RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4648
         (116 letters)



>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
           protein particle complex 5 {Zebrafish (Brachydanio
           rerio) [TaxId: 7955]}
          Length = 168

 Score = 27.1 bits (60), Expect = 0.35
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 37  IDNEPLWYAFIALNTLQGVFIFLAFTC 63
           I+ EPL  A+I++          AFT 
Sbjct: 98  IEKEPLINAYISVPKENSTLNCAAFTG 124


>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1,
           TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score = 26.3 bits (57), Expect = 0.60
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query: 85  ASFSCSNTDMSNNTNSTKKSQIIHSDNHDM 114
           +S S  +  + N+ NS  +  + + +N D+
Sbjct: 2   SSGSSGSESICNSLNSKLEPTLENLENLDV 31


>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 86  SFSCSNTDMSNNTNSTKKSQIIHSDNHDM 114
           S +    D+   TNS  K Q++  D  + 
Sbjct: 37  SATLGLVDIVKGTNSYYKLQLLEDDKENR 65


>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
           {Azospirillum irakense [TaxId: 34011]}
          Length = 408

 Score = 25.0 bits (54), Expect = 2.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 38  DNEPLWYAFIALNTLQGVF 56
             +PLW  F +L+  + VF
Sbjct: 347 GAKPLWSRFYSLDGNKPVF 365


>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 143

 Score = 24.2 bits (52), Expect = 3.9
 Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 9/74 (12%)

Query: 17  YVRLALIMGLTWSVGLFAGYIDNEPLWYAFIALNTLQGVFIFLAFTCTN--KMIRNLFKS 74
            V   +  G         G          F A      ++     T     +  R L K 
Sbjct: 77  SVEAYVSFGWEKYSHAHVG-------MSGFGASAPAGVLYKKFGITVEEVVRTGRELAKR 129

Query: 75  SSSINRPIRPASFS 88
                 P++ +SFS
Sbjct: 130 FPDGTAPLKNSSFS 143


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 24.3 bits (52), Expect = 4.3
 Identities = 9/57 (15%), Positives = 21/57 (36%)

Query: 50  NTLQGVFIFLAFTCTNKMIRNLFKSSSSINRPIRPASFSCSNTDMSNNTNSTKKSQI 106
           + L      L    ++K + +L+K    I    + A  + S+   ++ T       +
Sbjct: 524 DPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTV 580


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 24.3 bits (52), Expect = 5.3
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 33  FAGYIDNEPLWYAFIALNTLQGVFIFLAFTCTNKMIRNLFKSSSSINRPIRPASFS 88
           +AG +  E   +     + LQ          ++ ++  LF   +  +R  + A+F 
Sbjct: 526 YAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFI 581


>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 278

 Score = 23.3 bits (49), Expect = 9.1
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 56  FIFLAFTCTNKMIRNLFKSSSSINRPIRPASFSCSNTDMSNNTNSTKKSQI 106
            + + F   NK +   FKSS+      +     CS  ++    + +   +I
Sbjct: 191 LVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIADKI 241


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,895
Number of extensions: 14044
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 13
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)