RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4648
(116 letters)
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.010
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 19/61 (31%)
Query: 1 MGEITA--SSSTQRDFRLYVR--------LALIMGL-TWSVGL-----FAGYID---NEP 41
E+ S+ T+ + + +A IMG ++ G + G++D EP
Sbjct: 825 FAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSKTKEP 884
Query: 42 L 42
+
Sbjct: 885 V 885
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.21
Identities = 18/98 (18%), Positives = 25/98 (25%), Gaps = 44/98 (44%)
Query: 33 FAGYIDNEP-----LWYAFIA-----------------LNTLQGVF--IFL------AFT 62
FA D+EP L F+ LN F +L A
Sbjct: 48 FAA--DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 63 CT------------NKMIRNLFKSSSSINRPIRPASFS 88
++I+N + RP S S
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 26.1 bits (58), Expect = 3.7
Identities = 3/34 (8%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 28 WSVGLFAGYIDNEPLWYAFIALNTLQGVFIFLAF 61
+ + N L + +L + +++
Sbjct: 924 MRMPPWV----NIWLLGSICLSMSLHFLILYVDP 953
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 24.7 bits (54), Expect = 5.4
Identities = 2/25 (8%), Positives = 7/25 (28%)
Query: 59 LAFTCTNKMIRNLFKSSSSINRPIR 83
+ F+ T + + +
Sbjct: 23 IPFSITKMDVLQFLEGIPVDENAVH 47
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2;
multisubunit tethering factor, trapp, palmitate,
transport, lipoprotein; HET: PLM; 2.1A {Brachydanio
rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Length = 188
Score = 24.9 bits (54), Expect = 5.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 37 IDNEPLWYAFIALNTLQGVFIFLAFTC 63
I+ EPL A+I++ AFT
Sbjct: 118 IEKEPLINAYISVPKENSTLNCAAFTG 144
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 118
Score = 24.5 bits (53), Expect = 6.4
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 59 LAFTCTNKMIRNLFKSSSSINRPIR 83
L ++C+ + ++N + +
Sbjct: 25 LPWSCSIEDVQNFLSDCTIHDGVAG 49
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 25.2 bits (56), Expect = 7.3
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 20 LALIMGLTWSVGLFAGYIDNE 40
+ + VGLF Y +
Sbjct: 422 IVINTMEGKPVGLFVHYGKDP 442
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 24.9 bits (55), Expect = 8.5
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 19 RLALIMGLTWSVGLFAGYIDNE 40
+ + + +G+F+GY+DN
Sbjct: 402 DIGIRVKPIRPIGIFSGYVDNP 423
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.58.7.1
Length = 124
Score = 24.4 bits (53), Expect = 8.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 59 LAFTCTNKMIRNLFKSSSSINRPIR 83
L F NK + + FK + I
Sbjct: 33 LPFEAENKHVIDFFKKLDIVEDSIY 57
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding
factor, RNA binding domain, STRU genomics, joint center
for structural genomics, JCSG; NMR {Homo sapiens}
Length = 107
Score = 24.0 bits (52), Expect = 8.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 59 LAFTCTNKMIRNLFKSSSSINRPIR 83
L ++CT + + N F N
Sbjct: 19 LPWSCTMEDVLNFFSDCRIRNGENG 43
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 25.0 bits (55), Expect = 9.1
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 62 TCTNKMIRNLFKSSSSINRPIRPASFS 88
++ ++ LF + +R + A+F
Sbjct: 602 DSSDNVVTKLFNDPNIASRAKKGANFI 628
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 24.6 bits (54), Expect = 9.6
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 60 AFTCTNKMIRNLFKSSSSINRPIRPASFSCSNTDMSNNTNSTKK 103
F+ K + +FK ++ +N C+ KK
Sbjct: 215 CFSRKRKTLHAIFKRNAVLNMLEHNYKNWCTLNKQVPVNFPFKK 258
>3tix_B Chromo domain-containing protein 1; PIN, rossmann fold, SPOC,
alpha-helical hairpin, heterochrom silencing, RITS,
RNAI, argonaute; 2.90A {Schizosaccharomyces pombe}
Length = 458
Score = 24.7 bits (53), Expect = 9.9
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 52 LQGVFIFLAFTCTNKMIRNLFKSSSSINRP 81
L + L FT N + NL+ N P
Sbjct: 111 LGSNYTLLLFTEDNNALMNLYDCQGQSNSP 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.397
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,574,890
Number of extensions: 73995
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 21
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)