RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4644
(351 letters)
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein
complex Cbf3 subunit D, CBF3D {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 70
Score = 122 bits (308), Expect = 1e-35
Identities = 46/70 (65%), Positives = 56/70 (80%)
Query: 84 ISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKND 143
+ SWD +FLKVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI ND
Sbjct: 1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 60
Query: 144 FTQAEEEQVR 153
FT EE +R
Sbjct: 61 FTPEEEAAIR 70
Score = 122 bits (308), Expect = 1e-35
Identities = 46/70 (65%), Positives = 56/70 (80%)
Query: 273 ISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKND 332
+ SWD +FLKVDQ L+E+ILAANYL+IK LLD CK VA MI+G++PEEIR+TFNI ND
Sbjct: 1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 60
Query: 333 FTQAEEEQVR 342
FT EE +R
Sbjct: 61 FTPEEEAAIR 70
Score = 35.0 bits (81), Expect = 0.001
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 160 TLFELILAANYLDIKGLED 178
L+E+ILAANYL+IK L D
Sbjct: 15 MLYEIILAANYLNIKPLLD 33
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 55
Score = 107 bits (268), Expect = 5e-30
Identities = 51/54 (94%), Positives = 52/54 (96%)
Query: 86 SWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 139
WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN
Sbjct: 2 VWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 55
Score = 107 bits (268), Expect = 5e-30
Identities = 51/54 (94%), Positives = 52/54 (96%)
Query: 275 SWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 328
WD +FLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN
Sbjct: 2 VWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 55
Score = 36.9 bits (86), Expect = 2e-04
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 160 TLFELILAANYLDIKGLED 178
TLFELILAANYLDIKGL D
Sbjct: 14 TLFELILAANYLDIKGLLD 32
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 99
Score = 105 bits (264), Expect = 5e-29
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATY 63
+ L S D + + + A S T+K M+E E + + L +S IL K +++ Y
Sbjct: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPF--RESKGRIELKQFDSHILEKAVEYLNY 63
Query: 64 HKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDI 111
+ EDD D+I ++ + EL+LAA+YL I
Sbjct: 64 NLKYSGVSEDD-------DEIPEFE-----IPTEMSLELLLAADYLSI 99
Score = 100 bits (250), Expect = 7e-27
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATYHKD 255
S D + + + A S T+K M+E E + + L +S IL K +++ Y+
Sbjct: 9 VSKDDKEYEISRSAAMISPTLKAMIEGPF--RESKGRIELKQFDSHILEKAVEYLNYNLK 66
Query: 256 DPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDI 300
EDD D+I ++ + EL+LAA+YL I
Sbjct: 67 YSGVSEDD-------DEIPEFE-----IPTEMSLELLLAADYLSI 99
Score = 32.1 bits (73), Expect = 0.022
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 84 ISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKND 143
+S D ++ + ++ + E+ + N
Sbjct: 9 VSK-DDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQF-DSHILEKAVEYLNYNLK 66
Query: 144 FTQAEEEQVRKENEWC----TLFELILAANYLDI 173
++ E+ E+ EL+LAA+YL I
Sbjct: 67 YSGVSEDDDEIP-EFEIPTEMSLELLLAADYLSI 99
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 96
Score = 104 bits (261), Expect = 2e-28
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 4 IKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE-IVPLPNVNSAILRKVIQWAT 62
+KL SSDG F V E A +S TIK M+ G E+E V + S +L KV + T
Sbjct: 3 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62
Query: 63 YHKDDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLD 110
Y +I + + EL++AAN+LD
Sbjct: 63 YKVRYTNSS----------TEIPEFP-----IAPEIALELLMAANFLD 95
Score = 98.3 bits (245), Expect = 3e-26
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE-IVPLPNVNSAILRKVIQWATYHK 254
SSDG F V E A +S TIK M+ G E+E V + S +L KV + TY
Sbjct: 6 ISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV 65
Query: 255 DDPPPPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLD 299
+I + + EL++AAN+LD
Sbjct: 66 RYTNSS----------TEIPEFP-----IAPEIALELLMAANFLD 95
Score = 30.1 bits (68), Expect = 0.100
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 160 TLFELILAANYLD 172
EL++AAN+LD
Sbjct: 83 IALELLMAANFLD 95
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex
Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 72
Score = 98.0 bits (244), Expect = 2e-26
Identities = 29/71 (40%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 3 NIKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE---IVPLPNVNSAILRKVIQ 59
N+ L S +GE F VD +IA+ S+ +K + D+G +D++++ ++P+PNV S++L+KVI+
Sbjct: 2 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 61
Query: 60 WATYHKDDPPP 70
WA +H+D P
Sbjct: 62 WAEHHRDSNFP 72
Score = 91.8 bits (228), Expect = 3e-24
Identities = 28/72 (38%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 191 SAILRKSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEE---IVPLPNVNSAILRKVI 247
S ++ S +GE F VD +IA+ S+ +K + D+G +D++++ ++P+PNV S++L+KVI
Sbjct: 1 SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVI 60
Query: 248 QWATYHKDDPPP 259
+WA +H+D P
Sbjct: 61 EWAEHHRDSNFP 72
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 89.0 bits (221), Expect = 3e-23
Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 5/66 (7%)
Query: 2 PNIKLQSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWA 61
P+IKLQSSDGEIF VD EIAK SVTIKTM+EDLG + VPLPNVN+AIL+KVIQW
Sbjct: 1 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-----MDPVPLPNVNAAILKKVIQWC 55
Query: 62 TYHKDD 67
T+HKDD
Sbjct: 56 THHKDD 61
Score = 80.1 bits (198), Expect = 7e-20
Identities = 44/61 (72%), Positives = 50/61 (81%), Gaps = 5/61 (8%)
Query: 196 KSSDGEIFNVDFEIAKSSVTIKTMVEDLGLEDEDEEIVPLPNVNSAILRKVIQWATYHKD 255
+SSDGEIF VD EIAK SVTIKTM+EDLG + VPLPNVN+AIL+KVIQW T+HKD
Sbjct: 6 QSSDGEIFEVDVEIAKQSVTIKTMLEDLG-----MDPVPLPNVNAAILKKVIQWCTHHKD 60
Query: 256 D 256
D
Sbjct: 61 D 61
Score = 31.2 bits (71), Expect = 0.022
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 176 LEDEDEEIVPLPNVNSAILRK 196
LED + VPLPNVN+AIL+K
Sbjct: 30 LEDLGMDPVPLPNVNAAILKK 50
>d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 134
Score = 27.0 bits (59), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 49 VNSAILRKVIQWATYHKDDPPPPEDDENKEKRTDDISSWDAD 90
+SA+ RK + A D+ DD N K T ++ DAD
Sbjct: 77 AHSAMARKESRGAHQRLDEGCTERDDVNFLKHT--LAFRDAD 116
Score = 27.0 bits (59), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 238 VNSAILRKVIQWATYHKDDPPPPEDDENKEKRTDDISSWDAD 279
+SA+ RK + A D+ DD N K T ++ DAD
Sbjct: 77 AHSAMARKESRGAHQRLDEGCTERDDVNFLKHT--LAFRDAD 116
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit,
KamD {Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 26.7 bits (59), Expect = 5.6
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 16 VDFEIAKSSVTI-KTMVEDLGLEDEDEEIVPLPNV 49
+F ++VT+ + + LG++ D + VPLPN+
Sbjct: 27 QEFIEKHTTVTVERAVCRLLGIDGVDTDEVPLPNI 61
Score = 26.7 bits (59), Expect = 5.6
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 205 VDFEIAKSSVTI-KTMVEDLGLEDEDEEIVPLPNV 238
+F ++VT+ + + LG++ D + VPLPN+
Sbjct: 27 QEFIEKHTTVTVERAVCRLLGIDGVDTDEVPLPNI 61
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain
{Escherichia coli [TaxId: 562]}
Length = 110
Score = 24.8 bits (54), Expect = 8.7
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 16/63 (25%)
Query: 120 KTVANMIKGKTPEEIR-------KTFNIKNDFTQAEEEQVRKENEWCTLFELILAANYLD 172
V +I+G + IR K + + D + W ++ ++ +
Sbjct: 27 GYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKS---------HEHWVSVIRQLIHLGLVT 77
Query: 173 IKG 175
Sbjct: 78 QNI 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.133 0.381
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,425,628
Number of extensions: 72396
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 34
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.3 bits)