RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4644
(351 letters)
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A*
2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B*
2ovq_A*
Length = 159
Score = 182 bits (463), Expect = 2e-57
Identities = 134/158 (84%), Positives = 146/158 (92%), Gaps = 1/158 (0%)
Query: 3 NIKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDED-EEIVPLPNVNSAILRKVIQWA 61
+IKLQSSDGEIF VD EIAK SVTIKTM+EDLG++DE ++ VPLPNVN+AIL+KVIQW
Sbjct: 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 61
Query: 62 TYHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
T+HKDDPPPPEDDENKEKRTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKT
Sbjct: 62 THHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
Query: 122 VANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
VANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 122 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159
Score = 176 bits (448), Expect = 4e-55
Identities = 131/159 (82%), Positives = 145/159 (91%), Gaps = 1/159 (0%)
Query: 191 SAILRKSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDED-EEIVPLPNVNSAILRKVIQW 249
++I +SSDGEIF VD EIAK SVTIKTM+EDLG++DE ++ VPLPNVN+AIL+KVIQW
Sbjct: 1 ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 60
Query: 250 ATYHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 309
T+HKDDPPPPEDDENKEKRTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 61 CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
Query: 310 TVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 348
TVANMIKGKTPEEIRKTFNIKNDFT+ EE QVRKEN+WC
Sbjct: 121 TVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich
repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A
{Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B
1ldk_D
Length = 141
Score = 180 bits (457), Expect = 1e-56
Identities = 124/146 (84%), Positives = 132/146 (90%), Gaps = 5/146 (3%)
Query: 1 MPNIKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQW 60
MP+IKLQSSDGEIF VD EIAK SVTIKTM+EDLG + VPLPNVN+AIL+KVIQW
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-----MDPVPLPNVNAAILKKVIQW 55
Query: 61 ATYHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
T+HKDDPPPPEDDENKEKRTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 56 CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 115
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTQ 146
TVANMIKGKTPEEIRKTFNIKNDFT+
Sbjct: 116 TVANMIKGKTPEEIRKTFNIKNDFTE 141
Score = 168 bits (427), Expect = 3e-52
Identities = 118/140 (84%), Positives = 126/140 (90%), Gaps = 5/140 (3%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATYHKD 255
+SSDGEIF VD EIAK SVTIKTM+EDLG + VPLPNVN+AIL+KVIQW T+HKD
Sbjct: 7 QSSDGEIFEVDVEIAKQSVTIKTMLEDLG-----MDPVPLPNVNAAILKKVIQWCTHHKD 61
Query: 256 DPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 315
DPPPPEDDENKEKRTDDI WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMI
Sbjct: 62 DPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 121
Query: 316 KGKTPEEIRKTFNIKNDFTQ 335
KGKTPEEIRKTFNIKNDFT+
Sbjct: 122 KGKTPEEIRKTFNIKNDFTE 141
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Length = 169
Score = 176 bits (447), Expect = 7e-55
Identities = 82/161 (50%), Positives = 120/161 (74%), Gaps = 4/161 (2%)
Query: 2 PNIKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE---IVPLPNVNSAILRKVI 58
N+ L S +GE F VD +IA+ S+ +K + D+G +D++++ ++P+PNV S++L+KVI
Sbjct: 7 SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVI 66
Query: 59 QWATYHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVT 118
+WA +H+D P EDD++ +++ + SWD +FLKVDQ L+E+ILAANYL+IK LLD
Sbjct: 67 EWAEHHRDSNFPDEDDDD-SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAG 125
Query: 119 CKTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
CK VA MI+G++PEEIR+TFNI NDFT EE +R+ENEW
Sbjct: 126 CKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
Score = 174 bits (441), Expect = 6e-54
Identities = 81/159 (50%), Positives = 120/159 (75%), Gaps = 4/159 (2%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE---IVPLPNVNSAILRKVIQWATY 252
S +GE F VD +IA+ S+ +K + D+G +D++++ ++P+PNV S++L+KVI+WA +
Sbjct: 12 VSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH 71
Query: 253 HKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 312
H+D P EDD++ +++ + SWD +FLKVDQ L+E+ILAANYL+IK LLD CK VA
Sbjct: 72 HRDSNFPDEDDDD-SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVA 130
Query: 313 NMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEEK 351
MI+G++PEEIR+TFNI NDFT EE +R+ENEW E++
Sbjct: 131 EMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAEDR 169
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling
protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB:
2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A*
3ogk_A* 3ogl_A* 3ogm_A*
Length = 160
Score = 168 bits (426), Expect = 7e-52
Identities = 92/159 (57%), Positives = 110/159 (69%), Gaps = 5/159 (3%)
Query: 2 PNIKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWA 61
I L+SSDGE F V+ +A S TI MVED + VPLPNV S IL KVI++
Sbjct: 4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDC----VDNGVPLPNVTSKILAKVIEYC 59
Query: 62 TYHKDDPPPP-EDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
H + E E DD+ +WDADF+K+DQ TLFELILAANYL+IK LLD+TC+
Sbjct: 60 KRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQ 119
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWC 159
TVA+MIKGKTPEEIR TFNIKNDFT EEE+VR+EN+W
Sbjct: 120 TVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWA 158
Score = 165 bits (418), Expect = 1e-50
Identities = 92/156 (58%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATYHKD 255
KSSDGE F V+ +A S TI MVED + VPLPNV S IL KVI++ H +
Sbjct: 9 KSSDGESFEVEEAVALESQTIAHMVEDDC----VDNGVPLPNVTSKILAKVIEYCKRHVE 64
Query: 256 DPPPP-EDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM 314
E E DD+ +WDADF+K+DQ TLFELILAANYL+IK LLD+TC+TVA+M
Sbjct: 65 AAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADM 124
Query: 315 IKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCEE 350
IKGKTPEEIR TFNIKNDFT EEE+VR+EN+W E
Sbjct: 125 IKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR
{Saccharomyces cerevisiae} SCOP: d.42.1.1
Length = 99
Score = 113 bits (284), Expect = 2e-31
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATY 63
+ L S D + + + A S T+K M+E E + + L +S IL K +++ Y
Sbjct: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGR--IELKQFDSHILEKAVEYLNY 63
Query: 64 HKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDI 111
+ EDD+ +F ++ EL+LAA+YL I
Sbjct: 64 NLKYSGVSEDDD-----------EIPEF-EIPTEMSLELLLAADYLSI 99
Score = 107 bits (268), Expect = 4e-29
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATYHKD 255
S D + + + A S T+K M+E E + + L +S IL K +++ Y+
Sbjct: 9 VSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGR--IELKQFDSHILEKAVEYLNYNLK 66
Query: 256 DPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDI 300
EDD+ +F ++ EL+LAA+YL I
Sbjct: 67 YSGVSEDDD-----------EIPEF-EIPTEMSLELLLAADYLSI 99
Score = 34.7 bits (80), Expect = 0.006
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 160 TLFELILAANYLDI 173
EL+LAA+YL I
Sbjct: 86 MSLELLLAADYLSI 99
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich,
lectin-like, SPRY, protein transport/signaling protein
complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B
1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Length = 96
Score = 103 bits (258), Expect = 1e-27
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE-IVPLPNVNSAILRKVIQWAT 62
+KL SSDG F V E A +S TIK M+ G E+E V + S +L KV + T
Sbjct: 3 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62
Query: 63 YHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLD 110
Y + +F + EL++AAN+LD
Sbjct: 63 YKVRYTNSSTEIP--------------EF-PIAPEIALELLMAANFLD 95
Score = 97.5 bits (243), Expect = 2e-25
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE-IVPLPNVNSAILRKVIQWATYHK 254
SSDG F V E A +S TIK M+ G E+E V + S +L KV + TY
Sbjct: 6 ISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV 65
Query: 255 DDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLD 299
+ +F + EL++AAN+LD
Sbjct: 66 RYTNSSTEIP--------------EF-PIAPEIALELLMAANFLD 95
Score = 31.2 bits (71), Expect = 0.11
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 160 TLFELILAANYLD 172
EL++AAN+LD
Sbjct: 83 IALELLMAANFLD 95
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta
sandwich, transcription, transcriptional elongation;
2.70A {Homo sapiens} SCOP: d.42.1.1
Length = 112
Score = 102 bits (256), Expect = 3e-27
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE-IVPLPNVNSAILRKVIQWAT 62
+KL SSDG F V E A +S TIK M+ G E+E V + S +L KV + T
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 63 YHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLD 110
Y + +F + EL++AAN+LD
Sbjct: 79 YKVRYTNSSTEIP--------------EF-PIAPEIALELLMAANFLD 111
Score = 96.8 bits (241), Expect = 4e-25
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 25/126 (19%)
Query: 175 GLEDEDEEIVPLPNVNSAILRKSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE-IV 233
G E D V L SSDG F V E A +S TIK M+ G E+E V
Sbjct: 10 GCEGPDAMYVKL---------ISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
Query: 234 PLPNVNSAILRKVIQWATYHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 293
+ S +L KV + TY + +F + EL++
Sbjct: 61 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIP--------------EF-PIAPEIALELLM 105
Query: 294 AANYLD 299
AAN+LD
Sbjct: 106 AANFLD 111
Score = 30.5 bits (69), Expect = 0.23
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 160 TLFELILAANYLD 172
EL++AAN+LD
Sbjct: 99 IALELLMAANFLD 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 4e-12
Identities = 57/309 (18%), Positives = 89/309 (28%), Gaps = 116/309 (37%)
Query: 60 WATYHKDDPPPPEDDENKEKRTDDISSWDADFL-----KVDQGTL--FELILAA------ 106
++K P P E ++ T FL V+ + F+ +L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 107 -NYL---DIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCTLF 162
YL DI L A +++ ++ IKN
Sbjct: 93 NCYLEGNDIHAL-------AAKLLQENDTTLVKTKELIKN-------------------- 125
Query: 163 ELILAANYLDIKGLEDEDEEIVPLPNV-NSAILRKSSDGE-----IF----NVD--F-EI 209
Y+ + + P NSA+ R +G IF N D F E+
Sbjct: 126 -------YITARIMAKR-----PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 210 AKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATYHKDDPPPPEDDENKEKR 269
T +V DL ++ E + L D E +
Sbjct: 174 RDLYQTYHVLVGDL-IKFSAETLSELI---------------------RTTLDAEKVFTQ 211
Query: 270 TDDISSW--------DADFLK---VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 318
+I W D D+L + L +I A+Y+ VT K + G
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYV-------VTAKLL-----GF 258
Query: 319 TPEEIRKTF 327
TP E+R
Sbjct: 259 TPGELRSYL 267
Score = 49.7 bits (118), Expect = 1e-06
Identities = 54/294 (18%), Positives = 89/294 (30%), Gaps = 107/294 (36%)
Query: 54 LRKVIQWATYH--------------KDDPPPPEDDENKEKRTDDISSW--------DADF 91
LR + + TYH + D E + +I W D D+
Sbjct: 173 LRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 92 LK---VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTQAE 148
L + L +I A+Y+ VT K + G TP E+R +K ++
Sbjct: 231 LLSIPI-SCPLIGVIQLAHYV-------VTAKLL-----GFTPGELRS--YLKGATGHSQ 275
Query: 149 E----EQVRKENEWCTLFELILAA-NYLDIKGLEDEDEEIVPLPNVNSAILRKSSDGEIF 203
+ + + W + F + A L G+ E P ++ +IL S +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYPNTSLPPSILEDSLENN-- 331
Query: 204 NVDFEIAKSSVTIKTM--VEDLGLEDEDEEI------------VPLPNVNSA-------- 241
E S M + +L E + + V + VN A
Sbjct: 332 ----EGVPSP-----MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 242 ---------ILRKVIQWATYHKDDPPPPEDDENK---EKRTDDISSWDADFLKV 283
LRK P D+++ +R S+ FL V
Sbjct: 383 PQSLYGLNLTLRKA----------KAPSGLDQSRIPFSERKLKFSN---RFLPV 423
Score = 39.3 bits (91), Expect = 0.002
Identities = 50/294 (17%), Positives = 89/294 (30%), Gaps = 115/294 (39%)
Query: 85 SSWDADFLKVDQGT---LFELILAA------NYLDIKGLLDVTCKTVAN-------M--I 126
SW+ F + LF + + L L D ++ N M I
Sbjct: 287 DSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED----SLENNEGVPSPMLSI 341
Query: 127 KGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCTLF----ELILAANYLDIKGLE----- 177
T E+++ N N +QV +L L+++ + GL
Sbjct: 342 SNLTQEQVQDYVNKTNS-HLPAGKQVE-----ISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 178 -----DEDEEIVP------------LPNV----NSAILRKSSDGEIFNVDFEIAKSSVTI 216
D+ +P LP V +S +L +SD ++ ++ K++V+
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASDL----INKDLVKNNVSF 450
Query: 217 KTMVEDLG-----------LEDEDEEIVPLPNVNSAILRKVIQWATYHKDDPPPPEDDEN 265
+D+ L I + I+R ++W
Sbjct: 451 N--AKDIQIPVYDTFDGSDLRVLSGSISE--RIVDCIIRLPVKW---------------- 490
Query: 266 KEKRTDDISSWDADF----------L--KVDQGTLFELILAANYLDIKGLLDVT 307
E T ++ DF L + GT +I+A G LD+
Sbjct: 491 -ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA-------GTLDIN 536
Score = 32.3 bits (73), Expect = 0.31
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 51/126 (40%)
Query: 16 VDFEIAKSSVTIKTMVEDLG-----------LEDEDEEIVPLPNVNSAILRKVIQWATYH 64
++ ++ K++V+ +D+ L I + I+R ++W
Sbjct: 439 INKDLVKNNVSFN--AKDIQIPVYDTFDGSDLRVLSGSISE--RIVDCIIRLPVKW---- 490
Query: 65 KDDPPPPEDDENKEKRTDDISSWDADF----------L--KVDQGTLFELILAANYLDIK 112
E T ++ DF L + GT +I+A
Sbjct: 491 -------------ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA------- 530
Query: 113 GLLDVT 118
G LD+
Sbjct: 531 GTLDIN 536
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 6e-11
Identities = 70/436 (16%), Positives = 129/436 (29%), Gaps = 123/436 (28%)
Query: 22 KSSVTIKTMVEDLGLEDE-DEEI--VPLPNVNSAILRKVIQWATYHKDDPP---PPEDDE 75
K+ V + ++ + D +I + L N NS + ++ DP +
Sbjct: 163 KTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 76 NKEKRTDDISSWDADFLKVDQG--TLFELILA----ANYLDIKGLLDVTCKT-------- 121
N + R I + LK L L+L A + +++CK
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWN---AFNLSCKILLTTRFKQ 276
Query: 122 VANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCTLFEL-------------ILAA 168
V + + T I + T E + + + C +L I+A
Sbjct: 277 VTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 169 ----------NYLDIKGLEDEDEEIVP--LPNVNSAILRKS-SDGEIFNVDFEI------ 209
N+ + D+ I+ L + A RK +F I
Sbjct: 336 SIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 210 ----AKSSVTIKTMVEDL---GL--EDEDEEIVPLPNV---------NSAIL-RKVIQ-- 248
+ +V L L + E + +P++ N L R ++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 249 --WATYHKDDPPPPEDDE-------------NKEKRTDDISSW--DADFL--KV------ 283
T+ DD PP D+ +R D FL K+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 284 --DQGTLFELIL-AANYLD------------IKGLLDVTCKTVANMIKGKTPEEIRKTFN 328
G++ + Y + +LD K N+I K + +R
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 329 IKNDFTQAE-EEQVRK 343
+++ E +QV++
Sbjct: 574 AEDEAIFEEAHKQVQR 589
Score = 51.0 bits (121), Expect = 3e-07
Identities = 57/367 (15%), Positives = 111/367 (30%), Gaps = 106/367 (28%)
Query: 15 NVDFEIAKS--------SVTIKTMVEDLGLED-ED-----------EEIVPLPNVNSAIL 54
++DFE + SV V++ +D +D + I+ + S L
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 55 RKVIQWATYHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGL 114
R + W +K++ V + E +L NY +
Sbjct: 66 R--LFWTL------------LSKQEEM------------VQK--FVEEVLRINYKFLMSP 97
Query: 115 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCTLFELILAANYLDIK 174
+ + P + + + + D + + K N + + L +
Sbjct: 98 IKTEQ---------RQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLR----Q 142
Query: 175 GLEDEDEEIVPLPNVNSAILRKSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDE-DEEI- 232
L E+ P NV ++ DG K+ V + ++ + D +I
Sbjct: 143 AL----LELRPAKNV---LI----DG-----VLGSGKTWVALDV-CLSYKVQCKMDFKIF 185
Query: 233 -VPLPNVNSAILRKVIQWATYHKDDPP---PPEDDENKEKRTDDISSWDADFLKVDQG-- 286
+ L N NS + ++ DP + N + R I + LK
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 287 TLFELILA----ANYLDIKGLLDVTCKT--------VANMIKGKTPEEIRKTFNIKNDFT 334
L L+L A + +++CK V + + T I + T
Sbjct: 246 CL--LVLLNVQNAKAWN---AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LT 299
Query: 335 QAEEEQV 341
E + +
Sbjct: 300 PDEVKSL 306
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta
protein, actin-like fold, alternative splicing, calcium,
glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB:
3cj7_A* 3cj9_A* 3cja_A*
Length = 456
Score = 35.8 bits (81), Expect = 0.021
Identities = 34/310 (10%), Positives = 77/310 (24%), Gaps = 49/310 (15%)
Query: 57 VIQWATYHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLD 116
V +W ++D + + + ISS+ D A L L+
Sbjct: 50 VYKWPADKENDTGIVGQHSSCDVQGGGISSYANDP-----------SKAGQSL--VRCLE 96
Query: 117 VTCKTVANMIKGKTPEEIRKTFNIKNDFTQAEEEQVRKENEWCTLFELILAANYLD--IK 174
+ V TP + T ++ + + + + +
Sbjct: 97 QALRDVPRDRHASTPLYLGATAGMR---LLNLTSPEATARVLEAVTQTLTQYPFDFRGAR 153
Query: 175 GLEDEDEEIVPLPNVN---------SAILRKSSDGEIFNVDFEIAKSSVTIKTMVEDLGL 225
L +DE + N + R + ++ +S I
Sbjct: 154 ILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFETTSPSE 213
Query: 226 EDEDEEIVPLPNVN-----------------SAILRKVIQWATYHKDDPPPPEDDENKEK 268
+ +E + L + +L +Q +H P ++
Sbjct: 214 DPGNEVHLRLYGQHYRVYTHSFLCYGRDQILLRLLASALQIHRFHPCWPKGYSTQVLLQE 273
Query: 269 RTDDISSWDADFLKVDQGTLFELILAANY----LDIKGLLDVT-CKTVANMIKGKTPEEI 323
+ + + L +N + L +++ C G +
Sbjct: 274 VYQSPCTMGQRPRAFNGSAIVSLSGTSNATLCRDLVSRLFNISSCPFSQCSFNGVFQPPV 333
Query: 324 RKTFNIKNDF 333
F + F
Sbjct: 334 AGNFIAFSAF 343
>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice
dwarf virus} SCOP: e.28.1.2
Length = 1019
Score = 29.4 bits (65), Expect = 2.1
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Query: 156 NEWCTLFELILAANYLDIKGLEDE-DEEIVPLPNVNSAILRKSSDGEIFNVDFEIAKSSV 214
++ L L +D D + L +++S+ +S +G + I V
Sbjct: 813 ADFDAANALRLQRRRVDNTSYTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKV 872
Query: 215 TIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATYHKDDPPPP 260
++ DL E+ PNV + + + HK D PP
Sbjct: 873 NMRAKF-DLQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDYRPP 917
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase;
3.00A {Giardia intestinalis} PDB: 2ffl_A
Length = 756
Score = 27.6 bits (61), Expect = 6.8
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 153 RKENEWCTLFELILAANYLDIKGLE 177
K W ++E I+ + + G+
Sbjct: 399 AKSKTWADMYEEIVGSIFTGPNGIY 423
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin,
fusion of virus membrane with membrane, membrane fusion,
sialic acid, virion; HET: NAG BMA; 2.70A {Artificial
gene}
Length = 74
Score = 25.6 bits (56), Expect = 7.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 122 VANMIKGKTPEEIRKTFNIKN 142
VA +KG+TPEE++K + +++
Sbjct: 49 VAQYVKGRTPEEVKKHYELEH 69
Score = 25.6 bits (56), Expect = 7.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 311 VANMIKGKTPEEIRKTFNIKN 331
VA +KG+TPEE++K + +++
Sbjct: 49 VAQYVKGRTPEEVKKHYELEH 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.133 0.381
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,809,030
Number of extensions: 376315
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 63
Length of query: 351
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 257
Effective length of database: 4,077,219
Effective search space: 1047845283
Effective search space used: 1047845283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.4 bits)