BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4651
         (721 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P68|A Chain A, Solution Structure Of S-824, A De Novo Designed Four Helix
           Bundle
          Length = 102

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 479 LETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
           L+  +KE Q  LDE  NN L+GGK  +  +EQ ++E+ + L+
Sbjct: 57  LQEMMKEFQQVLDEL-NNHLQGGKHTVHHIEQNIKEIFHHLE 97


>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment.
 pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment
          Length = 1184

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 379  EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQ 428
            E+SRQ LE+    +R+ E E +D HEQ+ EL AQ   + A   K E ELQ
Sbjct: 1052 EKSRQELEKI---KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098


>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
          Length = 627

 Score = 29.6 bits (65), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 483 IKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHAD 528
           +K LQ+++D  E+      K+A  +L+  + EL N +DG Q    D
Sbjct: 9   LKRLQLQMDNLESRVALECKEAFAELQTDINELTNHMDGVQIPFLD 54


>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
           Toxoplasma Gondii
 pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
           Toxoplasma Gondii
 pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
           Toxoplasma Gondii
          Length = 324

 Score = 29.3 bits (64), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 370 RANALQNELEES-RQLLEQA-DRGRRQAETELADAHEQLNELSAQATSISA 418
           R++    E++E   QLL+QA D   + A+ EL    EQLN+  A +TS++A
Sbjct: 93  RSDVPATEVDEKLPQLLDQAVDDXYKNADNELVKXCEQLNKDYASSTSVTA 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,976,527
Number of Sequences: 62578
Number of extensions: 383775
Number of successful extensions: 1741
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1577
Number of HSP's gapped (non-prelim): 167
length of query: 721
length of database: 14,973,337
effective HSP length: 106
effective length of query: 615
effective length of database: 8,340,069
effective search space: 5129142435
effective search space used: 5129142435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)