RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4641
(229 letters)
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli
[TaxId: 562]}
Length = 113
Score = 100 bits (251), Expect = 4e-28
Identities = 56/108 (51%), Positives = 77/108 (71%)
Query: 94 VGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVF 153
+GGH +SGHI+ A V I E N ++ ++ + LMKY+ YKG++ IDGISLT+G+V
Sbjct: 1 IGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT 60
Query: 154 EDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKE 201
F VHLIPET+E+TT+ KK +G +NIE+D QTQ +V+TVERVL
Sbjct: 61 PTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAA 108
Score = 59.2 bits (143), Expect = 3e-12
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPS-DLLDGISISCSVAINGVCLSVTKIEGNYI 59
+ +G + +V+ + + + + + L+ I + I+G+ L+V ++
Sbjct: 5 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRF 64
Query: 60 SFDVINETLKITNLKAVAVDQFVNLE 85
+I ETL+ T L + VN+E
Sbjct: 65 CVHLIPETLERTTLGKKKLGARVNIE 90
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli
[TaxId: 562]}
Length = 93
Score = 93.5 bits (232), Expect = 2e-25
Identities = 44/93 (47%), Positives = 65/93 (69%)
Query: 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
MFTGIVQG K+ ++ +F++ + P +LDG+ SVA NG CL+VT+I GN++S
Sbjct: 1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60
Query: 61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTE 93
FD++ ETL+ITNL + V +VN+ER+AK + E
Sbjct: 61 FDLMKETLRITNLGDLKVGDWVNVERAAKFSDE 93
Score = 68.0 bits (166), Expect = 8e-16
Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 100 SGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYV 159
+G + A + +I +++ + ++ + VA +G LT+ ++ ++
Sbjct: 3 TGIVQGTAKLVSIDEKPNFRTHVVELPDH-MLDGLETGASVAHNGCCLTVTEINGNHVSF 61
Query: 160 HLIPETMEKTTMSKKAVGDALNIE 183
L+ ET+ T + VGD +N+E
Sbjct: 62 DLMKETLRITNLGDLKVGDWVNVE 85
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 110
Score = 90.8 bits (225), Expect = 3e-24
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 95 GGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFE 154
GGHF+ GH+ VA + + + + + ++KY+ YKGY+A+DG SLTI V +
Sbjct: 3 GGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDD 62
Query: 155 DYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGN 205
F + +I T K M+KK VGD +N+EVD I E++++ + +
Sbjct: 63 STFSIMMISYTQSKVIMAKKNVGDLVNVEVD----QIGKYTEKLVEAHIAD 109
Score = 57.6 bits (139), Expect = 1e-11
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 3 TGIVQGIGKVSAVFSYNDFKSMTIWFP-SDLLDGISISCSVAINGVCLSVTKIEGNYISF 61
G V + ++ + T +L I +A++G L++T ++ + S
Sbjct: 8 QGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSI 67
Query: 62 DVINETLKITNLKAVAVDQFVNLE 85
+I+ T + V VN+E
Sbjct: 68 MMISYTQSKVIMAKKNVGDLVNVE 91
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 92
Score = 76.2 bits (187), Expect = 6e-19
Identities = 31/92 (33%), Positives = 46/92 (50%)
Query: 1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
MFTG+V+ IG V V D +LD S+A+NG CL+VT + + +
Sbjct: 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFT 60
Query: 61 FDVINETLKITNLKAVAVDQFVNLERSAKMNT 92
+ E+L++TNL VNLER+ +T
Sbjct: 61 VGIAPESLRLTNLGQCKAGDPVNLERAVLSST 92
Score = 61.9 bits (150), Expect = 2e-13
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 100 SGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYV 159
+G + + V+ +Q N +++ ++ +A++G LT+ +F V
Sbjct: 3 TGLVEAIGVVKDVQGTIDN-GFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFTV 61
Query: 160 HLIPETMEKTTMSKKAVGDALNIEVD 185
+ PE++ T + + GD +N+E
Sbjct: 62 GIAPESLRLTNLGQCKAGDPVNLERA 87
>d1gg4a3 c.98.1.1 (A:1-98) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 25.2 bits (55), Expect = 3.3
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 7/102 (6%)
Query: 23 SMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFV 82
S+T+ +D+L+G + ++ V K+ + + E + A
Sbjct: 3 SVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA----- 57
Query: 83 NLERSAKMNTEVGGHFLSGHIIDVANVR-AIQALEKNYRMEI 123
A + + V + R A L R ++
Sbjct: 58 -KAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQV 98
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 26.3 bits (57), Expect = 4.1
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 11/94 (11%)
Query: 33 LDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNT 92
L G+ V + V G Y+ NL V ++ R
Sbjct: 1272 LRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRI----- 1326
Query: 93 EVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMT 126
+ ID+ V I+A E+
Sbjct: 1327 ------YTNSFIDIMEVLGIEAGRAALYKEVYNV 1354
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395
{Pseudomonas syringae [TaxId: 317]}
Length = 258
Score = 25.3 bits (55), Expect = 6.4
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 142 IDGISLTIGKVFEDYFYV---HLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVER 197
I + IG++ + E M + + AVGD D+Q + ++ E
Sbjct: 148 ITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEE 206
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 831,931
Number of extensions: 36773
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 18
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)