Query psy4643
Match_columns 207
No_of_seqs 115 out of 438
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:03:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1we1_A Heme oxygenase 1; oxido 100.0 3.9E-47 1.3E-51 324.2 19.5 187 7-205 31-217 (240)
2 1wov_A Heme oxygenase 2; HOMO 100.0 1.9E-46 6.6E-51 321.7 16.4 187 7-205 30-220 (250)
3 2q32_A Heme oxygenase 2, HO-2; 100.0 3.2E-45 1.1E-49 316.4 19.8 182 7-200 59-243 (264)
4 1wzd_A Heme oxygenase; electro 100.0 2.2E-45 7.5E-50 308.1 17.9 179 7-197 34-214 (215)
5 1j02_A Heme oxygenase 1; alpha 100.0 8E-45 2.7E-49 314.4 21.2 182 7-200 39-223 (267)
6 1n45_A Heme oxygenase 1, HO-1; 100.0 2.1E-44 7E-49 306.0 21.4 180 7-198 39-221 (233)
7 1sk7_A Hypothetical protein PA 100.0 6.1E-30 2.1E-34 212.0 15.7 160 7-195 37-197 (198)
8 1j77_A HEMO, heme oxygenase; p 100.0 1.7E-28 5.7E-33 205.1 16.6 158 7-195 34-192 (209)
9 3dde_A TENA/THI-4 protein, dom 99.7 4.2E-17 1.4E-21 137.4 11.1 179 8-199 34-222 (239)
10 1rtw_A Transcriptional activat 93.7 1.2 4.2E-05 35.9 12.4 164 8-191 29-202 (220)
11 2f2g_A SEED maturation protein 92.9 0.81 2.8E-05 36.9 9.9 163 8-185 33-208 (221)
12 4fn6_A Thiaminase-2, thiaminas 90.7 4.4 0.00015 32.8 12.2 155 8-178 30-199 (229)
13 2qcx_A Transcriptional activat 90.1 1 3.6E-05 37.7 7.9 165 8-191 57-236 (263)
14 3ibx_A TENA, HP1287, putative 88.7 1.9 6.6E-05 34.8 8.4 154 8-178 34-202 (221)
15 1rcw_A CT610, CADD; iron, DI-i 87.8 3.2 0.00011 33.2 9.2 170 8-194 33-218 (231)
16 3b5o_A CADD-like protein of un 84.2 5.7 0.0002 33.3 8.9 133 48-198 91-229 (244)
17 1udd_A Transcriptional regulat 83.0 9.2 0.00031 30.7 9.7 141 8-164 32-185 (226)
18 3no6_A Transcriptional activat 82.9 18 0.00063 29.7 12.5 149 8-179 49-219 (248)
19 3bjd_A Putative 3-oxoacyl-(acy 82.7 22 0.00077 30.5 14.7 178 8-199 135-327 (332)
20 1z72_A Transcriptional regulat 80.6 3.1 0.00011 33.5 6.0 154 8-179 43-207 (225)
21 2gm8_A TENA homolog/THI-4 thia 76.1 13 0.00046 29.7 8.5 102 8-117 38-147 (221)
22 1wwm_A Hypothetical protein TT 71.6 13 0.00046 29.0 7.3 139 10-172 26-170 (190)
23 3mvu_A TENA family transcripti 71.4 25 0.00087 28.2 9.1 154 8-177 36-206 (226)
24 3oql_A TENA homolog; transcrip 69.7 5.6 0.00019 33.5 4.8 109 81-194 125-244 (262)
25 2qzc_A Transcriptional activat 65.5 27 0.00093 27.6 8.0 102 8-117 34-141 (214)
26 3hlx_A Pyrroloquinoline-quinon 61.8 64 0.0022 26.8 9.9 105 81-196 113-227 (258)
27 3rm5_A Hydroxymethylpyrimidine 60.7 16 0.00055 33.5 6.5 154 8-177 361-529 (550)
28 1u7k_A GAG polyprotein; capsid 43.5 26 0.00088 26.5 4.0 28 154-184 52-79 (131)
29 1l6x_B Minimized B-domain of p 35.2 46 0.0016 19.3 3.2 24 154-179 6-29 (34)
30 4e17_B Catenin alpha-1; four h 33.0 51 0.0018 19.8 3.4 27 169-195 10-36 (40)
31 3mb2_B 4-oxalocrotonate tautom 32.5 43 0.0015 22.7 3.3 20 166-185 11-30 (72)
32 1b4u_A LIGA, LIGB, protocatech 31.4 38 0.0013 25.9 3.3 29 149-179 49-77 (139)
33 3si9_A DHDPS, dihydrodipicolin 28.3 52 0.0018 27.9 4.0 72 107-183 1-87 (315)
34 1u6h_B Talin; protein-protein 22.0 52 0.0018 18.6 1.9 25 169-193 1-25 (31)
No 1
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1
Probab=100.00 E-value=3.9e-47 Score=324.16 Aligned_cols=187 Identities=21% Similarity=0.374 Sum_probs=176.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCCh
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRE 86 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~p 86 (207)
++..|++.|+++|.++|+||.+||++++++.++|++++++.|+|.|+++|++||++|+|++|++ .++|+|
T Consensus 31 ~g~~~~~~Y~~~L~~~y~vy~~LE~~~~~~~~~p~l~~~~~~el~R~~~L~~DL~~l~g~~~~~----------~~~p~~ 100 (240)
T 1we1_A 31 KGVVEKNSYRKLVGNLYFVYSAMEEEMAKFKDHPILSHIYFPELNRKQSLEQDLQFYYGSNWRQ----------EVKISA 100 (240)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTGGGGCCTTSCCHHHHHHHHHHHHCTTHHH----------HCCCCH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCchhHhhhhHhhhhHHHHHHHHHHhcCCCccc----------cCCCCH
Confidence 5789999999999999999999999999999999999999999999999999999999999986 678899
Q ss_pred hHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccceeecCCCChHHHHHHHHHHHHhccc
Q psy4643 87 SVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDEST 166 (207)
Q Consensus 87 a~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~F~~~~~~~~~k~~yr~~ld~l~~ 166 (207)
+++.||+||+++++++|.+++||+||+|||++||||+|+++++.+.++++.|++||.|+++.+.+.+|+.||+.||++
T Consensus 101 a~~~yv~~i~~i~~~~P~~llg~~Yv~y~g~lsGGq~i~~~~~~~l~L~~~g~~fy~f~~~~d~~~~k~~fr~~Ld~l-- 178 (240)
T 1we1_A 101 AGQAYVDRVRQVAATAPELLVAHSYTRYLGDLSGGQILKKIAQNAMNLHDGGTAFYEFADIDDEKAFKNTYRQAMNDL-- 178 (240)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSCGGGCCTTCSSHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcCcccchhcccCCcCCHHHHHHHHHHHHhcC--
Confidence 999999999999999999999999999999999999999997777788888999999997778999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4643 167 QFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTF 205 (207)
Q Consensus 167 ~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~~~~~~~ 205 (207)
++|++++++||+||+.+|++|++||++|++....++.++
T Consensus 179 ~l~~~e~~~ii~eA~~aF~~n~~if~eL~~~~~~~~~~~ 217 (240)
T 1we1_A 179 PIDQATAERIVDEANDAFAMNMKMFNELEGNLIKAIGIM 217 (240)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998887776543
No 2
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A*
Probab=100.00 E-value=1.9e-46 Score=321.66 Aligned_cols=187 Identities=23% Similarity=0.441 Sum_probs=175.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCCh
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRE 86 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~p 86 (207)
++..|++.|+++|.++|+||.+||++++++.++|++++++.|+|.|+++|++||++|+|++|++ .++|+|
T Consensus 30 ~g~~~~~~Y~~~L~~~y~vy~~LE~~~~~~~~~p~l~~~~~~el~R~~~L~~DL~~l~g~~~~~----------~~~p~~ 99 (250)
T 1wov_A 30 KGIVEREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDLTYYYGPNWQQ----------IIQPTP 99 (250)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHCCGGGCCHHHHHHHHHHHHCTTHHH----------HCCCCH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhccHhhhhHHHHHHHHHHHcCCCccc----------cCCCCh
Confidence 4678999999999999999999999999999999999999999999999999999999999986 678999
Q ss_pred hHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccC-cCcccceeecCCC---ChHHHHHHHHHHHH
Q psy4643 87 SVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKS-NYQDQVLSFDPSV---NVGQLKRQIKSILD 162 (207)
Q Consensus 87 a~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~-~~g~~Fy~F~~~~---~~~~~k~~yr~~ld 162 (207)
+++.||+||+++++++|.+++||+||+|||++||||+|+++++.+.+++ +.|++||.|+++. +.+.+|+.||+.||
T Consensus 100 a~~~yv~~i~~i~~~~P~~llgh~Yv~y~g~lsGGq~i~~~l~k~l~L~~~~g~~fy~f~~~~~~~d~~~~k~~fr~~Ld 179 (250)
T 1wov_A 100 CAKIYVDRLKTIAASEPELLIAHCYTRYLGDLSGGQSLKNIIRSALQLPEGEGTAMYEFDSLPTPGDRRQFKEIYRDVLN 179 (250)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCcccceeeccCCccccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987777887 7899999999666 78889999999999
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4643 163 DESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEVLLKTF 205 (207)
Q Consensus 163 ~l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~~~~~~~ 205 (207)
++ ++|++++++||+||+.+|++|++||++|++....++.++
T Consensus 180 ~l--~l~~~e~~~ii~eA~~aF~ln~~if~eL~~~~~~~~~~~ 220 (250)
T 1wov_A 180 SL--PLDEATINRIVEEANYAFSLNREVMHDLEDLIKAAIGEH 220 (250)
T ss_dssp HS--CCCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH
T ss_pred cC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 899999999999999999999999999998888777654
No 3
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A*
Probab=100.00 E-value=3.2e-45 Score=316.40 Aligned_cols=182 Identities=23% Similarity=0.393 Sum_probs=170.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCc-cccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCC
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNIS-DMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPR 85 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~-~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~ 85 (207)
++..+++.|+++|.++|+||.+||++++++.++|++++++.| +|.|+++|++||++|+|.+|++ .++|+
T Consensus 59 ~g~~~~e~Y~~~L~~~y~vy~~LE~~l~~~~~~p~l~~~~~~~el~R~~~L~~DL~~l~G~~w~~----------~~~p~ 128 (264)
T 2q32_A 59 KGNIKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGENWEE----------QVQAP 128 (264)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTGGGCCHHHHCCHHHHHHHHHHHHCTTGGG----------GCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccChHhHhhcCHhhhhhHHHHHHHHHHhcCCCccc----------cCCCC
Confidence 578899999999999999999999999999999999999998 7999999999999999999986 67899
Q ss_pred hhHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccC--cCcccceeecCCCChHHHHHHHHHHHHh
Q psy4643 86 ESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKS--NYQDQVLSFDPSVNVGQLKRQIKSILDD 163 (207)
Q Consensus 86 pa~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~--~~g~~Fy~F~~~~~~~~~k~~yr~~ld~ 163 (207)
|+++.||+||+++++++|.++|||+||||||++||||+|+++++++.+++ +.|++||.|+++.+.+.+|+.||++||+
T Consensus 129 ~a~~~yv~~i~~ia~~~P~~llgh~Yv~y~g~lsGGqii~k~l~k~lgL~~~~~g~~Fy~f~g~~d~~~~k~~fr~~Ld~ 208 (264)
T 2q32_A 129 KAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNA 208 (264)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCTTCGGGCCTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCCccceeeccCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999987777887 5799999999777899999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 164 ESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEV 200 (207)
Q Consensus 164 l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~~ 200 (207)
+ +||++++++||+||+.+|++|++||++|++.+..
T Consensus 209 l--~ld~ee~~~iI~eA~~aF~ln~~if~eL~~~~~~ 243 (264)
T 2q32_A 209 L--DLNMKTKERIVEEANKAFEYNMQIFNELDQAGST 243 (264)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8 8999999999999999999999999999876543
No 4
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=100.00 E-value=2.2e-45 Score=308.08 Aligned_cols=179 Identities=21% Similarity=0.352 Sum_probs=169.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCC-CCCCCCCCCCccccCCCC
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPD-WKADYKPRPDWKADYKPR 85 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~-w~~~~~~~~~~~~~~~~~ 85 (207)
++..|++.|+++|.++|+||.+||++++++.++|++++++.|++.|+++|++||++|.|++ |++ .++|+
T Consensus 34 ~g~~~~~~Y~~~L~~~y~vy~~lE~~~~~~~~~p~~~~~~~~el~R~~~l~~DL~~l~~~~~w~~----------~~~~~ 103 (215)
T 1wzd_A 34 KGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRS----------RITAS 103 (215)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTSCGGGCCHHHHHHHHHHHHSSSTHHH----------HCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccCchhhhhccchhccHHHHHHHHHHHcCCcchhh----------cCCCC
Confidence 4789999999999999999999999999999899999999999999999999999999988 986 67899
Q ss_pred hhHHHHHHHHHHhhccC-cchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccceeecCCCChHHHHHHHHHHHHhc
Q psy4643 86 ESVVNYLNHLEDLKQTN-DTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDE 164 (207)
Q Consensus 86 pa~~~yv~~i~~~~~~~-P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~F~~~~~~~~~k~~yr~~ld~l 164 (207)
|+++.|+++|+++++++ |.+++||+||+|+|++||||+|+++++.+.++++.|++||.|++..+.+.+|+.||+.||++
T Consensus 104 ~a~~~yv~~i~~~~~~~~p~~~lg~~Yv~YeG~~~GGq~i~~~~~~~l~l~~~g~~f~~~~~~~~~~~~~~~fr~~Ld~~ 183 (215)
T 1wzd_A 104 PAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNL 183 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGCGGGCCTTCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcCcccceeeecCCcCCHHHHHHHHHHHHhcC
Confidence 99999999999999889 99999999999999999999999998777788889999999996678999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 165 STQFSRQTREQLLAESRKVFLLNNSIIKCVLEL 197 (207)
Q Consensus 165 ~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~ 197 (207)
++|++++++||+||+.+|++|++||++|++.
T Consensus 184 --~~~~~~~~~ii~eA~~aF~~~~~i~~el~~~ 214 (215)
T 1wzd_A 184 --ELSDEQREHLLKEATDAFVFNHQVFADLGKG 214 (215)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999854
No 5
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A*
Probab=100.00 E-value=8e-45 Score=314.38 Aligned_cols=182 Identities=22% Similarity=0.404 Sum_probs=170.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCc-cccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCC
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNIS-DMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPR 85 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~-~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~ 85 (207)
++..+++.|+++|.++|+||.+||++++++.++|++++++.| +|.|+++|++||++|+|.+|++ .++|+
T Consensus 39 ~g~vs~e~Y~~~L~~~y~vy~aLE~~l~~~~~~p~l~~~~~peel~R~~~L~~DL~~l~G~~w~~----------~~~p~ 108 (267)
T 1j02_A 39 KGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQE----------AIPYT 108 (267)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTGGGCCHHHHCCHHHHHHHHHHHHCTTGGG----------TSCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHhcCHhhhhhHHHHHHHHHHhcCCCccc----------cCCCC
Confidence 467899999999999999999999999999999999999999 8999999999999999999987 67899
Q ss_pred hhHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccC--cCcccceeecCCCChHHHHHHHHHHHHh
Q psy4643 86 ESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKS--NYQDQVLSFDPSVNVGQLKRQIKSILDD 163 (207)
Q Consensus 86 pa~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~--~~g~~Fy~F~~~~~~~~~k~~yr~~ld~ 163 (207)
|++..||++|+++++++|.++|||+||+|||++||||+|+++++.+.+++ +.|++||.|+++.+.+.+|+.||+.||+
T Consensus 109 ~a~~~yv~~i~~ia~~~P~~llgh~Yv~y~g~lsGGqii~k~l~k~lgL~~~~~gl~Fy~f~g~~d~~~~k~~fr~~Ld~ 188 (267)
T 1j02_A 109 PATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNT 188 (267)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTCCTTCTTCGGGCCTTCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccCCcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999977777887 4799999999777899999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 164 ESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLEV 200 (207)
Q Consensus 164 l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~~ 200 (207)
+ +||++++++||+||+.+|++|+.||++|+.....
T Consensus 189 l--~ld~ee~~~iI~eA~~aF~ln~~if~eL~~~~~~ 223 (267)
T 1j02_A 189 L--EMTPEVKHRVTEEAKTAFLLNIELFEELQALLTE 223 (267)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8 7999999999999999999999999999876643
No 6
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ...
Probab=100.00 E-value=2.1e-44 Score=305.99 Aligned_cols=180 Identities=24% Similarity=0.425 Sum_probs=169.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCc-cccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCC
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNIS-DMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPR 85 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~-~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~ 85 (207)
++..+++.|+++|.++|+||.+||++++++.++|++++++.| +|.|+++|++||++|.|++|++ .++|+
T Consensus 39 ~g~~~~~~Y~~~L~~~y~vy~~lE~~~~~~~~~p~~~~~~~~~el~R~~~L~~DL~~l~g~~~~~----------~~~~~ 108 (233)
T 1n45_A 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQE----------VIPYT 108 (233)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTGGGCCHHHHCCHHHHHHHHHHHHCTTGGG----------TSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhcCHhhcccHHHHHHHHHHhcCCCccc----------cCCCC
Confidence 467899999999999999999999999999999999999998 8999999999999999999986 67899
Q ss_pred hhHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccC--cCcccceeecCCCChHHHHHHHHHHHHh
Q psy4643 86 ESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKS--NYQDQVLSFDPSVNVGQLKRQIKSILDD 163 (207)
Q Consensus 86 pa~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~--~~g~~Fy~F~~~~~~~~~k~~yr~~ld~ 163 (207)
|+++.||++|++++.++|.+|+||+||+|+|++||||+|+++++.+.+++ +.|++||.|+++.+.+.+|..||+.||+
T Consensus 109 ~a~~~yv~~i~~i~~~~P~~l~ah~Yv~YeG~~~GGq~i~~~~~~~l~L~~~~~g~~f~~f~~~~~~~~~k~~fr~~Ld~ 188 (233)
T 1n45_A 109 PAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNS 188 (233)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSCSCGGGCCTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccCCcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999977777887 4799999999777899999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 164 ESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELL 198 (207)
Q Consensus 164 l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~ 198 (207)
+ ++|++++++||+||+.+|++|+.||++|+...
T Consensus 189 ~--~l~~~e~~~ii~eA~~aF~~n~~i~~el~~~~ 221 (233)
T 1n45_A 189 L--EMTPAVRQRVIEEAKTAFLLNIQLFEELQELL 221 (233)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 79999999999999999999999999998654
No 7
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2
Probab=99.97 E-value=6.1e-30 Score=212.04 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=136.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCCh
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRE 86 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~p 86 (207)
++..+++.|+++|.++|++|.++|.+++.+..+|++. ..+++.|+++|++||+++ |.+|++ .+ +.|
T Consensus 37 ~g~~~~~~Y~~~L~~~y~~y~~lE~~l~~~~~~~~~~--~~~e~~R~~~L~~DL~~l-g~~~~~----------~i-~~p 102 (198)
T 1sk7_A 37 EPFASRDNFARFVAAQYLFQHDLEPLYRNEALARLFP--GLASRARDDAARADLADL-GHPVPE----------GD-QSV 102 (198)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHST--TGGGGCCHHHHHHHHHHH-TCCCCC----------CC-CTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccccC--chHhhhhHHHHHHHHHHh-CCCCcc----------cC-CCc
Confidence 5788999999999999999999999999987778765 468999999999999999 667886 44 334
Q ss_pred hHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccC-cCcccceeecCCCChHHHHHHHHHHHHhcc
Q psy4643 87 SVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKS-NYQDQVLSFDPSVNVGQLKRQIKSILDDES 165 (207)
Q Consensus 87 a~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~-~~g~~Fy~F~~~~~~~~~k~~yr~~ld~l~ 165 (207)
++ ..-+|..++|+.||+ .|+++|||+|+++++ ..+++ +.|++||.|+++.+.+.+| .||+.||++
T Consensus 103 ~~----------~~~~~~~~lG~~YV~-eGs~lGGq~l~~~~~-~l~l~~~~g~~f~~~~~~~~~~~wk-~f~~~Ld~l- 168 (198)
T 1sk7_A 103 RE----------ADLSLAEALGWLFVS-EGSKLGAAFLFKKAA-ALELDENFGARHLAEPEGGRAQGWK-SFVAILDGI- 168 (198)
T ss_dssp TT----------SCCCHHHHHHHHHHH-HHTTTTHHHHHHHHG-GGTCBTTBBCGGGSCCTTCHHHHHH-HHHHHHHHC-
T ss_pred cc----------ccCChHHHHHHHHHH-HHHHHHHHHHHHHHH-HcCCCcccchHhhCCCCccchHHHH-HHHHHHhCC-
Confidence 33 112455688999999 699999999999976 66776 4799999999666677776 699999998
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 166 TQFSRQTREQLLAESRKVFLLNNSIIKCVL 195 (207)
Q Consensus 166 ~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~ 195 (207)
++|++++++||+||+.+|.+|..+++++-
T Consensus 169 -~~d~~~~~~ii~~A~~aF~l~~~~l~~~~ 197 (198)
T 1sk7_A 169 -ELNEEEERLAAKGASDAFNRFGDLLERTF 197 (198)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999863
No 8
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
Probab=99.96 E-value=1.7e-28 Score=205.09 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=133.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCccccCCCCh
Q psy4643 7 GAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPRE 86 (207)
Q Consensus 7 ~~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~~~~~p 86 (207)
++..+++.|+++|.++|+||.++|.+++.+..+|++. ..|++.|+++|++||++| |.+ ++ .+++.+
T Consensus 34 ~g~~~~~~Y~~~L~~~y~~y~~lE~~l~~~~~~~~~~--~~~e~~R~~~L~~DL~~l-G~~-~~----------~v~~~~ 99 (209)
T 1j77_A 34 QPFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIP--ELEYMARYDAVTQDLKDL-GEE-PY----------KFDKEL 99 (209)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHST--TGGGGCCHHHHHHHHHHT-TCC-CC----------CCSSCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCcccC--ChHhhhhHHHHHHHHHHh-CCC-hh----------hccCCC
Confidence 5789999999999999999999999999987778765 468999999999999999 766 43 332211
Q ss_pred hHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccC-cCcccceeecCCCChHHHHHHHHHHHHhcc
Q psy4643 87 SVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKS-NYQDQVLSFDPSVNVGQLKRQIKSILDDES 165 (207)
Q Consensus 87 a~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~-~~g~~Fy~F~~~~~~~~~k~~yr~~ld~l~ 165 (207)
+ . -+|..++|+.||+ .|+++|||+|+++++ ..+++ +.|++||.|+++ .....|+.||+.||++
T Consensus 100 ~---------~---~~~~~~~G~~YV~-eGs~lGGq~l~k~~~-~l~l~~~~g~~f~~~~~~-~~~~~w~~fr~~Ld~l- 163 (209)
T 1j77_A 100 P---------Y---EAGNKAIGWLYCA-EGSNLGAAFLFKHAQ-KLDYNGEHGARHLAPHPD-GRGKHWRAFVEHLNAL- 163 (209)
T ss_dssp C---------C---CCHHHHHHHHHHH-HHHHHTTHHHHHHHH-TTTCBTTBBCGGGSCCTT-CHHHHHHHHHHHHHHT-
T ss_pred C---------C---CChHHHHHHHHHH-HHHHHHHHHHHHHHH-HcCCCcccchhhhCCCCc-ccHHHHHHHHHHHHcC-
Confidence 0 1 1445688999998 688899999999976 66776 479999999954 5555577999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 166 TQFSRQTREQLLAESRKVFLLNNSIIKCVL 195 (207)
Q Consensus 166 ~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~ 195 (207)
++|++++++||+||+.+|.+|..||++|.
T Consensus 164 -~~d~~~~~~ii~~A~~aF~l~~~~f~~l~ 192 (209)
T 1j77_A 164 -NLTPEAEAEAIQGAREAFAFYKVVLRETF 192 (209)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999997
No 9
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=99.71 E-value=4.2e-17 Score=137.44 Aligned_cols=179 Identities=11% Similarity=0.073 Sum_probs=140.9
Q ss_pred CCCChHHHHHHHHHHHHHHHH----HHHHHHHhhcCc--c---ccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCc
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKF----LESAMEEHKSNQ--Y---LQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDW 78 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~a----LE~al~~~~~~p--~---l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~ 78 (207)
|-.+++.|+.+|.+.|+++.. ++.+..+..+.+ . +.....+++.+-..+.+|++.+ |.++.+
T Consensus 34 GtL~~~~f~~yl~Qdy~yl~~~~r~la~a~~ka~~~~~~~~~~~~~~~~~e~~~e~~~~~~l~~~-G~~~~~-------- 104 (239)
T 3dde_A 34 GKATKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASI-GFDRED-------- 104 (239)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHTTTHHHHHHHHHHT-TCCHHH--------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHh-CCCHHH--------
Confidence 558999999999999999865 777777765555 2 2333446777777899998887 877643
Q ss_pred cccCCCChhHHHHHHHHHHhhc-cCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccceeecCCCChHHHHHHH
Q psy4643 79 KADYKPRESVVNYLNHLEDLKQ-TNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQI 157 (207)
Q Consensus 79 ~~~~~~~pa~~~yv~~i~~~~~-~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~F~~~~~~~~~k~~y 157 (207)
+...+|+|+|.+|++++...+. .+|..++||+|+....--+|||+++.. ....++++.+++||.|.+..+.+.++ .|
T Consensus 105 ~~~~~~~pat~aY~~~l~~~a~~~~~~~~la~~~~~E~~y~~~~~~~~~l-~~~~~l~~~~~~f~~~h~~~d~~h~~-~~ 182 (239)
T 3dde_A 105 VLSSKPLPATETLIAYLYWISATGNPVQRLGYSYWAENVYGYIDPVLKAI-QSTLDLTPQSMKFFIAHSKIDAKHAE-EV 182 (239)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHSSCGGGGHHHHHHHHTCHHHHHHHHHHH-HHHTTCCGGGGHHHHHHHHHHHHHHH-HH
T ss_pred HHhCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCcCHHHHHHHHHHHhcchhHHH-HH
Confidence 1235789999999999998875 689999999997322113799986443 34556777789999999666777775 79
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 158 KSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLE 199 (207)
Q Consensus 158 r~~ld~l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~ 199 (207)
++.||.+ +.|++++++||++|+.+|++|.++|++|...-.
T Consensus 183 ~~~ld~~--~~~~~~~~~ii~~a~~~~~l~~~~f~~l~~~~~ 222 (239)
T 3dde_A 183 NEMLHEV--CKTQEDVDSVVAVMENSLVLTARILDDVWKEYQ 222 (239)
T ss_dssp HHHHHHH--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 789999999999999999999999999987643
No 10
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=93.75 E-value=1.2 Score=35.90 Aligned_cols=164 Identities=10% Similarity=-0.022 Sum_probs=93.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccCCCCccccChH----HHHHH---HhHhhCCCCCCCCCCCCCcc
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKS-NQYLQQFNISDMKRTE----AFEAD---LEHYLGPDWKADYKPRPDWK 79 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~-~p~l~~l~~~~L~R~~----~L~~D---L~~l~g~~w~~~~~~~~~~~ 79 (207)
|-.+++.|+.+|.+=|..-..+=.++..... .|..... +.+.+.. .+|.+ ++.+ |-+.
T Consensus 29 GtL~~~~f~~YL~QDy~yl~~f~r~~a~~~~ka~~~~~~--~~~~~l~~~~~~iE~~lh~~~~~-Gi~~----------- 94 (220)
T 1rtw_A 29 NTIKKENFEKWLVNDYYFVKNALRFMALLMAKAPDDLLP--FFAESIYYISKELEMFEKKAQEL-GISL----------- 94 (220)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHHHHHHHHHHHHHHHHT-TCCS-----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHC-CCCC-----------
Confidence 4578999999999998888777777665432 1110000 0011111 01223 2333 4332
Q ss_pred ccCCCChhHHHHHHHHHHhhc-cCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCc-ccceeecCCCChHHHHHHH
Q psy4643 80 ADYKPRESVVNYLNHLEDLKQ-TNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQ-DQVLSFDPSVNVGQLKRQI 157 (207)
Q Consensus 80 ~~~~~~pa~~~yv~~i~~~~~-~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g-~~Fy~F~~~~~~~~~k~~y 157 (207)
..+|+|+|.+|++++..++. .++..++|..+.-+.+=..=|+.+.+.. . ++.. ..+.+.+++.+-...-...
T Consensus 95 -~~~~~p~t~aY~~~l~~~a~~~~~~~~laAl~pc~~~Y~~i~~~l~~~~----~-~~~~y~~Wi~~y~~~~f~~~v~~~ 168 (220)
T 1rtw_A 95 -NGEIDWRAKSYVNYLLSVASLGSFLEGFTALYCEEKAYYEAWKWVRENL----K-ERSPYQEFINHWSSQEFGEYVKRI 168 (220)
T ss_dssp -SSCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC----S-SCCTTHHHHHHHHSHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhcc----C-CCchHHHHHHHhCCHHHHHHHHHH
Confidence 24688999999999999875 4666677777766555443344443321 1 1111 2333344222224455677
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 158 KSILDDESTQFSRQTREQLLAESRKVFLLNNSII 191 (207)
Q Consensus 158 r~~ld~l~~~l~~~e~~~iv~EA~~aF~ln~~i~ 191 (207)
++.+|+++...|+++++++.+--..+-++-..-+
T Consensus 169 ~~~ld~~~~~~~~~~~~~~~~~f~~a~~lE~~Fw 202 (220)
T 1rtw_A 169 EKILNSLAEKHGEFEKERAREVFKEVSKFELIFW 202 (220)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888988767788888776665555555444333
No 11
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A*
Probab=92.91 E-value=0.81 Score=36.91 Aligned_cols=163 Identities=10% Similarity=-0.044 Sum_probs=89.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccC-------C---CCccccChHHHHHHHhHhhCCCCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSN-QYLQQ-------F---NISDMKRTEAFEADLEHYLGPDWKADYKPRP 76 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~-p~l~~-------l---~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~ 76 (207)
|-.+++.|+.+|.+=|+.-..+=.++...... |.... + ... +..-..+-+++..-+|-+. +
T Consensus 33 GtL~~~~f~~yL~QDy~yl~~f~r~~a~~~~ka~~~~~~~~~~~~l~~~~~~-~~~E~~~h~~~~~~~Gi~~-~------ 104 (221)
T 2f2g_A 33 GSVDLSSFRTWLGQDYLFVRRFVPFVASVLIRACKDSGESSDMEVVLGGIAS-LNDEIEWFKREGSKWDVDF-S------ 104 (221)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCG-G------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCh-h------
Confidence 44567889999998888777666665554320 10000 0 000 1112233333322235442 1
Q ss_pred CccccCCCChhHHHHHHHHHHh-hc-cCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccceeecCCCChHHHH
Q psy4643 77 DWKADYKPRESVVNYLNHLEDL-KQ-TNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLK 154 (207)
Q Consensus 77 ~~~~~~~~~pa~~~yv~~i~~~-~~-~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~F~~~~~~~~~k 154 (207)
..+|+|+|.+|++++..+ +. .++..+++-.+.-+.+=..=|+.+.+..... +..=..+.+.+++.+=...-
T Consensus 105 ----~~~~~p~~~aY~~~l~~~~~~~~~~~~~~aAl~pc~~~Y~~i~~~l~~~~~~~---~~~y~~Wi~~y~~~~f~~~v 177 (221)
T 2f2g_A 105 ----TVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKT---PVELTGACHRWGNDGFKQYC 177 (221)
T ss_dssp ----GCCCCHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHHHTS---SSCCCHHHHHHSSHHHHHHH
T ss_pred ----hcCCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CcHHHHHHHHhCCHHHHHHH
Confidence 467899999999999998 65 4666676766666555544455444321111 11112333334222224556
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy4643 155 RQIKSILDDESTQFSRQTREQLLAESRKVFL 185 (207)
Q Consensus 155 ~~yr~~ld~l~~~l~~~e~~~iv~EA~~aF~ 185 (207)
...++.+|+++...|+++++++.+--..+-+
T Consensus 178 ~~~~~~ld~~~~~~~~~~~~~~~~~f~~a~~ 208 (221)
T 2f2g_A 178 SSVKNIAERCLENASGEVLGEAEDVLVRVLE 208 (221)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 6788889988767788888765554444433
No 12
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=90.74 E-value=4.4 Score=32.85 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=85.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-cc----------ccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSN-QY----------LQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRP 76 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~-p~----------l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~ 76 (207)
|-.+++.|+.+|.+=|+.-..+=.++...... |. +..+...|+ .+-.++..-+|-+..+
T Consensus 30 GtL~~~~f~~YL~QDy~yl~~~~r~~a~~~aka~~~~~~~~~~~~~~~~~~~E~----~~h~~~~~~~gi~~~~------ 99 (229)
T 4fn6_A 30 GNIQADALRHYLQADAAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGEV----LAHDILAQIVGESYEE------ 99 (229)
T ss_dssp TCCCHHHHHHHHHHHHHTHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHTSCHHH------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCHHH------
Confidence 45789999999999999888888877665321 10 000001111 2333332223544221
Q ss_pred Ccc-ccCCCChhHHHHHHHHHHhhcc--CcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCc-ccceeecCCCChHH
Q psy4643 77 DWK-ADYKPRESVVNYLNHLEDLKQT--NDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQ-DQVLSFDPSVNVGQ 152 (207)
Q Consensus 77 ~~~-~~~~~~pa~~~yv~~i~~~~~~--~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g-~~Fy~F~~~~~~~~ 152 (207)
+ ...+|+|+|.+|++++..++.+ ++..+++..+.-+.+=.-=|+-+.+. ....++.. -.+-+.++ ++-..
T Consensus 100 --~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~---~~~~~~~~y~~WI~~y~-~~f~~ 173 (229)
T 4fn6_A 100 --IIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSD---HKLNREKDTAKWFDFYS-TEMDD 173 (229)
T ss_dssp --HHHSCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTC---TTCCTTSTHHHHHHHHT-TTTHH
T ss_pred --HhhhcCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCChHHHHHHHHh-HHHHH
Confidence 1 1457899999999999998865 55555555443332221223322221 10001100 11122232 34456
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHHH
Q psy4643 153 LKRQIKSILDDESTQFSRQTREQLLA 178 (207)
Q Consensus 153 ~k~~yr~~ld~l~~~l~~~e~~~iv~ 178 (207)
.-+..++.+|+++...++++++++.+
T Consensus 174 ~v~~~~~~ld~~~~~~~~~~~~~~~~ 199 (229)
T 4fn6_A 174 IINVFESLMNKLAESMSDKELEQVKQ 199 (229)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 66678889999887788888876554
No 13
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=90.05 E-value=1 Score=37.68 Aligned_cols=165 Identities=8% Similarity=0.017 Sum_probs=91.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccCCCCccccCh-----------HHHHHHHhHhhCCCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKS-NQYLQQFNISDMKRT-----------EAFEADLEHYLGPDWKADYKPR 75 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~-~p~l~~l~~~~L~R~-----------~~L~~DL~~l~g~~w~~~~~~~ 75 (207)
|-.+++.|+.+|.+=|..-..+=.++..... .|. ...+.+. -.+-+++..-+|-+..+
T Consensus 57 GtL~~e~f~~YL~QDy~yL~~f~r~la~a~aka~~-----~~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~----- 126 (263)
T 2qcx_A 57 GTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKD-----LYTTGRMASHAQGTYEAEMALHREFAELLEISEEE----- 126 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-----
Confidence 4578899999999998888877777666532 110 0111111 12222222223543221
Q ss_pred CCccccCCCChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcC-c-ccceeecCCCChHH
Q psy4643 76 PDWKADYKPRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNY-Q-DQVLSFDPSVNVGQ 152 (207)
Q Consensus 76 ~~~~~~~~~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~-g-~~Fy~F~~~~~~~~ 152 (207)
+...+|+|+|.+|++++..++.+ ++..++|-.+.-+.+=..=|+.|.+. ..+. . ..+.+.+++.+=..
T Consensus 127 ---l~~~~~~pat~aYt~~l~~~a~~g~~~~~laAl~pC~w~Y~~ig~~l~~~------~~~~~~Y~~WI~~y~~~df~~ 197 (263)
T 2qcx_A 127 ---RKAFKPSPTAYSFTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHC------DPGHPIYQKWIGTYGGDWFRQ 197 (263)
T ss_dssp ---HHSCCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTC------CCCSHHHHHHHHHHSSHHHHH
T ss_pred ---HhhCCCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc------cCCCcHHHHHHHHhCCHHHHH
Confidence 12467899999999999998764 56666666666443332213222211 1111 0 12333342222235
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 153 LKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSII 191 (207)
Q Consensus 153 ~k~~yr~~ld~l~~~l~~~e~~~iv~EA~~aF~ln~~i~ 191 (207)
.-...++.+|+++...|+++++++.+--..+-++-..-+
T Consensus 198 ~v~~~~~lld~l~~~~s~~~~~~l~~~F~~a~~lE~~Fw 236 (263)
T 2qcx_A 198 QVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFW 236 (263)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888988767788888776665555555444433
No 14
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=88.68 E-value=1.9 Score=34.79 Aligned_cols=154 Identities=12% Similarity=-0.060 Sum_probs=82.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhc-Ccc----------ccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKS-NQY----------LQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRP 76 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~-~p~----------l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~ 76 (207)
|-.+++.|+.+|.+=|+.-..+=.++..... .|. +..+...|+ .+-.++..-+|-+..+
T Consensus 34 GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~aka~~~~~~~~~~~~~~~~~~~E~----~~h~~~~~~~Gi~~~~------ 103 (221)
T 3ibx_A 34 GTLERDKFRFYIIQDYLYLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEM----SIHNHYIRELQITQKE------ 103 (221)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTT----SHHHHHHHHTTCCHHH------
T ss_pred CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCHHH------
Confidence 4578999999999999888877777665432 110 000001111 2223322223443211
Q ss_pred CccccCCCChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccce---eecCCCChHH
Q psy4643 77 DWKADYKPRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVL---SFDPSVNVGQ 152 (207)
Q Consensus 77 ~~~~~~~~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy---~F~~~~~~~~ 152 (207)
+...+|+|+|.+|++++..++.+ ++..+++..+.-+.+=.-=|+.+.+. . -...+..|. +.+++++=..
T Consensus 104 --~~~~~~~p~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~---~--~~~~~~~y~~WI~~y~~~~f~~ 176 (221)
T 3ibx_A 104 --LQNACPTLANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQI---P--NALEHAFYGHWIKGYSSKEFQA 176 (221)
T ss_dssp --HHHCCCCHHHHHHHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCS---S--STTTCTTTHHHHHHTTSHHHHH
T ss_pred --HhhccCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCCCCChHHHHHHHhCCHHHHH
Confidence 12357899999999999998764 55555555554433322224333221 0 001122222 2232222334
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHHH
Q psy4643 153 LKRQIKSILDDESTQFSRQTREQLLA 178 (207)
Q Consensus 153 ~k~~yr~~ld~l~~~l~~~e~~~iv~ 178 (207)
.-+..++.+|+++...|+++++++.+
T Consensus 177 ~v~~~~~~ld~~~~~~~~~~~~~~~~ 202 (221)
T 3ibx_A 177 CVNWNINLLDSLTLASSKQEIEKLKE 202 (221)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 55567888899877788888875543
No 15
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=87.82 E-value=3.2 Score=33.15 Aligned_cols=170 Identities=10% Similarity=0.023 Sum_probs=89.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-cc--ccCC----CCcc----ccChHHHHHHHhHhhCCCCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSN-QY--LQQF----NISD----MKRTEAFEADLEHYLGPDWKADYKPRP 76 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~-p~--l~~l----~~~~----L~R~~~L~~DL~~l~g~~w~~~~~~~~ 76 (207)
|-.+++.++.+|.+-|+.-..+=..+...... |. .... ...+ -.=.+...+.++.+ |-+..+
T Consensus 33 G~L~~e~~~~yl~qdy~yl~~f~~~~a~~~~~~~~~~~~~~~~~~i~~e~~~~~~h~~l~~~~~~~~-Gi~~~~------ 105 (231)
T 1rcw_A 33 GELTKEQLQAYAKDYYLHIKAFPKYLSAIHSRCDDLEARKLLLDNLMDEENGYPNHIDLWKQFVFAL-GVTPEE------ 105 (231)
T ss_dssp TCCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHT-TCCHHH------
T ss_pred CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHc-CCCHHH------
Confidence 45678999999999777666665555443221 10 0000 0000 11133334444444 554221
Q ss_pred CccccCCCChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhhhchhHHHHHHHHHhh---ccC-cCcccceeecCCCChH
Q psy4643 77 DWKADYKPRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGVLSGGQIINKKRQLSL---MKS-NYQDQVLSFDPSVNVG 151 (207)
Q Consensus 77 ~~~~~~~~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~---~l~-~~g~~Fy~F~~~~~~~ 151 (207)
+...+|+|++..|++++-..+.+ +|...+|..++ |-.. |.++..+...... +.. +.+..||.-....+ .
T Consensus 106 --~~~~~~~p~t~~y~~~~~~~~~~~~~~~~laal~~-~E~~--~~~~~~~~~~~~~~~~~wi~~~~~~~f~~h~~~d-~ 179 (231)
T 1rcw_A 106 --LEAHEPSEAAKAKVATFMRWCTGDSLAAGVAALYS-YESQ--IPRIAREKIRGLTEYFGFSNPEDYAYFTEHEEAD-V 179 (231)
T ss_dssp --HHHCCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHH-HHTT--HHHHHHHHHHHHHHHSCCCSGGGGHHHHHHHHHH-H
T ss_pred --HhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHh-H
Confidence 12356889999999999998765 55556666542 3222 5554443321101 111 13444443321111 2
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 152 QLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCV 194 (207)
Q Consensus 152 ~~k~~yr~~ld~l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL 194 (207)
+--...++.+|.++. ++++++++.++.+.++-...++.+
T Consensus 180 ~h~~~~~~~l~~~~~----~~~~~~~~~~~~~~~le~~fwd~~ 218 (231)
T 1rcw_A 180 RHAREEKALIEMLLK----DDADKVLEASQEVTQSLYGFLDSF 218 (231)
T ss_dssp HHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233466677887742 456677888777777776666654
No 16
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=84.20 E-value=5.7 Score=33.27 Aligned_cols=133 Identities=8% Similarity=-0.008 Sum_probs=85.0
Q ss_pred ccccChHHHHHHHh-HhhCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHhhccCcchHHHHHHHHHHhhhc----hhH
Q psy4643 48 SDMKRTEAFEADLE-HYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLS----GGQ 122 (207)
Q Consensus 48 ~~L~R~~~L~~DL~-~l~g~~w~~~~~~~~~~~~~~~~~pa~~~yv~~i~~~~~~~P~~LlAh~Yv~Ylgdls----GGq 122 (207)
++..-..-+++=|+ .+ |-+|.. ..|+|+|+.|++.+.++...+|...+|-.|--.---.. =++
T Consensus 91 ~~~~H~~lyRr~L~~~l-Gld~~~-----------~~p~~sT~~~idt~~~lcs~d~~~aLGA~yatE~iaipe~~ly~~ 158 (244)
T 3b5o_A 91 GGISHYTLLADGLEEGL-GVAVKN-----------TMPSVATSKLLRTVLSLFDRQVDYVLGATYAIEATSIPELTLIVK 158 (244)
T ss_dssp TTCCHHHHHHHHHHHHH-CCCCTT-----------CCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhc-CCCccc-----------cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 34456667777777 66 888753 47889999999999999866787777766533222111 123
Q ss_pred HHHHHHHHhhccCcCcccceeecCCCCh-HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 123 IINKKRQLSLMKSNYQDQVLSFDPSVNV-GQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELL 198 (207)
Q Consensus 123 ii~~~~~~a~~l~~~g~~Fy~F~~~~~~-~~~k~~yr~~ld~l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~ 198 (207)
++... ...+++...+.||++. .... ..=.+..+..++.. .+++++.++++.++.+-.....+.+.|....
T Consensus 159 li~gL--~~~~~~~~~l~FF~~H-idelE~~Ha~~l~~~l~~~---~~~eef~~~~~G~~~~Lda~~~fWdgL~~~~ 229 (244)
T 3b5o_A 159 LVEWL--HEGAIPKDLQYFFSKH-LDEWEIEHEAGLRTSVAAY---IQPEEFGEFAAGFRAMIDAMQVWWQELAQEA 229 (244)
T ss_dssp HHHHH--CSSCCCHHHHHHHHHH-HC-------CHHHHHHHTT---CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HhCCCchhHHHHHHHH-hhhhHHHHHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 0112333456899887 3322 33345556666554 4557789999999999999999999888765
No 17
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=83.03 E-value=9.2 Score=30.75 Aligned_cols=141 Identities=11% Similarity=-0.035 Sum_probs=74.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccC-----------hHHHHHHHhHhhCCCCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKR-----------TEAFEADLEHYLGPDWKADYKPRP 76 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~p~l~~l~~~~L~R-----------~~~L~~DL~~l~g~~w~~~~~~~~ 76 (207)
|-.+++.|+.+|.+=|..-..+=.++...... .......+ --.+-+++..-+|-+..+
T Consensus 32 GtL~~~~f~~YL~QDy~yl~~f~r~~a~~~~k-----a~~~~~~~l~~~~~~~i~~E~~lh~~~~~~~Gi~~~~------ 100 (226)
T 1udd_A 32 GTLPLEKFKFYVLQDFNYLVGLTRALAVISSK-----AEYPLMAELIELARDEVTVEVENYVKLLKELDLTLED------ 100 (226)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCTTHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCHHH------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------
Confidence 45788999999999888877766666554321 11111111 112333332223543221
Q ss_pred CccccCCCChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCc-ccceeecCCCChHHHH
Q psy4643 77 DWKADYKPRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQ-DQVLSFDPSVNVGQLK 154 (207)
Q Consensus 77 ~~~~~~~~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g-~~Fy~F~~~~~~~~~k 154 (207)
+...+|+|+|.+|++++..++.+ ++..++|-.++-+.+=..=|+.+.+. ....++.. ..+.+.+++.+-...-
T Consensus 101 --~~~~~~~p~t~aY~~~l~~~a~~~~~~~~laAl~pc~~~Y~~ig~~l~~~---~~~~~~~~y~~Wi~~y~~~~f~~~v 175 (226)
T 1udd_A 101 --AIKTEPTLVNSAYMDFMLATAYKGNIIEGLTALLPCFWSYAEIAEYHKDK---LRDNPIKIYREWGKVYLSNEYLNLV 175 (226)
T ss_dssp --HHHSCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTHHH---HTTCSCHHHHHHHHGGGSHHHHHHH
T ss_pred --HhhCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCchHHHHHHHhCCHHHHHHH
Confidence 12367899999999999998754 56666666666555443334444332 11111110 2333344222223445
Q ss_pred HHHHHHHHhc
Q psy4643 155 RQIKSILDDE 164 (207)
Q Consensus 155 ~~yr~~ld~l 164 (207)
+..++.+|++
T Consensus 176 ~~~~~lld~~ 185 (226)
T 1udd_A 176 GRLRKIIDSS 185 (226)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhC
Confidence 5666777765
No 18
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=82.94 E-value=18 Score=29.70 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=82.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCCCCccccChH-----------HHHHHHhHhhCCCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSN-QYLQQFNISDMKRTE-----------AFEADLEHYLGPDWKADYKPR 75 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~-p~l~~l~~~~L~R~~-----------~L~~DL~~l~g~~w~~~~~~~ 75 (207)
|-.+++.++.+|.+=|..-..+=.++...... |. .+.+.+.. .+-.+...-+|-+..+
T Consensus 49 GtL~~e~F~~YL~QD~~YL~~far~~a~a~aka~~-----~~~~~~~~~~~~~~~~~E~~lh~~~~~~~gi~~~~----- 118 (248)
T 3no6_A 49 GKLSNQAVRQYLRADASYLKEFTNIYAMLIPKMSS-----MEDVKFLVEQIEFMLEGEVEAHEVLADFINEPYEE----- 118 (248)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSC-----HHHHHHHHHHHHHHHTCCCHHHHHHHHHTTSCHHH-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-----
Confidence 45788999999999888888887777665331 10 01111111 2222322223443221
Q ss_pred CCcc-ccCCCChhHHHHHHHHHHhhcc--CcchHHHH---HHHHHHhhhchhHHHHHHHHHhhccCc--C--cccceeec
Q psy4643 76 PDWK-ADYKPRESVVNYLNHLEDLKQT--NDTLLIAY---VYHMYLGVLSGGQIINKKRQLSLMKSN--Y--QDQVLSFD 145 (207)
Q Consensus 76 ~~~~-~~~~~~pa~~~yv~~i~~~~~~--~P~~LlAh---~Yv~YlgdlsGGqii~~~~~~a~~l~~--~--g~~Fy~F~ 145 (207)
+ ...+++|+|.+|++++..++.+ ++..+++. |+..|. -=|+.+.+. ....++ . =...|. +
T Consensus 119 ---~~~~~~~~p~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~---eig~~l~~~---~~~~~~~~Y~~WI~~Y~-~ 188 (248)
T 3no6_A 119 ---IVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYA---VIGKRAMED---PKLNKESVTSKWFQFYS-T 188 (248)
T ss_dssp ---HCCSCCCCHHHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHH---HHHHHHHHC---TTCCTTSTTHHHHHHHH-H
T ss_pred ---HhhhcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HHHHHHHhc---CCCCCCchHHHHHHHHH-H
Confidence 1 1457899999999999999876 44444444 444553 223333322 100011 1 012233 2
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q psy4643 146 PSVNVGQLKRQIKSILDDESTQFSRQTREQLLAE 179 (207)
Q Consensus 146 ~~~~~~~~k~~yr~~ld~l~~~l~~~e~~~iv~E 179 (207)
+-...-+..++.+|+++...|+++++++.+-
T Consensus 189 ---ef~~~v~~~~~~ld~~~~~~s~~~~~~l~~~ 219 (248)
T 3no6_A 189 ---EMDELVDVFDQLMDRLTKHCSETEKKEIKEN 219 (248)
T ss_dssp ---HTHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhCCHHHHHHHHHH
Confidence 3345556778888988777888888765543
No 19
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=82.69 E-value=22 Score=30.52 Aligned_cols=178 Identities=12% Similarity=0.003 Sum_probs=94.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhc---Ccc-----ccCC------CCccccChHHHHHHHhHhhCCCCCCCCC
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKS---NQY-----LQQF------NISDMKRTEAFEADLEHYLGPDWKADYK 73 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~---~p~-----l~~l------~~~~L~R~~~L~~DL~~l~g~~w~~~~~ 73 (207)
|-.+++.++.++.+-|+.-..+=..+..... ++. ...+ -.++..-.+...+.++.+ |-+...
T Consensus 135 G~Ls~e~~r~yl~Qdy~yl~~f~~~lA~~~a~~~~~~~r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~l-Gld~~~--- 210 (332)
T 3bjd_A 135 GSASRAQLQVFLRHQWFRTFRLYRDAADLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAI-GLEADF--- 210 (332)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHTCCSHHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHT-TCCCCT---
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHc-CCChhH---
Confidence 4557888888888877754444333332211 110 0000 111222246666777776 654211
Q ss_pred CCCCccccCCCChhHHHHHHHHHHhh-ccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccceeecCCCChHH
Q psy4643 74 PRPDWKADYKPRESVVNYLNHLEDLK-QTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQ 152 (207)
Q Consensus 74 ~~~~~~~~~~~~pa~~~yv~~i~~~~-~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~F~~~~~~~~ 152 (207)
...++.|.+..|+.+....+ ..+|..++|+.++..+--..+-+-|.+.+.. .++++.+..||+---..|...
T Consensus 211 ------~~~~~~p~~~~~v~~~~~~~~~~~~~~alaal~~~E~~~p~~y~~i~~~l~~-~g~~~~~~~yf~~HI~lD~~H 283 (332)
T 3bjd_A 211 ------QAVSTMPEEIAYLNNRARAFRHAEVGWGLAVFYITELVVPGNHEKLYRALLQ-AGLSEDQAEYYKVHISLVPPR 283 (332)
T ss_dssp ------TCCCCCHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCTTTTHHHHHHHHHCC--
T ss_pred ------hcccCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCcccchHHHHHHHHhHHH
Confidence 14566799999999999886 4566678899898877544333333333211 223333445665421112211
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 153 LKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCVLELLE 199 (207)
Q Consensus 153 ~k~~yr~~ld~l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~~~~ 199 (207)
-...+..-++.+ + ++++++.++..+..++++....++.|-..+.
T Consensus 284 ~~~~~~~ll~~~--~-~~~~q~~~~~a~~~~l~~~~~f~D~l~~~l~ 327 (332)
T 3bjd_A 284 AKREWQLIARRI--P-DVQFQNAFLTSLSQHFRVERAYYDAIWEEMQ 327 (332)
T ss_dssp -CTTHHHHHTTT--T-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123355554 3 5666667888887776766666666554443
No 20
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=80.64 E-value=3.1 Score=33.49 Aligned_cols=154 Identities=8% Similarity=-0.003 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccC---C---CCccccChHHHHHHHhHhhCCCCCCCCCCCCCccc
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKS-NQYLQQ---F---NISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKA 80 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~-~p~l~~---l---~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~ 80 (207)
|-.+++.|+.+|.+=|+.-..+=.++..... .|.... + ...-+..-..+.+++..-+|-+..+ +.
T Consensus 43 GtL~~~~f~~YL~QDy~yl~~f~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~Gi~~~~--------~~ 114 (225)
T 1z72_A 43 GTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAEND--------YL 114 (225)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTHH--------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--------Hh
Confidence 4578899999999988888777777665432 110000 0 0000111112333332223544221 22
Q ss_pred cCCCChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcc---cceeecCCCChHHHHHH
Q psy4643 81 DYKPRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQD---QVLSFDPSVNVGQLKRQ 156 (207)
Q Consensus 81 ~~~~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~---~Fy~F~~~~~~~~~k~~ 156 (207)
..+|+|+|.+|++++..++.+ ++..+++-.+.-+.+=..=|+. +...+ .+. .+.+.+++.+-...-..
T Consensus 115 ~~~~~p~t~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~i~~~-------~~~~~-~~~~y~~Wi~~y~~~~f~~~v~~ 186 (225)
T 1z72_A 115 EVTLHPVTKAFQDLMYSAVASSDYAHLLVMLVIAEGLYLDWGSK-------DLALP-EVYIHSEWINLHRGPFFAEWVQF 186 (225)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTC-------SSCCC-SSHHHHHHHHTTCSHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHh-------hccCC-CcchHHHHHHHhCCHHHHHHHHH
Confidence 467899999999999998764 5666666655554433221221 11111 222 44444533233455667
Q ss_pred HHHHHHhcccCCCHHHHHHHHHH
Q psy4643 157 IKSILDDESTQFSRQTREQLLAE 179 (207)
Q Consensus 157 yr~~ld~l~~~l~~~e~~~iv~E 179 (207)
.++.+|+++.. +++++ ++.+-
T Consensus 187 ~~~lld~~~~~-~~~~~-~~~~~ 207 (225)
T 1z72_A 187 LVDELNRVGKN-REDLT-ELQQR 207 (225)
T ss_dssp HHHHHHHHHC--CCCHH-HHHHH
T ss_pred HHHHHHHHHcC-CHHHH-HHHHH
Confidence 78888888655 66665 54443
No 21
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=76.14 E-value=13 Score=29.66 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCC--CC---cc-ccChHHHHHHHhHhhCCCCCCCCCCCCCccc
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSN-QYLQQF--NI---SD-MKRTEAFEADLEHYLGPDWKADYKPRPDWKA 80 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~-p~l~~l--~~---~~-L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~ 80 (207)
|-.+++.|+.+|.+=|..-..+=.++...... |..... .. .. +..--.+-+++..-+|-+..+ +.
T Consensus 38 GtL~~~~f~~YL~QDy~yl~~f~r~~a~~~~ka~~~~~~~~l~~~~~~~i~~E~~lh~~~~~~~Gi~~~~--------~~ 109 (221)
T 2gm8_A 38 GTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRD--------AA 109 (221)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCCHHH--------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--------Hh
Confidence 45788999999999998888877777665421 100000 00 00 111112223322223543221 12
Q ss_pred cCCCChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhh
Q psy4643 81 DYKPRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGV 117 (207)
Q Consensus 81 ~~~~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~Ylgd 117 (207)
..+|+|+|.+|++++..++.+ ++..+++-.+.-+.+=
T Consensus 110 ~~~~~p~t~aY~~~l~~~a~~~~~~~~laAl~pc~~~Y 147 (221)
T 2gm8_A 110 EAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSY 147 (221)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHH
Confidence 367899999999999998764 5666666666554443
No 22
>1wwm_A Hypothetical protein TT2028; TENA/THI-4 family, putative transctiption activator, structu genomics; 2.61A {Thermus thermophilus} SCOP: a.132.1.3
Probab=71.55 E-value=13 Score=29.03 Aligned_cols=139 Identities=9% Similarity=-0.033 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccCCCCccccChHHHHHH----HhHhhCCCCCCCCCCCCCccccCCC
Q psy4643 10 SDTSIWIEGLLVFYEVFKFLESAMEEHKS-NQYLQQFNISDMKRTEAFEAD----LEHYLGPDWKADYKPRPDWKADYKP 84 (207)
Q Consensus 10 ~d~~~Y~~~L~~~y~vY~aLE~al~~~~~-~p~l~~l~~~~L~R~~~L~~D----L~~l~g~~w~~~~~~~~~~~~~~~~ 84 (207)
.+++.++.+|.+=|..-..+=.++..... .| .+++.+....... ..++- .|.-+ + ..++
T Consensus 26 L~~~~f~~Yl~QD~~yL~~f~r~~a~~~~ka~------~~~~~~~~~~~~~~~~E~~~~~--~~gi~----~----~~~~ 89 (190)
T 1wwm_A 26 LDEERFRFWLQQDYPFVEALYRYQVGLLLEAP------QAHRAPLVQALMATVEELDWLL--LQGAS----P----SAPV 89 (190)
T ss_dssp CCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHH--TTTCC----S----SSCC
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHHHHHH--HcCCC----C----CCCC
Confidence 56778888888777766666555554432 11 0111111111111 23331 12210 0 3578
Q ss_pred ChhHHHHHHHHHHhhccCcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCc-ccceeecCCCChHHHHHHHHHHHHh
Q psy4643 85 RESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQ-DQVLSFDPSVNVGQLKRQIKSILDD 163 (207)
Q Consensus 85 ~pa~~~yv~~i~~~~~~~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g-~~Fy~F~~~~~~~~~k~~yr~~ld~ 163 (207)
+|+|.+|++++..++..+...+++..+.-+.+=.-=|+.+.+ ++.. ..+-+.+++++=...=+..++.+|+
T Consensus 90 ~p~~~aY~~~l~~~a~~~~~~~~aAl~pc~~~Y~~ig~~l~~--------~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~ 161 (190)
T 1wwm_A 90 HPVRAGYIALLEEMGRLPYAYRVVFFYFLNGLFLEAWAHHVP--------EEGPWAELSQHWFAPEFQAVLYDLEVLARG 161 (190)
T ss_dssp CHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSC--------SSSHHHHHHHHHSCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcc--------CCcHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 899999999999998744444545444443332222332221 1110 1222233233445555677788888
Q ss_pred cccCCCHHH
Q psy4643 164 ESTQFSRQT 172 (207)
Q Consensus 164 l~~~l~~~e 172 (207)
++...++++
T Consensus 162 ~~~~~~~~~ 170 (190)
T 1wwm_A 162 LWEDLDPEV 170 (190)
T ss_dssp HHTTSCHHH
T ss_pred HHHhCCHHH
Confidence 876667665
No 23
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=71.40 E-value=25 Score=28.16 Aligned_cols=154 Identities=10% Similarity=0.039 Sum_probs=79.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCC--CC---ccc-cChHHHHHHHhHhhCCCCCCCCCCCCCccc
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSN-QYLQQF--NI---SDM-KRTEAFEADLEHYLGPDWKADYKPRPDWKA 80 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~-p~l~~l--~~---~~L-~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~ 80 (207)
|-.+++.|+.+|.+=|+.-..+=.++...... |..... .. ..+ ..--.+-.++..-+|-+..+ +.
T Consensus 36 GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~aka~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~Gi~~~~--------~~ 107 (226)
T 3mvu_A 36 GTLPREAFLHYLQQDYVFLIHFSRAWALAVVKSETHSEMLAAVGTVNALVAEEMQLHIGICEASGISQEA--------LF 107 (226)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTCCHHH--------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--------Hh
Confidence 45789999999999998888877777665321 100000 00 000 00112222322223543221 12
Q ss_pred cCCCChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCccccee---ecCCCChHHHHHH
Q psy4643 81 DYKPRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLS---FDPSVNVGQLKRQ 156 (207)
Q Consensus 81 ~~~~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~---F~~~~~~~~~k~~ 156 (207)
..+++|+|.+|++++..++.+ ++..+++..+.-+.+=.-=|+.+.+. . + +..|.. .+++++-...-+.
T Consensus 108 ~~~~~p~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~---~---~--~~~y~~WI~~y~~~~f~~~v~~ 179 (226)
T 3mvu_A 108 ATRERAENLAYTRFVLEAGYSGDLLDLLAALAPCVMGYGEIGKRLTAE---A---T--STLYGDWIDTYGGDDYQAACKA 179 (226)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH---C---S--CSTTHHHHHHHHSHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc---C---C--CCcchHHHHHcCCHHHHHHHHH
Confidence 457899999999999998764 45555555554433322223333322 1 1 112222 2211122344456
Q ss_pred HHHHHH-----hccc-CCCHHHHHHHH
Q psy4643 157 IKSILD-----DEST-QFSRQTREQLL 177 (207)
Q Consensus 157 yr~~ld-----~l~~-~l~~~e~~~iv 177 (207)
.++.+| +++. ..|+++++++.
T Consensus 180 ~~~~ld~~~~~~~~~~~~~~~~~~~~~ 206 (226)
T 3mvu_A 180 VGTLLDDALERRLGAEFTSSPRWSRLC 206 (226)
T ss_dssp HHHHHHHHHHHHHCTTGGGSHHHHHHH
T ss_pred HHHHHCchhHHHHhhhccChHHHHHHH
Confidence 677788 7654 55666666443
No 24
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=69.67 E-value=5.6 Score=33.50 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=65.0
Q ss_pred cCCCChhHHHHHHHHHHhhccC-cchHHHHH-HHHHHhhhchhHHHHHHHH---HhhccC----cCcccceeecCCCChH
Q psy4643 81 DYKPRESVVNYLNHLEDLKQTN-DTLLIAYV-YHMYLGVLSGGQIINKKRQ---LSLMKS----NYQDQVLSFDPSVNVG 151 (207)
Q Consensus 81 ~~~~~pa~~~yv~~i~~~~~~~-P~~LlAh~-Yv~YlgdlsGGqii~~~~~---~a~~l~----~~g~~Fy~F~~~~~~~ 151 (207)
..+++|++.+|++++-..+... ...++|-. |..|.-. |+|=+.+.+ ....++ +....|+.++. .-.
T Consensus 125 ~~~~~P~~~aYt~~ml~~a~~g~l~e~lAAl~ya~e~~i---g~~s~~~~~g~~~~~~~~~~~~~~~~~w~~~h~--~~D 199 (262)
T 3oql_A 125 DQRVAPELHALSHWCWQTSSSDSLAVAMAATNYAIEGAT---GEWSAVVCSTGVYAEAFAEETRKKSMKWLKMHA--QYD 199 (262)
T ss_dssp HTCSCGGGGHHHHHHHHHHHHSCHHHHHHHTTTHHHHHH---HHHHHHHHSSSHHHHTSCHHHHHHHHHHHHHHH--TCC
T ss_pred cCCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHh---hhHHHHhhhhHHHhcCCCcccChHHHHHHHHHH--HHH
Confidence 4578999999999999987544 33355544 6665433 222111110 000011 12456666662 222
Q ss_pred HH-HHHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 152 QL-KRQIKSILDDESTQF-SRQTREQLLAESRKVFLLNNSIIKCV 194 (207)
Q Consensus 152 ~~-k~~yr~~ld~l~~~l-~~~e~~~iv~EA~~aF~ln~~i~~eL 194 (207)
+. -...++.+|.+++.- |+++++++.+.+..+.++-...++..
T Consensus 200 ~~H~~e~~~li~~l~~~~~~~~e~~~~~~a~~~S~~~~~~fld~~ 244 (262)
T 3oql_A 200 DAHPWEALEIICTLVGNKPSLQLQAELRQAVTKSYDYMYLFLERC 244 (262)
T ss_dssp -CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 445667888886555 89999999999888888766666554
No 25
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=65.48 E-value=27 Score=27.57 Aligned_cols=102 Identities=11% Similarity=-0.060 Sum_probs=60.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC--cc----ccCCCCccccChHHHHHHHhHhhCCCCCCCCCCCCCcccc
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSN--QY----LQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKAD 81 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~~--p~----l~~l~~~~L~R~~~L~~DL~~l~g~~w~~~~~~~~~~~~~ 81 (207)
|-.+++.|+.+|.+=|+.-..+=.++...... +. +......-+..--.+-+++..-+|-+..+ +..
T Consensus 34 GtL~~~~f~~Yl~QDy~yl~~f~r~~a~~~~ka~~~~~~~~~~~~~~~i~~E~~~h~~~~~~~Gi~~~~--------~~~ 105 (214)
T 2qzc_A 34 GSLPLDIFRYYLIQDGKYVEDMLRALLIASSKGPIDKVTKILNLVFSSRDKGLETHGKLYSKLDISRDV--------IVK 105 (214)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTCC--CHHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--------Hhh
Confidence 45788999999999988888777777665321 10 00000000122223444443333544221 123
Q ss_pred CCCChhHHHHHHHHHHhhccCcchHHHHHHHHHHhh
Q psy4643 82 YKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGV 117 (207)
Q Consensus 82 ~~~~pa~~~yv~~i~~~~~~~P~~LlAh~Yv~Ylgd 117 (207)
.+|+|+|.+|++++..++.+++..++|-.+.-+.+=
T Consensus 106 ~~~~p~t~aY~~~l~~~a~~~~~~~~aAl~pc~~~Y 141 (214)
T 2qzc_A 106 TGYNLINYAYTRHLYYYANLDWNKFLVAWTPCMFGY 141 (214)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 678999999999999987666666666666554443
No 26
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=61.77 E-value=64 Score=26.82 Aligned_cols=105 Identities=9% Similarity=-0.064 Sum_probs=54.0
Q ss_pred cCC-CChhHHHHHHHHHHhhcc-CcchHHHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccceeecCCCChHHHHHHHH
Q psy4643 81 DYK-PRESVVNYLNHLEDLKQT-NDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIK 158 (207)
Q Consensus 81 ~~~-~~pa~~~yv~~i~~~~~~-~P~~LlAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~Fy~F~~~~~~~~~k~~yr 158 (207)
..+ ++|.|+.||.+.-+.+.+ ++...+|-.+ | -+.+.+|.+.++.-. ..+|.|-...+..-|+..-.
T Consensus 113 ~~~~~~P~t~~~vdaY~~~a~~~s~~e~vAA~L--~--E~~~p~i~~~r~~~~-------~~~y~~i~~~~l~yF~~h~~ 181 (258)
T 3hlx_A 113 SERHVLPGVRFAVDAYLNFARRACWQEAACSSL--T--ELFAPQIHQSRLDSW-------PQHYPWIKEEGYFFFRSRLS 181 (258)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHHSCHHHHHHGGG--G--GGTHHHHHHHHHHHH-------HHHCTTSCGGGGHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhcCCHHHHHHHHH--H--HHHHHHHHHHHhhcH-------HHhCCCCChhHHHHHHHHhh
Confidence 345 589997555555544433 3334444433 3 555788877764322 13344431112333443332
Q ss_pred HH-------HHh-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 159 SI-------LDD-ESTQFSRQTREQLLAESRKVFLLNNSIIKCVLE 196 (207)
Q Consensus 159 ~~-------ld~-l~~~l~~~e~~~iv~EA~~aF~ln~~i~~eL~~ 196 (207)
++ ++- +...-|+++++++++.....=+.--..++.+..
T Consensus 182 ~a~~D~~hal~~vl~~~~t~e~q~~a~~a~~~~~~~lw~~lDa~~~ 227 (258)
T 3hlx_A 182 QANRDVEHGLALAKAYCDSAEKQNRMLEILQFKLDILWSMLDAMTM 227 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 211 112358999998888766655555555555543
No 27
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=60.68 E-value=16 Score=33.55 Aligned_cols=154 Identities=10% Similarity=0.050 Sum_probs=77.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccCCCCccccCh----HHHHHHHhHhh---CCCCCCCCCCCCCcc
Q psy4643 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKS-NQYLQQFNISDMKRT----EAFEADLEHYL---GPDWKADYKPRPDWK 79 (207)
Q Consensus 8 ~~~d~~~Y~~~L~~~y~vY~aLE~al~~~~~-~p~l~~l~~~~L~R~----~~L~~DL~~l~---g~~w~~~~~~~~~~~ 79 (207)
|-.+++.++.+|.+=|..-..+=.++..... .|.. +++.+. ..+...+..+. ...|.-+ .+..+
T Consensus 361 GtL~~~~F~~YL~QD~~yL~~far~~a~a~aka~~~-----~~~~~~~~~~~~i~~E~~~h~~~~~~~~gi~---~~~~~ 432 (550)
T 3rm5_A 361 GTLERKKFQFFIEQDYAYLVDYARVHCIAGSKAPCL-----EDMEKELVIVGGVRTEMGQHEKRLKEVFGVK---DPDYF 432 (550)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC---CTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CHHHH
Confidence 3467888888888888877776666655432 1100 001110 11222222211 1122210 01112
Q ss_pred ccCCCChhHHHHHHHHHHhhccCcc-hH---HHHHHHHHHhhhchhHHHHHHHHHhhccCcCcccc---eeecCCCChHH
Q psy4643 80 ADYKPRESVVNYLNHLEDLKQTNDT-LL---IAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQV---LSFDPSVNVGQ 152 (207)
Q Consensus 80 ~~~~~~pa~~~yv~~i~~~~~~~P~-~L---lAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~g~~F---y~F~~~~~~~~ 152 (207)
+..+++|++.+|++++...+.+.+. .+ +.-|+..|. . =|+.+... .-...+..| -+++.+++=..
T Consensus 433 ~~~~~~p~~~aYt~~l~~~a~~g~~~~~~aAl~pC~~~Y~-~--ig~~l~~~-----~~~~~~~~Y~~WI~~Y~~~~f~~ 504 (550)
T 3rm5_A 433 QKIKRGPALRAYSRYFNDVSRRGNWQELVASLTPCLMGYG-E--ALTKMKGK-----VTAPEGSVYHEWCETYASSWYRE 504 (550)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-H--HHHTTTTC-----CCSCTTSHHHHHHHHTTSHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH-H--HHHHHHhc-----cCCCCCchHHHHHHHhCCHHHHH
Confidence 3568899999999999999875433 23 344555554 2 23322211 000112122 22242222334
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHH
Q psy4643 153 LKRQIKSILDDESTQFSRQTREQLL 177 (207)
Q Consensus 153 ~k~~yr~~ld~l~~~l~~~e~~~iv 177 (207)
.-++.++.+|+++...++++++++.
T Consensus 505 ~v~~~~~~ld~~~~~~~~~~~~~l~ 529 (550)
T 3rm5_A 505 AMDEGEKLLNHILETYPPEQLDTLV 529 (550)
T ss_dssp HHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4556788889887778888777544
No 28
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=43.54 E-value=26 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy4643 154 KRQIKSILDDESTQFSRQTREQLLAESRKVF 184 (207)
Q Consensus 154 k~~yr~~ld~l~~~l~~~e~~~iv~EA~~aF 184 (207)
|++-..-|..+ ||.|||+.|+.||++..
T Consensus 52 W~D~qqLL~tL---lT~EEr~ril~eArk~v 79 (131)
T 1u7k_A 52 WDDCQQLLGTL---LTGEEKQRVLLEARKAV 79 (131)
T ss_dssp HHHHHHHHHHH---SCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH---cCHHHHHHHHHHHHHHH
Confidence 45556667665 99999999999999764
No 29
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=35.20 E-value=46 Score=19.26 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcccCCCHHHHHHHHHH
Q psy4643 154 KRQIKSILDDESTQFSRQTREQLLAE 179 (207)
Q Consensus 154 k~~yr~~ld~l~~~l~~~e~~~iv~E 179 (207)
.++|.+.|..- +||+++|+..|+-
T Consensus 6 QnaFYevLh~~--nLtEeQrn~yI~s 29 (34)
T 1l6x_B 6 QRRFYEALHDP--NLNEEQRNAKIKS 29 (34)
T ss_dssp HHHHHHHHHCT--TCCHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHhHHHH
Confidence 45788888765 8999999988764
No 30
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=33.04 E-value=51 Score=19.78 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 169 SRQTREQLLAESRKVFLLNNSIIKCVL 195 (207)
Q Consensus 169 ~~~e~~~iv~EA~~aF~ln~~i~~eL~ 195 (207)
.++.|+.||.|++.+=+-.+.++.|-.
T Consensus 10 r~~rkerIv~eCnavrqALQdLlseY~ 36 (40)
T 4e17_B 10 RDDRRERIVAECNAVRQALQDLLSEYM 36 (40)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788999999888777777776643
No 31
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=32.46 E-value=43 Score=22.69 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.0
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy4643 166 TQFSRQTREQLLAESRKVFL 185 (207)
Q Consensus 166 ~~l~~~e~~~iv~EA~~aF~ 185 (207)
.+.|.|+|.++++|+-.+|.
T Consensus 11 ~pRT~EQKralaeE~T~if~ 30 (72)
T 3mb2_B 11 RPPDRTRKQAFAAEASAIFQ 30 (72)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999885
No 32
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=31.43 E-value=38 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q psy4643 149 NVGQLKRQIKSILDDESTQFSRQTREQLLAE 179 (207)
Q Consensus 149 ~~~~~k~~yr~~ld~l~~~l~~~e~~~iv~E 179 (207)
..++|+.+=...+++. +||++|++.|.+-
T Consensus 49 ~RerF~aDpeA~l~~~--gLTeEEr~AV~~r 77 (139)
T 1b4u_A 49 NRERFKADESAYLDEW--NLTPAAKAAVLAR 77 (139)
T ss_dssp HHHHHHHCHHHHHHTT--TCCHHHHHHHHHT
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHcC
Confidence 3566677777888888 8999999988753
No 33
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=28.26 E-value=52 Score=27.92 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHhhccCcC---cccceeecCCCChHHHHHHHHHHHHhcc------------cCCCHH
Q psy4643 107 IAYVYHMYLGVLSGGQIINKKRQLSLMKSNY---QDQVLSFDPSVNVGQLKRQIKSILDDES------------TQFSRQ 171 (207)
Q Consensus 107 lAh~Yv~YlgdlsGGqii~~~~~~a~~l~~~---g~~Fy~F~~~~~~~~~k~~yr~~ld~l~------------~~l~~~ 171 (207)
+||+++..||+| -.|+=... ..+.|. -..-|+=++..|.+.+++-.+..++.-. ..||.+
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~----~~~~Gv~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~ 75 (315)
T 3si9_A 1 MAHHHHHHMGTL-EAQTQGPG----SMLKGAVTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHE 75 (315)
T ss_dssp -------------------------CCCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHH
T ss_pred CCccccccccch-hhhccCCC----ccCCceeEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHH
Confidence 478899999998 66665543 223331 1222332445688888877666664311 248999
Q ss_pred HHHHHHHHHHHH
Q psy4643 172 TREQLLAESRKV 183 (207)
Q Consensus 172 e~~~iv~EA~~a 183 (207)
||.++++.+..+
T Consensus 76 Er~~v~~~~v~~ 87 (315)
T 3si9_A 76 EHKRIIELCVEQ 87 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 34
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=21.97 E-value=52 Score=18.57 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4643 169 SRQTREQLLAESRKVFLLNNSIIKC 193 (207)
Q Consensus 169 ~~~e~~~iv~EA~~aF~ln~~i~~e 193 (207)
+++.++.+++.|+.+++....+++.
T Consensus 1 D~~~q~rLl~aak~vaeata~mVea 25 (31)
T 1u6h_B 1 DLENSRKLLSAAKILADATAKMVEA 25 (31)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778899999999988888764
Done!