BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4649
(755 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/619 (53%), Positives = 428/619 (69%), Gaps = 27/619 (4%)
Query: 9 SNSHQNRWVFESAWEVANKVGGIYTVIRSKAFVSSEELGNQYVLLGPYKEQSARTEVEEV 68
S QN +FE+A EVAN+VGGIY+V++SKA ++ + + Y L+GP + + + EV+ +
Sbjct: 22 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDIL 81
Query: 69 EFMNGS-------PLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEYKQE 121
++ P+Q A+ M G G WL++G P++ILFD+ S +E+K +
Sbjct: 82 DWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGD 141
Query: 122 LWSTCSLGVPHLDIEANDAIILGHMVATFIAEFEKVAHNEFGPPKIITHFHEWQAGIGLI 181
LWS + P D E NDAI+LG+ VA F+ E VAH + I+ HFHEW AG+ L
Sbjct: 142 LWSLVGIPSPENDFETNDAILLGYTVAWFLGE---VAHLD-SQHAIVAHFHEWLAGVALP 197
Query: 182 ALRTRKVPVATVFTTHATLLGRYLCA-GNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAA 240
R R++ V T+FTTHATLLGRYLCA G+ DFYN L + DVD EAGR IYHRYC+ERAA
Sbjct: 198 LCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAA 257
Query: 241 SHLAHVFTTVSEITGYEAEHLLKRKPEVITPNGLNVVKFSAIHEFQNLHARAKEKINEFV 300
+H A VFTTVS+IT +EAEHLLKRKP+ I PNGLNV+KF A HEFQNLHA KEKIN+FV
Sbjct: 258 AHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFV 317
Query: 301 RGHFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARLNHYLKAANSDVTVVAFLIF 360
RGHF+G +DF+LD TLYFF AGRYE+ NKGAD+FIE+LARLN+ LK + S TVVAF++
Sbjct: 318 RGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVM 377
Query: 361 PTKTNNFNVESLRGHAVTKSLRDTINEIQGKMSNMSKRIYE-------TCLMGRMPTE-D 412
P K N+F VE+L+G A ++L +T++E+ +++ KRI++ L +PT+
Sbjct: 378 PAKNNSFTVEALKGQAEVRALENTVHEV---TTSIGKRIFDHAIRYPHNGLTTELPTDLG 434
Query: 413 EFFTKEDKTRIKRCLYALQR--YSLPPVTTHNVIDDWNDPVLCAFRRCHLFNSVHDRVKV 470
E DK +KR + AL+R LPP+ THN++DD ND +L R+ LFNS DRVK+
Sbjct: 435 ELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKM 494
Query: 471 IFHPEFLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG 530
IFHPEFL++ NP+ GLDY+EFVRGCHLGVFPSYYEPWGYTPAECTVMG+PSITTN+SGFG
Sbjct: 495 IFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFG 554
Query: 531 CFMEEHIA--DPTSYGIYIVDRRNIALEESIRQLAQYMYDFTTLXXXXXXXXXXXTERLS 588
+ME+ I YGIYIVDRR A +ES+ QL YM +F TERLS
Sbjct: 555 SYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTAAQAINQRNRTERLS 614
Query: 589 DLLDWRNLGVYYKQARKLA 607
DLLDW+ +G+ Y +AR+LA
Sbjct: 615 DLLDWKRMGLEYVKARQLA 633
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/619 (53%), Positives = 427/619 (68%), Gaps = 27/619 (4%)
Query: 9 SNSHQNRWVFESAWEVANKVGGIYTVIRSKAFVSSEELGNQYVLLGPYKEQSARTEVEEV 68
S QN +FE+A EVAN+VGGIY+V++SKA ++ + + Y L+GP + + + EV+ +
Sbjct: 22 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDIL 81
Query: 69 EFMNGS-------PLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEYKQE 121
++ P+Q A+ M G G WL++G P++ILFD+ S +E+K +
Sbjct: 82 DWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGD 141
Query: 122 LWSTCSLGVPHLDIEANDAIILGHMVATFIAEFEKVAHNEFGPPKIITHFHEWQAGIGLI 181
LWS + P D E NDAI+LG+ VA F+ E VAH + I+ HFHEW AG+ L
Sbjct: 142 LWSLVGIPSPENDFETNDAILLGYTVAWFLGE---VAHLD-SQHAIVAHFHEWLAGVALP 197
Query: 182 ALRTRKVPVATVFTTHATLLGRYLCA-GNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAA 240
R R++ V T+FTTHATLLGRYLCA G+ DFYN L + DVD EAGR IYHRYC+ERAA
Sbjct: 198 LCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAA 257
Query: 241 SHLAHVFTTVSEITGYEAEHLLKRKPEVITPNGLNVVKFSAIHEFQNLHARAKEKINEFV 300
+H A VFTTVS+IT +EAEHLLKRKP+ I PNGLNV+KF A HEFQNLHA KEKIN+FV
Sbjct: 258 AHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFV 317
Query: 301 RGHFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARLNHYLKAANSDVTVVAFLIF 360
RGHF+G +DF+LD TLYFF AGRYE+ NKGAD+FIE+LARLN+ LK + S TVVAF++
Sbjct: 318 RGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVM 377
Query: 361 PTKTNNFNVESLRGHAVTKSLRDTINEIQGKMSNMSKRIYE-------TCLMGRMPTE-D 412
P K N+F VE+L+G A ++L +T++E+ +++ KRI++ L +PT+
Sbjct: 378 PAKNNSFTVEALKGQAEVRALENTVHEV---TTSIGKRIFDHAIRYPHNGLTTELPTDLG 434
Query: 413 EFFTKEDKTRIKRCLYALQR--YSLPPVTTHNVIDDWNDPVLCAFRRCHLFNSVHDRVKV 470
E DK +KR + AL+R LPP+ THN++DD ND +L R+ LFNS DRVK+
Sbjct: 435 ELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKM 494
Query: 471 IFHPEFLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG 530
IFHPEFL++ NP+ GLDY+EFVRGCHLGVFPSYYEPWGYTPAECTVMG+PSITTN+SGFG
Sbjct: 495 IFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFG 554
Query: 531 CFMEEHIA--DPTSYGIYIVDRRNIALEESIRQLAQYMYDFTTLXXXXXXXXXXXTERLS 588
+ME+ I YGIYIVDRR A +ES+ QL YM +F TE LS
Sbjct: 555 SYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS 614
Query: 589 DLLDWRNLGVYYKQARKLA 607
DLLDW+ +G+ Y +AR+LA
Sbjct: 615 DLLDWKRMGLEYVKARQLA 633
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 483 LFGLDYEEFVRGCHL------GVFP--SYYEPWGYTPAECTVMGIPSITTNLSGFGCFME 534
+F L+ ++ + GC+ VF S+YEP+G P E G+P++ T G
Sbjct: 339 MFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGG-----P 393
Query: 535 EHIADPTSYGIYI 547
I D YG+ +
Sbjct: 394 AEILDGGKYGVLV 406
>pdb|2QBU|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Cbil
pdb|2QBU|B Chain B, Crystal Structure Of Methanothermobacter
Thermautotrophicus Cbil
Length = 232
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 146 MVATFIAEFEKVAHNEFGPPKIITHFHEWQAGIGLIALRTRKVPVATVFTTHATLLGRYL 205
MVA + + VA G P I + F Q I + +T VP T FT A GR L
Sbjct: 86 MVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTL 145
Query: 206 CAGN 209
G+
Sbjct: 146 VEGD 149
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2
Length = 323
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 10 NSHQNR-WVFESAWEVANKVGGIYTVIRSKAFVSSEELGNQYVLLGPYKEQSARTEVEE- 67
NS Q R W F S ++A R KA + + L N V L P++E + E+
Sbjct: 4 NSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKR 63
Query: 68 -VEFMN----GSPLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEY 118
+EF + P + V + + ++ N +++ +P+II+ A K+DE+
Sbjct: 64 LLEFCSVFKPAMPRSV-VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF 118
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating
Kinase
Length = 333
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 10 NSHQNR-WVFESAWEVANKVGGIYTVIRSKAFVSSEELGNQYVLLGPYKEQSARTEVEE- 67
NS Q R W F S ++A R KA + + L N V L P++E + E+
Sbjct: 14 NSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKR 73
Query: 68 -VEFMN----GSPLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEY 118
+EF + P + V + + ++ N +++ +P+II+ A K+DE+
Sbjct: 74 LLEFCSVFKPAMPRSV-VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF 128
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 423 IKRCLYALQRYSLPPVTTHNVIDDWNDPVLCAFRRCHLFNSVHDRVKVIFHPEFLSSTNP 482
+ R + AL SLP HN + + + F ++ +++ V + F S N
Sbjct: 211 VDRSIEALA--SLPESLRHNTL-----LFVVGQDKPRKFEALAEKLGVRSNVHFFSGRN- 262
Query: 483 LFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEH-----I 537
D E + L + P+Y E G E G+P +TT + G+ ++ + I
Sbjct: 263 ----DVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVI 318
Query: 538 ADPTS 542
A+P S
Sbjct: 319 AEPFS 323
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 168 ITHFHEWQAGIGLIALRTRKVPVATVFTTH 197
+ H H+W AG+ L R P +VFT H
Sbjct: 132 VVHAHDWHAGLAPAYLAARGRPAKSVFTVH 161
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 168 ITHFHEWQAGIGLIALRTRKVPVATVFTTH 197
+ H H+W AG+ L R P +VFT H
Sbjct: 132 VVHAHDWHAGLAPAYLAARGRPAKSVFTVH 161
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 168 ITHFHEWQAGIGLIALRTRKVPVATVFTTH 197
+ H H+W AG+ L R P +VFT H
Sbjct: 132 VVHAHDWHAGLAPAYLAARGRPAKSVFTVH 161
>pdb|1JOT|A Chain A, Structure Of The Lectin Mpa Complexed With T-Antigen
Disaccharide
pdb|3LLY|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
pdb|3LLZ|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With Gal-Beta-1,3-Galnac
pdb|3LM1|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|C Chain C, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|E Chain E, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|G Chain G, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|I Chain I, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|K Chain K, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|M Chain M, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|O Chain O, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
Length = 133
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 23 EVANKVGGI--YTVIRSKAFVSSEELGNQYVLLGPYKEQSARTEVEEVEFMNGSPLQIAV 80
EV+ VG + YTVIRS F ++++ GPY NG+P + +
Sbjct: 67 EVSGYVGKVEGYTVIRSLTFKTNKQT------YGPYG------------VTNGTPFSLPI 108
Query: 81 DKMREHGFKLHVGNWL 96
+ GFK +G WL
Sbjct: 109 ENGLIVGFKGSIGYWL 124
>pdb|3MYD|A Chain A, Structure Of The Cytoplasmic Domain Of Flha From
Helicobacter Pylori
Length = 365
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 339 ARLNHYLKAA-NSDVTVVAFLIFPTKTNNFNVESLRGHAVTKSLRDTINEIQGKMSNMSK 397
ARL+ + A S+ + FL F T + F + LR + +KSL + E+Q + +S+
Sbjct: 247 ARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGELQKLIEGVSE 306
Query: 398 RIYETCLMGRMPT 410
+ G P
Sbjct: 307 EAMKVLQKGIAPV 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,342,621
Number of Sequences: 62578
Number of extensions: 876997
Number of successful extensions: 1738
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1719
Number of HSP's gapped (non-prelim): 31
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)