RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4649
(755 letters)
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 35.8 bits (81), Expect = 0.021
Identities = 49/341 (14%), Positives = 107/341 (31%), Gaps = 53/341 (15%)
Query: 21 AWEVA--NKVGGIYTVIRS--KAFVSSEELGNQ-YVLLGPYK--EQSARTEVEEVEFMNG 73
+ E+ K GG+ V+ + A G + L+ Y + + V+ EF +
Sbjct: 7 SSEIYPLIKTGGLADVVGALPIALE---AHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDL 63
Query: 74 SPLQIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEYKQELWSTCSLGVPHL 133
+ + +++ L ++D P ++ + K +
Sbjct: 64 LGEKADLLEVQHERLDL----LILD-APA--YYERSGGPYLGQTGKDYPDN--------- 107
Query: 134 DIEANDAIILGHMVATFIAEFEKVAHNEFGPPKIITHFHEWQAGIGLIALRTRKVP-VAT 192
A +A A G + H H+WQA + + +R + P + +
Sbjct: 108 ---------WKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIPS 158
Query: 193 VFTTHATLLGRYLCAGNTDFYNNLSTFDVDFEAGRRQIYHRYCMERAASHLAHVFTTVSE 252
+ T H + + ++ L+ F + Y+ + A +TVS
Sbjct: 159 LLTIHNI---AFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSP 215
Query: 253 IT---------GYEAEHLLKRKPEVIT--PNGLNVVKFSAIHEFQNLHARAKEKINEFVR 301
G E ++ + V+ NG++ ++ + + +
Sbjct: 216 SYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRAL 275
Query: 302 GHFYGHYDFNLD--KTLYFFTAGRYEFTNKGADVFIESLAR 340
F +D + F R + KG D+ E++
Sbjct: 276 NKKAVAEHFRIDDDGSPLFCVISRLTW-QKGIDLMAEAVDE 315
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 32.2 bits (72), Expect = 0.22
Identities = 8/124 (6%), Positives = 30/124 (24%), Gaps = 15/124 (12%)
Query: 445 DDWNDPVLCAFRRCHLFNSVHDRVKVIFHPEFLSSTNPLFGLDYEEFVRGCHLGVFPSYY 504
D + + ++ + + + R +G+
Sbjct: 301 GDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLR 360
Query: 505 EPWGYTPAECTVMGIPS-----ITTNLSGFGCFMEEHIADPTSYGIYIVDRRNI-ALEES 558
+ E P+ + + +G + + IV+ + + +
Sbjct: 361 DGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSAL---------IVNPYDRDEVAAA 411
Query: 559 IRQL 562
+ +
Sbjct: 412 LDRA 415
>d2dn3a1 a.1.1.2 (A:2-141) Hemoglobin, alpha-chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 30.8 bits (69), Expect = 0.25
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 88 FKLHVGNWLVDGNPQIILFDIGSAAWKMDEYKQELWSTCSLGVPHLDIEANDAIILGHMV 147
F L G+ V G+ + + + +A +D+ L + L L ++ + +L H +
Sbjct: 45 FDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCL 104
Query: 148 ATFIAEFEKVAHNEFGP 164
+A EF P
Sbjct: 105 LVTLAA---HLPAEFTP 118
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 32.1 bits (71), Expect = 0.29
Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 13/155 (8%)
Query: 441 HNVIDDWNDPVLCAFRRCHLFNSVHDRVKVIFHPEFLSSTNPLFGLDYEEFVRGCHLGVF 500
+ ++ + + R H T L E +
Sbjct: 275 LSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVII 334
Query: 501 PSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIADPTSYGIYIVDRRNIALEESIR 560
PSY+EP+G E +G I + + G + + I + T +V +
Sbjct: 335 PSYFEPFGLVALEAMCLGAIPIASAVGG----LRDIITNETG---ILVKAGDPG------ 381
Query: 561 QLAQYMYDFTTLNRRQRIIQRNRTERLSDLLDWRN 595
+LA + L+R R ++ + W
Sbjct: 382 ELANAILKALELSRSDLSKFRENCKKRAMSFSWEK 416
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 29.9 bits (65), Expect = 1.1
Identities = 45/381 (11%), Positives = 95/381 (24%), Gaps = 34/381 (8%)
Query: 236 MERAASHLAHVFTTVSEITGYEAEHLLKRKPEVITPNGLNVVK-----FSAIHEFQNLHA 290
++R +A G+ + + E P +++ + +A
Sbjct: 15 LQRDFMRIASTVAA----RGHHV-RVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYA 69
Query: 291 RAKEKINEFVRGHFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARLNHYLKAANS 350
+ + E G + E + +R HY +
Sbjct: 70 WVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERA 129
Query: 351 DVTVVAFLIFPTKTNNFNVESLRGHAVTKSLRDTINEIQGKMSNMSKRIYETCLMGRMPT 410
T+ + + + + S++I + + R
Sbjct: 130 TFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQ-- 187
Query: 411 EDEFFTKEDKTRIKRCLYALQRYSLPPVTTHNVIDDWNDPVLCAFRRCHLFNSVHDRVKV 470
+ KE + + + R + +
Sbjct: 188 --KNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALA 245
Query: 471 IFHPEFLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG 530
+ D E + L + P+Y E G E G+P +TT + G+
Sbjct: 246 EKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA 305
Query: 531 CFMEEHIADPTSYGIYIVDRRNI-ALEESIRQLAQYMYDFTTLNRRQRIIQRNRTERLSD 589
++ + G I + + L E +R+ T R + R +D
Sbjct: 306 HYIADANC-----GTVIAEPFSQEQLNEVLRKA------LTQSPLRMAWAENAR--HYAD 352
Query: 590 LLDWRNLGVYYKQARKLAQYM 610
D Y K A +
Sbjct: 353 TQDL------YSLPEKAADII 367
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 28.8 bits (63), Expect = 2.5
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 77 QIAVDKMREHGFKLHVGNWLVDGNPQIILFDIGSAAWKMDEYKQELWSTCSLGVPHLDIE 136
++ + V +LV+ +++L D G+A + + + G +
Sbjct: 47 SALAKSFQKAPLETSVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQV- 105
Query: 137 ANDAIILGHMVATFIAEFEKVAHNEFGPPKIITHFHEWQ 175
D I + HM + F + E
Sbjct: 106 --DEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQKEAD 142
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 28.6 bits (64), Expect = 3.1
Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 34/194 (17%)
Query: 416 TKEDKTRIKRCLYALQRYSLPPVTTHNVIDDWNDPVLCAFRRCHLFNSVHDRVKVIFHPE 475
T +D R ++ L + + + D + AF F
Sbjct: 55 TPQDTPRFQQLLGDGSNWG---LDLQYAVQPSPDGLAQAFLIGESFIGNDLSA------- 104
Query: 476 FLSSTNPLFGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPS--------ITTNLS 527
+ N +G D+ E + +V + +
Sbjct: 105 LVLGDNLYYGHDFHELLGSASQ------------RQTGASVFAYHVLDPERYGVVEFDQG 152
Query: 528 GFGCFMEEHIADPTS-Y---GIYIVDRRNIALEESIRQLAQYMYDFTTLNRRQRIIQRNR 583
G +EE +P S Y G+Y D++ + + ++ + + T +NR +
Sbjct: 153 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLS 212
Query: 584 TERLSDLLDWRNLG 597
E + W + G
Sbjct: 213 VEIMGRGYAWLDTG 226
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 26.0 bits (57), Expect = 4.0
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 70 FMNGSPLQIAVDKMREHGFKLHVG 93
L A ++++++G ++
Sbjct: 50 GHGELHLATAKERLQDYGVEVEFS 73
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 27.0 bits (59), Expect = 5.1
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 518 GIPSITTNLSGFGCFMEEHIADPTSYGIYIVDRRNIALEESIRQLAQYMYDFTTLNRRQR 577
G S L+ + E + D G Y+++ + L ++A
Sbjct: 19 GETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGT- 77
Query: 578 IIQRNRTERLSDLLDWRNLGVYYKQAR 604
+ RN+ +R+ D+ + +
Sbjct: 78 AVARNQVQRIEDVHVFDGHIACDAASN 104
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 27.2 bits (59), Expect = 5.5
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 282 IHEFQNLHARAKEKINEFVRGHFYGHYDFNLDKTLYFFTAGRYEFTNKGA-----DVFIE 336
I + A + V D L F G+Y+ +G DVF++
Sbjct: 117 IKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQ 176
Query: 337 SLARLNHYLKA 347
A YL
Sbjct: 177 QYADTVKYLSE 187
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 27.2 bits (59), Expect = 6.9
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 625 RNRTERLSDLLD-WRNLGVYYKQARNKALKAVFPDLEARNKALKAVFPDLEVEDDDTDSG 683
R + L L+ + + YY + + V+ L ++ FPDL D T
Sbjct: 8 TTRAQELRKQLNQYSHE--YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRV 65
Query: 684 YGGRFSYPRPYSEPPSPSSSRAT 706
G S S
Sbjct: 66 GGKVLSGFEKAPHDIPMYSLNDG 88
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 27.1 bits (59), Expect = 7.1
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 405 MGRMPTEDEFFTKEDKTRIKRCLYALQRYSL--PPVT---THNVIDDWNDPVLCAFRRCH 459
+P + F + K + + L Y + + T+ + PV+C
Sbjct: 135 FSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGS-- 192
Query: 460 LFNSVHDRVKVIF 472
S+ + + +F
Sbjct: 193 --PSIKENIGSVF 203
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 26.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 468 VKVIFHPEFLS---STNPLFGLDYEEFVRGC 495
V FHPEF S +PLF FV+
Sbjct: 224 VACQFHPEFTSTPRDGHPLF----AGFVKAA 250
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 27.1 bits (59), Expect = 8.6
Identities = 23/178 (12%), Positives = 46/178 (25%), Gaps = 29/178 (16%)
Query: 167 IITHFHEWQAGIGLIALRTRKVPV-----ATVFTTHATL-LGRYLCAGNTDFYNNLSTFD 220
I++ +G +L V+ T + LGR D Y +
Sbjct: 58 ILSQPTI--ECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVST---IDSYASA---- 108
Query: 221 VDFEAGRRQIYHRYCMERAASHLAHVFTTVSEITGYEAEHLLKRKPEVITPNGLNVVKFS 280
++ +E H+ Y L+ + +GL ++ ++
Sbjct: 109 ---GVIGPYDTNKLDLEDIEISFDHI-----VPLKYSQLVDLRSR-----YDGLTLLAYN 155
Query: 281 AIHEFQNLHARAKEKINEFV-RGHFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIES 337
A + V + D L+ G+ T I +
Sbjct: 156 AGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITT 213
>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
{Clostridium perfringens, different strains [TaxId:
1502]}
Length = 249
Score = 26.5 bits (58), Expect = 9.9
Identities = 14/84 (16%), Positives = 18/84 (21%), Gaps = 10/84 (11%)
Query: 293 KEKINEFVRGHFYGHYDFNLDKTLYFFTAGRYEFTNKGADVFIESLARLNHYLKAANSDV 352
+ Y D + F RYE+ L HY D+
Sbjct: 76 NNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYF----GDI 131
Query: 353 TVVAFLIFPTKTNNFNVESLRGHA 376
P N GH
Sbjct: 132 DT------PYHPANVTAVDSAGHV 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,964,886
Number of extensions: 146316
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 24
Length of query: 755
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 663
Effective length of database: 1,144,436
Effective search space: 758761068
Effective search space used: 758761068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)