RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4643
(207 letters)
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 100 bits (250), Expect = 1e-26
Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 1 MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADL 60
M F G + + + + L Y ++ LE+A+ +H+ N+ + ++ RT+ DL
Sbjct: 24 MKCFLKGIV-EREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDL 82
Query: 61 EHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSG 120
+Y GP+W+ +P P Y++ L+ + + LLIA+ Y YLG LSG
Sbjct: 83 TYYYGPNWQQIIQPTP----------CAKIYVDRLKTIAASEPELLIAHCYTRYLGDLSG 132
Query: 121 GQIINKKRQLSLMKSNYQDQVLSF------DPSVNVGQLKRQIKSILDDESTQFSRQTRE 174
GQ + + +L + + + Q K + +L+ T
Sbjct: 133 GQSLKNIIRSALQLPE--GEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSLPL--DEATIN 188
Query: 175 QLLAESRKVFLLNNSIIKCVLELLEVLL 202
+++ E+ F LN ++ + +L++ +
Sbjct: 189 RIVEEANYAFSLNREVMHDLEDLIKAAI 216
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp.
[TaxId: 1143]}
Length = 222
Score = 92.4 bits (229), Expect = 6e-24
Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 13/192 (6%)
Query: 1 MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADL 60
+ F G + + + + + + Y V+ +E M + K + L ++ R ++ E DL
Sbjct: 25 VKCFLKGVV-EKNSYRKLVGNLYFVYSAMEEEMAKFKDHPILSHIYFPELNRKQSLEQDL 83
Query: 61 EHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSG 120
+ Y G +W+ + K + Y++ + + T LL+A+ Y YLG LSG
Sbjct: 84 QFYYGSNWRQEVKISA----------AGQAYVDRVRQVAATAPELLVAHSYTRYLGDLSG 133
Query: 121 GQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAES 180
GQI+ K Q ++ + F + K + ++D + T E+++ E+
Sbjct: 134 GQILKKIAQNAMNLHDGGTAFYEFADIDDEKAFKNTYRQAMNDLP--IDQATAERIVDEA 191
Query: 181 RKVFLLNNSIIK 192
F +N +
Sbjct: 192 NDAFAMNMKMFN 203
>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 214
Score = 89.0 bits (220), Expect = 1e-22
Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 16/201 (7%)
Query: 1 MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNI-SDMKRTEAFEAD 59
M +F G + + + Y ++ LE +E +K + ++ R A E D
Sbjct: 25 MRNFQKGQV-TRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQD 83
Query: 60 LEHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLS 119
L + GP W+ P ++ Y+ L ++ +T LL+A+ Y YLG LS
Sbjct: 84 LAFWYGPRWQEVIPYTP----------AMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLS 133
Query: 120 GGQIINK--KRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLL 177
GGQ++ K ++ L L S +F + + K+ +S ++ S + + R++++
Sbjct: 134 GGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMN--SLEMTPAVRQRVI 191
Query: 178 AESRKVFLLNNSIIKCVLELL 198
E++ FLLN + + + ELL
Sbjct: 192 EEAKTAFLLNIQLFEELQELL 212
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 207
Score = 85.9 bits (212), Expect = 2e-21
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 1 MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADL 60
M D G + + + + + LE A++ +++ + + + R E DL
Sbjct: 23 MSDLLKGRL-GVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDL 81
Query: 61 EHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDT-LLIAYVYHMYLGVLS 119
+ G W++ +V++Y+N LE+++ D L+A+ Y YLG LS
Sbjct: 82 DKLNGSSE---------WRSRITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLS 132
Query: 120 GGQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAE 179
GGQ+I + Q F+ + K + + L++ S + RE LL E
Sbjct: 133 GGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLE--LSDEQREHLLKE 190
Query: 180 SRKVFLLNNSIIK 192
+ F+ N+ +
Sbjct: 191 ATDAFVFNHQVFA 203
>d1j77a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisseria
meningitidis [TaxId: 487]}
Length = 200
Score = 60.1 bits (145), Expect = 5e-12
Identities = 26/197 (13%), Positives = 61/197 (30%), Gaps = 31/197 (15%)
Query: 1 MVDFGSGAMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADL 60
+V + +I+ L + K ++ ++ + N+ + + M R +A DL
Sbjct: 22 LVMSVQPFV-SKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELE--YMARYDAVTQDL 78
Query: 61 EHYLGPDWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSG 120
+ LG + + + N + Y G G
Sbjct: 79 KD-LGEEPY---------------------KFDKELPYEAGNKAIGWLYCAE---GSNLG 113
Query: 121 GQIINKKRQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAES 180
+ K Q + + L+ P G+ R L+ + + + + + +
Sbjct: 114 AAFLFKHAQKLDYNGEHGARHLAPHP-DGRGKHWRAFVEHLN--ALNLTPEAEAEAIQGA 170
Query: 181 RKVFLLNNSIIKCVLEL 197
R+ F +++ L
Sbjct: 171 REAFAFYKVVLRETFGL 187
>d1sk7a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 187
Score = 58.9 bits (142), Expect = 1e-11
Identities = 22/185 (11%), Positives = 49/185 (26%), Gaps = 28/185 (15%)
Query: 8 AMSDTSIWIEGLLVFYEVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPD 67
+ + + Y LE + + R +A ADL P
Sbjct: 27 PFASRDNFARFVAAQYLFQHDLEPLYRNEALARLFPGL--ASRARDDAARADLADLGHPV 84
Query: 68 WKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKK 127
+ D R + + +++ + G G + KK
Sbjct: 85 PEGDQSVREA----------------------DLSLAEALGWLF-VSEGSKLGAAFLFKK 121
Query: 128 RQLSLMKSNYQDQVLSFDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLN 187
+ N+ + L+ Q + +ILD + + + + F
Sbjct: 122 AAALELDENFGARHLAEPE-GGRAQGWKSFVAILD--GIELNEEEERLAAKGASDAFNRF 178
Query: 188 NSIIK 192
+++
Sbjct: 179 GDLLE 183
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 26.6 bits (59), Expect = 0.70
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 34 EEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYKPR 85
+ K + + +I D + + D E G W+ P++K ++KPR
Sbjct: 25 TDSKPEDWDKPEHIPDPDAKKPEDWD-EEMDGE-WEPPVIQNPEYKGEWKPR 74
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 28.4 bits (62), Expect = 0.73
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 67 DWKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIA 108
W P K +PR SV LN ++ ++ A
Sbjct: 60 RWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHA 101
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 26.0 bits (57), Expect = 3.5
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 152 QLKRQIKSILDDESTQFSRQTREQLLAESRKVFLLNNSIIKCV 194
+ Q+ + + +E F+ L E R F I+ CV
Sbjct: 255 NVISQLDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCV 297
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 26.0 bits (56), Expect = 3.7
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 68 WKADYKPRPDWKADYKPRESVVNYLNHLEDLKQTNDTLLIA 108
+ P +W+A Y+ ++ L+ L + D + +A
Sbjct: 68 NRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLA 108
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
halodurans [TaxId: 86665]}
Length = 415
Score = 25.7 bits (56), Expect = 4.1
Identities = 21/159 (13%), Positives = 40/159 (25%), Gaps = 22/159 (13%)
Query: 24 EVFKFLESAMEEHKSNQYLQQFNISDMKRTEAFEADLEHYLGPDWKADYKPRPDWKADYK 83
++ E + + LQ N+SD+ T D E W + +
Sbjct: 113 VYREYFAKKTSEEQVDTVLQLANVSDVVMTNDPFDDNERI---SWLEG----KQPDSRFH 165
Query: 84 PRESVVNYLNHLEDLKQTNDTLLIAYVYHMYLGVLSGGQIINKKRQLSLMKSNYQDQVLS 143
+ LN E + + N+ + +
Sbjct: 166 AALRLDPLLNEYEQ-----------TKHRLRDWGYKVNDEWNEGSIQEVKRFLTD----W 210
Query: 144 FDPSVNVGQLKRQIKSILDDESTQFSRQTREQLLAESRK 182
+ V + E + R R+ LL + K
Sbjct: 211 IERMDPVYMAVSLPPTFSFPEESNRGRIIRDCLLPVAEK 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 742,358
Number of extensions: 32374
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 15
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)