CCCCccCCcEEEc--c----eeeeeeEEe-CCEEEEEEe--HhHHhhccC-CC
Q psy4641 8 GIGKVSAVFSY-NDFKSMTIWFPSDL-LDGISISCSVAIN--G----VCLSVTKIE-GNYISFDVI--NETLKITNL-KA 75 (229)
Q Consensus 8 ~~G~I~~i~~~-~~~~~l~i~~p~~~-~~~l~~g~SIAVn--G----vcLTV~~i~-~~~f~v~li--peTL~~TtL-~~ 75 (229)
..++|.+++.. ++.++++++.|... .....+|..|.+. | =.+|+.+.. .+.+.+.+- |.=.-...| ..
T Consensus 109 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~l~~~vk~~~~G~~S~~L~~~ 188 (338)
T 1krh_A 109 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVRNVPQGKMSEYLSVQ 188 (338)
T ss_dssp EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTSSCEEEEECCSCTTCSEEEEEEECCTTCHHHHHHHTT
T ss_pred EEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCCCccccccccCCCCCCeEEEEEEEcCCCCchhhHhhc
Confidence 35788888765 56788999887531 1356789888764 3 367776654 455665553 323333445 68
Q ss_pred CCCCCeeeeccC
Q psy4641 76 VAVDQFVNLERS 87 (229)
Q Consensus 76 lk~Gd~VNLEra 87 (229)
+++||.|.++-+
T Consensus 189 l~~Gd~v~v~gP 200 (338)
T 1krh_A 189 AKAGDKMSFTGP 200 (338)
T ss_dssp CCTTCEEEEEEE
T ss_pred cCCCCEEEEECC
Confidence 999999999855
No 26
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=32.61 E-value=46 Score=23.35 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=21.2
Q ss_pred CccCCcEEEcceeeeeeEEeCCEE
Q psy4641 36 ISISCSVAINGVCLSVTKIEGNYI 59 (229)
Q Consensus 36 l~~g~SIAVnGvcLTV~~i~~~~f 59 (229)
...|++|.++|..|+|.++++..+
T Consensus 52 P~~Gd~v~~~~~~f~V~~~~~~rI 75 (86)
T 2p4p_A 52 PXXTDFVLYDXYXFEIIDTENFRI 75 (86)
T ss_dssp CCTTCEEEETTEEEEEEEEETTEE
T ss_pred CCCCcEEEEeeEEEEEEEccCCEE
Confidence 477999999999999999998753
No 27
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=32.06 E-value=1.2e+02 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=26.1
Q ss_pred ceEEEEEEEEc-CCeEEEEEEcCCC-CCCCCccCCcEEE
Q psy4641 8 GIGKVSAVFSY-NDFKSMTIWFPSD-LLDGISISCSVAI 44 (229)
Q Consensus 8 ~~G~I~~i~~~-~~~~~l~i~~p~~-~~~~l~~g~SIAV 44 (229)
..++|.+++.. .+..+++++.|.. .+ ...+|..|.+
T Consensus 10 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~-~~~pGQ~v~l 47 (290)
T 2r6h_A 10 WECEVLSNKNVSTFIKEFVVKLPEGETM-NFKSGSYAQI 47 (290)
T ss_dssp EEEEEEEEEESSSSEEEEEEECSTTCCC-CCCTTCEEEE
T ss_pred EEEEEEEeeecCCCeEEEEEEcCCCCcc-ccCCCceEEE
Confidence 35788888875 4678899998752 22 3789999887
No 28
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=31.12 E-value=1.2e+02 Score=25.41 Aligned_cols=80 Identities=19% Similarity=0.078 Sum_probs=50.1
Q ss_pred ceEEEEEEEEcC------CeEEEEEEcCCCCCCCCccCCcEEEc-------c-----eeeeeeEEe------CCEEEEEE
Q psy4641 8 GIGKVSAVFSYN------DFKSMTIWFPSDLLDGISISCSVAIN-------G-----VCLSVTKIE------GNYISFDV 63 (229)
Q Consensus 8 ~~G~I~~i~~~~------~~~~l~i~~p~~~~~~l~~g~SIAVn-------G-----vcLTV~~i~------~~~f~v~l 63 (229)
..++|.+.+... +..+++|+.|...+ ...+|..|.+. | =.+|+.+.. ++.+.+.+
T Consensus 22 ~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~-~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~V 100 (304)
T 2bmw_A 22 FIGKVISNEPLVKEGGIGIVQHIKFDLTGGNL-KYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCV 100 (304)
T ss_dssp EEEEEEEEEECSCTTCSSCEEEEEEECTTSCC-CCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEE
T ss_pred EEEEEEEEEEecCCCCCCcEEEEEEecCCCcc-ccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEE
Confidence 357788877654 57888998875333 57899998882 3 237777653 35565554
Q ss_pred eHh------------HHhhccCCCCCCCCeeeeccCC
Q psy4641 64 INE------------TLKITNLKAVAVDQFVNLERSA 88 (229)
Q Consensus 64 ipe------------TL~~TtL~~lk~Gd~VNLEral 88 (229)
-.. =.-..-|..+++||.|.++.+.
T Consensus 101 k~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~ 137 (304)
T 2bmw_A 101 RQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137 (304)
T ss_dssp ECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEE
T ss_pred EEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEecc
Confidence 321 1111235568999999887543
No 29
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.67 E-value=1.5e+02 Score=21.26 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=25.4
Q ss_pred eeeceEEEEEEEEcCCeE---------------EEEEEcC-CCCCCCCccCCcEEE
Q psy4641 5 IVQGIGKVSAVFSYNDFK---------------SMTIWFP-SDLLDGISISCSVAI 44 (229)
Q Consensus 5 hId~~G~I~~i~~~~~~~---------------~l~i~~p-~~~~~~l~~g~SIAV 44 (229)
.+...|+|.++....+.+ .+.|.++ +..++.+++|+.|..
T Consensus 15 ~~~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F 70 (88)
T 2vb2_X 15 VISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAF 70 (88)
T ss_dssp CEEEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEE
T ss_pred eeEEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEE
Confidence 345778888887654332 3335554 335678999988764
No 30
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=30.33 E-value=82 Score=26.74 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=47.2
Q ss_pred EEEEEEEEEEcC------CeEEEEEEeccchhccceeeeccEEEc-------e-----eeeeeeeEe------CcEEEEE
Q psy4641 105 DVANVRAIQALE------KNYRMEIQMTNKSLMKYVFYKGYVAID-------G-----ISLTIGKVF------EDYFYVH 160 (229)
Q Consensus 105 ~~~~i~~i~~~~------~~~~~~i~~p~~~~~~~iv~KGsIavd-------G-----vSLTV~~v~------~~~f~v~ 160 (229)
..++|.++++.. +.+.++++.| .. .+| .+..+|.|. | =++||++.. ++.+++.
T Consensus 38 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~-~~-~~~-~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~ 114 (314)
T 1fnb_A 38 YVGRCLLNTKITGDDAPGETWHMVFSHE-GE-IPY-REGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLC 114 (314)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECT-TC-CCC-CTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEE
T ss_pred EEEEEEEEEEecCCCCCCcEEEEEEecC-CC-CCc-CCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEE
Confidence 357788888775 6788899888 54 343 566666652 3 258888763 3555554
Q ss_pred eeh-----------hhHhhccCCCCCCCCEeEEc
Q psy4641 161 LIP-----------ETMEKTTMSKKAVGDALNIE 183 (229)
Q Consensus 161 lIP-----------~Tl~~T~l~~~k~Gd~VNiE 183 (229)
+-- .=.-..-|..+++||.|.|+
T Consensus 115 Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~ 148 (314)
T 1fnb_A 115 VKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148 (314)
T ss_dssp EECCEEECTTSCEEECHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEE
Confidence 432 11112224458999999987
No 31
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=29.91 E-value=53 Score=23.51 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=21.2
Q ss_pred CccCCcEEEcceeeeeeEEeCCEE
Q psy4641 36 ISISCSVAINGVCLSVTKIEGNYI 59 (229)
Q Consensus 36 l~~g~SIAVnGvcLTV~~i~~~~f 59 (229)
...|++|.++|..|+|.++++..+
T Consensus 62 P~~Gd~v~~~~~~f~V~~~d~~rI 85 (94)
T 2oai_A 62 PHVGEYFDWAGWRIEIVDLDGARI 85 (94)
T ss_dssp CCTTCEEEETTEEEEEEEEETTEE
T ss_pred CCCCCEEEECCEEEEEEEEcCCEE
Confidence 477999999999999999998753
No 32
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=29.43 E-value=55 Score=23.23 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.2
Q ss_pred CccCCcEEEcceeeeeeEEeCCEE
Q psy4641 36 ISISCSVAINGVCLSVTKIEGNYI 59 (229)
Q Consensus 36 l~~g~SIAVnGvcLTV~~i~~~~f 59 (229)
...|++|.++|..|+|.++++..+
T Consensus 60 P~~Gd~v~~~~~~f~V~~~~~~rI 83 (92)
T 2o3g_A 60 PDVGDFADFHGWRFEVVEKEGQRI 83 (92)
T ss_dssp CCTTCEEEETTEEEEEEEEETTEE
T ss_pred CCCCCEEEECCEEEEEEEeeCCEE
Confidence 467999999999999999998753
No 33
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=29.21 E-value=44 Score=23.33 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=21.2
Q ss_pred CCccCCcEEEcceeeeeeEEeCCE
Q psy4641 35 GISISCSVAINGVCLSVTKIEGNY 58 (229)
Q Consensus 35 ~l~~g~SIAVnGvcLTV~~i~~~~ 58 (229)
-...|++|.++|..|+|.++++..
T Consensus 49 iP~~Gd~v~~~~~~f~V~~~~~~r 72 (83)
T 3llb_A 49 LPKRNEVVELGEFRFRVLNADSRR 72 (83)
T ss_dssp CCCTTCEEEETTEEEEEEEECSSC
T ss_pred CCCCCCEEEECCEEEEEEEeeCCE
Confidence 357899999999999999998864
No 34
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=28.77 E-value=1.4e+02 Score=24.58 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=47.4
Q ss_pred eEEEEEEEEEEc-CCeEEEEEEeccchhccceeeeccEEE-----ce----eeeeeeeEe-CcEEEEEeehh--hHhhcc
Q psy4641 104 IDVANVRAIQAL-EKNYRMEIQMTNKSLMKYVFYKGYVAI-----DG----ISLTIGKVF-EDYFYVHLIPE--TMEKTT 170 (229)
Q Consensus 104 d~~~~i~~i~~~-~~~~~~~i~~p~~~~~~~iv~KGsIav-----dG----vSLTV~~v~-~~~f~v~lIP~--Tl~~T~ 170 (229)
...++|.+++.. .+.+.++++.| +.+ . ..+..+|.| || =+.||++.. ++.+++.+..+ -.-..-
T Consensus 16 ~~~~~V~~~~~~~~~~~~l~l~~~-~~~-~-~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~~l~v~~~~~G~~s~~ 92 (272)
T 2bgi_A 16 PDAQTVTSVRHWTDTLFSFRVTRP-QTL-R-FRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELEFYSIKVPDGPLTSR 92 (272)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECC-TTC-C-CCTTCEEEEEEECTTSCEEEEEEECCSCTTCSEEEEEEECCTTCTTHHH
T ss_pred eEEEEEEEEEEcCCCEEEEEEeCC-CCC-c-cCCCCEEEEEeccCCCCeeeeeeeeccCCCCCeEEEEEEEccCCCchhH
Confidence 345788887754 56677888877 433 2 234444433 34 356777764 35676665543 333334
Q ss_pred CCCCCCCCEeEEc
Q psy4641 171 MSKKAVGDALNIE 183 (229)
Q Consensus 171 l~~~k~Gd~VNiE 183 (229)
|..+++||.|.+.
T Consensus 93 l~~l~~Gd~v~v~ 105 (272)
T 2bgi_A 93 LQHIKVGEQIILR 105 (272)
T ss_dssp HTTCCTTCEEEEE
T ss_pred HHhCCCCCEEEEe
Confidence 5689999999997
No 35
>3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald biostructures, ALS collaborative crystallography; 1.30A {Entamoeba histolytica}
Probab=28.45 E-value=21 Score=29.08 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=40.1
Q ss_pred EEEEEeccchhccceeeeccEEEc-eeeeeeeeEeCc---EEEEEeehhhHhhccCCCCCCCCEe
Q psy4641 120 RMEIQMTNKSLMKYVFYKGYVAID-GISLTIGKVFED---YFYVHLIPETMEKTTMSKKAVGDAL 180 (229)
Q Consensus 120 ~~~i~~p~~~~~~~iv~KGsIavd-GvSLTV~~v~~~---~f~v~lIP~Tl~~T~l~~~k~Gd~V 180 (229)
-+.+++| +.+..++.++-|.+.. |+.+...-++.+ .+.|.|+.++-+.- .+++||++
T Consensus 69 gi~i~iP-~g~~~~I~pRSsla~k~GI~v~~GvID~dYrGeI~v~l~N~~~~~~---~I~~GdRI 129 (163)
T 3lqw_A 69 GVSVQIP-HQCYGRIAPRSSLALKYGIDVGAGVIDEDYRGEIKVILFNHSNEIF---NGRKGDRI 129 (163)
T ss_dssp EEEEECC-TTEEEEEECCHHHHHHHCEEECCCEECTTCCSEEEEEEEECSSSCE---EECTTCEE
T ss_pred CCEEECC-CCeEEEEEecccccccCCEEecCeeECCCCCCcEEEEEEECCCCCE---EEcCCCEE
Confidence 3567889 8888899999999985 998876666655 58888876542221 24566643
No 36
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=27.54 E-value=48 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.6
Q ss_pred CccCCcEEEcceeeeeeEEeCCE
Q psy4641 36 ISISCSVAINGVCLSVTKIEGNY 58 (229)
Q Consensus 36 l~~g~SIAVnGvcLTV~~i~~~~ 58 (229)
...|++|.++|..|+|.++++..
T Consensus 59 P~~Ge~v~~~~~~f~V~~~d~~r 81 (91)
T 2pli_A 59 PVRGEKVLIGGLQFTVARADNRR 81 (91)
T ss_dssp CCTTCEEEETTEEEEEEEECSSC
T ss_pred CCCCCEEEECCEEEEEEEEeCCE
Confidence 47799999999999999998764
No 37
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=27.47 E-value=1.2e+02 Score=27.21 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=51.3
Q ss_pred ceEEEEEEEEcC------CeEEEEEEcCCCCCCCCccCCcEEEc-------ce-----eeeeeEEe------CCEEEEEE
Q psy4641 8 GIGKVSAVFSYN------DFKSMTIWFPSDLLDGISISCSVAIN-------GV-----CLSVTKIE------GNYISFDV 63 (229)
Q Consensus 8 ~~G~I~~i~~~~------~~~~l~i~~p~~~~~~l~~g~SIAVn-------Gv-----cLTV~~i~------~~~f~v~l 63 (229)
..++|.+++... +.++++++.|... ....+|..|.|. |- .+|+.+.. ++.+.+.+
T Consensus 123 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~-~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~V 201 (402)
T 2b5o_A 123 FLGKCIENYELVDEGGSGTVRHVTFDISEGD-LRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCV 201 (402)
T ss_dssp EEEEEEEEEECSCTTCCSCEEEEEEECTTSC-CCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEE
T ss_pred EEEEEEEEEEcCCCCCCCcEEEEEEECCCCC-CCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEE
Confidence 357888888754 6788888887532 357899998883 32 47776653 34555544
Q ss_pred eH------------hHHhhccCCCCCCC-CeeeeccCC
Q psy4641 64 IN------------ETLKITNLKAVAVD-QFVNLERSA 88 (229)
Q Consensus 64 ip------------eTL~~TtL~~lk~G-d~VNLEral 88 (229)
-. .=.-..-|..+++| |.|.++.+.
T Consensus 202 k~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~ 239 (402)
T 2b5o_A 202 RQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPV 239 (402)
T ss_dssp ECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEE
T ss_pred EEeeecccccCcCCCCchhHHHhhCCCCCceEEEEccc
Confidence 32 11112335568999 999987654
No 38
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=26.96 E-value=51 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=18.7
Q ss_pred CCCceecceeeEEEEeE-EEEEEEE
Q psy4641 89 KMNTEVGGHFLSGHIID-VANVRAI 112 (229)
Q Consensus 89 ~~gdrlgGH~V~GHVd~-~~~i~~i 112 (229)
.-|...|||++.|-|-. +++|.-.
T Consensus 99 ~~g~v~GGHL~~g~V~~~t~Ei~i~ 123 (147)
T 3hwu_A 99 GTFQGAGGHLLGLTVGTGSCEITVT 123 (147)
T ss_dssp TTCCEEEEEEEEEEEEEEEEEEEEE
T ss_pred CCCcEEeeEecCcEEEeEeEEEEEE
Confidence 34678999999998884 8887544
No 39
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=26.93 E-value=1.4e+02 Score=24.61 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=52.7
Q ss_pred eEEEEEEEE-cCCeEEEEEEcCCCCCC--CCccCCcEEEc-----c----eeeeeeEEeCCEEEEEEeHh---HHhhccC
Q psy4641 9 IGKVSAVFS-YNDFKSMTIWFPSDLLD--GISISCSVAIN-----G----VCLSVTKIEGNYISFDVINE---TLKITNL 73 (229)
Q Consensus 9 ~G~I~~i~~-~~~~~~l~i~~p~~~~~--~l~~g~SIAVn-----G----vcLTV~~i~~~~f~v~lipe---TL~~TtL 73 (229)
..+|.+++. ..+.++++++.|. ... ...+|..|.+- | =++|+.+...+.+.+++.-+ -.-..-|
T Consensus 10 ~~~V~~~~~~t~~~~~l~l~~~~-~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~~~~~i~~~~~~~~G~~S~~l 88 (252)
T 2gpj_A 10 ELEVIRSTYITPHMLRITLGGAG-LAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRDDEIDVDFVLHDTDGPASSWA 88 (252)
T ss_dssp EEEEEEEEEEETTEEEEEEESGG-GTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEETTEEEEEEECCSSCCHHHHHH
T ss_pred EEEEEEEEEcCCCEEEEEEEcCC-hhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCCCEEEEEEEEeCCCCcHHHHH
Confidence 467777765 4678899999764 223 36899988872 1 35777776556666665422 2333456
Q ss_pred CCCCCCCeeeeccCC
Q psy4641 74 KAVAVDQFVNLERSA 88 (229)
Q Consensus 74 ~~lk~Gd~VNLEral 88 (229)
.++++||.|.+.-+.
T Consensus 89 ~~l~~Gd~l~v~gP~ 103 (252)
T 2gpj_A 89 KTAQVGELIQIGGPG 103 (252)
T ss_dssp HHCCTTCEEEEEEEE
T ss_pred hhCCCCCEEEEecCC
Confidence 689999999997654
No 40
>3so2_A Putative uncharacterized protein; deoxyuridine triphosphatase, dutpase, cancer MARK hydrolase; 1.64A {Chlorella variabilis}
Probab=26.45 E-value=16 Score=29.09 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=39.5
Q ss_pred EEEEeccchhccceeeeccEEE-ceeeeeeeeEeCc---EEEEEeehhhHhhccCCCCCCCCEe
Q psy4641 121 MEIQMTNKSLMKYVFYKGYVAI-DGISLTIGKVFED---YFYVHLIPETMEKTTMSKKAVGDAL 180 (229)
Q Consensus 121 ~~i~~p~~~~~~~iv~KGsIav-dGvSLTV~~v~~~---~f~v~lIP~Tl~~T~l~~~k~Gd~V 180 (229)
+.+++| +.+..++.++-|.+. .|+.++..-++.+ .+.|.|+.++-+.- .+++||++
T Consensus 51 i~i~iP-~g~~~~i~pRSsla~k~Gi~v~~GvID~dYrGei~v~l~N~~~~~~---~I~~GdRI 110 (146)
T 3so2_A 51 LQIAIP-PGTYARVAPRSGLAVKHFIDTGAGVVDEDYRGEVGVVLFNHGETPF---QVRRGDRV 110 (146)
T ss_dssp EEEECC-TTEEEEEECCHHHHHHHCEEECSCEECTTCCSCCEEEEEECSSSCE---EECTTCEE
T ss_pred CEEEcC-CCEEEEEEecCcchhcCCEEcCCcEeCCCCCCcEEEEEEeCCCCCe---EECCCCEE
Confidence 567789 888889999999997 5999977666665 38888876542221 24456543
No 41
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=26.19 E-value=50 Score=23.54 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=20.5
Q ss_pred CccCCcEEEcceeeeeeEEeCCE
Q psy4641 36 ISISCSVAINGVCLSVTKIEGNY 58 (229)
Q Consensus 36 l~~g~SIAVnGvcLTV~~i~~~~ 58 (229)
...|++|.++|..|+|.++++..
T Consensus 61 P~~Gd~v~~~~~~f~V~~~d~~r 83 (93)
T 2nqw_A 61 PHVGDTAVYEPFRFQVTQMDKRR 83 (93)
T ss_dssp CCTTCEEEETTEEEEEEEECSSS
T ss_pred CCCCCEEEECCEEEEEEEeeCCE
Confidence 46799999999999999998764
No 42
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=26.11 E-value=67 Score=30.76 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=39.3
Q ss_pred EEEEEcCCCCCCCCccCCcEEEc-c-eeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCCeeeec
Q psy4641 23 SMTIWFPSDLLDGISISCSVAIN-G-VCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLE 85 (229)
Q Consensus 23 ~l~i~~p~~~~~~l~~g~SIAVn-G-vcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd~VNLE 85 (229)
++.+..| .+.+.+++|+.|-+| | +.|.|.++.++.+...+ .+=|.++...-|||-
T Consensus 148 ~i~v~y~-~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~i~~~V-------~~gG~L~~~KgvNlP 204 (526)
T 4drs_A 148 CISCSYS-LLPKSVQIGSTVLIADGSLSTQVLEIGDDFIVCKV-------LNSVTIGERKNMNLP 204 (526)
T ss_dssp EEEBSCT-TSTTTCCTTCEEEETTTTEEEEEEEECSSEEEEEC-------CSCCEECSSCBEECT
T ss_pred eeeecch-hhHHHhcCCCEEEEeCCCceEEEEEEeCCeEEEEe-------ccCccccccccccCC
Confidence 3444333 466899999999996 6 99999999998766554 444556666667773
No 43
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=25.61 E-value=67 Score=24.03 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCccCCcEEEcceeeeeeEEeCCEE
Q psy4641 35 GISISCSVAINGVCLSVTKIEGNYI 59 (229)
Q Consensus 35 ~l~~g~SIAVnGvcLTV~~i~~~~f 59 (229)
-.+.|++|.++|..|||.++++..+
T Consensus 80 iP~~Gd~v~~~g~~f~V~~~d~~RI 104 (113)
T 3ded_A 80 VPSVTDRFEWNGFSFEVVDMDRTRV 104 (113)
T ss_dssp SCCTTCEEEETTEEEEEEEEETTEE
T ss_pred CCCCCCEEEECCEEEEEEEEeCCeE
Confidence 4678999999999999999998754
No 44
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=24.66 E-value=96 Score=30.00 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=40.2
Q ss_pred eEEEEEEcCCCCCCCCccCCcEEEcc--eeeeeeEE--eCCEEEEEEeHhHHhhccCCCCCCCCeeeec
Q psy4641 21 FKSMTIWFPSDLLDGISISCSVAING--VCLSVTKI--EGNYISFDVINETLKITNLKAVAVDQFVNLE 85 (229)
Q Consensus 21 ~~~l~i~~p~~~~~~l~~g~SIAVnG--vcLTV~~i--~~~~f~v~lipeTL~~TtL~~lk~Gd~VNLE 85 (229)
..++.+..| .+.+.+++|+.|-+|. +.|.|.++ +++.+...+ .+=+.++...-|||-
T Consensus 102 ~~~i~v~y~-~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~~i~~~v-------~~gg~l~~~KgvnlP 162 (587)
T 2e28_A 102 PEKISVTYP-SLIDDVSVGAKILLDDGLISLEVNAVDKQAGEIVTTV-------LNGGVLKNKKGVNVP 162 (587)
T ss_dssp SSEEEBSCT-TSTTTCCTTCEEEETTTTEEEEEEEEETTTTEEEEEC-------CSCCCBCSSCBEECT
T ss_pred CCEEecchH-HHHhhcCCCCEEEEeCCEEEEEEEEEecCCCeEEEEE-------ecCCEEcCCceeecC
Confidence 334455444 5678999999999988 89999999 677665555 344555555567763
No 45
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=24.17 E-value=1.9e+02 Score=20.28 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=25.3
Q ss_pred eeeceEEEEEEEEcCCe---------------EEEEEEcC-CCCCCCCccCCcEEE
Q psy4641 5 IVQGIGKVSAVFSYNDF---------------KSMTIWFP-SDLLDGISISCSVAI 44 (229)
Q Consensus 5 hId~~G~I~~i~~~~~~---------------~~l~i~~p-~~~~~~l~~g~SIAV 44 (229)
.+...|+|.++....+. ..+.|.++ +..++.+++|+.|..
T Consensus 7 ~~~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F 62 (80)
T 2qcp_X 7 VISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAF 62 (80)
T ss_dssp CEEEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEE
T ss_pred eEEEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEE
Confidence 34577888887755433 33445554 345678999988764
No 46
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=24.15 E-value=1.3e+02 Score=25.35 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=44.2
Q ss_pred eEEEEEEEEEEcCCeEEEEEEe-c-cchhccceeeeccEEEceeeeeeeeEeC-cEEEEEeehhhHhhccCCCCCCCCEe
Q psy4641 104 IDVANVRAIQALEKNYRMEIQM-T-NKSLMKYVFYKGYVAIDGISLTIGKVFE-DYFYVHLIPETMEKTTMSKKAVGDAL 180 (229)
Q Consensus 104 d~~~~i~~i~~~~~~~~~~i~~-p-~~~~~~~iv~KGsIavdGvSLTV~~v~~-~~f~v~lIP~Tl~~T~l~~~k~Gd~V 180 (229)
...|+|+++.+.++...+.+.- | +++=--..-+.|.| ++ +.|.++.. +..-+.+.. +.+++|+.|
T Consensus 15 ~~~a~V~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i--~~--~~V~~v~~~~g~i~H~~~--------~~l~~g~~V 82 (241)
T 3kew_A 15 EFKGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLI--DG--IKVLDVYEEEGKVYHVLE--------KEPKKLKNL 82 (241)
T ss_dssp EEEECEEEEEEETTEEEEEESEECCCCCBTTBCCCCEEE--TT--EEEEEEEEETTEEEEEES--------SCCCCCSSE
T ss_pred eeEEEEEEEEecCCeEEEEEeCCcccCCCCCCCCCEEEE--ee--EEEEEEEEeCCEEEEEEC--------CcCCCCCEE
Confidence 3678999999887765554432 2 00002246677777 33 45666632 222333332 456799999
Q ss_pred EEcccCccc
Q psy4641 181 NIEVDSQTQ 189 (229)
Q Consensus 181 NiE~D~~t~ 189 (229)
.+++|.--|
T Consensus 83 ~~~vD~~rR 91 (241)
T 3kew_A 83 QCELDWERR 91 (241)
T ss_dssp EEEECHHHH
T ss_pred EEEECHHHh
Confidence 999996433
No 47
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=24.02 E-value=65 Score=22.79 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.4
Q ss_pred CccCCcEEE--cceeeeeeEEeCCE
Q psy4641 36 ISISCSVAI--NGVCLSVTKIEGNY 58 (229)
Q Consensus 36 l~~g~SIAV--nGvcLTV~~i~~~~ 58 (229)
...|++|.+ +|..|+|.++++..
T Consensus 57 P~~Gd~v~~~~~~~~f~V~~~~~~r 81 (93)
T 2r2z_A 57 PDEGEKPSFEVGNIKLTAEEMEGTR 81 (93)
T ss_dssp CCTTCCCEEEETTEEEEEEEEETTE
T ss_pred CCCCCEEEEecCCEEEEEEEeeCCE
Confidence 467999988 99999999999875
No 48
>3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, UMP, product complex, DUTP pyrophosphat DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB: 3hhq_A
Probab=22.55 E-value=22 Score=29.03 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=34.3
Q ss_pred EEEEeccchhccceeeeccEEE-ceeeeeeeeEeCc---EEEEEeehhh
Q psy4641 121 MEIQMTNKSLMKYVFYKGYVAI-DGISLTIGKVFED---YFYVHLIPET 165 (229)
Q Consensus 121 ~~i~~p~~~~~~~iv~KGsIav-dGvSLTV~~v~~~---~f~v~lIP~T 165 (229)
+.+++| +.+..++.++-|.+. .|+.++..-++.+ .+.|.|+.++
T Consensus 73 i~i~iP-~g~~~~I~pRSgla~K~GI~v~~GvID~dYrGeI~v~L~N~~ 120 (167)
T 3f4f_A 73 ISFTVP-VGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHS 120 (167)
T ss_dssp EEEECC-TTEEEEEECCHHHHHHHCEEEESCEECTTCCSCCEEEEEECS
T ss_pred CEEECC-CCcEEEEEecCcccccCCEEEcceEECCCCCCeEEEEEEeCC
Confidence 567789 888889999999997 5999877666665 4888887654
No 49
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=22.43 E-value=1.5e+02 Score=24.21 Aligned_cols=80 Identities=8% Similarity=0.100 Sum_probs=50.0
Q ss_pred ceEEEEEEEEc-CCeEEEEEEcCCC-CCCCCccCCcEEEc----ce----eeeeeEEe--CCEEEEEEeHh---------
Q psy4641 8 GIGKVSAVFSY-NDFKSMTIWFPSD-LLDGISISCSVAIN----GV----CLSVTKIE--GNYISFDVINE--------- 66 (229)
Q Consensus 8 ~~G~I~~i~~~-~~~~~l~i~~p~~-~~~~l~~g~SIAVn----Gv----cLTV~~i~--~~~f~v~lipe--------- 66 (229)
..++|.+++.. ++..+++++.|.. ......+|..|.+. |- .+|+.+.. ++.+++.+-..
T Consensus 17 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~ 96 (275)
T 1umk_A 17 YPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFP 96 (275)
T ss_dssp EEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBT
T ss_pred EEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEeccCcccccC
Confidence 35678888765 4677889988742 12356899988764 52 56666553 35666666432
Q ss_pred --HHhhccCCCCCCCCeeeeccC
Q psy4641 67 --TLKITNLKAVAVDQFVNLERS 87 (229)
Q Consensus 67 --TL~~TtL~~lk~Gd~VNLEra 87 (229)
=.-...|..+++||.|.+.-+
T Consensus 97 ~~G~~S~~L~~l~~Gd~v~v~gP 119 (275)
T 1umk_A 97 AGGKMSQYLESMQIGDTIEFRGP 119 (275)
T ss_dssp TCCHHHHHHHHCCTTCEEEEEEE
T ss_pred CCChhHHHHhcCCCCCEEEEEcC
Confidence 222233456889998887654
No 50
>3p48_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, DUMPPNP pyrophosphatase, phosphoprotein, structural genomics; HET: DUP; 1.67A {Saccharomyces cerevisiae} SCOP: b.85.4.0
Probab=22.42 E-value=21 Score=28.34 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=34.0
Q ss_pred EEEEeccchhccceeeeccEEE-ceeeeeeeeEeCc---EEEEEeehhh
Q psy4641 121 MEIQMTNKSLMKYVFYKGYVAI-DGISLTIGKVFED---YFYVHLIPET 165 (229)
Q Consensus 121 ~~i~~p~~~~~~~iv~KGsIav-dGvSLTV~~v~~~---~f~v~lIP~T 165 (229)
+.+++| +.+..++.++-|.+. .|+.++..-++.+ .+.|.|+.++
T Consensus 53 i~i~iP-~g~~~~i~pRSgla~k~Gi~v~~GvID~dYrGei~v~l~N~~ 100 (147)
T 3p48_A 53 ISFTVP-VGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHS 100 (147)
T ss_dssp EEEECC-TTEEEEEECCHHHHHHHCEEECCCEECTTCCSCCEEEEEECS
T ss_pred cEEECC-CCeEEEEEECCcccccCCEEcCCcEECCCCCCcEEEEEEECC
Confidence 467789 888889999999997 5998876666655 4888887654
No 51
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=22.42 E-value=1.9e+02 Score=24.23 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=47.7
Q ss_pred EEEEEEEEEEcC------CeEEEEEEeccchhccceeeeccEEEc--e------------eeeeeeeEe------CcEEE
Q psy4641 105 DVANVRAIQALE------KNYRMEIQMTNKSLMKYVFYKGYVAID--G------------ISLTIGKVF------EDYFY 158 (229)
Q Consensus 105 ~~~~i~~i~~~~------~~~~~~i~~p~~~~~~~iv~KGsIavd--G------------vSLTV~~v~------~~~f~ 158 (229)
..++|.++++.. +.+.++|+.| +.+ + ..+..+|.|. + =++||++.. ++.++
T Consensus 29 ~~~~V~~~~~~t~~~~~~~v~~~~l~~~-~~~-~-~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~ 105 (311)
T 3lo8_A 29 FTATIVSVESLVGPKAPGETCHIVIDHG-GNV-P-YWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGS 105 (311)
T ss_dssp EEEEEEEEEECSCTTSSSCEEEEEEECT-TSS-C-CCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEE
T ss_pred eEEEEEeeEeccCCCCCCccEEEEEeCC-CCC-c-ccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEE
Confidence 467888888764 6788899887 532 2 2344555442 3 346777763 24566
Q ss_pred EEee---------------hhhHhhccCCCCCCCCEeEEc
Q psy4641 159 VHLI---------------PETMEKTTMSKKAVGDALNIE 183 (229)
Q Consensus 159 v~lI---------------P~Tl~~T~l~~~k~Gd~VNiE 183 (229)
+.+- |.=.-..-|..+++||.|.++
T Consensus 106 l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 145 (311)
T 3lo8_A 106 LCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLT 145 (311)
T ss_dssp EEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEE
T ss_pred EEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEE
Confidence 5553 333333445668999999987
No 52
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.06 E-value=2.9e+02 Score=21.72 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCCCCeeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEcee
Q psy4641 75 AVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGI 145 (229)
Q Consensus 75 ~lk~Gd~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGv 145 (229)
.+..||.|=+++... .-.|.+|--.+|+-..|..+...++.+ ++...|+.+.+..++...+.|-|.
T Consensus 123 ~i~~GD~viv~~~~~---~~~G~ivv~~~~~~~~vKr~~~~~~~~--~L~~~N~~y~~i~i~~~~~~i~G~ 188 (196)
T 3k2z_A 123 HICDGDLVLVRRQDW---AQNGDIVAAMVDGEVTLAKFYQRGDTV--ELRPANREMSSMFFRAEKVKILGK 188 (196)
T ss_dssp TCCTTCEEEEEECSC---CCTTCEEEEEETTEEEEEEEEEETTEE--EEECSCTTSCCEEEEGGGCEEEEE
T ss_pred CCCCCCEEEEeccCc---CCCCCEEEEEECCcEEEEEEEEECCEE--EEEECCCCCCCEEecCCCEEEEEE
Confidence 578999999998753 457888888899988899988877654 444444666666666666666663
No 53
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=21.86 E-value=1.8e+02 Score=23.69 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=48.8
Q ss_pred ceEEEEEEEEc-CCeEEEEEEcCCCC-CCCCccCCcEEE----cce----eeeeeEEe--CCEEEEEEeH----------
Q psy4641 8 GIGKVSAVFSY-NDFKSMTIWFPSDL-LDGISISCSVAI----NGV----CLSVTKIE--GNYISFDVIN---------- 65 (229)
Q Consensus 8 ~~G~I~~i~~~-~~~~~l~i~~p~~~-~~~l~~g~SIAV----nGv----cLTV~~i~--~~~f~v~lip---------- 65 (229)
..++|.++++. ++..+++++.|... .....+|..|.+ +|- .+|+.+.. .+.+.+.+-.
T Consensus 13 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~ 92 (270)
T 2cnd_A 13 IHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFP 92 (270)
T ss_dssp EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTTBT
T ss_pred EEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEeccCcccccC
Confidence 34677777654 56788999987531 125788997766 453 56776653 3556665431
Q ss_pred h-HHhhccCCCCCCCCeeeeccC
Q psy4641 66 E-TLKITNLKAVAVDQFVNLERS 87 (229)
Q Consensus 66 e-TL~~TtL~~lk~Gd~VNLEra 87 (229)
. =.-..-|..+++||.|.++.+
T Consensus 93 ~~G~~s~~l~~l~~Gd~v~v~gP 115 (270)
T 2cnd_A 93 NGGLMTQYLDSLPVGSYIDVKGP 115 (270)
T ss_dssp TCCHHHHHHHHCCTTCEEEEEEE
T ss_pred CCCchhhHHhcCCCCCEEEEECC
Confidence 1 111223456889999888754
No 54
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=21.60 E-value=1.5e+02 Score=24.92 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=49.5
Q ss_pred eEEEEEEEEcCC---------------eEEEEEEcCCCCCCCCccCCcEEEc-------c------------eeeeeeEE
Q psy4641 9 IGKVSAVFSYND---------------FKSMTIWFPSDLLDGISISCSVAIN-------G------------VCLSVTKI 54 (229)
Q Consensus 9 ~G~I~~i~~~~~---------------~~~l~i~~p~~~~~~l~~g~SIAVn-------G------------vcLTV~~i 54 (229)
.++|.+++.... .++++++.|...+ ...+|+.|.|. | =.+|+.+.
T Consensus 23 ~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~-~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~ 101 (314)
T 2rc5_A 23 KAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAY-PYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASP 101 (314)
T ss_dssp EEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTC-CCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSC
T ss_pred EEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcC-cccCCCEEEEECCCCccccCccchhhcCCCceeeeccCC
Confidence 467888776543 6788888875423 46889999883 3 13777766
Q ss_pred e------CCEEEEEEeHh------------HHhhccCCCCCCCCeeeeccCC
Q psy4641 55 E------GNYISFDVINE------------TLKITNLKAVAVDQFVNLERSA 88 (229)
Q Consensus 55 ~------~~~f~v~lipe------------TL~~TtL~~lk~Gd~VNLEral 88 (229)
. ++.+.+.+-.. =.-..-|..+++||.|.++.+.
T Consensus 102 p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~ 153 (314)
T 2rc5_A 102 SYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPS 153 (314)
T ss_dssp TTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEE
T ss_pred ccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEecc
Confidence 3 34555554321 1112235568999999987553
No 55
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=21.56 E-value=2.1e+02 Score=19.92 Aligned_cols=42 Identities=14% Similarity=-0.076 Sum_probs=24.3
Q ss_pred ceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEE---cc--eeeeeeEEe
Q psy4641 8 GIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAI---NG--VCLSVTKIE 55 (229)
Q Consensus 8 ~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAV---nG--vcLTV~~i~ 55 (229)
-+|.|.+.....+ +++|+.. ..+..||.|-+ +| ..+||.++.
T Consensus 8 fvG~V~~~~~~~g--~~~ie~r----N~f~~GD~iEi~~P~g~~~~~~v~~m~ 54 (89)
T 4he6_A 8 FAGLVLGYDPETG--IATVQQR----NHFRPGDEVEFFGPEIENFTQVIEKIW 54 (89)
T ss_dssp CSEEEEEEETTTT--EEEEEES----SCBCTTCEEEEESTTSCCEEEECCCEE
T ss_pred EEEEEEEEeCCCC--EEEEEEc----CCcCCCCEEEEEcCCCCcEEEEeHHeE
Confidence 4677777655544 3455553 34677887765 44 445555553
No 56
>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A
Probab=21.53 E-value=21 Score=28.31 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=33.7
Q ss_pred EEEEeccchhccceeeeccEEEceeeeeeeeEeCc---EEEEEeehhh
Q psy4641 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFED---YFYVHLIPET 165 (229)
Q Consensus 121 ~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~---~f~v~lIP~T 165 (229)
+.+++| +.+..++.++.|.+..|+.+...-++.+ .+.|.|+.++
T Consensus 54 ~~i~iP-~g~~~~i~pRSsla~kGi~v~~GvID~dYrGei~v~l~N~~ 100 (147)
T 2ol1_A 54 ISMSMP-KFCYGRIAPRSGLSLKGIDIGGGVIDEDYRGNIGVILINNG 100 (147)
T ss_dssp EEECCC-TTEEEEEECCHHHHTTTEEEECCEECTTCCSCCEEEEEECS
T ss_pred eEEECC-CCeEEEEEeCCchhhCCeEECcEEeCCCCCCeeEEEEEeCC
Confidence 457789 8888999999999999998875445544 4778887664
No 57
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=20.41 E-value=1.9e+02 Score=23.18 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=46.5
Q ss_pred eEEEEEEEEc-CCeEEEEEEcCCCCCCCCccCCcEEEc----c----eeeeeeEEeC-CEEEEEEe--HhHHhhccCCCC
Q psy4641 9 IGKVSAVFSY-NDFKSMTIWFPSDLLDGISISCSVAIN----G----VCLSVTKIEG-NYISFDVI--NETLKITNLKAV 76 (229)
Q Consensus 9 ~G~I~~i~~~-~~~~~l~i~~p~~~~~~l~~g~SIAVn----G----vcLTV~~i~~-~~f~v~li--peTL~~TtL~~l 76 (229)
.++|.++++. ++.++++++ |+.+ ...+|..|.+. | =.+|+.+... +.+++.+. |.-.-..-|..+
T Consensus 6 ~~~V~~~~~~~~~~~~l~l~-~~~~--~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~l 82 (248)
T 1fdr_A 6 TGKVTKVQNWTDALFSLTVH-APVL--PFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAAL 82 (248)
T ss_dssp EEEEEEEEECSSSEEEEEEE-CCCC--CCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCTTCSSHHHHHTC
T ss_pred EEEEEEEEEcCCCEEEEEEe-CCCC--CcCCCCcEEEEccCCCCeeeeeecccCCCCCCcEEEEEEEeCCCchhhHHHhC
Confidence 4678887765 457788886 4332 57899988763 4 3677766543 45555553 222222335578
Q ss_pred CCCCeeeec
Q psy4641 77 AVDQFVNLE 85 (229)
Q Consensus 77 k~Gd~VNLE 85 (229)
++||.|.+.
T Consensus 83 ~~Gd~v~v~ 91 (248)
T 1fdr_A 83 KPGDEVQVV 91 (248)
T ss_dssp CTTCEEEEE
T ss_pred CCcCEEEEe
Confidence 999999997
No 58
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=20.27 E-value=18 Score=28.18 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=38.0
Q ss_pred EEEEeccchhccceeeeccEEEceeeeeeeeEeCc---EEEEEeehhhHhhccCCCCCCCCEe
Q psy4641 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFED---YFYVHLIPETMEKTTMSKKAVGDAL 180 (229)
Q Consensus 121 ~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~---~f~v~lIP~Tl~~T~l~~~k~Gd~V 180 (229)
+.+++| +.+.-++.++-|.+..|+.+...-++.+ .+.|.|+.++-..- .+++||++
T Consensus 40 ~~i~lP-~g~~~~i~pRSsla~kGi~v~~GvID~gYrGei~v~l~N~~~~~~---~I~~G~RI 98 (136)
T 1f7d_A 40 VKLMLP-KGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSI---TLMERQKI 98 (136)
T ss_dssp CEECCC-TTEEEEEECCHHHHTTTEEEECCEECTTCCSCCEEEEEECSSSCE---EECTTCEE
T ss_pred EEEEcC-CCeEEEEEcCCccccCCEEecCceECCCCCceEEEEEEeCCCCCE---EeCCCCEE
Confidence 356778 8888889999999988987765445554 57787776543222 24466653
Done!