BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4644
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVXX-XXXXXXXXXIVPLPNVNSAILRKVIQ 59
MP+IKLQSSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQ
Sbjct: 4 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 63
Query: 60 WATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTC 119
W T+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 64 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 123
Query: 120 KTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
KTVANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 124 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 163
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/166 (69%), Positives = 125/166 (75%), Gaps = 2/166 (1%)
Query: 187 PNVNSAILRKSSDGEIFNVDFEIAKSSVTIKTMVXX-XXXXXXXXXIVPLPNVNSAILRK 245
P++ S L+ SSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+K
Sbjct: 2 PHMPSIKLQ-SSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK 60
Query: 246 VIQWATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLD 305
VIQW T+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLD
Sbjct: 61 VIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLD 120
Query: 306 VTCKTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEEK 351
VTCKTVANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WCEEK
Sbjct: 121 VTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 166
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 102 TLFELILAANYLDIKGLLD 120
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 220 bits (560), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 3 NIKLQSSDGEIFNVDFEIAKSSVTIKTMVXX-XXXXXXXXXIVPLPNVNSAILRKVIQWA 61
+IKLQSSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 61
Query: 62 TYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
T+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKT
Sbjct: 62 THHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
Query: 122 VANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
VANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 122 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 110/159 (69%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Query: 191 SAILRKSSDGEIFNVDFEIAKSSVTIKTMVXX-XXXXXXXXXIVPLPNVNSAILRKVIQW 249
++I +SSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 1 ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 60
Query: 250 ATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 309
T+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 61 CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
Query: 310 TVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 348
TVANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 121 TVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 98 TLFELILAANYLDIKGLLD 116
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 122/159 (76%), Gaps = 13/159 (8%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQW 60
MP+IKLQSSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQW 55
Query: 61 ATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
T+H TDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 56 CTHHKDDPGGSG--------TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 107
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
TVANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 108 TVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 146
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 121/160 (75%), Gaps = 13/160 (8%)
Query: 192 AILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWAT 251
+I +SSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW T
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQWCT 57
Query: 252 YHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 311
+H TDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKTV
Sbjct: 58 HHKDDPGGSG--------TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 109
Query: 312 ANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEEK 351
ANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WCEEK
Sbjct: 110 ANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 149
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 85 TLFELILAANYLDIKGLLD 103
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 121/159 (76%), Gaps = 17/159 (10%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQW 60
MP+IKLQSSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQW 55
Query: 61 ATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
T+H DDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 56 CTHHKDDP------------PDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 103
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
TVANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 104 TVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 142
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/161 (68%), Positives = 120/161 (74%), Gaps = 17/161 (10%)
Query: 191 SAILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWA 250
+I +SSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 2 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQWC 56
Query: 251 TYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 310
T+H DDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKT
Sbjct: 57 THHKDDP------------PDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 104
Query: 311 VANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEEK 351
VANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WCEEK
Sbjct: 105 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 145
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 81 TLFELILAANYLDIKGLLD 99
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 121/159 (76%), Gaps = 13/159 (8%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQW 60
M +IKLQSSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 1 MASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQW 55
Query: 61 ATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
T+H TDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 56 CTHHKDDPGGSG--------TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 107
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
TVANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 108 TVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 146
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/161 (69%), Positives = 122/161 (75%), Gaps = 13/161 (8%)
Query: 191 SAILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWA 250
++I +SSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 2 ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQWC 56
Query: 251 TYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 310
T+H TDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKT
Sbjct: 57 THHKDDPGGSG--------TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 108
Query: 311 VANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEEK 351
VANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WCEEK
Sbjct: 109 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 149
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 85 TLFELILAANYLDIKGLLD 103
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 204 bits (518), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 105/146 (71%), Positives = 112/146 (76%), Gaps = 5/146 (3%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQW 60
MP+IKLQSSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQW 55
Query: 61 ATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
T+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 56 CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 115
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTQ 146
TVANMIKGKTPEEIRKTFNIKNDFT+
Sbjct: 116 TVANMIKGKTPEEIRKTFNIKNDFTE 141
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/144 (69%), Positives = 108/144 (75%), Gaps = 5/144 (3%)
Query: 192 AILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWAT 251
+I +SSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW T
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQWCT 57
Query: 252 YHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 311
+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKTV
Sbjct: 58 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 117
Query: 312 ANMIKGKTPEEIRKTFNIKNDFTQ 335
ANMIKGKTPEEIRKTFNIKNDFT+
Sbjct: 118 ANMIKGKTPEEIRKTFNIKNDFTE 141
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 93 TLFELILAANYLDIKGLLD 111
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/138 (71%), Positives = 104/138 (75%), Gaps = 5/138 (3%)
Query: 2 PNIKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWA 61
P+IKLQSSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW
Sbjct: 1 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQWC 55
Query: 62 TYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
T+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKT
Sbjct: 56 THHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 115
Query: 122 VANMIKGKTPEEIRKTFN 139
VANMIKGKTPEEIRKTFN
Sbjct: 116 VANMIKGKTPEEIRKTFN 133
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/137 (68%), Positives = 101/137 (73%), Gaps = 5/137 (3%)
Query: 192 AILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWAT 251
+I +SSDGEIF VD EIAK SVTIKTM+ VPLPNVN+AIL+KVIQW T
Sbjct: 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLPNVNAAILKKVIQWCT 56
Query: 252 YHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 311
+H RTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKTV
Sbjct: 57 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 116
Query: 312 ANMIKGKTPEEIRKTFN 328
ANMIKGKTPEEIRKTFN
Sbjct: 117 ANMIKGKTPEEIRKTFN 133
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 92 TLFELILAANYLDIKGLLD 110
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 106/159 (66%), Gaps = 5/159 (3%)
Query: 193 ILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWATY 252
I+ KSSDGE F V+ +A S TI MV VPLPNV S IL KVI++
Sbjct: 6 IVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYCKR 61
Query: 253 HXXXXXXXXXXXXXXXRTDD-ISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 311
H +DD + +WDADF+K+DQ TLFELILAANYL+IK LLD+TC+TV
Sbjct: 62 HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121
Query: 312 ANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEE 350
A+MIKGKTPEEIR TFNIKNDFT EEE+VR+EN+W E
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 105/156 (67%), Gaps = 5/156 (3%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXXIVPLPNVNSAILRKVIQWATY 63
I L+SSDGE F V+ +A S TI MV VPLPNV S IL KVI++
Sbjct: 6 IVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYCKR 61
Query: 64 HXXXXXXXXXXXXXXXRTDD-ISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
H +DD + +WDADF+K+DQ TLFELILAANYL+IK LLD+TC+TV
Sbjct: 62 HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEW 158
A+MIKGKTPEEIR TFNIKNDFT EEE+VR+EN+W
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQW 157
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYL+IK L D
Sbjct: 97 TLFELILAANYLNIKNLLD 115
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 4/166 (2%)
Query: 189 VNSAILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXX---IVPLPNVNSAILRK 245
V S ++ S +GE F VD +IA+ S+ +K + ++P+PNV S++L+K
Sbjct: 5 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQK 64
Query: 246 VIQWATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLD 305
VI+WA +H ++ + SWD +FLKVDQ L+E+ILAANYL+IK LLD
Sbjct: 65 VIEWAEHHRDSNFPDEDDDDSR-KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLD 123
Query: 306 VTCKTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEEK 351
CK VA MI+G++PEEIR+TFNI NDFT EE +R+ENEW E++
Sbjct: 124 AGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAEDR 169
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 102/160 (63%), Gaps = 4/160 (2%)
Query: 3 NIKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXX---IVPLPNVNSAILRKVIQ 59
N+ L S +GE F VD +IA+ S+ +K + ++P+PNV S++L+KVI+
Sbjct: 8 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 67
Query: 60 WATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTC 119
WA +H ++ + SWD +FLKVDQ L+E+ILAANYL+IK LLD C
Sbjct: 68 WAEHHRDSNFPDEDDDDSR-KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGC 126
Query: 120 KTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
K VA MI+G++PEEIR+TFNI NDFT EE +R+ENEW
Sbjct: 127 KVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 9/48 (18%)
Query: 161 LFELILAANYLDIKGLEDEDEEIVPLPNVNSAILRKSSDGEI---FNV 205
L+E+ILAANYL+IK L D ++V + ++R S EI FN+
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVV------AEMIRGRSPEEIRRTFNI 147
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 4/166 (2%)
Query: 189 VNSAILRKSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXX---IVPLPNVNSAILRK 245
V S ++ S +GE F VD +IA+ S+ +K + + P+PNV S++L+K
Sbjct: 5 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQK 64
Query: 246 VIQWATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLD 305
VI+WA +H ++ + SWD +FLKVDQ L+E+ILAANYL+IK LLD
Sbjct: 65 VIEWAEHHRDSNFPDEDDDDSR-KSAPVDSWDREFLKVDQEXLYEIILAANYLNIKPLLD 123
Query: 306 VTCKTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEEK 351
CK VA I+G++PEEIR+TFNI NDFT EE +R+ENEW E++
Sbjct: 124 AGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAEDR 169
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 4/160 (2%)
Query: 3 NIKLQSSDGEIFNVDFEIAKSSVTIKTMVXXXXXXXXXXX---IVPLPNVNSAILRKVIQ 59
N+ L S +GE F VD +IA+ S+ +K + + P+PNV S++L+KVI+
Sbjct: 8 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQKVIE 67
Query: 60 WATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTC 119
WA +H ++ + SWD +FLKVDQ L+E+ILAANYL+IK LLD C
Sbjct: 68 WAEHHRDSNFPDEDDDDSR-KSAPVDSWDREFLKVDQEXLYEIILAANYLNIKPLLDAGC 126
Query: 120 KTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
K VA I+G++PEEIR+TFNI NDFT EE +R+ENEW
Sbjct: 127 KVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 161 LFELILAANYLDIKGLED 178
L+E+ILAANYL+IK L D
Sbjct: 106 LYEIILAANYLNIKPLLD 123
>pdb|1U9C|A Chain A, Crystallographic Structure Of Apc35852
Length = 224
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 31/111 (27%)
Query: 82 DDISSWDADFLKVDQGTLFEL------------------ILAANYLDIKGLLDVTCKTVA 123
DD +DA FL GT+F+ I+AA GL++ T K
Sbjct: 85 DDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVXHGPSGLVNATYKDGT 144
Query: 124 NMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCTLFELIL---AANYL 171
++KGKT FT EE +V + L E L AN++
Sbjct: 145 PIVKGKT----------VTSFTDEEEREVGLDVHMPFLLESTLRLRGANFV 185
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 18/67 (26%)
Query: 271 DDISSWDADFLKVDQGTLFEL------------------ILAANYLDIKGLLDVTCKTVA 312
DD +DA FL GT+F+ I+AA GL++ T K
Sbjct: 85 DDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVXHGPSGLVNATYKDGT 144
Query: 313 NMIKGKT 319
++KGKT
Sbjct: 145 PIVKGKT 151
>pdb|1VCB|B Chain B, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|E Chain E, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|H Chain H, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|K Chain K, The Vhl-Elonginc-Elonginb Structure
Length = 112
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVX-XXXXXXXXXXIVPLPNVNSAILRKVIQWAT 62
+KL SSDG F V E A +S TIK M+ V + S +L KV + T
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 63 YHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLD 110
Y R + S+ +F + L EL++AAN+LD
Sbjct: 79 Y--------------KVRYTNSSTEIPEFPIAPEIAL-ELLMAANFLD 111
>pdb|2C9W|C Chain C, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
pdb|2IZV|C Chain C, Crystal Structure Of Socs-4 In Complex With Elongin-B And
Elongin-C At 2.55a Resolution
pdb|3DCG|B Chain B, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
pdb|3DCG|D Chain D, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
pdb|3ZRC|B Chain B, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|E Chain E, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|H Chain H, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|K Chain K, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRF|B Chain B, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|E Chain E, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|H Chain H, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|K Chain K, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZTC|B Chain B, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|E Chain E, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|H Chain H, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|K Chain K, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTD|B Chain B, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|E Chain E, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|H Chain H, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|K Chain K, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZUN|B Chain B, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|E Chain E, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|H Chain H, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|K Chain K, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|4B95|B Chain B, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|E Chain E, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|H Chain H, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|K Chain K, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B9K|B Chain B, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|H Chain H, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|K Chain K, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4AJY|C Chain C, Von Hippel-Lindau Protein-Elonginb-Elonginc Complex, Bound
To Hif1- Alpha Peptide
pdb|4AWJ|B Chain B, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|E Chain E, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|H Chain H, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|K Chain K, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
Length = 97
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVX-XXXXXXXXXXIVPLPNVNSAILRKVIQ 59
M +KL SSDG F V E A +S TIK M+ V + S +L KV
Sbjct: 1 MMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCM 60
Query: 60 WATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLD 110
+ TY R + S+ +F + L EL++AAN+LD
Sbjct: 61 YFTY--------------KVRYTNSSTEIPEFPIAPEIAL-ELLMAANFLD 96
>pdb|4B9K|E Chain E, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
Length = 97
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVX-XXXXXXXXXXIVPLPNVNSAILRKVIQ 59
M +KL SSDG F V E A +S TIK M+ V + S +L KV
Sbjct: 1 MMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCM 60
Query: 60 WATYHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLD 110
+ TY R + S+ +F + L EL++AAN+LD
Sbjct: 61 YFTY--------------KVRYTNSSTEIPEFPIAPEIAL-ELLMAANFLD 96
>pdb|1LM8|C Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
pdb|1LQB|B Chain B, Crystal Structure Of A Hydroxylated Hif-1 Alpha Peptide
Bound To The PvhlELONGIN-CELONGIN-B Complex
pdb|2FNJ|C Chain C, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein
Gustavus In Complex With Elongin B And Elongin C
pdb|2JZ3|C Chain C, Socs Box Elonginbc Ternary Complex
pdb|3ZKJ|B Chain B, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|E Chain E, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 96
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVX-XXXXXXXXXXIVPLPNVNSAILRKVIQWAT 62
+KL SSDG F V E A +S TIK M+ V + S +L KV + T
Sbjct: 3 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62
Query: 63 YHXXXXXXXXXXXXXXXRTDDISSWDADFLKVDQGTLFELILAANYLD 110
Y R + S+ +F + L EL++AAN+LD
Sbjct: 63 Y--------------KVRYTNSSTEIPEFPIAPEIAL-ELLMAANFLD 95
>pdb|3ESW|A Chain A, Complex Of Yeast Pngase With Glcnac2-Iac
Length = 355
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 142 NDFTQAEEEQVRKENEWCTLFELILAANYLDIKGLEDEDEEI 183
ND + E + + EWC LF LIL + LD++ + + ++ +
Sbjct: 192 NDPIKLLETRKGRXGEWCNLFTLILKSFGLDVRYVWNREDHV 233
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 120 KTVANMIKGKTPEEIRKTFNIK 141
K VA +KG+TPEE++K + ++
Sbjct: 47 KKVAQYVKGRTPEEVKKHYELE 68
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 309 KTVANMIKGKTPEEIRKTFNIK 330
K VA +KG+TPEE++K + ++
Sbjct: 47 KKVAQYVKGRTPEEVKKHYELE 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,682,706
Number of Sequences: 62578
Number of extensions: 309378
Number of successful extensions: 976
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 58
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)