BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4650
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLEGH N+S FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
I+I+GSEDG++++W+S T+++E +L GLER W I++ N +A G+D G +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REEPAVSMDVNGCKIIWARHSEVQQANLKT 223
+EP +S+D G K++W+ +++ T
Sbjct: 302 NDEPTLSLDPVG-KLVWSGGKNAAASDIFT 330
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCV-QTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVW 149
KPY++SG+DD VK+W+++N + QT EGH + V F+P+ P +G D +V+VW
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 150 HSGTHRLEISLTYGLER 166
G +LT G ER
Sbjct: 169 SLGQSTPNFTLTTGQER 185
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
K ++I G+DD +++++Y V E H I ++ HP P V++GS+D +V++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
I KT V +D++ +P++++ V+IW+Y+ + V++++ + A
Sbjct: 5 IKKTFSNRSDRVKGIDFHP--TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 130 FHPELPIVITGSEDGSVRVWHSGT 153
F +I GS+D +RV++ T
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT 86
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLEGH N+S FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
I+I+GSEDG++++W+S T+++E +L GLER W I++ N +A G+D G +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REEPAVSMDVNGCKIIWARHSEVQQANLKT 223
+EP +S+D G K++W+ +++ T
Sbjct: 302 NDEPTLSLDPVG-KLVWSGGKNAAASDIFT 330
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCV-QTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVW 149
KPY++SG+DD VK+W+++N + QT EGH + V F+P+ P +G D +V+VW
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 150 HSGTHRLEISLTYGLER 166
G +LT G ER
Sbjct: 169 SLGQSTPNFTLTTGQER 185
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
K ++I G+DD +++++Y V E H I ++ HP P V++GS+D +V++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
I KT V +D++ +P++++ V++W+Y+ + V++++ + A
Sbjct: 5 IKKTFSNRSDRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 130 FHPELPIVITGSEDGSVRVWHSGT 153
F +I GS+D +RV++ T
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT 86
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 88/123 (71%), Gaps = 2/123 (1%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLEGH N+S FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
I+I+GSEDG++++W+S T+++E +L GLER W I++ N +A G+D G +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REE 196
+E
Sbjct: 302 NDE 304
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCV-QTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVW 149
KPY++SG+DD VK+W+++N + QT EGH + V F+P+ P +G D +V+VW
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 150 HSGTHRLEISLTYGLER 166
G +LT G ER
Sbjct: 169 SLGQSTPNFTLTTGQER 185
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
K ++I G+DD +++++Y V E H I ++ HP P V++GS+D +V++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
I KT V +D++ +P++++ V++W+Y+ + V++++ + A
Sbjct: 5 IKKTFSNRSDRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 130 FHPELPIVITGSEDGSVRVWHSGT 153
F +I GS+D +RV++ T
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT 86
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 88/123 (71%), Gaps = 2/123 (1%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLEGH N+S FHP LP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISS--LKGSNNVAIGYDEGSVLLKVG 193
I+I+GSEDG++++W+S T+++E +L GLER W I++ N +A G+D G +L +G
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Query: 194 REE 196
+E
Sbjct: 302 NDE 304
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCV-QTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVW 149
KPY++SG+DD VK+W+++N + QT EGH + V F+P+ P +G D +V+VW
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 150 HSGTHRLEISLTYGLER 166
G +LT G ER
Sbjct: 169 SLGQSTPNFTLTTGQER 185
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 92 KPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
K ++I G+DD +++++Y V E H I ++ HP P V++GS+D +V++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
I KT V +D++ +P++++ V++W+Y+ + V++++ + A
Sbjct: 5 IKKTFSNRSDRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 130 FHPELPIVITGSEDGSVRVWHSGT 153
F +I GS+D +RV++ T
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT 86
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 56 SRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 114
SR K V+T + L TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRC 372
Query: 115 VQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
++TL H ++++ FH P V+TGS D +V+VW
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
+TL GH V + + H G L S + D +K+WD+Q C++T+ GH N+S+V
Sbjct: 144 RTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 132 PELPIVITGSEDGSVRVW 149
P +++ S D ++++W
Sbjct: 202 PNGDHIVSASRDKTIKMW 219
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
++T++GH+ V+ V GD +++S + D+ +K+W+ Q CV+T GH + + V
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
+ + ++ + S D +VRVW T + L V IS S+ +I GS
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 191 KVGREEP 197
K G+ P
Sbjct: 303 KSGKPGP 309
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 89 GGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
G P+L+SG+ D+ +K+WD C+ TL GH + V FH +++ ++D ++RV
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 149 WHSGTHRLEISL 160
W R +L
Sbjct: 365 WDYKNKRCMKTL 376
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 95 LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
++S ++D +K+WDY+ +TL+GH ++ + F ++ + S D ++++W
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 118 LEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL 160
L GH ++ V FHP ++++ SED +++VW T E +L
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 146
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 23/120 (19%)
Query: 55 SSRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 113
+SR K +V T +KT GH + V V G + S ++D+ V++W K
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKE 267
Query: 114 CVQTLEGHGQNISAVCFHPEL--------------------PIVITGSEDGSVRVWHSGT 153
C L H + + + PE P +++GS D ++++W T
Sbjct: 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
+KTL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 373 MKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K LDISD R++ +LR AAE LS++ + V V+SL+DG DF +++RARFE L
Sbjct: 254 KTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSLTRARFEDLNA 313
Query: 306 GLLTSFVQPCMHVL 319
L S ++P VL
Sbjct: 314 ALFKSTLEPVEQVL 327
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLS 367
L + + LS++ + V V+SL+DG DF +++RARFE L L S ++P+E VL
Sbjct: 269 LRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSLTRARFEDLNAALFKSTLEPVEQVLK 328
Query: 368 RSNITHDQINK 378
+ I+ QI++
Sbjct: 329 DAKISKSQIDE 339
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 83 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTGK 164
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTAS 204
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 89
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIW 116
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 309
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 310 ACHPTENIIASAALENDKTIKLWKS 334
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 223
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 224 FSPNGKYILAATLDNTLKLW 243
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 287
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 288 WNLQTKEI 295
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 81 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGK 162
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTAS 202
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 87
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIW 114
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 307
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 308 ACHPTENIIASAALENDKTIKLWKS 332
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 221
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 222 FSPNGKYILAATLDNTLKLW 241
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 285
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 286 WNLQTKEI 293
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 62 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVW 149
P+ ++++GS D SVR+W
Sbjct: 120 PQSNLIVSGSFDESVRIW 137
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS 183
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ ++ TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIW 95
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D +V IW+ Q K VQ L+GH + +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 51 SYQESSRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 109
S+ ES R+ V T + LKTL H V+ V + G ++S + D L +IWD
Sbjct: 129 SFDESVRI-----WDVKTGMCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDT 181
Query: 110 QNKTCVQTL-EGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
+ C++TL + +S V F P ++ + D ++++W
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 267 WNLQTKEI 274
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 59 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGK 140
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTAS 180
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIW 92
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 286 ACHPTENIIASAALENDKTIKLWKS 310
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 199
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 200 FSPNGKYILAATLDNTLKLW 219
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 264 WNLQTKEI 271
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 62 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVW 149
P+ ++++GS D SVR+W
Sbjct: 120 PQSNLIVSGSFDESVRIW 137
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS 183
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ ++ TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIW 95
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D +V IW+ Q K VQ L+GH + +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 51 SYQESSRVKAFNPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 109
S+ ES R+ V T + LKTL H V+ V + G ++S + D L +IWD
Sbjct: 129 SFDESVRI-----WDVKTGMCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDT 181
Query: 110 QNKTCVQTL-EGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
+ C++TL + +S V F P ++ + D +++W
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 267 WNLQTKEI 274
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 76 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 133
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGK 157
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTAS 197
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 82
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIW 109
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 302
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 303 ACHPTENIIASAALENDKTIKLWKS 327
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 216
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 217 FSPNGKYILAATLDNTLKLW 236
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 280
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 281 WNLQTKEI 288
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 65 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGK 146
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 131 HPELPIVITGSEDGSVRVWHSGTHR 155
+ + ++++ S DG R+W + + +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQ 188
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIW 98
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 205
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 206 FSPNGKYILAATLDNTLKLW 225
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 270 WNLQTKEI 277
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 55 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 112
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGK 136
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTAS 176
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 61
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIW 88
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 281
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 282 ACHPTENIIASAALENDKTIKLWKS 306
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 195
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 196 FSPNGKYILAATLDNTLKLW 215
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 259
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 260 WNLQTKEI 267
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 64 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGK 145
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 131 HPELPIVITGSEDGSVRVWHSGTHR 155
+ + ++++ S DG R+W + + +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQ 187
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 70
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIW 97
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 290
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 291 ACHPTENIIASAALENDKTIKLWKS 315
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 204
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 205 FSPNGKYILAATLDNTLKLW 224
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 268
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 269 WNLQTKEI 276
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 62 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGK 143
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 131 HPELPIVITGSEDGSVRVWHSGTHR 155
+ + ++++ S DG R+W + + +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQ 185
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH IS V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 133 ELPIVITGSEDGSVRVW 149
+ ++++ S+D ++++W
Sbjct: 79 DSNLLVSASDDKTLKIW 95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D +++++ S
Sbjct: 289 ACHPTENIIASAALENDKTIKLFKS 313
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 203 FSPNGKYILAATLDNTLKLW 222
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 267 WNLQTKEI 274
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 60 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 117
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGK 141
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTAS 181
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 66
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIW 93
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 286
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 287 ACHPTENIIASAALENDKTIKLWKS 311
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 200
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 201 FSPNGKYILAATLDNTLKLW 220
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 264
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 265 WNLQTKEI 272
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 59 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGK 140
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTAS 180
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIW 92
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 286 ACHPTENIIASAALENDKTIKLWKS 310
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 199
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 200 FSPNGKYILAATLDNTLKLW 219
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 264 WNLQTKEI 271
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 65 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGK 146
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 131 HPELPIVITGSEDGSVRVWHSGTHR 155
+ + ++++ S DG R+W + + +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQ 188
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIW 98
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 205
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 206 FSPNGKYILAATLDNTLKLW 225
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 270 WNLQTKEI 277
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 62 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGK 143
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
+ + ++++ S DG R+W + +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS 183
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH IS V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 133 ELPIVITGSEDGSVRVW 149
+ ++++ S+D ++++W
Sbjct: 79 DSNLLVSASDDKTLKIW 95
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D +++++ S
Sbjct: 289 ACHPTENIIASAALENDKTIKLYKS 313
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 203 FSPNGKYILAATLDNTLKLW 222
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 267 WNLQTKEI 274
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 62 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGK 143
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 131 HPELPIVITGSEDGSVRVWHSGTHR 155
+ + ++++ S DG R+W + + +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQ 185
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
TL GH K V+ V + G+ +L + + D+L+KIW + +T+ GH IS V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGE--WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 133 ELPIVITGSEDGSVRVW 149
+ ++++ S+D ++++W
Sbjct: 79 DSNLLVSASDDKTLKIW 95
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 203 FSPNGKYILAATLDNTLKLW 222
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 267 WNLQTKEI 274
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 58 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 115
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGK 139
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 131 HPELPIVITGSEDGSVRVWHSGTHR 155
+ + ++++ S DG R+W + + +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQ 181
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 64
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIW 91
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 284
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 285 ACHPTENIIASAALENDKTIKLWKS 309
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 198
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 199 FSPNGKYILAATLDNTLKLW 218
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 262
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 263 WNLQTKEI 270
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
KT+ GH+ G++ D D L+S +DD+ +KIWD + C++TL+GH + F+
Sbjct: 65 KTISGHKLGIS--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 132 PELPIVITGSEDGSVRVWHSGTHR 155
P+ ++++GS D SVR+W T +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGK 146
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
LKTL GH V C ++ + ++SG+ D V+IWD + C++TL H +SAV F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 131 HPELPIVITGSEDGSVRVWHSGTHR 155
+ + ++++ S DG R+W + + +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQ 188
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
P++ + TL GH K V+ V + G+ +L S + D+L+KIW + +T+ GH
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 123 QNISAVCFHPELPIVITGSEDGSVRVW 149
IS V + + ++++ S+D ++++W
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIW 98
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 71 LKTLYGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV 128
LKT GH+ C+ ++ G K +++SG++D LV IW+ Q K VQ L+GH + +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 129 CFHPELPIVITGS--EDGSVRVWHS 151
HP I+ + + D ++++W S
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL-EGHGQNISAVC 129
LKTL H V+ V + G ++S + D L +IWD + C++TL + +S V
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 205
Query: 130 FHPELPIVITGSEDGSVRVW 149
F P ++ + D ++++W
Sbjct: 206 FSPNGKYILAATLDNTLKLW 225
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI-----VITGSEDGSVRV 148
Y+++ D +K+WDY C++T GH C + +++GSED V +
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 149 WHSGTHRL 156
W+ T +
Sbjct: 270 WNLQTKEI 277
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH VN V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 254 LLQTLTGHSSSVNGVAFRP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 310
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
F P+ + + S+D +V++W+ L+ +LT VW ++ +A D+ +V
Sbjct: 311 FSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 369
Query: 190 L 190
L
Sbjct: 370 L 370
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH +++ V
Sbjct: 213 LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVA 269
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
F P+ + + S+D +V++W+ L+ +LT VW ++ +A D+ +V
Sbjct: 270 FRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 190 L 190
L
Sbjct: 329 L 329
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 90 LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 146
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
F P+ + + S+D +V++W+ L+ +LT VW ++ +A D+ +V
Sbjct: 147 FSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 190 L 190
L
Sbjct: 206 L 206
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 49 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 105
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
F P+ + + S+D +V++W+ L+ +LT VW ++ +A D+ +V
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 190 L 190
L
Sbjct: 165 L 165
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 459 LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 515
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTIS 171
F P+ + + S+D +V++W+ L+ +LT VW ++
Sbjct: 516 FSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVA 556
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V F
Sbjct: 337 LQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 393
Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLL 190
P+ + + S+D +V++W+ L+ +LT VW ++ +A D+ +V L
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 377 LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 433
Query: 130 FHPELPIVITGSEDGSVRVWH 150
F P+ + + S+D +V++W+
Sbjct: 434 FSPDDQTIASASDDKTVKLWN 454
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 418 LLQTLTGHSSSVWGVAFSP--DDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 474
Query: 130 FHPELPIVITGSEDGSVRVWH 150
F P+ + + S+D +V++W+
Sbjct: 475 FSPDGQTIASASDDKTVKLWN 495
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 172 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 228
Query: 130 FHPELPIVITGSEDGSVRVWH 150
F P+ + + S+D +V++W+
Sbjct: 229 FSPDGQTIASASDDKTVKLWN 249
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 500 LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 556
Query: 130 FHPELPIVITGSEDGSVRVWH 150
F P+ + + S D +V++W+
Sbjct: 557 FSPDGQTIASASSDKTVKLWN 577
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 131 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 187
Query: 130 FHPELPIVITGSEDGSVRVWH 150
F P+ + + S+D +V++W+
Sbjct: 188 FSPDGQTIASASDDKTVKLWN 208
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L+TL GH V V + D + S +DD+ VK+W+ +N +QTL GH ++ V
Sbjct: 295 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVA 351
Query: 130 FHPELPIVITGSEDGSVRVWH 150
F P+ + + S+D +V++W+
Sbjct: 352 FSPDGQTIASASDDKTVKLWN 372
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE 133
L H V V + D + S +DD+ VK+W+ +N +QTL GH ++ V F P+
Sbjct: 12 LEAHSSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 134 LPIVITGSEDGSVRVWH 150
+ + S+D +V++W+
Sbjct: 69 GQTIASASDDKTVKLWN 85
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ ++ + + D + ++SY+ KA
Sbjct: 56 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 113
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++++L + + Y G Y ++ A ++ + Y N + Q +
Sbjct: 114 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 160
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 161 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 196
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 197 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 242
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 243 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 302
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 303 EELCSDLFRSTLEPVEKAL 321
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ ++ + + D + ++SY+ KA
Sbjct: 56 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 113
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++++L + + Y G Y ++ A ++ + Y N + Q +
Sbjct: 114 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 160
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 161 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 196
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 197 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 242
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 243 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 302
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 303 EELCSDLFRSTLEPVEKAL 321
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ ++ + + D + ++SY+ KA
Sbjct: 54 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 111
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++++L + + Y G Y ++ A ++ + Y N + Q +
Sbjct: 112 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 158
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 159 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 194
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 195 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 240
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 241 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 300
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 301 EELCSDLFRSTLEPVEKAL 319
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound And
Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg Ion-,
And K Ion- Bound State
Length = 392
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ ++ + + D + ++SY+ KA
Sbjct: 60 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 117
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++++L + + Y G Y ++ A ++ + Y N + Q +
Sbjct: 118 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 164
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 165 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 200
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 201 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 246
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 247 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 306
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 307 EELCSDLFRSTLEPVEKAL 325
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
(Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ ++ + + D + ++SY+ KA
Sbjct: 78 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 135
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++++L + + Y G Y ++ A ++ + Y N + Q +
Sbjct: 136 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 182
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 183 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 218
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 219 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 264
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 265 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 324
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 325 EELCSDLFRSTLEPVEKAL 343
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ ++ + + D + ++SY+ KA
Sbjct: 59 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 116
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++++L + + Y G Y ++ A ++ + Y N + Q +
Sbjct: 117 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 163
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 164 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 199
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 200 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 245
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 246 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 305
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 306 EELCSDLFRSTLEPVEKAL 324
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The
Apo Form
Length = 391
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ ++ + + D + ++SY+ KA
Sbjct: 59 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK--GETKA 116
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++++L + + Y G Y ++ A ++ + Y N + Q +
Sbjct: 117 FYPEEISSMVLTKMK------EIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 163
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 164 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 199
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 200 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 245
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 246 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 305
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 306 EELCSDLFRSTLEPVEKAL 324
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS + R+V +LR A E LS+ +N+ ++SLY+G+DF+ +++RARFE L
Sbjct: 272 KHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYTSITRARFEELCA 331
Query: 306 GLLTSFVQPCMHVL 319
L ++P L
Sbjct: 332 DLFRGTLEPVEKAL 345
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS N+ ++SLY+G+DF+ +++RARFE L L ++P+E L + +
Sbjct: 291 CERAKRTLSSSTQANLEIDSLYEGIDFYTSITRARFEELCADLFRGTLEPVEKALRDAKM 350
Query: 372 THDQI 376
+I
Sbjct: 351 DKAKI 355
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
D +L +GA+DRL++IWD +N+ V L+GH Q+I ++ + P +++GS D +VR+W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 151 SGTHRLEISLT 161
T + ++L+
Sbjct: 194 LRTGQCSLTLS 204
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
I+ L GHE+ + +DY+ GDK L+SG+ DR V+IWD + C TL ++ V
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDK--LVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVA 213
Query: 130 FHP-ELPIVITGSEDGSVRVWHSGTHRL 156
P + + GS D +VRVW S T L
Sbjct: 214 VSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC------FHPELPIVITGSEDGSVR 147
Y++SG+ DR V WD ++ + L+GH ++ +V PE + TGS D R
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383
Query: 148 VW 149
+W
Sbjct: 384 IW 385
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK------------TCVQTLEGHGQ 123
GH+ V V + G ++SG+ DR VK+W+ QN TC T GH
Sbjct: 254 GHKDSVYSVVFTRDGQS--VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 311
Query: 124 NISAVCFHPELPIVITGSEDGSVRVW 149
+ +V +++GS+D V W
Sbjct: 312 FVLSVATTQNDEYILSGSKDRGVLFW 337
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 125 ISAVCFHPELPIVITGSEDGSVRVW 149
I +VCF P+ + TG+ED +R+W
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW 150
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
Length = 543
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 554
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 139/319 (43%), Gaps = 53/319 (16%)
Query: 1 KSRLISQAKNTIIKNKRALNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKA 60
K+++ +NT+ KR + + + +++ + + + D + ++SY+ KA
Sbjct: 56 KNQVALNPQNTVFDAKRLIGRKFGDPVVQSDXKHWPFQVINDGDKPKVQVSYK--GETKA 113
Query: 61 FNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
F P ++++ +L K + Y G Y ++ A ++ + Y N + Q +
Sbjct: 114 FYPEEISSXVLT------KXKEIAEAYLG----YPVTNA---VITVPAYFNDSQRQATKD 160
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVA 180
G VI G +R+ + T ++ YGL+R KG NV
Sbjct: 161 AG--------------VIAGLN--VLRIINEPT---AAAIAYGLDRTG-----KGERNVL 196
Query: 181 IGYDEGSVLLKVGREEPAVSMDVNGCKIIWARHSEVQQANLKTMPEVFENITAGVVLTLS 240
I +D G V +++D +G + A + E F+N +V
Sbjct: 197 I-FDLGGGTFDVS----ILTID-DGIFEVKATAGDTHLGG-----EDFDN---RLVNHFV 242
Query: 241 VHVTIKYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARF 300
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARF
Sbjct: 243 EEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARF 302
Query: 301 ESLIGGLLTSFVQPCMHVL 319
E L L S ++P L
Sbjct: 303 EELCSDLFRSTLEPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SL++G+DF+ +++RARFE L L S ++P+E L + +
Sbjct: 267 CERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKAQI 331
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 107
Y I+ + ++ ++ I L+ L GH+ GV + Y HGG L+SG+ DR V++W
Sbjct: 134 YVITGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188
Query: 108 DYQNKTCVQTLEGHGQNISA--VCFHPELPIVITGSEDGSVRVW 149
D + C EGH + + + + ++TGS D ++ VW
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE 133
L GH V V G ++SG+ D + +WD C+ L GH I + + E
Sbjct: 266 LRGHMASVRTV----SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 134 LPIVITGSEDGSVRVW 149
I+ S D ++R+W
Sbjct: 322 RKRCISASMDTTIRIW 337
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 71 LKTLY---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISA 127
+K LY GH + Y H ++ IS + D ++IWD +N + TL+GH +
Sbjct: 300 MKCLYILSGHTDRIYSTIYDH--ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 357
Query: 128 VCFHPELPIVITGSEDGSVRVWHSGTHRLEIS 159
+ + +++ + DGS+R W + + + S
Sbjct: 358 LRLSDKF--LVSAAADGSIRGWDANDYSRKFS 387
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 25/97 (25%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIW---------------DY--------QNK 112
GH V C+D + Y+++G+ D + +W DY +N
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
V L GH ++ V H IV++GS D ++ VW
Sbjct: 261 YFVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVW 295
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 103 LVKIWDYQNKTCVQ--TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL 160
++K W Y K Q TL GH ++ C E VITG++D +RV+ S + + L
Sbjct: 101 ILKNW-YNPKFVPQRTTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL 158
Query: 161 TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV-NGC 206
+ VW A+ Y G +L+ + D+ GC
Sbjct: 159 SGHDGGVW-----------ALKYAHGGILVSGSTDRTVRVWDIKKGC 194
>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
Mutant With Cys 17 Replaced By Lys
Length = 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 48 YKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 107
Y I+ + ++ ++ I L+ L GH+ GV + Y HGG L+SG+ DR V++W
Sbjct: 134 YVITGADDKXIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188
Query: 108 DYQNKTCVQTLEGHGQNISA--VCFHPELPIVITGSEDGSVRVW 149
D + C EGH + + + + ++TGS D ++ VW
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE 133
L GH V V G ++SG+ D + +WD C+ L GH I + + E
Sbjct: 266 LRGHXASVRTV----SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE 321
Query: 134 LPIVITGSEDGSVRVW 149
I+ S D ++R+W
Sbjct: 322 RKRCISASXDTTIRIW 337
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
L L GH + Y H ++ IS + D ++IWD +N TL+GH + +
Sbjct: 303 LYILSGHTDRIYSTIYDH--ERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Query: 131 HPELPIVITGSEDGSVRVWHSGTHRLEIS 159
+ +++ + DGS+R W + + + S
Sbjct: 361 SDKF--LVSAAADGSIRGWDANDYSRKFS 387
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 25/97 (25%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIW---------------DY--------QNK 112
GH V C+D + Y+++G+ D + +W DY +N
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 113 TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
V L GH ++ V H IV++GS D ++ VW
Sbjct: 261 YFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVW 295
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 103 LVKIWDYQNKTCVQ--TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL 160
++K W Y K Q TL GH ++ C E VITG++D +RV+ S + + L
Sbjct: 101 ILKNW-YNPKFVPQRTTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQL 158
Query: 161 TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMDV-NGC 206
+ VW A+ Y G +L+ + D+ GC
Sbjct: 159 SGHDGGVW-----------ALKYAHGGILVSGSTDRTVRVWDIKKGC 194
>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular
Chaperone Hsc70. Ii. Potassium Binds Specifically In The
Atpase Active Site
pdb|1NGI|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|1NGJ|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|3HSC|A Chain A, Three-Dimensional Structure Of The Atpase Fragment Of A
70k Heat-Shock Cognate Protein
Length = 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
1nge 3
Length = 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 267 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 326
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 327 DLFRGTLDPVEKAL 340
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 286 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 345
Query: 372 THDQI 376
QI
Sbjct: 346 DKSQI 350
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|A Chain A, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 381
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|3CQX|A Chain A, Chaperone Complex
pdb|3CQX|B Chain B, Chaperone Complex
Length = 386
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 253 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 312
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 313 DLFRGTLDPVEKAL 326
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 272 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 331
Query: 372 THDQI 376
QI
Sbjct: 332 DKSQI 336
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|2QW9|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QWL|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWL|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWM|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
pdb|2QWM|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
Length = 394
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 245 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 304
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 305 DLFRGTLDPVEKAL 318
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 264 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 323
Query: 372 THDQI 376
QI
Sbjct: 324 DKSQI 328
>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
pdb|2QWO|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 394
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 248 KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 307
Query: 306 GLLTSFVQPCMHVL 319
L + P L
Sbjct: 308 DLFRGTLDPVEKAL 321
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 372 THDQI 376
QI
Sbjct: 327 DKSQI 331
>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|D Chain D, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 191
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DIS + R+V +LR A E LS+ +++ ++SL++G+DF+ +++RARFE L
Sbjct: 68 KHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCS 127
Query: 306 GLLTSFVQPCMHVL 319
L S ++P L
Sbjct: 128 DLFRSTLEPVEKAL 141
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SL++G+DF+ +++RARFE L L S ++P+E L + +
Sbjct: 87 CERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKL 146
Query: 372 THDQI 376
QI
Sbjct: 147 DKAQI 151
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
L L GH V CV Y D ++SGA D +VK+WD + +TC+ TL+GH + ++ F
Sbjct: 232 LHVLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287
Query: 131 HPELPIVITGSEDGSVRVWHSGT----HRL--EISLTYGLE 165
+ V++GS D S+RVW T H L SLT G+E
Sbjct: 288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
L+TL GH GV + +ISG+ DR +K+W+ + C+ TL GH + C
Sbjct: 152 LRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CM 205
Query: 131 HPELPIVITGSEDGSVRVW 149
H V++GS D ++RVW
Sbjct: 206 HLHEKRVVSGSRDATLRVW 224
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 95 LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV-CFHPELPIVITGSEDGSVRVW 149
L+SG D VKIWD + C+QTL+G ++ SAV C VIT S+DG+V++W
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV-C 129
+ TLYGH V C+ + + ++SG+ D +++WD + C+ L GH ++AV C
Sbjct: 192 IHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGH---VAAVRC 244
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTI 170
+ V++G+ D V+VW T +L RV+++
Sbjct: 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 72 KTLYGHEKGV-NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCF 130
K L GH+ V C+ + G++ ++SG+DD +K+W C++TL GH + +
Sbjct: 112 KVLKGHDDHVITCLQFC--GNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 167
Query: 131 HPELPIVITGSEDGSVRVWHSGT 153
I+I+GS D +++VW++ T
Sbjct: 168 RDN--IIISGSTDRTLKVWNAET 188
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 71 LKTLYG---HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 118
L+TL G H+ V C+ + +K ++I+ +DD VK+WD + ++ L
Sbjct: 352 LQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2)
From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DI + R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 251 KHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNA 310
Query: 306 GLLTSFVQPCMHVL 319
L ++P L
Sbjct: 311 DLFRGTLEPVEKAL 324
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L ++P+E L + +
Sbjct: 270 CERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKL 329
Query: 372 THDQINK 378
QI +
Sbjct: 330 DKGQIQE 336
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2
(Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K++ DI + R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L
Sbjct: 269 KHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNA 328
Query: 306 GLLTSFVQPCMHVL 319
L ++P L
Sbjct: 329 DLFRGTLEPVEKAL 342
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L ++P+E L + +
Sbjct: 288 CERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKL 347
Query: 372 THDQINK 378
QI +
Sbjct: 348 DKGQIQE 354
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
DIS++ R+V +LR A E LS+ +++ ++SLY+G+DF+ +++RARFE L L
Sbjct: 249 DISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFR 308
Query: 310 SFVQPCMHVL 319
+ P L
Sbjct: 309 GTLDPVEKAL 318
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSS---NVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS ++ ++SLY+G+DF+ +++RARFE L L + P+E L + +
Sbjct: 264 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 323
Query: 372 THDQI 376
QI
Sbjct: 324 DKSQI 328
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
+ L GH VN VD+ D Y++S + DR +K+W+ V+TL GH + I+ + +
Sbjct: 250 RVLVGHRAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 132 PELPIVITGSEDGSVRVW 149
L V++GS D ++R+W
Sbjct: 306 DRL--VVSGSSDNTIRLW 321
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 58/103 (56%), Gaps = 8/103 (7%)
Query: 47 EYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 106
+Y +S +K +N ++TL GH++G+ C+ Y D+ ++SG+ D +++
Sbjct: 267 KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DR-LVVSGSSDNTIRL 320
Query: 107 WDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
WD + C++ LEGH + + + F + +++G+ DG ++VW
Sbjct: 321 WDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVW 361
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 79 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVI 138
KGV C+ Y D ++SG D +KIWD C + L GH S +C + ++I
Sbjct: 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--SVLCLQYDERVII 187
Query: 139 TGSEDGSVRVWHSGTHRLEISLTYGLERV 167
TGS D +VRVW T + +L + E V
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
+ L GH V C+ Y D+ +I+G+ D V++WD + TL H + + + F+
Sbjct: 167 RILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222
Query: 132 PELPIVITGSEDGSVRVW 149
+ ++T S+D S+ VW
Sbjct: 223 NGM--MVTCSKDRSIAVW 238
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY---------QNKTCVQTLEGH 121
L+ L GHE+ V C+ + D ++SGA D +K+WD C++TL H
Sbjct: 329 LRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 384
Query: 122 GQNISAVCFHPELPIVITGSEDGSVRVW 149
+ + F E IV + S D ++ +W
Sbjct: 385 SGRVFRLQFD-EFQIV-SSSHDDTILIW 410
>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN
pdb|3QML|A Chain A, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|B Chain B, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 390
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K+ +D+SD+++++AKL+ AE LS+ S+ + ++S DG+D ++RA+FE L
Sbjct: 257 KHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNL 316
Query: 306 GLLTSFVQPCMHVL--STLQSSNV 327
L ++P VL S L+ +V
Sbjct: 317 DLFKKTLKPVEKVLQDSGLEKKDV 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
+ LS+ S+ + ++S DG+D ++RA+FE L L ++P+E VL S +
Sbjct: 276 AEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGL 335
Query: 372 THDQIN 377
++
Sbjct: 336 EKKDVD 341
>pdb|3QFU|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXED WITH
ADP
Length = 394
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K+ +D+SD+++++AKL+ AE LS+ S+ + ++S DG+D ++RA+FE L
Sbjct: 261 KHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNL 320
Query: 306 GLLTSFVQPCMHVL--STLQSSNV 327
L ++P VL S L+ +V
Sbjct: 321 DLFKKTLKPVEKVLQDSGLEKKDV 344
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
+ LS+ S+ + ++S DG+D ++RA+FE L L ++P+E VL S +
Sbjct: 280 AEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGL 339
Query: 372 THDQIN 377
++
Sbjct: 340 EKKDVD 345
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
Length = 384
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
D+ +R+V KLR E LS+ + + +ES Y+G DF ++RA+FE L L
Sbjct: 254 DVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFR 313
Query: 310 SFVQPCMHVL--STLQSSNV 327
S ++P VL S L+ S++
Sbjct: 314 STMKPVQKVLEDSDLKKSDI 333
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
V+ LS+ + + +ES Y+G DF ++RA+FE L L S ++P++ VL S++
Sbjct: 269 VEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDL 328
Query: 372 THDQINK 378
I++
Sbjct: 329 KKSDIDE 335
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
D+ +R+V KLR E LS+ + + +ES Y+G DF ++RA+FE L L
Sbjct: 275 DVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFR 334
Query: 310 SFVQPCMHVL--STLQSSNV 327
S ++P VL S L+ S++
Sbjct: 335 STMKPVQKVLEDSDLKKSDI 354
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 312 VQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
V+ LS+ + + +ES Y+G DF ++RA+FE L L S ++P++ VL S++
Sbjct: 290 VEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDL 349
Query: 372 THDQINK 378
I++
Sbjct: 350 KKSDIDE 356
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
DIS++ R+V +L A E LS+ +++ ++SLY+G+DF+ +++RARFE L L
Sbjct: 249 DISENKRAVRRLATACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFR 308
Query: 310 SFVQPCMHVL 319
+ P L
Sbjct: 309 GTLDPVEKAL 318
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 308 LTSFVQPCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLS 367
L + + LS+ +++ ++SLY+G+DF+ +++RARFE L L + P+E L
Sbjct: 260 LATACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALR 319
Query: 368 RSNITHDQI 376
+ + QI
Sbjct: 320 DAKLDKSQI 328
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
K+ D+S + R++ +LR A E LS+ + + ++SL++G+DF+ +++RARFE L
Sbjct: 268 KHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCS 327
Query: 306 GLLTSFVQPCMHVL 319
L S ++P L
Sbjct: 328 DLFRSTLEPVEKAL 341
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 315 CMHVLSTLQSSN---VFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS + ++SL++G+DF+ +++RARFE L L S ++P+E L + +
Sbjct: 287 CERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKL 346
Query: 372 THDQI 376
QI
Sbjct: 347 DKAQI 351
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI 136
H + VNC + + + L +G++D +K+WD K C T+ GH +++ F P+ +
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 137 VITGSEDGSVRVW 149
+ + S DG++R+W
Sbjct: 758 LASCSADGTLRLW 770
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 19 LNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE 78
L++E D+E IV+ +K ++ K ++V F+ I + L+ + GH
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAK------NKVLLFD-IHTSGLLAEIHTGHH 840
Query: 79 KGVNCVDYYHGGDKPY---LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
+ D+ PY + V++W+ ++ V GH + V F P+
Sbjct: 841 STIQYCDF-----SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895
Query: 136 IVITGSEDGSVRVWHS 151
+T S+D ++RVW +
Sbjct: 896 SFLTASDDQTIRVWET 911
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
GH+K V + + D LIS ++D ++++W++Q V L+ H + + +
Sbjct: 1001 GHKKAVRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-S 1056
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLT 161
+++ S DG+V+VW+ T R+E T
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFT 1082
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
D S + D+ KIW + + + L+GH + F + ++ TG ++G +R+W+
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 23 LTETDIETI-VRETKVDITTNKDMI---EYKISYQES-SRVKAFNPIQVATLIL----KT 73
LT +D +TI V ETK + N ++ E + +QE+ + V A + I+ LI +
Sbjct: 898 LTASDDQTIRVWETK-KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956
Query: 74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE 133
Y E V+C Y+ G +D +KI + N + GH + + + F +
Sbjct: 957 DYLPEAQVSCCCL--SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014
Query: 134 LPIVITGSEDGSVRVWHSGT 153
+I+ SED ++VW+ T
Sbjct: 1015 GKTLISSSEDSVIQVWNWQT 1034
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI 136
H + VNC + + + L +G++D +K+WD K C T+ GH +++ F P+ +
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 764
Query: 137 VITGSEDGSVRVW 149
+ + S DG++R+W
Sbjct: 765 LASCSADGTLRLW 777
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 19 LNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE 78
L++E D+E IV+ +K ++ K ++V F+ I + L+ + GH
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAK------NKVLLFD-IHTSGLLAEIHTGHH 847
Query: 79 KGVNCVDYYHGGDKPY---LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
+ D+ PY + V++W+ ++ V GH + V F P+
Sbjct: 848 STIQYCDF-----SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 902
Query: 136 IVITGSEDGSVRVWHS 151
+T S+D ++RVW +
Sbjct: 903 SFLTASDDQTIRVWET 918
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
GH+K V + + D LIS ++D ++++W++Q V L+ H + + +
Sbjct: 1008 GHKKAVRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-S 1063
Query: 136 IVITGSEDGSVRVWHSGTHRLEISLT 161
+++ S DG+V+VW+ T R+E T
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFT 1089
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
D S + D+ KIW + + + L+GH + F + ++ TG ++G +R+W+
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 23 LTETDIETI-VRETKVDITTNKDMI---EYKISYQES-SRVKAFNPIQVATLIL----KT 73
LT +D +TI V ETK + N ++ E + +QE+ + V A + I+ LI +
Sbjct: 905 LTASDDQTIRVWETK-KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 963
Query: 74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPE 133
Y E V+C Y+ G +D +KI + N + GH + + + F +
Sbjct: 964 DYLPEAQVSCCCL--SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1021
Query: 134 LPIVITGSEDGSVRVWHSGT 153
+I+ SED ++VW+ T
Sbjct: 1022 GKTLISSSEDSVIQVWNWQT 1041
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
D +SGA D K+WD + C QT GH +I+A+CF P TGS+D + R+
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 263
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+ + L GH ++C + D +++ + D +WD + T GH ++ ++
Sbjct: 146 VSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 202
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
P+ + ++G+ D S ++W + T + I N A G D+ +
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 190 L 190
L
Sbjct: 263 L 263
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 75 YGHEK---GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
Y H+ G+ V + G L++G DD +WD L GH +S +
Sbjct: 275 YSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 332
Query: 132 PELPIVITGSEDGSVRVWH 150
+ V TGS D +++W+
Sbjct: 333 DDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
D +SGA D K+WD + C QT GH +I+A+CF P TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+ + L GH ++C + D +++ + D +WD + T GH ++ ++
Sbjct: 135 VSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
P+ + ++G+ D S ++W + T + I N A G D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 190 L 190
L
Sbjct: 252 L 252
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 75 YGHEK---GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
Y H+ G+ V + G L++G DD +WD L GH +S +
Sbjct: 264 YSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 132 PELPIVITGSEDGSVRVWH 150
+ V TGS D +++W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
D +SGA D K+WD + C QT GH +I+A+CF P TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+ + L GH ++C + D +++ + D +WD + T GH ++ ++
Sbjct: 135 VSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
P+ + ++G+ D S ++W + T + I N A G D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 190 L 190
L
Sbjct: 252 L 252
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 75 YGHEK---GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
Y H+ G+ V + G L++G DD +WD L GH +S +
Sbjct: 264 YSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 132 PELPIVITGSEDGSVRVWH 150
+ V TGS D +++W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
D +SGA D K+WD + C QT GH +I+A+CF P TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+ + L GH ++C + D +++ + D +WD + T GH ++ ++
Sbjct: 135 VSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
P+ + ++G+ D S ++W + T + I N A G D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 190 L 190
L
Sbjct: 252 L 252
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 75 YGHEK---GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
Y H+ G+ V + G L++G DD +WD L GH +S +
Sbjct: 264 YSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 132 PELPIVITGSEDGSVRVWH 150
+ V TGS D +++W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
D +SGA D K+WD + C QT GH +I+A+CF P TGS+D + R+
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+ + L GH ++C + D +++ + D +WD + T GH ++ ++
Sbjct: 135 VSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191
Query: 130 FHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVL 189
P+ + ++G+ D S ++W + T + I N A G D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 190 L 190
L
Sbjct: 252 L 252
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 75 YGHEK---GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
Y H+ G+ V + G L++G DD +WD L GH +S +
Sbjct: 264 YSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 132 PELPIVITGSEDGSVRVWH 150
+ V TGS D +++W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+L++ +GH V C+D +SG D+ +WD ++ CVQ E H ++++V
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 130 FHPELPIVITGSEDGSVRVW 149
++P +GS+D + R++
Sbjct: 248 YYPSGDAFASGSDDATCRLY 267
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 80 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVIT 139
G + VD+ G L +G +D + +WD + V L GH +S + P+ +
Sbjct: 286 GASSVDFSLSG--RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 140 GSEDGSVRVW 149
GS D ++RVW
Sbjct: 344 GSWDHTLRVW 353
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 116 QTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSLKG 175
+TL+GHG + + + + +++ S+DG V VW S T E ++T + W ++
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT--MPCTWVMACAYA 115
Query: 176 SNNVAI 181
+ AI
Sbjct: 116 PSGCAI 121
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPI 136
H V+CV + D P ++SG D LVK+WD V L+GH +++V P+ +
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 137 VITGSEDGSVRVW 149
+ +DG R+W
Sbjct: 211 CASSDKDGVARLW 223
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
+ L GH V+ V + G+ + +S + D +++W+ QN C GH +++ +V F
Sbjct: 61 RRLEGHSAFVSDVALSNNGN--FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 132 PELPIVITGSEDGSVRVWH 150
P+ +++G D ++RVW+
Sbjct: 119 PDNRQIVSGGRDNALRVWN 137
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE--GHGQNISAVCFHPE 133
GH K V V + D ++SG D +++W+ + + C+ TL H +S V F P
Sbjct: 107 GHTKDVLSVAFSP--DNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPS 163
Query: 134 L--PIVITGSEDGSVRVWHSGTHRLEISL 160
L P++++G D V+VW T RL L
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 57 RVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 116
+VK +N + ++ T H + VNC + + L +G+ D +K+WD K C
Sbjct: 686 KVKIWNSM--TGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
T+ GH +++ F P+ ++ + S DG++++W
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
I ++ + H+K V + + D+ LIS +DD +++W++Q C+ L GH + +
Sbjct: 1001 IFQSRFQHKKTVWHIQF--TADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFR 1057
Query: 130 FHPELPIVITGSEDGSVRVWH 150
+++ S DG+V+VW+
Sbjct: 1058 LLKN-SRLLSWSFDGTVKVWN 1077
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
K H+ V D H K S + D+ KIW + + L GH + F
Sbjct: 1085 KDFVCHQGTVLSCDISHDATK--FSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS 1142
Query: 132 PELPIVITGSEDGSVRVWH 150
+ ++ TG ++G +R+W+
Sbjct: 1143 VDSTLLATGDDNGEIRIWN 1161
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 19 LNTELTETDIETIVRETKVDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHE 78
LN E + D+E IV+ + M+ K +++ F+ I + L+ + GH
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAK------NKIFLFD-IHTSGLLGEIHTGHH 846
Query: 79 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVI 138
+ D+ + V++W+ +++ V GH + V F P+ +
Sbjct: 847 STIQYCDF--SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904
Query: 139 TGSEDGSVRVWHS 151
T S+D ++R+W +
Sbjct: 905 TSSDDQTIRLWET 917
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP 135
GH V+CV + +P ++S + D+ VK+W+ N TL GH +S V P+
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 136 IVITGSEDGSVRVW 149
+ +G +DG V +W
Sbjct: 575 LCASGGKDGVVLLW 588
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLI 96
V + +K +I +K++ + KA+ Q + L GH V D D + +
Sbjct: 399 VSASRDKSIILWKLTKDD----KAYGVAQ------RRLTGHSHFVE--DVVLSSDGQFAL 446
Query: 97 SGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS 151
SG+ D +++WD + GH +++ +V F + +++ S D ++++W++
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3KVG|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3L4I|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L4I|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L6Q|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
pdb|3L6Q|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
Length = 400
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 249 LDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLL 308
+D++ + R++ +LR E LS+ + + ++SLY+G+D+ +SRARFE L
Sbjct: 268 MDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYF 327
Query: 309 TSFVQPCMHVL 319
+ + P VL
Sbjct: 328 RATLAPVEKVL 338
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 315 CMHVLSTLQSSN---VFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
C TL SS + ++SLY+G+D+ +SRARFE L + + P+E VL + +
Sbjct: 284 CERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGM 343
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRV 148
D YL SGA D ++ I+D + TLEGH I ++ F P+ +++T S+DG +++
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Query: 95 LISGADDRLVKIWDYQNK--TCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
+++G+ D LVK+W ++++ +LEGH + +V LPI + S D +R+W
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 153 THRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSV-LLKVGREEPAVSMDVNGCKIIWA 211
+ S+ G WT++ S +A G G V + V + S+D G I+
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170
Query: 212 RHSE----VQQANLKTMPEVFENITAGVVLTLSVHV 243
+S + + + +F+ T ++ TL H
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 62 NPIQVAT-LILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 120
N +AT +L TL GH + + + D L++ +DD +KI+D Q+ TL G
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTF--SPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Query: 121 HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTIS-SLKGSNNV 179
H + V F P+ ++ S D SV+VW GT + ++VW + + GS V
Sbjct: 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV 306
Query: 180 AIGYDE 185
++G D+
Sbjct: 307 SVGDDQ 312
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
+L GH+ GV VD H P S + D +++WD +N +++++ + + F P
Sbjct: 75 SLEGHQLGVVSVDISH--TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132
Query: 133 ELPIVITGSEDGSVRVWHSGTHRLEISL 160
+ + TG+ G V ++ + + E SL
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSL 160
>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
pdb|4GNI|B Chain B, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
Length = 409
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 250 DISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLT 309
D ++ RS+AKLR AE+ LS +++ VESL DGLDF ++R R+E++ +
Sbjct: 266 DPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFE 325
Query: 310 SF 311
F
Sbjct: 326 GF 327
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 317 HVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNI 371
LS +++ VESL DGLDF ++R R+E++ + F + +E + ++ +
Sbjct: 286 RALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGL 340
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY----QNKTCVQTLEGHGQNI 125
+L + GHE V V + + G YL + + D+ V IW+ + C+ L+ H Q++
Sbjct: 99 LLAIIEGHENEVKGVAWSNDG--YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 126 SAVCFHPELPIVITGSEDGSVRVW 149
V +HP ++ + S D +VR+W
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIW 180
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 95 LISGADDRLVKIW-DYQNK-TCVQTLEGHGQNISAVCFHPELPI--VITGSEDGSVRVW 149
L S + D V+IW DY + CV L GH + + F + + +GS+D +VRVW
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 50 ISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 109
+S +K +N + V ++ H + V+CV + P ++S D+LVK+W+
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW--HSGTHRLEI-------SL 160
N GH ++ V P+ + +G +DG +W + G H + +L
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 161 TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE 196
+ R W ++ S + I EG +++ ++E
Sbjct: 240 CFSPNRYWLCAATGPS--IKIWDLEGKIIVDELKQE 273
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
+ L GH V+ D D + +SG+ D +++WD T + GH +++ +V F
Sbjct: 57 RALRGHSHFVS--DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 114
Query: 132 PELPIVITGSEDGSVRVWHS 151
+ +++GS D ++++W++
Sbjct: 115 SDNRQIVSGSRDKTIKLWNT 134
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 50 ISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 109
+S +K +N + V ++ H + V+CV + P ++S D+LVK+W+
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 110 QNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW--HSGTHRLEI-------SL 160
N GH ++ V P+ + +G +DG +W + G H + +L
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 161 TYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREE 196
+ R W ++ S + I EG +++ ++E
Sbjct: 263 CFSPNRYWLCAATGPS--IKIWDLEGKIIVDELKQE 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
+ L GH V+ D D + +SG+ D +++WD T + GH +++ +V F
Sbjct: 80 RALRGHSHFVS--DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137
Query: 132 PELPIVITGSEDGSVRVWHS 151
+ +++GS D ++++W++
Sbjct: 138 SDNRQIVSGSRDKTIKLWNT 157
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
KY++DI ++ ++ ++ AAE VLS ++ VES+ + +D +SR E L+
Sbjct: 251 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVK 310
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
LL +P L+ + S
Sbjct: 311 PLLERVTEPVTKALAQAKLS 330
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQIN 377
VLS ++ VES+ + +D +SR E L+ LL +P+ L+++ ++ ++++
Sbjct: 276 VLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVD 335
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
KY++DI ++ ++ ++ AAE VLS ++ VES+ + +D +SR E L+
Sbjct: 254 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVK 313
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
LL +P L+ + S
Sbjct: 314 PLLERVTEPVTKALAQAKLS 333
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQIN 377
VLS ++ VES+ + +D +SR E L+ LL +P+ L+++ ++ ++++
Sbjct: 279 VLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVD 338
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
KY++DI ++ ++ ++ AAE VLS ++ VES+ + +D +SR E L+
Sbjct: 252 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVXNDVDVSSQLSREELEELVK 311
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
LL +P L+ + S
Sbjct: 312 PLLERVTEPVTKALAQAKLS 331
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQIN 377
VLS ++ VES+ + +D +SR E L+ LL +P+ L+++ ++ ++++
Sbjct: 277 VLSANTNAPFSVESVXNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVD 336
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
KY++DI ++ ++ ++ AAE VLS ++ VES+ + +D +SR E L+
Sbjct: 252 KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVK 311
Query: 306 GLLTSFVQPCMHVLSTLQSS 325
LL +P L+ + S
Sbjct: 312 PLLERVTEPVTKALAQAKLS 331
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 318 VLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIGGLLTSFVQPIEDVLSRSNITHDQIN 377
VLS ++ VES+ + +D +SR E L+ LL +P+ L+++ ++ ++++
Sbjct: 277 VLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVD 336
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 26 TDIETIVRETKVDITTNK--DMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNC 83
+D + VR + + + NK Y S R+K +N I T HE VN
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN---TNFQIRYTFKAHESNVNH 218
Query: 84 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSED 143
+ G Y+ +G D+ + IWD N T Q G I+ + F+P+L V G++
Sbjct: 219 LSISPNGK--YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ 276
Query: 144 G 144
G
Sbjct: 277 G 277
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 72 KTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFH 131
K L GH V+ D + + IS + D+ +++WD + T + GH + +V F
Sbjct: 70 KALTGHNHFVS--DLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 132 PELPIVITGSEDGSVRVWH 150
P+ +++ + +++W+
Sbjct: 128 PDNRQILSAGAEREIKLWN 146
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 91 DKPYLISGADDRLVKIW----DYQNKTCV---QTLEGHGQNISAVCFHPELPIVITGSED 143
D P LISG+ D+ V IW + QN + L GH +S + E I+ S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 144 GSVRVW 149
++R+W
Sbjct: 98 KTLRLW 103
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 58 VKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 117
VK F+ +++ L GHE V V + H L S + DR V IW +N T ++
Sbjct: 37 VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96
Query: 118 LE--GHGQNISAVCFHPE--LPIVITGSEDGSVRVWHSGTHRLEISLTYGLERVWTISSL 173
E GH ++++VC+ P I+ GS DG++ + LTY E W + +
Sbjct: 97 HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL-----------LTYTGEGQWEVKKI 145
Query: 174 KGSNNVA 180
++ +
Sbjct: 146 NNAHTIG 152
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 95 LISGADDRLVKIWDYQ-NKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT 153
ISG+ D V++WD + V+T GH +I++V F P+ TGS+DG+ R++ T
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 154 -HRLEI 158
H+L++
Sbjct: 281 GHQLQV 286
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 114 CVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHS----GTHRLEISLTYGLE 165
C +TL+GH + ++ + PE +++ S+DG + VW++ TH +++ + +E
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 49 KISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
K S + +FNP + + +TL GH V +D+ +K +++S + D + +W+
Sbjct: 39 KYSKAQGRTAVSFNPTDL--VCCRTLQGHSGKVYSLDWTP--EKNWIVSASQDGRLIVWN 94
Query: 109 YQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
++ H + F P V G D + +++
Sbjct: 95 ALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
VDI MI IS SR K + L TL GH V+ V + D
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
+IS +D++VK W+ GH NI+ + P+ ++ + +DG + +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
+ +L+
Sbjct: 227 AKKAMYTLS 235
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
D Y +S + D+ +++WD Q GH ++ +V + ++I+GS D +++VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
VDI MI IS SR K + L TL GH V+ V + D
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
+IS +D++VK W+ GH NI+ + P+ ++ + +DG + +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
+ +L+
Sbjct: 227 AKKAMYTLS 235
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
D Y +S + D+ +++WD Q GH ++ +V + ++I+GS D +++VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
VDI MI IS SR K + L TL GH V+ V + D
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
+IS +D++VK W+ GH NI+ + P+ ++ + +DG + +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
+ +L+
Sbjct: 227 AKKAMYTLS 235
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
D Y +S + D+ +++WD Q GH ++ +V + ++I+GS D +++VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
VDI MI IS SR K + L TL GH V+ V + D
Sbjct: 113 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
+IS +D++VK W+ GH NI+ + P+ ++ + +DG + +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 153 THRLEISLT 161
+ +L+
Sbjct: 227 AKKAMYTLS 235
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
D Y +S + D+ +++WD Q GH ++ +V + ++I+GS D +++VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 37 VDITTNKDMIEYKISYQESSRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDK 92
VDI MI IS SR K + L TL GH V+ V + D
Sbjct: 107 VDIDKKASMI---IS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSG 152
+IS +D++VK W+ GH NI+ + P+ ++ + +DG + +W+
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 153 THRLEISLT 161
+ +L+
Sbjct: 221 AKKAMYTLS 229
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
D Y +S + D+ +++WD Q GH ++ +V + ++I+GS D +++VW
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 76 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIW--DYQNKTCVQTLEGHGQNISAVCFHPE 133
GH++ V V + G+ YL S + D IW + + CV TLEGH + +V + P
Sbjct: 59 GHQRTVRKVAWSPCGN--YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 134 LPIVITGSEDGSVRVW 149
++ T S D SV VW
Sbjct: 117 GNLLATCSRDKSVWVW 132
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---CVQTLEGHGQNIS 126
+ TL GHE V V + G+ L + + D+ V +W+ + CV L H Q++
Sbjct: 97 CVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 127 AVCFHPELPIVITGSEDGSVRV 148
V +HP ++ + S D +V++
Sbjct: 155 HVVWHPSQELLASASYDDTVKL 176
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 95 LISGADDRLVKIW--DYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
L S + D VK++ + + C TLEGH + ++ F P + + S+D +VR+W
Sbjct: 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 90 GDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
D Y +S + D+ +++WD Q GH ++ +V + +I+GS D +++VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 56 SRVKAFNPIQVATLILKTLYGHEKGVNCV----DYYHGGDKPYLISGADDRLVKIWDYQN 111
SR K + L TL GH V+ V + D +IS +D+ VK W+
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 112 KTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLT 161
GH NI+ + P+ ++ + +DG + +W+ + +L+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS 235
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 95 LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT 153
LIS + D +KIW ++ + +TL GH ++ + V++ S DG++R+W GT
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 209
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 95 LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGT 153
LIS + D +KIW ++ + +TL GH ++ + V++ S DG++R+W GT
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
D + IS ++D L+K+ D ++T EGH + + P IV G ED +VR+W
Sbjct: 194 DDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWS 252
Query: 151 SGTHRLEISLTYGLERVWTI 170
L+ +T +W++
Sbjct: 253 KENGSLKQVITLPAISIWSV 272
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 117 TLEGHGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYGLE 165
TL GH N+ ++ F +VI+GS D + +VW G SL Y L+
Sbjct: 99 TLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWKEG------SLVYNLQ 139
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAV---CF 130
L GHE+ + V Y GD L S + D +W N + TL+GH I ++ CF
Sbjct: 28 LTGHERPLTQVKYNKEGD--LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 131 HPELPIVITGSEDGSVRVW 149
+TGS D S+++W
Sbjct: 86 ---TKYCVTGSADYSIKLW 101
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 94 YLISGADDRLVKIWDYQNKTCVQT 117
Y ++G+ D +K+WD N CV T
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVAT 111
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVWH 150
D ++I G + ++ KT L GH IS + F+ ++++ S+DG++R+WH
Sbjct: 217 DDKFVIPGPKGAIF-VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Query: 151 SGTHRLEISLTYGLERVWTISSLKGSNNVAIGYDEGSVLLKVGREEPAVSMD-VNGCKII 209
G + + YG + +S G + V +GSV L ++ +++ V+G I
Sbjct: 276 GGNGNSQ-NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334
Query: 210 WARHSEVQQ 218
R S+ Q
Sbjct: 335 AGRISQDGQ 343
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 18 ALNTELTETDIETIVRETKVDITTNKDMIE-YKISYQESSRVKAFNPIQVATLILKTLYG 76
+ TE TD+ V E + + ++ +E ++I +ES V F Y
Sbjct: 90 GVQTEAGVTDV-AWVSEKGILVASDSGAVELWEILEKESLLVNKF-----------AKYE 137
Query: 77 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP-ELP 135
H+ V + + G + +SG D VK+WD K +++ H ++ V P +
Sbjct: 138 HDDIVKTLSVFSDGTQ--AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195
Query: 136 IVITGSEDGSVRVW 149
I ++ EDG + +W
Sbjct: 196 IFLSCGEDGRILLW 209
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 64 IQVATLILKTL-YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHG 122
++ A L+TL GH+KG+ +D+ H D+ L+S D V +W+ ++ + G
Sbjct: 247 LRNANTPLQTLNQGHQKGILSLDWCH-QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305
Query: 123 QNISAVCFHPELP-IVITGSEDGSVRV 148
F PE P + S D + V
Sbjct: 306 NWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHS 151
P L +++I + C++ GHG I+ + FHP P ++++ S+D ++R+W+
Sbjct: 81 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
Query: 152 GTHRLEISLTYGLE 165
T L +++ G+E
Sbjct: 141 QTDTL-VAIFGGVE 153
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHS 151
P L +++I + C++ GHG I+ + FHP P ++++ S+D ++R+W+
Sbjct: 85 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
Query: 152 GTHRLEISLTYGLE 165
T L +++ G+E
Sbjct: 145 QTDTL-VAIFGGVE 157
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHS 151
P L +++I + C++ GHG I+ + FHP P ++++ S+D ++R+W+
Sbjct: 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
Query: 152 GTHRLEISLTYGLE 165
T L +++ G+E
Sbjct: 146 QTDTL-VAIFGGVE 158
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHS 151
P L +++I + C++ GHG I+ + FHP P ++++ S+D ++R+W+
Sbjct: 85 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
Query: 152 GTHRLEISLTYGLE 165
T L +++ G+E
Sbjct: 145 QTDTL-VAIFGGVE 157
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 93 PYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVWHS 151
P L +++I + C++ GHG I+ + FHP P ++++ S+D ++R+W+
Sbjct: 122 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
Query: 152 GTHRLEISLTYGLE 165
T L +++ G+E
Sbjct: 182 QTDTL-VAIFGGVE 194
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 104 VKIWDYQNKTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSVRVW 149
V++ D ++ +C L+GH Q I AV + P I+ T S D V++W
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 74 LYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT-CVQTLE------------- 119
L GH + + V + D + AD R VK+WD + + C+ TL+
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 120 --GHGQNISAVCFHPELPIVITGSEDGSVRVWHS 151
H ++ +CF + ++T D +R+W+S
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 95 LISGADDRLVKIWDYQN-------KTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSV 146
+ SG++D V +W+ + + V TLEGH + + V +HP ++++ D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 147 RVWHSGTHRLEISL 160
VW GT ++L
Sbjct: 157 LVWDVGTGAAVLTL 170
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL--EGHGQNISA 127
++ TL GHE V VD+ H L S + D V IW +N Q H ++++
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNS 104
Query: 128 VCFHPEL--PIVITGSEDGSVRV 148
V + P P+++ S DG V V
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSV 127
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 27/150 (18%)
Query: 76 GHEKGVNCVDYY---------HGGDKP--YLISGADDRLVKIWDY----QNKTCVQTLEG 120
H GVN + H G K ++G D LVKIW Y Q TLEG
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
Query: 121 HGQNISAVCFHPELPI---VITGSEDGSVRVWHSGTHRLEISLTYGLER-----VWTIS- 171
H + V + P + + + + S+D + +W + T E +W S
Sbjct: 203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262
Query: 172 SLKGSNNVAIGYDEGSVLLK---VGREEPA 198
SL G+ G D L K G+ EPA
Sbjct: 263 SLSGNVLALSGGDNKVTLWKENLEGKWEPA 292
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 52 YQESSRVKAFNPIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 111
YQ+ S VK N + + LK +E V + + +K L++ + V I+D +
Sbjct: 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVR-MRAFVNEEKSLLVALTNLSRVIIFDIRT 201
Query: 112 KTCVQTLEG---HGQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISLTYG 163
+Q +E HG +S++C E ++I G+ G + +W + L S ++G
Sbjct: 202 LERLQIIENSPRHGA-VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG 255
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 59 KAFNPIQ----------VATLILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 108
K F PIQ + ++ TL +E G+ PYLI+G+D ++KIW+
Sbjct: 33 KEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWN 92
Query: 109 YQ 110
+
Sbjct: 93 LK 94
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 108 DYQNKTCVQTLEGHGQNISAVCFHP-ELPIVITGSEDGSVRVWH 150
+ + K +E +I++ P E P +ITGS+ G +++W+
Sbjct: 49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWN 92
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL--EGHGQNISA 127
++ TL GHE V VD+ H L S + D V IW +N Q H ++++
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNS 104
Query: 128 VCFHPEL--PIVITGSEDGSVRV 148
V + P P+++ S DG V V
Sbjct: 105 VQWAPHEYGPMLLVASSDGKVSV 127
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 85 DYYHGGDKP--YLISGADDRLVKIWDY----QNKTCVQTLEGHGQNISAVCFHP 132
D H G K ++G D LVKIW Y Q TLEGH + V + P
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL--EGHGQNISA 127
++ TL GHE V VD+ H L S + D V IW +N Q H ++++
Sbjct: 47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNS 106
Query: 128 VCFHPEL--PIVITGSEDGSVRV 148
V + P P+++ S DG V V
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSV 129
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 85 DYYHGGDKP--YLISGADDRLVKIWDY----QNKTCVQTLEGHGQNISAVCFHP 132
D H G K ++G D LVKIW Y Q TLEGH + V + P
Sbjct: 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 68 TLILKTL--YGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNI 125
TLI+ Y H+ V+ V G + +SG+ D +K+WD + + + H +
Sbjct: 115 TLIVSKFCKYEHDDIVSTVSVLSSGTQ--AVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172
Query: 126 SAVCFHP-ELPIVITGSEDGSVRVW 149
+ V P + + ++ SED + +W
Sbjct: 173 TCVAASPHKDSVFLSCSEDNRILLW 197
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 87 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP-ELPIVITGSEDGS 145
+H + G ++ V + D ++ +CV + H Q ++ + F P +P + + SED S
Sbjct: 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS 281
Query: 146 VRVWHSGTHRLEISLTY-GLERVWTISSLKGSNNVAIGYD 184
+ V S L S + R T S L S +G+D
Sbjct: 282 LAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD 321
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL--EGHGQNISA 127
++ TL GHE V VD+ H L S + D V IW +N Q H ++++
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNS 104
Query: 128 VCFHPEL--PIVITGSEDGSVRV 148
V + P P+++ S DG V V
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSV 127
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 85 DYYHGGDKP--YLISGADDRLVKIWDY----QNKTCVQTLEGHGQNISAVCFHP 132
D H G K ++G D LVKIW Y Q TLEGH + V + P
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 97 SGADDRLVKIWDYQNKTCVQ---TLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVW 149
S ADD+ + IWD +N + T++ H ++ + F+P ++ TGS D +V +W
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 97 SGADDRLVKIWDYQNKTCVQ---TLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVW 149
S ADD+ + IWD +N + T++ H ++ + F+P ++ TGS D +V +W
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 91 DKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
D S D + +WD N+T V+ +GH S + + + TG D +VR W
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVC 129
+++ GH G +C+D + G K L +G D V+ WD + +Q + Q I ++
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTK--LWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLG 231
Query: 130 FHPELPIVITGSEDGSVRVWH 150
+ P + G E +V V H
Sbjct: 232 YCPTGEWLAVGMESSNVEVLH 252
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 99 ADDRLVKIWDYQNKTCVQ---TLEGHGQNISAVCFHPELPIVI-TGSEDGSVRVW 149
ADD+ + IWD +N + T++ H ++ + F+P ++ TGS D +V +W
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 95 LISGADDRLVKIWDYQN-------KTCVQTLEGHGQNISAVCFHPELP-IVITGSEDGSV 146
+ SG++D V +W+ + + V TLEGH + + V +HP ++++ D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 147 RVWHSGTHRLEISL 160
VW GT ++L
Sbjct: 157 LVWDVGTGAAVLTL 170
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 73 TLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL--EGHGQNISAVCF 130
TL GH K V V +H + L+S D ++ +WD V TL + H I +V +
Sbjct: 126 TLEGHTKRVGIV-AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184
Query: 131 HPELPIVITGSEDGSVRV 148
+ ++ T D VRV
Sbjct: 185 SRDGALICTSCRDKRVRV 202
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 70 ILKTLYGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL--EGHGQNISA 127
++ TL GHE V VD+ H L S + D V IW +N Q H ++++
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNS 104
Query: 128 VCFHPEL--PIVITGSEDGSVRV 148
V + P P ++ S DG V V
Sbjct: 105 VQWAPHEYGPXLLVASSDGKVSV 127
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 85 DYYHGGDKP--YLISGADDRLVKIWDY----QNKTCVQTLEGHGQNISAVCFHP 132
D H G K ++G D LVKIW Y Q TLEGH + V + P
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|3UG9|A Chain A, Crystal Structure Of The Closed State Of Channelrhodopsin
Length = 333
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 195 EEPAVSMDVNGCKIIWARHSE---------VQQANLKTMPEVFENITAGVVLTLSVHVTI 245
+EPAV NG K +W R++E + +NL + + T G L +S TI
Sbjct: 119 DEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMG--LLVSDIGTI 176
Query: 246 KYRLDISDSHRSVAKLRAAAETCMHVLSTLQSSNVFVESLYDGLDFHHNVSRARFESLIG 305
+ + S V + C + + ++ V++E+ +H V + R ++
Sbjct: 177 VWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEA-------YHTVPKGRCRQVVT 229
Query: 306 GLLTSF 311
G+ F
Sbjct: 230 GMAWLF 235
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 95 LISG---ADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
LISG A ++LV IW Y V L+GH + ++ P+ V + + D ++R+W
Sbjct: 335 LISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLEGH 121
P + + L+T H+ V V + G DR ++IW+ + C+ ++ H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 122 GQNISAVCFHPELPIVITG 140
Q + ++ + P +I+G
Sbjct: 321 SQ-VCSILWSPHYKELISG 338
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 95 LISG---ADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
LISG A ++LV IW Y V L+GH + ++ P+ V + + D ++R+W
Sbjct: 346 LISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLEGH 121
P + + L+T H+ V V + G DR ++IW+ + C+ ++ H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 122 GQNISAVCFHPELPIVITG 140
Q + ++ + P +I+G
Sbjct: 332 SQ-VCSILWSPHYKELISG 349
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 286 YDGLDFHHNVSRARFESLIGGLLTSFV------QPCMHVLSTLQSSNVFVESLYDGLDFH 339
Y G +FH +SR + + L+GG+ +++ QP + L+ + L+ D
Sbjct: 53 YYGREFHGIISREQADELLGGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFH--DGK 110
Query: 340 HNVSRARFESL----IGGLLTSFVQ 360
H V RFES+ GL+T +++
Sbjct: 111 HFVGEKRFESIHDLVTDGLITLYIE 135
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 22/116 (18%)
Query: 94 YLISGADDRLVKIWDYQ-NKTCVQTLEGHGQNISAVCFHPEL------PIVITGSEDGSV 146
YL +G + IW+ + + V +++GH + I+A+ L P ++TGS DG+V
Sbjct: 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141
Query: 147 RVWHSGTHRLEISLTYGLERV--------WTISSLKGSNN----VAIGYDEGSVLL 190
+VW R + +E V WT++ N V GYD G + L
Sbjct: 142 KVWDP---RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKL 194
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 74 LYGHEKGVNCVDYYHGGDKPY-LISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHP 132
L G + +N VD+ +P+ +ISG+DD V I++ T H + + +V ++P
Sbjct: 143 LTGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 133 ELPIVITGSEDGSV 146
+ + + DG++
Sbjct: 201 DGSLFASTGGDGTI 214
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 95 LISG---ADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITGSEDGSVRVW 149
LISG A ++LV IW Y V L+GH + ++ P+ V + + D ++R+W
Sbjct: 255 LISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 63 PIQVATLILKTLYGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLEGH 121
P + + L+T H+ V V + G DR ++IW+ + C+ ++ H
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 122 GQNISAVCFHPELPIVITG 140
Q + ++ + P +I+G
Sbjct: 241 SQ-VCSILWSPHYKELISG 258
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 99 ADDRLVKIWDYQNKTCVQT---LEGHGQNISAVCFHPELPIVI-TGSEDGSVRVW 149
ADD+ + IWD ++ T + ++ H ++ + F+P ++ TGS D +V +W
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 71 LKTLYGHEKGVN------CVDYYHGGDKPYLISGADDRLVKIWDYQN---KTCVQTLEGH 121
L L H+K V C D++ L + + D+ VKIWD + K H
Sbjct: 243 LWNLRMHKKKVTHVALNPCCDWF-------LATASVDQTVKIWDLRQVRGKASFLYSLPH 295
Query: 122 GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL 160
++A CF P+ ++T + +RV+ + + L
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 71 LKTLYGHEKGVN------CVDYYHGGDKPYLISGADDRLVKIWDYQN---KTCVQTLEGH 121
L L H+K V C D++ L + + D+ VKIWD + K H
Sbjct: 243 LWNLRMHKKKVTHVALNPCCDWF-------LATASVDQTVKIWDLRQVRGKASFLYSLPH 295
Query: 122 GQNISAVCFHPELPIVITGSEDGSVRVWHSGTHRLEISL 160
++A CF P+ ++T + +RV+ + + L
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 97 SGADDRLVKIWDYQNKTCVQT---LEGHGQNISAVCFHPELPIVI-TGSEDGSVRVW 149
S ADD+ + IWD ++ T + ++ H ++ + F+P ++ TGS D +V +W
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 83 CVDYYHGGDKPYLISGADDRLVKIWDYQN---KTCVQTLEGHGQNISAVCFHPELPIVIT 139
C D++ L + + D+ VKIWD + K H ++A CF P+ ++T
Sbjct: 262 CCDWF-------LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 314
Query: 140 GSEDGSVRVWHSGTHRLEISL 160
+ +RV+ + + L
Sbjct: 315 TDQKSEIRVYSASQWDCPLGL 335
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 71 LKTLYGHEKGVNCVDYYHGGDKPYLISGADDRL-----VKIWDYQNKTCVQTLEGHGQNI 125
L+T+ GH+ V C+ + ++ L SG+ V+I ++Q + TL+GH +
Sbjct: 169 LRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQ----IGTLQGHSSEV 220
Query: 126 SAVCFHPELPIVITGSEDGSVRVW 149
+ + + + +G D V++W
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIW 244
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 81 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHGQNISAVCFHPELPIVITG 140
V V + H G +L G + LV I+D +++T ++T+ GH + C ++ +G
Sbjct: 137 VASVKWSHDGS--FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG--CLSWNRHVLSSG 192
Query: 141 SEDGSV 146
S G++
Sbjct: 193 SRSGAI 198
>pdb|3TZ1|A Chain A, Crystal Structure Of The Ca2+-saturated C-terminal
Domain Of Akazara Scallop Troponin C In Complex With A
Troponin I Fragment
Length = 74
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 3 RLISQAKNTIIKNK------RALNTELTETDIETIVRETKVDITTNKDMIEYK 49
R++ + K +IK ++L ELTE +IE ++ ET D + D E+K
Sbjct: 14 RVLDKEKKGVIKVDVLRWILKSLGDELTEDEIENMIAETDTDGSGTVDYEEFK 66
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 104 VKIWDY--QNKTCVQTLEGHGQNISAVCF--HP-ELPIVITGSEDGSVRVWHSGTHRLEI 158
+KIWD+ Q Q L G + C HP + +V TG +DG + +W + +
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 159 SLTYGLE-RVWTI 170
SL E +W +
Sbjct: 274 SLLKAHEAEMWEV 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,707,497
Number of Sequences: 62578
Number of extensions: 423438
Number of successful extensions: 1643
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 468
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)