RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4649
(755 letters)
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 738 bits (1905), Expect = 0.0
Identities = 343/717 (47%), Positives = 448/717 (62%), Gaps = 77/717 (10%)
Query: 13 QNRWVFESAWEVANKVGGIYTVIRSKAFVSSEELGNQYVLLGPYKEQSARTEVEEVEFMN 72
QN +FE+A EVAN+VGGIY+V++SKA ++ + + Y L+GP + + + EV+ +++
Sbjct: 26 QNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKK 85
Query: 73 G-------SPLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEYKQELWST 125
P+Q A+ M G G WL++G P++ILFD+ S +E+K +LWS
Sbjct: 86 PEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSL 145
Query: 126 CSLGVPHLDIEANDAIILGHMVATFIAEFEKVAHNEFGPPKIITHFHEWQAGIGLIALRT 185
+ P D E NDAI+LG+ VA F+ E + I+ HFHEW AG+ L R
Sbjct: 146 VGIPSPENDFETNDAILLGYTVAWFLGEV----AHLDSQHAIVAHFHEWLAGVALPLCRK 201
Query: 186 RKVPVATVFTTHATLLGRYLCA-GNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLA 244
R++ V T+FTTHATLLGRYLCA G+ DFYN L + DVD EAGR IYHRYC+ERAA+H A
Sbjct: 202 RRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSA 261
Query: 245 HVFTTVSEITGYEAEHLLKRKPEVITPNGLNVVKFSAIHEFQNLHARAKEKINEFVRGHF 304
VFTTVS+IT +EAEHLLKRKP+ I PNGLNV+KF A HEFQNLHA KEKIN+FVRGHF
Sbjct: 262 DVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHF 321
Query: 305 YGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARLNHYLKAANSDVTVVAFLIFPTKT 364
+G +DF+LD TLYFF AGRYE+ NKGAD+FIE+LARLN+ LK + S TVVAF++ P K
Sbjct: 322 HGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKN 381
Query: 365 NNFNVESLRGHAVTKSLRDTINEIQGKMSNMSKRIYETCL-------MGRMPTE-DEFFT 416
N+F VE+L+G A ++L +T++E+ + RI++ + +PT+ E
Sbjct: 382 NSFTVEALKGQAEVRALENTVHEVTTSIGK---RIFDHAIRYPHNGLTTELPTDLGELLK 438
Query: 417 KEDKTRIKRCLYALQRY--SLPPVTTHNVIDDWNDPVLCAFRRCHLFNSVHDRVKVIFHP 474
DK +KR + AL+R LPP+ THN++DD ND +L R+ LFNS DRVK+IFHP
Sbjct: 439 SSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHP 498
Query: 475 EFLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME 534
EFL++ NP+ GLDY+EFVRGCHLGVFPSYYEPWGYTPAECTVMG+PSITTN+SGFG +ME
Sbjct: 499 EFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYME 558
Query: 535 EHIADPT--SYGIYIVDRRNIALEESIRQLAQYMYDFTTLNRRQRIIQRNRTERLSDLLD 592
+ I YGIYIVDRR A +ES+ QL YM +F RRQRI QRN TE LSDLLD
Sbjct: 559 DLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLD 618
Query: 593 WRNLGVYYKQARKLAQYMYDFTTLNRRQRIIQRNRTERLSDLLDWRNLGVYYKQARNKAL 652
W+ +G+ Y +AR+L AL
Sbjct: 619 WKRMGLEYVKARQL--------------------------------------------AL 634
Query: 653 KAVFPDLEARNKALKAVFPDLEVEDDDTDSGYGGRFSYPRPYSEPPSPSSSRATTPV 709
+ +PD + + + G + RP S P SP R+ + V
Sbjct: 635 RRGYPDQFRELVG------EELNDSNMDALAGGKKLKVARPLSVPGSPRDLRSNSTV 685
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 3e-08
Identities = 103/655 (15%), Positives = 205/655 (31%), Gaps = 208/655 (31%)
Query: 123 WSTCSLGVPHLDIEANDAIILGHMVAT---FIA-----EFEKV---------AHNEFG-P 164
+ST L + H +E +L V T FIA +F K+ A +E P
Sbjct: 4 YSTRPLTLSHGSLEHV---LL---VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 165 PKIITHFHEWQAGIGLIALRTRKVPVATVFTTHATLLGRYLCAGNTDFYNNLSTFDVDFE 224
+++ F +G ++ V +L L + L D+
Sbjct: 58 AELVGKF------LGYVSSLVEPSKVGQ----FDQVLNLCLTEFENCY---LEGNDI--- 101
Query: 225 AGRRQIYHRYCMERAASHLAHVFTTVSEITG-----YEAEHLLKRKPEVITPNGL----- 274
H AA L TT+ + A + KR + + + L
Sbjct: 102 -------HAL----AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 275 -NVVKFSAI-----------HEFQNLHARAKEKINEFVRGHFYGHYDFNLDKTLYFFTAG 322
+ AI E ++L+ + + ++ +TL
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK---------FSAETLSELIRT 201
Query: 323 RYEFTN---KGADV--FIESLARL--NHYLKAANSDVTVVAF-LIFPTKTNNFNVESLRG 374
+ +G ++ ++E+ + YL + ++ LI + ++ V + +
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-----PISCPLIGVIQLAHYVV-TAKL 255
Query: 375 HAVT-KSLRDTINEIQGKMSNMSKRIYETCLMGRMPTEDEFFTKEDKTRIK-------RC 426
T LR ++G + S+ + + + + FF K I RC
Sbjct: 256 LGFTPGELRS---YLKG-ATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFIGVRC 310
Query: 427 LYALQRYSLPPVTTHNVIDDWND---PVLCAFRRCHLFNSVHD--RVKVIFHPEFLSSTN 481
A SLPP + +++ P+L S+ + + +V ++++ TN
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPML----------SISNLTQEQVQ---DYVNKTN 357
Query: 482 PLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIADPT 541
L + V + + V G P +L G + + A
Sbjct: 358 S--HLPAGKQV---EISLVNG--------AKNLVVSGPPQ---SLYGLNLTLRKAKAPSG 401
Query: 542 SYGIYIVDRRNIALEESIRQLA--------------QYMYDFTTLNRRQRIIQRNRTERL 587
+D+ I E R+L + + I + + +
Sbjct: 402 ------LDQSRIPFSE--RKLKFSNRFLPVASPFHSHLLVPAS-----DLINK----DLV 444
Query: 588 SDLLDWRNLGVYYKQARKLAQYMYDFTTLNRRQRIIQRNRTERLSDLL-----DWRNLGV 642
+ + + A+ + +YD R++ + +ER+ D + W
Sbjct: 445 KNNVSFN--------AKDIQIPVYDTFD-GSDLRVLSGSISERIVDCIIRLPVKWE---- 491
Query: 643 YYKQARNKALKAV-F-P-------DLEARNKA---LKAVFP-DLEVEDDDTDSGY 684
+ KA + F P L RNK ++ + L++ DD D G+
Sbjct: 492 --TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD-DYGF 543
Score = 50.0 bits (119), Expect = 3e-06
Identities = 83/506 (16%), Positives = 132/506 (26%), Gaps = 175/506 (34%)
Query: 305 YGH--YDFNLDKTLYF--------FTAGRYEFTNKGAD-----VFIESLARLNHYL---- 345
+G + + +F F E T A E + + Y+
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 346 -KAANSDVTVVAFLIFPTKTNNFNVESLRG---HAVTKSLRDTINEIQGKMSNMSKRIYE 401
+ V L F L G HA+ L + K + K
Sbjct: 73 EPSKVGQFDQVLNLCL----TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 402 TCLMGRMPTEDE----FFTKEDKTRIKRCLYAL---QRYSLPPVTTHNVIDDWNDPVLCA 454
+M + P + + F + + L A+ Q DD+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQ--LVAIFGGQ----------GNTDDY------- 169
Query: 455 FR--RCHLFNSVHDRVKVIFHPEFLSSTNPLFGL-----DYEE-FVRGCHLGVFPSYYEP 506
F R L+ + H V + S L L D E+ F +G ++
Sbjct: 170 FEELR-DLYQTYHVLVGDLIK----FSAETLSELIRTTLDAEKVFTQGLNI-------LE 217
Query: 507 WGYTPAECTVMGIPSITTNLSGFGCFMEEHIAD-PTSY-GIYIVDRRNIALEESIRQLAQ 564
W P+ P ++++ P S I ++ QLA
Sbjct: 218 WLENPSN-----TPD------------KDYLLSIPISCPLIGVI------------QLAH 248
Query: 565 YM-----YDFTTLNRRQRIIQRNRTERLSDLL---------DWRNLGVYYKQARKLAQYM 610
Y+ FT R + + T L+ W + ++ RK +
Sbjct: 249 YVVTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIAETDSWES---FFVSVRKAITVL 303
Query: 611 YDFTTLNRRQRIIQRN--RTERLSDLLDWRN------LGVYYKQARNKALKAVFPDLEAR 662
+ F + R L D L+ L + N + V +
Sbjct: 304 F-FIGV-RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-----SNLTQEQVQDYVNKT 356
Query: 663 NKAL---KAVF------PDLEVEDDDTDSG-----YGGRFSYPRPYSEPPSPSSSRATTP 708
N L K V V SG YG + R P SR
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVV-----SGPPQSLYGLNLTL-RKAKAPSGLDQSR---- 406
Query: 709 VPSQRNSDDEDSVDDESERAPVPSQR 734
+P SER S R
Sbjct: 407 IPF-------------SERKLKFSNR 419
Score = 37.0 bits (85), Expect = 0.031
Identities = 50/261 (19%), Positives = 86/261 (32%), Gaps = 99/261 (37%)
Query: 214 NNLSTFDVDF--EAGRRQIYHRYCMERAASHLAHVFTTVSEITGYEAEHLLKRKPEVIT- 270
NN + F E G+R I Y A +F T+ + + E + K E T
Sbjct: 1667 NNPVNLTIHFGGEKGKR-IRENY--------SAMIFETIVD-GKLKTEKIFKEINEHSTS 1716
Query: 271 -----PNG-LNVVKFS--AI--HE---FQNLHARAKEKINEFVRGHFYGHYDFNLDKTLY 317
G L+ +F+ A+ E F++L ++ + GH G Y
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY--------- 1767
Query: 318 FFTA--GRYEFTNKGADVF-IESLARLNHY-----------LKAANSDVTVVAFLIFPT- 362
A ADV IESL + Y + S+ ++A I P
Sbjct: 1768 --AALASL-------ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA--INPGR 1816
Query: 363 -------------------KTN------NFNVESLR----GH--AVTKSLRDTINEIQGK 391
+T N+NVE+ + G A+ + + +N I+ +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT-VTNVLNFIKLQ 1875
Query: 392 MSNMSKRIYETCLMGRMPTED 412
++ + L + E+
Sbjct: 1876 KIDIIE------LQKSLSLEE 1890
Score = 36.2 bits (83), Expect = 0.055
Identities = 32/214 (14%), Positives = 56/214 (26%), Gaps = 83/214 (38%)
Query: 37 SKAFVSSEELGN---QYVLLGPYK------------------EQ-----SARTEVEEVEF 70
+ +S L N V+ GP + +Q S R F
Sbjct: 364 KQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 71 MNGSPLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEYKQEL-WSTCSLG 129
L +A F H + LV + I D K + ++ +
Sbjct: 421 -----LPVASP------F--H-SHLLVPASDLI----------NKDLVKNNVSFNAKDIQ 456
Query: 130 VP--H----LDIEANDAIILG---HMVATFIAEFEKVAHN------EFGPPKIITHFHEW 174
+P D+ I + ++E +FGP
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA------- 509
Query: 175 QAGIGLIALR------TRKVPVATVFTTHATLLG 202
+G+G++ R R + T+ G
Sbjct: 510 -SGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 55.6 bits (133), Expect = 3e-08
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 12/160 (7%)
Query: 441 HNVIDDWNDPVLCAFRRCHLFNSVHDRVKVIFHPEFLSSTNPLFGLDYEEFVRGCHLGVF 500
H D + L + N K++ + L+ + C + V
Sbjct: 226 HESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDE------RVDMMYNACDVIVN 279
Query: 501 PSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIADPTSYGIYIVDRRNIAL----- 555
S E +G AE V+G P I + + G + +I +
Sbjct: 280 CSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEG 339
Query: 556 EESIRQLAQYMYDFTTLNRRQRIIQRNRTERLSDLLDWRN 595
+ L + F R+ +R + + + W +
Sbjct: 340 IIDVDDLVEAFTFFKDEKNRKEYGKRVQ-DFVKTKPTWDD 378
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 54.6 bits (132), Expect = 7e-08
Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 45/219 (20%)
Query: 130 VPHLDIEANDAIILGHMVATFIAEFEKVAHNEFGPPKIITHFHEWQAGI-GLIALRTRKV 188
+ E L +A F E +I H H W +G G + ++
Sbjct: 88 IAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLI-HSHYWLSGQVGWLLRDLWRI 146
Query: 189 PVATVFTTHATLLGRYLCAGNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLAHVFT 248
P+ + T H + ++ + R E+ A V
Sbjct: 147 PL--IHTAHTLAAVKNSYRD---------------DSDTPESEARRICEQQLVDNADVLA 189
Query: 249 TVSEITGYEAEHLLKR------KPEVITPNGLNVVKFSAIHEFQNLHARAKEKINEFVRG 302
++ E + L+ + V+ G +V +S ++ +R +
Sbjct: 190 VNTQ---EEMQDLMHHYDADPDRISVV-SPGADVELYSPGNDRATERSRRE--------- 236
Query: 303 HFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARL 341
L + F GR + KG V I+++A L
Sbjct: 237 -----LGIPLHTKVVAF-VGRLQP-FKGPQVLIKAVAAL 268
Score = 30.7 bits (70), Expect = 1.7
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 490 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGF 529
R + PS+ E +G E G P I + G
Sbjct: 321 AVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGL 360
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 5e-07
Identities = 94/643 (14%), Positives = 177/643 (27%), Gaps = 168/643 (26%)
Query: 38 KAFVSSEELGNQYVLLGPYKEQSARTEVEEVEFMNGSPLQIAVDKMREHGFKLHVGNWLV 97
K+ +S EE+ ++++ + +Q V+++ + +L+
Sbjct: 43 KSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-----KFLM 95
Query: 98 DGNPQIILFDIGSAAWKMDEYKQELWSTCSLGVPHLDIEANDAIILGHMVATFIAEFEKV 157
K E +Q T + + D ND + + + + K+
Sbjct: 96 S-------------PIK-TEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 158 --AHNEFGP-PKIITHFHEWQAGIG---LIA--LRTRKVPVATVFTTHATLLGRYLCAGN 209
A E P ++ G G + + KV F L C
Sbjct: 141 RQALLELRPAKNVLID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSP 195
Query: 210 TDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLAHVFTTVSEITGYEAEHLLKRKPEVI 269
L QI + + H +++ + I E LLK KP
Sbjct: 196 ETVLEMLQKL-------LYQIDPNWTSR--SDHSSNIKLRIHSIQ-AELRRLLKSKP--- 242
Query: 270 TPNGL----NVVKFSAIHEFQNLHAR-----AKEKINEFVRGHFYGHYDFNLDKTLYFFT 320
N L NV A + F NL + +++ +F+ H +LD T
Sbjct: 243 YENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLT 299
Query: 321 AGRYEFTNKGADVFIESLARLNHYLKAANSDVTVVAFLIFPTKTNNFNVESLRGHAVTKS 380
E + L YL D+ P S+ +S
Sbjct: 300 PD-------------EVKSLLLKYLDCRPQDLPREVLTTNPR------RLSIIA----ES 336
Query: 381 LRDTINEIQG-KMSNMSK--RIYETCLMGRMPTE-----DEFFTKEDKTRIKR---CLY- 428
+RD + K N K I E+ L P E D I L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 429 -------------ALQRYSLPPVTTHNVIDDWNDPVLCAFRRCHLFNSVHDRVKVIFHPE 475
L +YSL ++ + +L V + H
Sbjct: 397 FDVIKSDVMVVVNKLHKYSL--------VEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 476 FLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGY-----TPAECTVMGIPSITTNLSGFG 530
+ N D ++ + F S+ G+ E + + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTL-FRMVFLDFR--- 501
Query: 531 CFMEEHI-----------------ADPTSYGIYIVD------RRNIALEESIRQLAQ--Y 565
F+E+ I Y YI D R A+ + + ++ +
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 566 MYDFTTLNRRQRIIQRNRTERLSDLLDWRNLGVYYKQARKLAQ 608
+T +++ L + ++ + +++ +
Sbjct: 561 CSKYT------DLLRIA--------LMAEDEAIFEEAHKQVQR 589
Score = 34.8 bits (79), Expect = 0.12
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 49/174 (28%)
Query: 532 FMEEHIADPTSYGIYIVDRRNIALEESIRQ-LAQYMYDFTTLNRRQRIIQRNRTERLSDL 590
F + + + D +++ ++ + L++ D + + + + T RL
Sbjct: 25 FEDAFVDN--------FDCKDV--QDMPKSILSKEEIDHI-IMSKDAV---SGTLRLFWT 70
Query: 591 LDWRNLGVYYKQARKLAQYMYDF-----------TTLNRRQRIIQRNRTERLSDLLDWRN 639
L + + K ++ + Y F ++ R I QR+R + + N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 640 LGVY----YKQARNKAL-----------------KAVFPDLEARNKALKAVFPD 672
V Y + R L K + ++
Sbjct: 131 --VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 50.7 bits (122), Expect = 1e-06
Identities = 35/214 (16%), Positives = 62/214 (28%), Gaps = 54/214 (25%)
Query: 129 GVPHLDIEANDAIILGHMVATFIAEFEKVAHNEFGPPKIITHFHEWQA-GIGLIALRTRK 187
G + I N ++ + +K G ++ H HE A + ++AL+ +
Sbjct: 74 GGKAVPIPYNGSVARLRFGPATHRKVKKWIAE--GDFDVL-HIHEPNAPSLSMLALQAAE 130
Query: 188 VPVATVFTTHATLLGRYLCAGNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLAHVF 247
P+ V T H + + + R
Sbjct: 131 GPI--VATFHTS------------------------TTKSLTLSVFQGILRPYHEKIIGR 164
Query: 248 TTVSEITGYEAEHLLKRKPEVITPNGLNVVKFSAIHEFQNLHARAKEKINEFVRGHFYGH 307
VS++ L I PNG++V F+
Sbjct: 165 IAVSDLARRWQMEALGSDAVEI-PNGVDVASFADAPLLDGYPREG--------------- 208
Query: 308 YDFNLDKTLYFFTAGRYEFTNKGADVFIESLARL 341
+T+ F GRY+ KG V + +L +L
Sbjct: 209 ------RTVLF--LGRYDEPRKGMAVLLAALPKL 234
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 46.2 bits (110), Expect = 3e-05
Identities = 30/178 (16%), Positives = 49/178 (27%), Gaps = 47/178 (26%)
Query: 168 ITHFHEW--QAGIGLIALRTRKVPVATVFTTHATLLGRYLCAGNTDFYNNLSTFDVDFEA 225
F A + A + V + +TH +G
Sbjct: 89 NVWFGAAAPLALMAGTAKQAGASKV--IASTHGHEVGW------------------SMLP 128
Query: 226 GRRQIYHRYCMERAASHLAHVFTTVSEITGYEAEHLL--KRKPEVITPNGLNVVKFSAIH 283
G RQ R V T +S+ T + E + P+G++V +F+
Sbjct: 129 GSRQS------LRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHL-PSGVDVKRFTPAT 181
Query: 284 EFQNLHARAKEKINEFVRGHFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARL 341
R K G D T R KG D I+++ ++
Sbjct: 182 PEDKSATRKK-----------LGF----TDTTPVIACNSRLVP-RKGQDSLIKAMPQV 223
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 45.9 bits (109), Expect = 4e-05
Identities = 26/214 (12%), Positives = 56/214 (26%), Gaps = 50/214 (23%)
Query: 137 ANDAIILGHMVATFIAEFEKVAHN-EFGPPKIITHFHEWQAGIGLIALRTRKVPVATVFT 195
+ M ++ + + + + H+ Q LI +K P ++
Sbjct: 98 NESLKLTEEMKELYLNVNRENSKFIDLSSFDYV-LVHDPQPA-ALIEFYEKKSPW--LWR 153
Query: 196 THATLLGRYLCAGNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLAHVFTTVSEITG 255
H L R+ + + R + E
Sbjct: 154 CHIDLSSPN-----------------------REFWEF--LRRFVEKYDRYIFHLPE--- 185
Query: 256 YEAEHLLKRKPEVITPNGLNVVKFSAIHEFQNLHARAKEKINEFVRGHFYGHYDFNLDKT 315
Y L + K ++ P ++ + + Q R E+ F++D
Sbjct: 186 YVQPELDRNKAVIM-PPSIDPLSEKNVELKQTEILRILER--------------FDVDPE 230
Query: 316 -LYFFTAGRYEFTNKGADVFIESLARLNHYLKAA 348
R++ KG IE ++ +
Sbjct: 231 KPIITQVSRFD-PWKGIFDVIEIYRKVKEKIPGV 263
Score = 30.5 bits (69), Expect = 2.1
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 490 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSG 528
F R + + S E +G T E G P I + G
Sbjct: 311 AFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGG 349
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 44.6 bits (106), Expect = 7e-05
Identities = 23/184 (12%), Positives = 46/184 (25%), Gaps = 47/184 (25%)
Query: 168 ITHFHEWQAGI--GLIALRTRKVPVATVFTTHATLLGRYLCAGNTDFYNNLSTFDVDFEA 225
I H H +A + + V T H TD
Sbjct: 102 ILHVHYAIPHAICAYLAKQMIGERIKIVTTLHG-----------TDITVL---------- 140
Query: 226 GRRQIYHRYCMERAASHLAHVFTTVSEITGYEAEHLL--KRKPEVITPNGLNVVKFSAIH 283
G + + R + V T VS E L+ + + + N ++ +
Sbjct: 141 GSDPSLNN--LIRFGIEQSDVVTAVSHSLINETHELVKPNKDIQTV-YNFIDERVYFKR- 196
Query: 284 EFQNLHARAKEKINEFVRGHFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARLNH 343
+ L +E + + K +++ A++
Sbjct: 197 DMTQLKKEYGISESEKI-----------------LIHISNFRK-VKRVQDVVQAFAKIVT 238
Query: 344 YLKA 347
+ A
Sbjct: 239 EVDA 242
Score = 37.3 bits (87), Expect = 0.015
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 23/123 (18%)
Query: 487 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIADPTSYGI- 545
+ E + L + S E +G E G+P I T + G E I G
Sbjct: 277 NVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIP----EVIQH----GDT 328
Query: 546 -YIVDRRNI-ALEESIRQLAQYMYDFTTLNRRQRIIQRNRTERLSDLLDWRN-----LGV 598
Y+ + + + + QL + D + + +R R E + + +
Sbjct: 329 GYLCEVGDTTGVADQAIQLLK---DE---ELHRNMGERAR-ESVYEQFRSEKIVSQYETI 381
Query: 599 YYK 601
YY
Sbjct: 382 YYD 384
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 37.3 bits (87), Expect = 0.016
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 487 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIADPTSYGIY 546
D E + L + P+Y E G E G+P +TT + G+ +IAD G
Sbjct: 263 DVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA----HYIADANC-GTV 317
Query: 547 IVDRRNI-ALEESIRQLAQ 564
I + + L E +R+
Sbjct: 318 IAEPFSQEQLNEVLRKALT 336
Score = 29.2 bits (66), Expect = 5.6
Identities = 29/195 (14%), Positives = 44/195 (22%), Gaps = 58/195 (29%)
Query: 158 AHNEFGPPKIITHFHEWQAGIGLI--ALRTRKVPVATVFTTHATLLGRYLCAGNTDFYNN 215
H + P + G+ + A VA L RY
Sbjct: 74 NHLKEHPADRV-VGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYR---------- 122
Query: 216 LSTFDVDFEAGRRQIYHRYCMERA---ASHLAHVFTTVSEITGYEAEHLLKR------KP 266
H ERA + + K +
Sbjct: 123 ----------------HYAAFERATFEQGKSTKLMMLTD----KQIADFQKHYQTEPERF 162
Query: 267 EVITPNGLNVVKFSAIHEFQNLHARAKEKINEFVRGHFYGHYDFNLDKTLYFFTAGRYEF 326
+++ P G+ + ++ E R L G F
Sbjct: 163 QIL-PPGIYPDRK---------YSEQIPNSREIYRQKNGIKEQ---QNLLLQ--VGSD-F 206
Query: 327 TNKGADVFIESLARL 341
KG D IE+LA L
Sbjct: 207 GRKGVDRSIEALASL 221
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 37.1 bits (85), Expect = 0.019
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 16/117 (13%)
Query: 487 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIADPTSYGIY 546
DY + ++ +G+ Y P E G+ IT ++ I
Sbjct: 307 DYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKYEN-----KDLSNWH--SNIV 359
Query: 547 IVDRRNI-ALEESIRQLAQYMYDFTTLNRRQRIIQRNRTERLSDLLDWRNLGVYYKQ 602
+++ N + E++ +L + R + + + + ++ N + K+
Sbjct: 360 SLEQLNPENIAETLVELCM--------SFNNRDVDKKESSNMMFYINEFNEFSFIKE 408
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 35.6 bits (83), Expect = 0.024
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 490 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSG 528
+ C + + E +G TP E G P I N G
Sbjct: 93 DLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGG 131
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 35.0 bits (80), Expect = 0.11
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 20/175 (11%)
Query: 469 KVIFHPEFLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSG 528
+ + + G Y V P+ YE +G T E G+P+ T G
Sbjct: 641 QFRWISSQMDR--VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG 698
Query: 529 FGCFMEEHIADPTSYGIYIVDRRNIALEESIRQLAQYMYDFTTLNRRQRIIQRNRTERLS 588
E I S G + +D + +++ LA + I + +R+
Sbjct: 699 ----PAEIIVHGKS-GFH-IDPYHG--DQAADTLADFFTKCKEDPSHWDEISKGGLQRIE 750
Query: 589 DLLDWRNLGVYYKQARKLAQYMYDFTTLNRRQRIIQRNRTERLSDL---LDWRNL 640
+ W+ +++L + + + R R ++ L +R L
Sbjct: 751 EKYTWQ------IYSQRLLT-LTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPL 798
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold,
closed-form, ADP and glucose binding, glycogen
biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli}
PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Length = 485
Score = 33.3 bits (77), Expect = 0.29
Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 47/134 (35%)
Query: 160 NEFGPPKIITHFHEWQAGIGLIA--LRTRKVPVATVFTTH------------ATLLG--- 202
+ F P ++ H H+W A GL L R P +VFT H +
Sbjct: 125 DPFWRPDVV-HAHDWHA--GLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPW 181
Query: 203 RYLCAGNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLAHVFTTVS-----EIT--- 254
+ +F +S +AG +Y+ A T VS EIT
Sbjct: 182 SFFNIHGLEFNGQISF----LKAG---LYY-----------ADHITAVSPTYAREITEPQ 223
Query: 255 -GYEAEHLLKRKPE 267
Y E LL+++
Sbjct: 224 FAYGMEGLLQQRHR 237
>3fro_A GLGA glycogen synthase; glycosyltransferase family,
UDP/ADP-glucose-glycogen synthas rossman folds,
transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB:
2bis_A* 3l01_A*
Length = 439
Score = 32.9 bits (76), Expect = 0.45
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 34/109 (31%)
Query: 165 PKIITHFHEWQAGIGLIALRTRKVPVATVFTTH--------ATLLGRYLCAGNTDFYNNL 216
P ++ HFH+W ++ + VFT H A Y ++
Sbjct: 123 PDVV-HFHDWHTVFAGALIKKYF-KIPAVFTIHRLNKSKLPAFYFH-EAGLSELAPYPDI 179
Query: 217 STFDVDFEAGRRQIYHRYCMERAASHLAHVFTTVS-----EITGYEAEH 260
E ++A + TTVS + G+
Sbjct: 180 D------------------PEHTGGYIADIVTTVSRGYLIDEWGFFRNF 210
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann
fold, glycosyltransferase, transferase; 1.50A
{Helicobacter pylori}
Length = 166
Score = 31.0 bits (71), Expect = 0.73
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 19/100 (19%)
Query: 464 VHDRVKVIFHPEFLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSIT 523
V F++S L E ++ C L V + E E +GI +
Sbjct: 56 VKAEFG------FVNSNELL------EILKTCTLYVHAANVESEAIACLEAISVGIVPVI 103
Query: 524 TNLSGFGCFMEEHIADPTSYGIYIVDRRNI-ALEESIRQL 562
N + D + + N L I
Sbjct: 104 ANSPLSA--TRQFALD----ERSLFEPNNAKDLSAKIDWW 137
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 30.8 bits (69), Expect = 1.8
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 20/97 (20%)
Query: 59 QSARTEVEEVEFMNGSPLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEY 118
+ V+ E ++ + H +H GN LV I + D
Sbjct: 183 AAIHRLVDTSEKLSKKIQPDLDKYVLCHS-DIHAGNVLVGNEESIYIID----------- 230
Query: 119 KQELWSTCSLGVPHLDIEANDAIILGHMVATFIAEFE 155
W L D+ I G + + E
Sbjct: 231 ----WDEPMLAPKERDL----MFIGGGVGNVWNKPHE 259
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann
fold, ADP-binding, transferase; HET: ADP; 2.30A
{Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Length = 485
Score = 30.6 bits (70), Expect = 2.2
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 51/152 (33%)
Query: 151 IAEFEKVAHNEFGPPKIITHFHEWQAGIGLIA--LRTRKVP-VATVFTTH---------- 197
A + P ++ H H+WQA + +R + P + ++ T H
Sbjct: 118 AARIGAGVLPGWRP-DMV-HAHDWQA--AMTPVYMRYAETPEIPSLLTIHNIAFQGQFGA 173
Query: 198 --ATLLG---RYLCAGNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLAHVFTTVS- 251
+ L ++YN++S + G + A +TVS
Sbjct: 174 NIFSKLALPAHAFGMEGIEYYNDVSF----LKGG---LQT-----------ATALSTVSP 215
Query: 252 ----EIT----GYEAEHLLKRKPEVIT--PNG 273
EI G E ++ + V+ NG
Sbjct: 216 SYAEEILTAEFGMGLEGVIGSRAHVLHGIVNG 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 29.9 bits (68), Expect = 2.8
Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 553 IALEESIRQLAQYMYDFTTLNRRQRI-IQRNRTERLSDLLDWRNLGVYYKQARKLAQ-YM 610
LEES+ + A+ + + R+ ++++ + + ++ ++ + ++
Sbjct: 70 AMLEESVEETAEDL-----IGLHNRVRLRQSDSLKREI-IENGKFDQWFDELFGNDTFHL 123
Query: 611 YDFTTLNRRQRIIQRNRTERLSDLLD 636
YD R+ + + L
Sbjct: 124 YDSFAEAETDRL--LAKLAYMRSGLG 147
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 29.7 bits (67), Expect = 3.3
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 14/84 (16%)
Query: 490 EFVRGCHLGVFPS----------YYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIAD 539
+ + H + S + EP +E V G P + T E +
Sbjct: 227 DLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLA----EIVPS 282
Query: 540 PTSYGIYIVDRRNIALEESIRQLA 563
Y D ++ L
Sbjct: 283 VGEVVGYGTDFAPDEARRTLAGLP 306
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 27.3 bits (61), Expect = 3.4
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 20/65 (30%)
Query: 618 RRQRIIQRNRT------ERLSDLLDWRNLGVYYKQARNKALKAVFPDLEARNKALKAVFP 671
++ + +++N+T ++ K+A +AL +LE +N+ALK
Sbjct: 2 KKLKKMEQNKTAATRYRQK--------------KRAEQEALTGECKELEKKNEALKERAD 47
Query: 672 DLEVE 676
L E
Sbjct: 48 SLAKE 52
>3tj0_A Nucleoprotein; RNA-binding, HOMO-oligomerization, transcription
regulation, RNA binding protein; 3.23A {Influenza b
virus}
Length = 562
Score = 29.1 bits (64), Expect = 5.6
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 692 RPYSEPPSPSSSRATTPVPSQRNSDDEDSVDDESERAPVPSQRNSDDEDSVDDESE 747
RP + P PS+ R P P + + ED V ++++ P++ + V E
Sbjct: 36 RPATLAP-PSNKRTRNPSPERATTSSEDDVGRKTQKKQTPTEIKKSVYNMVVKLGE 90
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding;
HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A*
3aua_A*
Length = 488
Score = 28.4 bits (64), Expect = 9.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 458 CHLFNSVHDRVKVIFHPE 475
LF+ ++ ++VI H E
Sbjct: 320 HFLFDVDYNDIEVIVHKE 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,133,652
Number of extensions: 765787
Number of successful extensions: 1958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 45
Length of query: 755
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 654
Effective length of database: 3,881,772
Effective search space: 2538678888
Effective search space used: 2538678888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.0 bits)