Query psy4648
Match_columns 116
No_of_seqs 127 out of 836
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:09:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks9_A Substance-P receptor; w 94.8 0.5 1.7E-05 35.1 11.0 68 12-79 245-324 (364)
2 1u19_A Rhodopsin; G protein-co 92.6 1.2 4.1E-05 32.5 9.6 36 44-79 290-326 (349)
3 3pbl_A D(3) dopamine receptor, 92.1 1.1 3.7E-05 34.5 9.2 70 10-79 396-474 (481)
4 3rze_A Histamine H1 receptor, 92.0 0.88 3E-05 34.6 8.4 71 10-80 368-446 (452)
5 3eml_A Human adenosine A2A rec 91.7 1.2 4E-05 34.2 8.9 70 11-80 391-470 (488)
6 3uon_A Human M2 muscarinic ace 91.0 0.59 2E-05 35.8 6.5 71 10-80 383-461 (467)
7 4eiy_A Adenosine receptor A2A/ 90.5 1.6 5.3E-05 33.2 8.5 67 13-79 352-428 (447)
8 3sn6_R Lysozyme, beta-2 adrene 90.3 1.2 4.2E-05 35.2 8.0 68 11-78 418-492 (514)
9 4dkl_A MU-type opioid receptor 89.8 1.4 4.9E-05 33.5 7.8 68 9-76 377-455 (464)
10 2z73_A Rhodopsin; visual pigme 89.7 0.96 3.3E-05 34.9 6.8 30 48-77 302-332 (448)
11 2rh1_A Beta-2-adrenergic recep 87.5 1.8 6E-05 34.2 7.1 66 10-78 403-478 (500)
12 4amj_A Beta-1 adrenergic recep 86.9 2.4 8.3E-05 30.2 7.0 68 12-79 229-303 (315)
13 4ea3_A Fusion protein of nocic 81.6 3.3 0.00011 31.8 6.1 65 14-78 336-411 (434)
14 3vw7_A Proteinase-activated re 77.7 1.7 5.8E-05 33.4 3.3 69 12-80 387-468 (484)
15 3odu_A C-X-C chemokine recepto 71.3 1.9 6.4E-05 33.3 2.0 68 11-78 409-494 (502)
16 3v2y_A Sphingosine 1-phosphate 68.0 9.2 0.00031 30.3 5.5 66 10-78 416-494 (520)
17 4grv_A Neurotensin receptor ty 63.1 3.2 0.00011 33.0 1.9 69 10-81 404-491 (510)
18 2lnl_A C-X-C chemokine recepto 59.8 14 0.00048 26.4 4.8 22 56-77 272-294 (296)
19 1afo_A Glycophorin A; integral 45.1 29 0.00099 19.2 3.3 25 40-64 11-35 (40)
No 1
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=94.76 E-value=0.5 Score=35.10 Aligned_cols=68 Identities=7% Similarity=0.161 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhhc----c-Cc------chHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccC
Q psy4648 12 RDFRLYVRLALIMGLTWSVGLFAGY----I-DN------EPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSIN 79 (116)
Q Consensus 12 ~~~~~~~~L~~lmG~tWi~g~l~~~----~-~~------~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~ 79 (116)
+-.+..+.+..+.-+.|+.-.+... . +. ..+..+...+..+...+=.++|++ +++.|+++++.+++..
T Consensus 245 k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~ 324 (364)
T 2ks9_A 245 KVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCP 324 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence 3344555555666677765433221 1 11 112223333445556666677776 8999999999887653
No 2
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=92.58 E-value=1.2 Score=32.52 Aligned_cols=36 Identities=3% Similarity=-0.021 Sum_probs=23.4
Q ss_pred HHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccC
Q psy4648 44 YAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSIN 79 (116)
Q Consensus 44 ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~ 79 (116)
.+...+..+...+=.++|++ +++.|+++++.+.|..
T Consensus 290 ~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~ 326 (349)
T 1u19_A 290 TIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK 326 (349)
T ss_dssp HHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccC
Confidence 33334444455555566775 7999999999886543
No 3
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=92.12 E-value=1.1 Score=34.52 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhhc----c-C---cchHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccC
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLFAGY----I-D---NEPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSIN 79 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l~~~----~-~---~~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~ 79 (116)
.++-.++.+.+..++-+.|+--.+... . . ...+..+...+..+...+=.++|++ +++.|+++++.+.|..
T Consensus 396 ~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~ 474 (481)
T 3pbl_A 396 EKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGR 474 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC--
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhccC
Confidence 445556666667777777876554332 1 1 1223344445556667777788886 8999999999987654
No 4
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=91.96 E-value=0.88 Score=34.61 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhhc-----cC--cchHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccCC
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLFAGY-----ID--NEPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSINR 80 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l~~~-----~~--~~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~~ 80 (116)
.++-.++.+.+..++-+.|+--.+... .. ...+.++...+..+...+=.++|++ +++.|+++++.+++..+
T Consensus 368 ~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~ 446 (452)
T 3rze_A 368 ERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSG 446 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhccc
Confidence 344455666666777777765444222 11 1234455666667777778888887 89999999999887654
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=91.70 E-value=1.2 Score=34.23 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhhhc----cC---c--chHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccCC
Q psy4648 11 QRDFRLYVRLALIMGLTWSVGLFAGY----ID---N--EPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSINR 80 (116)
Q Consensus 11 ~~~~~~~~~L~~lmG~tWi~g~l~~~----~~---~--~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~~ 80 (116)
++-.++.+.+..++-++|+--.+... .. . ..+.++...+..+...+=.++|++ +++.|+++++.+++...
T Consensus 391 ~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~ 470 (488)
T 3eml_A 391 VHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL 470 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhccc
Confidence 44445666666777777775544321 11 1 223455556677778888888986 89999999988877643
No 6
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=90.97 E-value=0.59 Score=35.78 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhhc----cCc---chHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccCC
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLFAGY----IDN---EPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSINR 80 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l~~~----~~~---~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~~ 80 (116)
.++-.++.+.+..++-+.|+--.+... ... ..+..+...+..+...+=.++|++ +++.|+++++.+.|...
T Consensus 383 ~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~ 461 (467)
T 3uon_A 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYK 461 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhhcc
Confidence 345566777777777777876544322 111 233444555666677777788886 89999999999876644
No 7
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=90.50 E-value=1.6 Score=33.15 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhchhhhhhhhhhc-----cC----cchHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhcccC
Q psy4648 13 DFRLYVRLALIMGLTWSVGLFAGY-----ID----NEPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSIN 79 (116)
Q Consensus 13 ~~~~~~~L~~lmG~tWi~g~l~~~-----~~----~~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~~ 79 (116)
-.++.+.+..++-+.|+--.+... .+ ...+.++...+..+...+=.++|++ +++.|+++++.+++..
T Consensus 352 ~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~ 428 (447)
T 4eiy_A 352 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHV 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHH
Confidence 345555566666777776544321 11 1223344555666667777778886 8999999998887764
No 8
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=90.31 E-value=1.2 Score=35.17 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhhhc----cCc---chHHHHHHHHhhHHHHHHHHHHhcCHHHHHHHHHhhccc
Q psy4648 11 QRDFRLYVRLALIMGLTWSVGLFAGY----IDN---EPLWYAFIALNTLQGVFIFLAFTCTNKMIRNLFKSSSSI 78 (116)
Q Consensus 11 ~~~~~~~~~L~~lmG~tWi~g~l~~~----~~~---~~~~ylf~ilnslQG~fIFl~~~l~~~V~~~~~k~~~~~ 78 (116)
++-.+..+.+..++-+.|+--.+... ... ..+..+...+..+...+=.++|+.+++.|+++++.+.+.
T Consensus 418 ~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~fR~~~~~~l~~~ 492 (514)
T 3sn6_R 418 HKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCLR 492 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHHHhCcC
Confidence 34445555555556666665433221 111 122333334444555555566677789999998887654
No 9
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=89.81 E-value=1.4 Score=33.47 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHhhchhhhhhhhhhcc-------Ccch---HHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhc
Q psy4648 9 STQRDFRLYVRLALIMGLTWSVGLFAGYI-------DNEP---LWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSS 76 (116)
Q Consensus 9 s~~~~~~~~~~L~~lmG~tWi~g~l~~~~-------~~~~---~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~ 76 (116)
..++-.++.+.+..++-+.|+-..+.... .... ++.+...+..+...+=.++|++ +++.|+++++.+.
T Consensus 377 ~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~ 455 (464)
T 4dkl_A 377 NLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCI 455 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhc
Confidence 33455666777777778888775443221 1111 2233334555666777788886 8999999988643
No 10
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=89.71 E-value=0.96 Score=34.85 Aligned_cols=30 Identities=3% Similarity=0.049 Sum_probs=19.7
Q ss_pred HHhhHHHHHHHHHHhc-CHHHHHHHHHhhcc
Q psy4648 48 ALNTLQGVFIFLAFTC-TNKMIRNLFKSSSS 77 (116)
Q Consensus 48 ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~ 77 (116)
++..+...+-.++|++ +++.|+++++.+++
T Consensus 302 ~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~ 332 (448)
T 2z73_A 302 MFAKASAIHNPMIYSVSHPKFREAISQTFPW 332 (448)
T ss_dssp HHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence 3333444455566665 89999999887753
No 11
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=87.47 E-value=1.8 Score=34.21 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhhc----cCc---chHHHHH---HHHhhHHHHHHHHHHhcCHHHHHHHHHhhccc
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLFAGY----IDN---EPLWYAF---IALNTLQGVFIFLAFTCTNKMIRNLFKSSSSI 78 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l~~~----~~~---~~~~ylf---~ilnslQG~fIFl~~~l~~~V~~~~~k~~~~~ 78 (116)
.++-.++.+.++.++-+.|+--++... ... ..+..++ ..+|+.=-.+| |+++++.|+++++.+.+.
T Consensus 403 e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~~~~~~~~~~~~~L~y~NS~iNPiI---Y~~n~~FR~af~~il~~~ 478 (500)
T 2rh1_A 403 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI---YCRSPDFRIAFQELLCLR 478 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHGGGTHHHH---GGGSHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhhcchh---hhccHHHHHHHHHHHhhh
Confidence 445556666677777888886554332 111 1222222 33455555555 456899999999988654
No 12
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=86.91 E-value=2.4 Score=30.20 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhhc----cCc---chHHHHHHHHhhHHHHHHHHHHhcCHHHHHHHHHhhcccC
Q psy4648 12 RDFRLYVRLALIMGLTWSVGLFAGY----IDN---EPLWYAFIALNTLQGVFIFLAFTCTNKMIRNLFKSSSSIN 79 (116)
Q Consensus 12 ~~~~~~~~L~~lmG~tWi~g~l~~~----~~~---~~~~ylf~ilnslQG~fIFl~~~l~~~V~~~~~k~~~~~~ 79 (116)
+-.+..+.+..+.-+.|+...+... ... .....+...+..+...+=.++|+.+++.|+++++.+.+..
T Consensus 229 k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~fR~~~~~~l~~~~ 303 (315)
T 4amj_A 229 KALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLLAFPR 303 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHGGGTHHHHGGGSHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhccccHHHHcCcHHHHHHHHHHhCCCC
Confidence 4445555556666777765444322 111 1222333333333334444455668999999999887653
No 13
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=81.55 E-value=3.3 Score=31.80 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhchhhhhhhhhhcc-----C--cch---HHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhccc
Q psy4648 14 FRLYVRLALIMGLTWSVGLFAGYI-----D--NEP---LWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSI 78 (116)
Q Consensus 14 ~~~~~~L~~lmG~tWi~g~l~~~~-----~--~~~---~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~ 78 (116)
.+..+.+..++-+.|+...+.... . ... +..+...+..+...+=.++|++ +++.|+++++.+.+.
T Consensus 336 ~~~~~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~~ 411 (434)
T 4ea3_A 336 TRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCAS 411 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 344455556666777654443221 1 111 1222223444556666777886 899999998876554
No 14
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=77.74 E-value=1.7 Score=33.41 Aligned_cols=69 Identities=9% Similarity=0.074 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhhc----c----Cc-c---hHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhccc
Q psy4648 12 RDFRLYVRLALIMGLTWSVGLFAGY----I----DN-E---PLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSSSI 78 (116)
Q Consensus 12 ~~~~~~~~L~~lmG~tWi~g~l~~~----~----~~-~---~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~~~ 78 (116)
+-.++.+.++.++-+.|+--.+... . .. . ...++...+..+-..+=.++|++ +++.|+++++.+.|.
T Consensus 387 r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~~ 466 (484)
T 3vw7_A 387 RALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCK 466 (484)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC-----------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhhc
Confidence 3444555555666667774443111 1 11 1 11233344455556666777886 789999998888766
Q ss_pred CC
Q psy4648 79 NR 80 (116)
Q Consensus 79 ~~ 80 (116)
+.
T Consensus 467 ~~ 468 (484)
T 3vw7_A 467 ES 468 (484)
T ss_dssp --
T ss_pred cC
Confidence 54
No 15
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=71.26 E-value=1.9 Score=33.32 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhhhcc----------C----cch---HHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHH
Q psy4648 11 QRDFRLYVRLALIMGLTWSVGLFAGYI----------D----NEP---LWYAFIALNTLQGVFIFLAFTC-TNKMIRNLF 72 (116)
Q Consensus 11 ~~~~~~~~~L~~lmG~tWi~g~l~~~~----------~----~~~---~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~ 72 (116)
++-.++.+.++.++-+.|+--.+.... . ... +.+++..+..+...+=.++|++ +++.|++++
T Consensus 409 ~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~ 488 (502)
T 3odu_A 409 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQ 488 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHH
Confidence 344455555666666788764442110 1 011 1134444566667777888997 788999998
Q ss_pred Hhhccc
Q psy4648 73 KSSSSI 78 (116)
Q Consensus 73 k~~~~~ 78 (116)
+.+++.
T Consensus 489 ~ll~~~ 494 (502)
T 3odu_A 489 HALTSG 494 (502)
T ss_dssp HHHSSC
T ss_pred HHhccC
Confidence 888665
No 16
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=68.01 E-value=9.2 Score=30.28 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhhc----cC-----c---chHHHHHHHHhhHHHHHHHHHHhc-CHHHHHHHHHhhc
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLFAGY----ID-----N---EPLWYAFIALNTLQGVFIFLAFTC-TNKMIRNLFKSSS 76 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l~~~----~~-----~---~~~~ylf~ilnslQG~fIFl~~~l-~~~V~~~~~k~~~ 76 (116)
+++-+++.+.+..++-+.|+--.+... .. . ..+..++..+|+.=-.+| |++ +++.|+++++.++
T Consensus 416 ~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPii---Y~~~~~~fr~~~~~~~~ 492 (520)
T 3v2y_A 416 NVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPII---YTLTNKEMRRAFIRIMG 492 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHH---HHHHCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHH
Confidence 445566666667777777775443221 11 1 112344455666655554 454 8999999998887
Q ss_pred cc
Q psy4648 77 SI 78 (116)
Q Consensus 77 ~~ 78 (116)
+.
T Consensus 493 ~~ 494 (520)
T 3v2y_A 493 RP 494 (520)
T ss_dssp SC
T ss_pred Hh
Confidence 65
No 17
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=63.10 E-value=3.2 Score=33.00 Aligned_cols=69 Identities=7% Similarity=0.151 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhh----cc-Cc---c----hHHHHHHH------HhhHHHHHHHHHHhc-CHHHHHH
Q psy4648 10 TQRDFRLYVRLALIMGLTWSVGLFAG----YI-DN---E----PLWYAFIA------LNTLQGVFIFLAFTC-TNKMIRN 70 (116)
Q Consensus 10 ~~~~~~~~~~L~~lmG~tWi~g~l~~----~~-~~---~----~~~ylf~i------lnslQG~fIFl~~~l-~~~V~~~ 70 (116)
.++-.++++.+..++-+.|+--++.. +. +. . ...+++.+ +||.=- -++|++ |++-|++
T Consensus 404 erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iN---PiIY~~~n~~FR~a 480 (510)
T 4grv_A 404 LRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAIN---PILYNLVSANFRQV 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCHHHHHH
Confidence 44556666667777778898643322 11 11 1 11122211 233333 345665 7788888
Q ss_pred HHHhhcccCCC
Q psy4648 71 LFKSSSSINRP 81 (116)
Q Consensus 71 ~~k~~~~~~~~ 81 (116)
+++-+.|.+.+
T Consensus 481 Fk~iL~C~C~~ 491 (510)
T 4grv_A 481 FLSTLACLCPG 491 (510)
T ss_dssp -----------
T ss_pred HHHHHhhcCCC
Confidence 88888777643
No 18
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=59.85 E-value=14 Score=26.35 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=16.4
Q ss_pred HHHHHHhc-CHHHHHHHHHhhcc
Q psy4648 56 FIFLAFTC-TNKMIRNLFKSSSS 77 (116)
Q Consensus 56 fIFl~~~l-~~~V~~~~~k~~~~ 77 (116)
+=-++|++ +++.|++++|-++|
T Consensus 272 ~NPiIY~~~~~~fR~~~~~ll~c 294 (296)
T 2lnl_A 272 LNPIIYAFIGQNFRHGFLKILAM 294 (296)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHhcC
Confidence 44456775 89999999988765
No 19
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=45.08 E-value=29 Score=19.16 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=20.9
Q ss_pred chHHHHHHHHhhHHHHHHHHHHhcC
Q psy4648 40 EPLWYAFIALNTLQGVFIFLAFTCT 64 (116)
Q Consensus 40 ~~~~ylf~ilnslQG~fIFl~~~l~ 64 (116)
.....+|++....=|..+|+.||.+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999964
Done!