Query psy4648
Match_columns 116
No_of_seqs 127 out of 836
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 22:08:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4193|consensus 99.8 3.8E-19 8.3E-24 152.6 9.6 88 12-99 514-604 (610)
2 KOG4564|consensus 98.7 1.6E-08 3.4E-13 85.2 4.9 70 10-79 349-421 (473)
3 PF00002 7tm_2: 7 transmembran 98.6 5E-09 1.1E-13 78.9 0.0 46 12-57 195-242 (242)
4 KOG4289|consensus 98.4 1E-06 2.2E-11 81.8 8.1 60 13-72 2339-2399(2531)
5 PF05462 Dicty_CAR: Slime mold 87.4 3.3 7.1E-05 33.3 7.3 54 22-75 209-268 (303)
6 PF01102 Glycophorin_A: Glycop 73.9 3.9 8.5E-05 28.9 2.9 26 40-65 65-90 (122)
7 PF10323 7TM_GPCR_Srv: Serpent 69.7 32 0.0007 26.8 7.5 24 54-77 260-283 (283)
8 PF02101 Ocular_alb: Ocular al 68.4 9 0.00019 32.3 4.3 46 16-61 245-310 (405)
9 PF12273 RCR: Chitin synthesis 59.5 6.7 0.00015 27.3 1.8 21 44-64 3-23 (130)
10 PF10328 7TM_GPCR_Srx: Serpent 47.2 45 0.00097 25.5 4.7 58 15-75 206-273 (274)
11 KOG4812|consensus 44.4 37 0.00081 27.0 3.9 30 41-74 224-254 (262)
12 PHA03087 G protein-coupled che 44.1 87 0.0019 24.2 6.0 70 9-78 238-324 (335)
13 PF14110 DUF4282: Domain of un 36.6 1.2E+02 0.0026 19.7 5.3 49 20-68 21-69 (90)
14 KOG4219|consensus 32.1 1E+02 0.0022 26.4 4.8 69 10-78 256-336 (423)
15 PHA03235 DNA packaging protein 31.6 2.2E+02 0.0048 23.5 6.8 19 59-77 304-323 (409)
16 PHA03240 envelope glycoprotein 30.8 92 0.002 24.5 4.1 20 55-74 223-244 (258)
17 TIGR00869 sec62 protein transl 28.7 1.1E+02 0.0024 23.9 4.3 38 21-58 119-163 (232)
18 PRK14749 hypothetical protein; 28.6 70 0.0015 17.3 2.2 7 27-33 5-11 (30)
19 COG4890 Predicted outer membra 27.6 71 0.0015 17.9 2.2 7 27-33 5-11 (37)
20 PF13994 PgaD: PgaD-like prote 26.0 2.2E+02 0.0048 19.9 5.1 17 99-115 120-136 (138)
21 PF11970 Git3_C: G protein-cou 25.6 1.9E+02 0.004 18.5 4.3 25 42-66 48-72 (76)
22 TIGR02106 cyd_oper_ybgT cyd op 24.7 90 0.002 16.9 2.2 7 27-33 5-11 (30)
23 PHA03351 tegument protein UL16 23.6 27 0.00059 26.5 0.1 16 21-36 8-23 (235)
24 PF08173 YbgT_YccB: Membrane b 22.5 1.1E+02 0.0023 16.3 2.2 7 27-33 5-11 (28)
25 PF09680 Tiny_TM_bacill: Prote 21.1 69 0.0015 16.5 1.3 15 15-29 10-24 (24)
26 PHA03105 EEV glycoprotein; Pro 20.6 1.5E+02 0.0032 22.4 3.4 24 51-74 14-37 (188)
No 1
>KOG4193|consensus
Probab=99.79 E-value=3.8e-19 Score=152.58 Aligned_cols=88 Identities=25% Similarity=0.350 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhhcc-CcchHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccCCCCCC-Ccee
Q psy4648 12 RDFRLYVRLALIMGLTWSVGLFAGYI-DNEPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSINRPIRP-ASFS 88 (116)
Q Consensus 12 ~~~~~~~~L~~lmG~tWi~g~l~~~~-~~~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~~~~~~-~~~s 88 (116)
+..+.++.|++|||+||+||++++.. ....++|+|+++|++||+|||++||+ ++++|++|+|++.+..++.+. +..+
T Consensus 514 ~~~~~~l~L~~lLGlTW~fgi~s~~~~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~~~~~~~s 593 (610)
T KOG4193|consen 514 SLIRSALALLFLLGLTWIFGIFSWLPGTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDSSASENGS 593 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCCCCCcccc
Confidence 44788889999999999999999998 56789999999999999999999998 689999999999866544333 3334
Q ss_pred eccccccCccc
Q psy4648 89 CSNTDMSNNTN 99 (116)
Q Consensus 89 ~s~t~~~~~~~ 99 (116)
.+++.+...++
T Consensus 594 ~~~s~~~~~~~ 604 (610)
T KOG4193|consen 594 LTSSSSRNSSR 604 (610)
T ss_pred ccccccccccc
Confidence 33333333333
No 2
>KOG4564|consensus
Probab=98.71 E-value=1.6e-08 Score=85.20 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhhccC--cchHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccC
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLFAGYID--NEPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSIN 79 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l~~~~~--~~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~ 79 (116)
.++-.|+.+.|.|++|++.++-......+ ..+..|+-..++++||+|+.++||+ |+||+.++||+|+++.
T Consensus 349 y~K~vKaTLvLIPLfGI~~ilf~~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~ 421 (473)
T KOG4564|consen 349 YRKLVKATLVLIPLFGIHYILFAFRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWR 421 (473)
T ss_pred HHHHHHHHHHHHHHcCCeeEEEEecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcC
Confidence 56667888899999999986644443322 1233477778999999999999996 9999999999998873
No 3
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.64 E-value=5e-09 Score=78.93 Aligned_cols=46 Identities=37% Similarity=0.601 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhhcc--CcchHHHHHHHHhhHHHHHH
Q psy4648 12 RDFRLYVRLALIMGLTWSVGLFAGYI--DNEPLWYAFIALNTLQGVFI 57 (116)
Q Consensus 12 ~~~~~~~~L~~lmG~tWi~g~l~~~~--~~~~~~ylf~ilnslQG~fI 57 (116)
+..+..+.|++++|++|+++++++.. ....++|+|+++|++||++|
T Consensus 195 ~~~~~~~~L~~llg~~w~~~~~~~~~~~~~~~~~~lf~i~nslQG~~I 242 (242)
T PF00002_consen 195 KILRASLILLPLLGITWLFGILAVSDSVDSLVFQYLFAILNSLQGFFI 242 (242)
T ss_dssp ------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHheeeeeeecccchHHHHHHHHHHHHcCcceeC
Confidence 37888999999999999999999877 45678999999999999986
No 4
>KOG4289|consensus
Probab=98.40 E-value=1e-06 Score=81.81 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhchhhhhhhhhhccCcchHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHH
Q psy4648 13 DFRLYVRLALIMGLTWSVGLFAGYIDNEPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLF 72 (116)
Q Consensus 13 ~~~~~~~L~~lmG~tWi~g~l~~~~~~~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~ 72 (116)
-++-.+.+++++|.||.+++++.......+.|+|..++.+||.|++++||+ +.++|++++
T Consensus 2339 ~lq~~fl~llllsatwl~~ll~vn~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2339 VLQHSFLLLLLLSATWLLGLLAVNPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 466777889999999999999998888889999999999999999999996 899999996
No 5
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=87.42 E-value=3.3 Score=33.26 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=36.1
Q ss_pred Hhhchhhhhhhhhhcc---C--cchHHHHHHHHhhHHHHHHHHHHhcCHHH-HHHHHHhh
Q psy4648 22 LIMGLTWSVGLFAGYI---D--NEPLWYAFIALNTLQGVFIFLAFTCTNKM-IRNLFKSS 75 (116)
Q Consensus 22 ~lmG~tWi~g~l~~~~---~--~~~~~ylf~ilnslQG~fIFl~~~l~~~V-~~~~~k~~ 75 (116)
.++=+.|+++++.-.. + +..+.++-+.+..+||++-.++|.+|++. ++.+..++
T Consensus 209 ~ifiicw~fa~INRI~~~~~~~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~ 268 (303)
T PF05462_consen 209 LIFIICWIFATINRIYNFIGKNPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKI 268 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444589999874321 1 22344666678899999999999997665 55554444
No 6
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.91 E-value=3.9 Score=28.94 Aligned_cols=26 Identities=8% Similarity=0.278 Sum_probs=21.6
Q ss_pred chHHHHHHHHhhHHHHHHHHHHhcCH
Q psy4648 40 EPLWYAFIALNTLQGVFIFLAFTCTN 65 (116)
Q Consensus 40 ~~~~ylf~ilnslQG~fIFl~~~l~~ 65 (116)
.....+|.++...=|+.++++||++|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999743
No 7
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=69.65 E-value=32 Score=26.81 Aligned_cols=24 Identities=0% Similarity=0.025 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhcc
Q psy4648 54 GVFIFLAFTCTNKMIRNLFKSSSS 77 (116)
Q Consensus 54 G~fIFl~~~l~~~V~~~~~k~~~~ 77 (116)
++=.+.+.++|+++|++.++.++|
T Consensus 260 ~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 260 FINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred hhhhHHhhhccHHHHHHHHHHcCC
Confidence 333667888899999999988765
No 8
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=68.38 E-value=9 Score=32.30 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=32.0
Q ss_pred HHHHHHHhhchhhhhhhhh----hc----cC------------cchHHHHHHHHhhHHHHHHHHHH
Q psy4648 16 LYVRLALIMGLTWSVGLFA----GY----ID------------NEPLWYAFIALNTLQGVFIFLAF 61 (116)
Q Consensus 16 ~~~~L~~lmG~tWi~g~l~----~~----~~------------~~~~~ylf~ilnslQG~fIFl~~ 61 (116)
.++++.+++=+.|+.-++- +. .+ ....||+..++|.+||++-.+.|
T Consensus 245 kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i~~~sl~~~~~a~~t~W~IMaIlNPlQgfLnsLay 310 (405)
T PF02101_consen 245 KFFKIMLVFYICWLPNIINGSLLFYLEMQPDINGGSLKQVRNAALTTWFIMAILNPLQGFLNSLAY 310 (405)
T ss_pred HHHHHHHHHHHHhhhhhHhHHHHHHhhcccccccccccchhhHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3445667777788765542 11 11 12479999999999999999987
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.49 E-value=6.7 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=10.5
Q ss_pred HHHHHHhhHHHHHHHHHHhcC
Q psy4648 44 YAFIALNTLQGVFIFLAFTCT 64 (116)
Q Consensus 44 ylf~ilnslQG~fIFl~~~l~ 64 (116)
.+|.++-.+=-+++|+++|.+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555654
No 10
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=47.19 E-value=45 Score=25.46 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=35.2
Q ss_pred HHHHHHHHhhchhhhhhhhhhccC-----cchHHHHHH-----HHhhHHHHHHHHHHhcCHHHHHHHHHhh
Q psy4648 15 RLYVRLALIMGLTWSVGLFAGYID-----NEPLWYAFI-----ALNTLQGVFIFLAFTCTNKMIRNLFKSS 75 (116)
Q Consensus 15 ~~~~~L~~lmG~tWi~g~l~~~~~-----~~~~~ylf~-----ilnslQG~fIFl~~~l~~~V~~~~~k~~ 75 (116)
+.+++-+++-|+..+++.+.+... .....++.+ ..+++.|+.+ ..+|+|+|+.++|..
T Consensus 206 ~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~~~~~~~F~~~t~~w~~~h~~DG~i~---l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 206 IRFFIQSFIQDLLYLIDLIFYFFIPPLSSNRWWQFFCTTFSWVLVHALDGLIM---LIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcceeE---eEEcHHHHHHHHhcc
Confidence 455566777777777777655422 233333333 3466677654 446899999988764
No 11
>KOG4812|consensus
Probab=44.35 E-value=37 Score=27.01 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=21.8
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhcC-HHHHHHHHHh
Q psy4648 41 PLWYAFIALNTLQGVFIFLAFTCT-NKMIRNLFKS 74 (116)
Q Consensus 41 ~~~ylf~ilnslQG~fIFl~~~l~-~~V~~~~~k~ 74 (116)
++|++|+++ |++||+--.++ -+|||++++-
T Consensus 224 wLwwi~~vl----G~ll~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 224 WLWWIFLVL----GLLLFLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHHHH----HHHHHHHHHHhHHHHhhHHHHH
Confidence 466766665 88888877776 5888887654
No 12
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=44.13 E-value=87 Score=24.25 Aligned_cols=70 Identities=10% Similarity=0.151 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHhhchhhhhhhhhhc---------cCc-c---hHHHHHH---HHhhHHHHHHHHHHhc-CHHHHHHH
Q psy4648 9 STQRDFRLYVRLALIMGLTWSVGLFAGY---------IDN-E---PLWYAFI---ALNTLQGVFIFLAFTC-TNKMIRNL 71 (116)
Q Consensus 9 s~~~~~~~~~~L~~lmG~tWi~g~l~~~---------~~~-~---~~~ylf~---ilnslQG~fIFl~~~l-~~~V~~~~ 71 (116)
++++..|..+.+..+.-+.|.-..+... ... . ...++.. .+-.+-+.+=-++|++ +++.|++.
T Consensus 238 ~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~ 317 (335)
T PHA03087 238 KNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHK 317 (335)
T ss_pred hcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHH
Confidence 4455567777777777888866433211 111 1 1122222 2333345555566776 78888888
Q ss_pred HHhhccc
Q psy4648 72 FKSSSSI 78 (116)
Q Consensus 72 ~k~~~~~ 78 (116)
|+.++..
T Consensus 318 ~~~~~~~ 324 (335)
T PHA03087 318 KKSLKLM 324 (335)
T ss_pred HHHHHHH
Confidence 7776554
No 13
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=36.61 E-value=1.2e+02 Score=19.74 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHhhchhhhhhhhhhccCcchHHHHHHHHhhHHHHHHHHHHhcCHHHH
Q psy4648 20 LALIMGLTWSVGLFAGYIDNEPLWYAFIALNTLQGVFIFLAFTCTNKMI 68 (116)
Q Consensus 20 L~~lmG~tWi~g~l~~~~~~~~~~ylf~ilnslQG~fIFl~~~l~~~V~ 68 (116)
...+.++.|+.+++..............++.-+.|++.|+++.+--++.
T Consensus 21 ~li~i~l~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~l~~~i~~Ri~ 69 (90)
T PF14110_consen 21 GLILIVLSGLSGIFSGFMAGMGFSFGGGFLGLLLGPLGFLLGIILWRIM 69 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555665555543311112223444445555777787777644433
No 14
>KOG4219|consensus
Probab=32.10 E-value=1e+02 Score=26.35 Aligned_cols=69 Identities=7% Similarity=0.131 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhh----hhccCc----chHH--HHHHH-HhhHHHHHHHHHHhc-CHHHHHHHHHhhcc
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLF----AGYIDN----EPLW--YAFIA-LNTLQGVFIFLAFTC-TNKMIRNLFKSSSS 77 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l----~~~~~~----~~~~--ylf~i-lnslQG~fIFl~~~l-~~~V~~~~~k~~~~ 77 (116)
+++-.|+++...+.+++.|.-==+ ....+. .... |+..- +...--.+==++||+ |++-|..+++.|++
T Consensus 256 k~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~ 335 (423)
T KOG4219|consen 256 KKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRW 335 (423)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhe
Confidence 344456666677888888853211 111111 1122 22221 111112222255775 89999999999988
Q ss_pred c
Q psy4648 78 I 78 (116)
Q Consensus 78 ~ 78 (116)
+
T Consensus 336 c 336 (423)
T KOG4219|consen 336 C 336 (423)
T ss_pred e
Confidence 7
No 15
>PHA03235 DNA packaging protein UL33; Provisional
Probab=31.57 E-value=2.2e+02 Score=23.49 Aligned_cols=19 Identities=5% Similarity=0.263 Sum_probs=11.4
Q ss_pred HHHhc-CHHHHHHHHHhhcc
Q psy4648 59 LAFTC-TNKMIRNLFKSSSS 77 (116)
Q Consensus 59 l~~~l-~~~V~~~~~k~~~~ 77 (116)
++|++ +++.|+.+++.+++
T Consensus 304 iIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 304 ILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHHhhHHHHHHHHHHHhh
Confidence 44554 67777776665544
No 16
>PHA03240 envelope glycoprotein M; Provisional
Probab=30.78 E-value=92 Score=24.55 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=15.6
Q ss_pred HHHHHHHhcC--HHHHHHHHHh
Q psy4648 55 VFIFLAFTCT--NKMIRNLFKS 74 (116)
Q Consensus 55 ~fIFl~~~l~--~~V~~~~~k~ 74 (116)
+.|++++|++ +++++.|+.+
T Consensus 223 IiIIIL~cfKiPQKl~dKw~~~ 244 (258)
T PHA03240 223 IIVIILFFFKIPQKLFDKWDLH 244 (258)
T ss_pred HHHHHHHHHhccHHHHHHHhhh
Confidence 7888999986 6788777654
No 17
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=28.72 E-value=1.1e+02 Score=23.94 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHhhchhhhhhhhhhccCc-------chHHHHHHHHhhHHHHHHH
Q psy4648 21 ALIMGLTWSVGLFAGYIDN-------EPLWYAFIALNTLQGVFIF 58 (116)
Q Consensus 21 ~~lmG~tWi~g~l~~~~~~-------~~~~ylf~ilnslQG~fIF 58 (116)
..++|+.+++++++...-+ ..+||+-..+-.+=|+++.
T Consensus 119 ~~l~~~~~~~~ila~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~ 163 (232)
T TIGR00869 119 DYLIVILVVSIILALVLFPLWPRFMRRGSWYLSLGALGIIGGFFA 163 (232)
T ss_pred HHHHHHHHHHHHHHHhhcccChHHHhHhHHHHHHHHHHHHHHHHH
Confidence 4577888888888776443 2356877776666654443
No 18
>PRK14749 hypothetical protein; Provisional
Probab=28.56 E-value=70 Score=17.28 Aligned_cols=7 Identities=43% Similarity=1.184 Sum_probs=3.9
Q ss_pred hhhhhhh
Q psy4648 27 TWSVGLF 33 (116)
Q Consensus 27 tWi~g~l 33 (116)
+|++|+.
T Consensus 5 aWiLG~~ 11 (30)
T PRK14749 5 LWFVGIL 11 (30)
T ss_pred HHHHHHH
Confidence 5666554
No 19
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=27.61 E-value=71 Score=17.92 Aligned_cols=7 Identities=43% Similarity=1.303 Sum_probs=3.5
Q ss_pred hhhhhhh
Q psy4648 27 TWSVGLF 33 (116)
Q Consensus 27 tWi~g~l 33 (116)
.|++|++
T Consensus 5 aWiLG~l 11 (37)
T COG4890 5 AWILGLL 11 (37)
T ss_pred HHHHHHH
Confidence 4555543
No 20
>PF13994 PgaD: PgaD-like protein
Probab=26.01 E-value=2.2e+02 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=11.6
Q ss_pred cCCCCCcccccCCCCcC
Q psy4648 99 NSTKKSQIIHSDNHDML 115 (116)
Q Consensus 99 ~~~s~sq~i~~~~~~~~ 115 (116)
-...|..+++-||||=+
T Consensus 120 lr~~k~~~V~~d~~G~I 136 (138)
T PF13994_consen 120 LRQAKVLTVHHDDHGRI 136 (138)
T ss_pred HHhCCeEEEEeCCCCCc
Confidence 34467777888887744
No 21
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=25.60 E-value=1.9e+02 Score=18.54 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCHH
Q psy4648 42 LWYAFIALNTLQGVFIFLAFTCTNK 66 (116)
Q Consensus 42 ~~ylf~ilnslQG~fIFl~~~l~~~ 66 (116)
+.++-.++-++||+.=.++|.++++
T Consensus 48 l~~i~~~~~~~~G~VD~lvf~~~er 72 (76)
T PF11970_consen 48 LFCIAGFMQPSQGFVDCLVFTLRER 72 (76)
T ss_pred HHHHHHHHHHccCHHHhhheeeecc
Confidence 3466667899999999999998653
No 22
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.74 E-value=90 Score=16.86 Aligned_cols=7 Identities=29% Similarity=1.051 Sum_probs=3.7
Q ss_pred hhhhhhh
Q psy4648 27 TWSVGLF 33 (116)
Q Consensus 27 tWi~g~l 33 (116)
+|++|+.
T Consensus 5 aWilG~~ 11 (30)
T TIGR02106 5 AWILGTL 11 (30)
T ss_pred HHHHHHH
Confidence 5555544
No 23
>PHA03351 tegument protein UL16; Provisional
Probab=23.63 E-value=27 Score=26.54 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=12.2
Q ss_pred HHhhchhhhhhhhhhc
Q psy4648 21 ALIMGLTWSVGLFAGY 36 (116)
Q Consensus 21 ~~lmG~tWi~g~l~~~ 36 (116)
.|+||+.|+|.++...
T Consensus 8 vpmmgi~w~~fvlcls 23 (235)
T PHA03351 8 VPMMGIAWIFFVLCLS 23 (235)
T ss_pred Ccchhhhhhhheeecc
Confidence 4789999998776543
No 24
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=22.53 E-value=1.1e+02 Score=16.27 Aligned_cols=7 Identities=29% Similarity=1.198 Sum_probs=3.8
Q ss_pred hhhhhhh
Q psy4648 27 TWSVGLF 33 (116)
Q Consensus 27 tWi~g~l 33 (116)
+|++|+.
T Consensus 5 aWilG~~ 11 (28)
T PF08173_consen 5 AWILGVL 11 (28)
T ss_pred HHHHHHH
Confidence 5555554
No 25
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.15 E-value=69 Score=16.45 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=9.7
Q ss_pred HHHHHHHHhhchhhh
Q psy4648 15 RLYVRLALIMGLTWS 29 (116)
Q Consensus 15 ~~~~~L~~lmG~tWi 29 (116)
.+++.|+++.|.+|.
T Consensus 10 vVLFILLiIvG~s~~ 24 (24)
T PF09680_consen 10 VVLFILLIIVGASCF 24 (24)
T ss_pred HHHHHHHHHhcceeC
Confidence 345566777787773
No 26
>PHA03105 EEV glycoprotein; Provisional
Probab=20.58 E-value=1.5e+02 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHh
Q psy4648 51 TLQGVFIFLAFTCTNKMIRNLFKS 74 (116)
Q Consensus 51 slQG~fIFl~~~l~~~V~~~~~k~ 74 (116)
++=-++.++++++++.+.+.++|+
T Consensus 14 SfiiLi~Yll~i~K~~iKKflkkk 37 (188)
T PHA03105 14 SFIVLILYIFFICKNTIKKFLKKK 37 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444456677777888888887644
Done!