Query psy4651
Match_columns 721
No_of_seqs 440 out of 2979
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:16:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 100.0 7.3E-35 1.6E-39 343.2 93.3 680 11-719 928-1635(1930)
2 KOG0161|consensus 100.0 3.2E-32 6.9E-37 321.1 84.4 607 14-623 1240-1921(1930)
3 PF01576 Myosin_tail_1: Myosin 100.0 1.2E-38 2.5E-43 365.6 -0.7 602 12-616 180-856 (859)
4 PF01576 Myosin_tail_1: Myosin 100.0 8.8E-35 1.9E-39 333.7 0.0 551 145-719 8-577 (859)
5 KOG0933|consensus 99.8 8.5E-11 1.8E-15 128.7 81.2 130 576-715 895-1036(1174)
6 KOG4674|consensus 99.8 4.3E-10 9.2E-15 132.8 88.2 339 364-703 999-1382(1822)
7 TIGR02168 SMC_prok_B chromosom 99.8 4E-09 8.8E-14 131.0 95.6 31 678-708 997-1027(1179)
8 TIGR02169 SMC_prok_A chromosom 99.8 3.6E-09 7.8E-14 131.1 93.3 57 647-704 956-1016(1164)
9 TIGR02168 SMC_prok_B chromosom 99.7 6E-09 1.3E-13 129.5 90.8 36 452-487 809-844 (1179)
10 COG1196 Smc Chromosome segrega 99.7 9.4E-09 2E-13 124.8 92.9 188 507-707 818-1010(1163)
11 PRK02224 chromosome segregatio 99.7 4E-09 8.6E-14 126.0 80.5 119 374-493 521-639 (880)
12 TIGR00606 rad50 rad50. This fa 99.7 2.5E-08 5.4E-13 122.7 87.4 95 504-598 823-927 (1311)
13 PRK02224 chromosome segregatio 99.7 8E-09 1.7E-13 123.4 79.0 130 340-470 508-637 (880)
14 TIGR02169 SMC_prok_A chromosom 99.7 5.3E-08 1.2E-12 120.8 96.0 17 690-706 995-1011(1164)
15 PF10174 Cast: RIM-binding pro 99.7 3.7E-09 8E-14 118.5 67.5 264 228-491 117-409 (775)
16 KOG0964|consensus 99.7 1.2E-08 2.7E-13 111.7 76.5 269 14-309 165-439 (1200)
17 KOG4674|consensus 99.6 4.7E-08 1E-12 116.0 88.9 185 392-578 1101-1297(1822)
18 TIGR00606 rad50 rad50. This fa 99.6 8.8E-08 1.9E-12 117.9 89.9 53 151-203 573-625 (1311)
19 KOG0996|consensus 99.6 3.5E-08 7.5E-13 110.7 75.5 220 52-278 375-595 (1293)
20 COG1196 Smc Chromosome segrega 99.5 8.7E-07 1.9E-11 107.9 90.8 62 16-78 169-230 (1163)
21 PF10174 Cast: RIM-binding pro 99.5 7.8E-07 1.7E-11 100.2 80.7 73 462-535 467-539 (775)
22 PRK03918 chromosome segregatio 99.4 2E-06 4.4E-11 103.1 74.4 14 336-349 461-474 (880)
23 PRK03918 chromosome segregatio 99.4 7.2E-06 1.5E-10 98.4 78.4 20 255-274 407-426 (880)
24 PRK01156 chromosome segregatio 99.1 0.00017 3.6E-09 86.6 74.5 21 286-306 421-441 (895)
25 KOG0996|consensus 99.0 0.00012 2.6E-09 83.2 73.6 163 146-311 403-565 (1293)
26 PF12128 DUF3584: Protein of u 99.0 0.00027 5.8E-09 86.6 84.4 103 504-613 772-874 (1201)
27 PF05483 SCP-1: Synaptonemal c 99.0 8.7E-05 1.9E-09 79.5 90.1 28 682-709 733-760 (786)
28 PF07888 CALCOCO1: Calcium bin 98.9 0.00015 3.2E-09 77.8 46.8 44 154-197 142-185 (546)
29 PF05701 WEMBL: Weak chloropla 98.9 0.00024 5.3E-09 78.6 69.0 50 152-201 31-80 (522)
30 PF07888 CALCOCO1: Calcium bin 98.9 0.00021 4.5E-09 76.7 46.7 59 159-217 140-198 (546)
31 PF00038 Filament: Intermediat 98.8 0.00036 7.7E-09 72.7 41.3 253 209-491 52-307 (312)
32 PF00038 Filament: Intermediat 98.8 0.00024 5.1E-09 74.1 39.6 71 365-435 71-141 (312)
33 PF00261 Tropomyosin: Tropomyo 98.7 2.5E-05 5.4E-10 77.2 29.2 54 528-581 173-226 (237)
34 PF00261 Tropomyosin: Tropomyo 98.7 6.3E-05 1.4E-09 74.3 31.1 113 357-469 108-220 (237)
35 KOG4643|consensus 98.7 0.0015 3.2E-08 73.2 51.5 59 377-435 395-453 (1195)
36 KOG0977|consensus 98.7 0.0003 6.5E-09 75.5 36.9 89 530-618 295-387 (546)
37 KOG0977|consensus 98.7 0.00036 7.9E-09 74.9 37.0 46 447-492 290-335 (546)
38 KOG4643|consensus 98.6 0.0031 6.8E-08 70.8 58.4 172 13-197 171-350 (1195)
39 PF12128 DUF3584: Protein of u 98.6 0.0072 1.6E-07 74.3 80.2 47 149-195 307-354 (1201)
40 KOG0971|consensus 98.5 0.0035 7.7E-08 69.4 46.6 160 243-409 280-443 (1243)
41 KOG0976|consensus 98.5 0.0032 6.9E-08 68.7 56.2 80 416-495 321-400 (1265)
42 PF05701 WEMBL: Weak chloropla 98.5 0.005 1.1E-07 68.3 66.2 132 420-552 283-414 (522)
43 KOG0933|consensus 98.4 0.0064 1.4E-07 68.6 77.4 107 508-614 813-919 (1174)
44 PF05483 SCP-1: Synaptonemal c 98.3 0.0081 1.8E-07 65.0 89.0 48 32-79 84-131 (786)
45 PRK04778 septation ring format 98.3 0.017 3.7E-07 65.1 55.2 53 388-440 280-332 (569)
46 PRK04778 septation ring format 98.2 0.023 4.9E-07 64.1 56.0 90 128-217 66-160 (569)
47 KOG0976|consensus 98.2 0.019 4.1E-07 62.9 68.0 23 471-493 383-405 (1265)
48 KOG0971|consensus 98.1 0.028 6.2E-07 62.6 47.9 116 369-491 325-441 (1243)
49 KOG0964|consensus 98.1 0.033 7.1E-07 62.8 69.2 117 160-276 256-372 (1200)
50 KOG0612|consensus 98.0 0.052 1.1E-06 62.9 49.5 97 395-493 672-768 (1317)
51 PF05557 MAD: Mitotic checkpoi 98.0 5.7E-05 1.2E-09 87.6 13.8 15 596-610 568-582 (722)
52 PF15070 GOLGA2L5: Putative go 98.0 0.054 1.2E-06 60.7 50.3 39 169-207 22-60 (617)
53 PF05557 MAD: Mitotic checkpoi 98.0 3.5E-05 7.5E-10 89.4 11.3 102 335-436 313-424 (722)
54 PF09728 Taxilin: Myosin-like 97.9 0.041 8.8E-07 56.4 43.1 56 162-217 36-91 (309)
55 PF14915 CCDC144C: CCDC144C pr 97.8 0.04 8.7E-07 54.1 41.8 61 370-430 138-198 (305)
56 PF05622 HOOK: HOOK protein; 97.8 4.9E-06 1.1E-10 96.1 0.0 29 377-405 392-420 (713)
57 KOG0612|consensus 97.8 0.16 3.4E-06 59.2 44.7 23 594-616 714-736 (1317)
58 PF09726 Macoilin: Transmembra 97.7 0.056 1.2E-06 61.6 30.9 33 461-493 623-655 (697)
59 KOG0978|consensus 97.7 0.14 3.1E-06 57.1 68.6 9 86-94 102-110 (698)
60 KOG0994|consensus 97.7 0.21 4.5E-06 57.5 53.5 24 54-77 1267-1290(1758)
61 PF12718 Tropomyosin_1: Tropom 97.6 0.032 6.9E-07 50.1 21.4 130 243-387 4-133 (143)
62 PF09726 Macoilin: Transmembra 97.5 0.2 4.3E-06 57.2 31.7 36 566-601 622-657 (697)
63 PHA02562 46 endonuclease subun 97.5 0.14 3.1E-06 58.2 31.2 49 397-445 213-261 (562)
64 KOG0994|consensus 97.5 0.33 7.1E-06 56.0 57.0 31 425-455 1511-1541(1758)
65 PF06160 EzrA: Septation ring 97.5 0.3 6.5E-06 55.0 58.0 110 506-615 375-493 (560)
66 PRK04863 mukB cell division pr 97.5 0.62 1.3E-05 57.9 87.6 55 567-621 993-1047(1486)
67 PRK11637 AmiB activator; Provi 97.4 0.24 5.3E-06 53.9 30.3 41 395-435 189-229 (428)
68 KOG0250|consensus 97.4 0.43 9.3E-06 55.4 73.0 24 652-675 926-949 (1074)
69 KOG0250|consensus 97.3 0.56 1.2E-05 54.5 72.4 132 146-277 321-453 (1074)
70 PRK04863 mukB cell division pr 97.3 0.89 1.9E-05 56.6 80.5 47 564-610 1065-1111(1486)
71 KOG0018|consensus 97.3 0.59 1.3E-05 54.0 70.7 43 162-204 303-345 (1141)
72 PF14915 CCDC144C: CCDC144C pr 97.3 0.23 5E-06 49.0 41.3 28 415-442 218-245 (305)
73 COG1340 Uncharacterized archae 97.2 0.28 6E-06 48.8 35.9 8 484-491 141-148 (294)
74 PRK11637 AmiB activator; Provi 97.2 0.48 1E-05 51.6 31.1 13 370-382 48-60 (428)
75 PF12718 Tropomyosin_1: Tropom 97.2 0.16 3.4E-06 45.6 20.9 11 397-407 56-66 (143)
76 KOG4673|consensus 97.2 0.52 1.1E-05 51.4 59.9 46 657-702 912-957 (961)
77 PF05622 HOOK: HOOK protein; 97.2 0.00013 2.7E-09 84.6 1.1 42 374-415 368-409 (713)
78 KOG4673|consensus 97.1 0.61 1.3E-05 50.9 70.2 34 13-46 347-380 (961)
79 PHA02562 46 endonuclease subun 97.1 0.79 1.7E-05 52.1 36.5 21 289-309 300-320 (562)
80 COG1579 Zn-ribbon protein, pos 97.1 0.34 7.3E-06 47.1 23.0 8 181-188 36-43 (239)
81 PF09728 Taxilin: Myosin-like 97.1 0.47 1E-05 48.7 41.6 67 372-438 233-299 (309)
82 PF14662 CCDC155: Coiled-coil 97.0 0.27 5.8E-06 45.4 28.4 43 339-381 65-107 (193)
83 PF06160 EzrA: Septation ring 97.0 0.87 1.9E-05 51.3 57.8 57 164-220 103-159 (560)
84 KOG1003|consensus 97.0 0.28 6.1E-06 45.1 27.7 133 359-491 50-182 (205)
85 PF14662 CCDC155: Coiled-coil 96.9 0.36 7.8E-06 44.6 28.3 29 455-483 160-188 (193)
86 PF04849 HAP1_N: HAP1 N-termin 96.7 0.76 1.7E-05 46.2 29.0 127 283-409 162-288 (306)
87 PF09730 BicD: Microtubule-ass 96.7 1.7 3.6E-05 49.5 69.1 55 25-79 33-87 (717)
88 COG1579 Zn-ribbon protein, pos 96.7 0.7 1.5E-05 44.9 24.4 55 443-497 28-82 (239)
89 PF10473 CENP-F_leu_zip: Leuci 96.6 0.45 9.8E-06 42.1 19.6 17 291-307 83-99 (140)
90 PRK09039 hypothetical protein; 96.6 1 2.2E-05 47.2 24.5 63 403-465 122-184 (343)
91 KOG0995|consensus 96.6 1.4 3.1E-05 47.6 47.4 8 163-170 236-243 (581)
92 KOG0995|consensus 96.5 1.7 3.6E-05 47.1 43.7 31 284-314 283-313 (581)
93 PRK09039 hypothetical protein; 96.4 1.5 3.3E-05 45.8 24.3 30 246-275 123-152 (343)
94 PF10473 CENP-F_leu_zip: Leuci 96.4 0.67 1.5E-05 41.0 19.3 25 523-547 16-40 (140)
95 KOG1003|consensus 96.2 0.97 2.1E-05 41.7 26.7 36 537-572 150-185 (205)
96 PF07111 HCR: Alpha helical co 96.2 2.8 6.1E-05 46.5 69.1 74 394-467 377-450 (739)
97 KOG0946|consensus 96.1 3.5 7.5E-05 46.4 32.9 15 477-491 928-942 (970)
98 COG1340 Uncharacterized archae 96.0 1.9 4.1E-05 43.0 39.5 12 283-294 109-120 (294)
99 PF04849 HAP1_N: HAP1 N-termin 96.0 2.1 4.5E-05 43.1 26.5 98 391-491 168-265 (306)
100 PF10481 CENP-F_N: Cenp-F N-te 95.8 1.6 3.4E-05 42.4 18.8 119 261-404 61-190 (307)
101 PF15619 Lebercilin: Ciliary p 95.8 1.8 4E-05 41.0 26.8 18 369-386 171-188 (194)
102 PF15066 CAGE1: Cancer-associa 95.8 3.2 6.9E-05 43.6 25.2 117 456-577 320-436 (527)
103 PF05667 DUF812: Protein of un 95.7 4.8 0.0001 45.3 35.9 55 150-204 323-377 (594)
104 PF05667 DUF812: Protein of un 95.6 5 0.00011 45.1 35.7 136 411-549 394-537 (594)
105 KOG1029|consensus 95.6 5.2 0.00011 44.7 36.8 6 545-550 549-554 (1118)
106 PF05010 TACC: Transforming ac 95.5 2.4 5.2E-05 40.5 30.6 110 337-449 19-128 (207)
107 PF15619 Lebercilin: Ciliary p 95.4 2.5 5.5E-05 40.1 26.6 92 370-461 13-104 (194)
108 PF09730 BicD: Microtubule-ass 95.4 6.8 0.00015 44.7 66.0 89 525-613 584-694 (717)
109 KOG0978|consensus 95.3 6.5 0.00014 44.4 74.2 41 511-551 525-565 (698)
110 KOG0018|consensus 95.1 9.2 0.0002 44.7 66.4 53 165-217 299-351 (1141)
111 KOG0980|consensus 94.7 10 0.00022 43.3 34.6 97 369-465 417-513 (980)
112 KOG0963|consensus 94.6 8.9 0.00019 42.2 48.1 136 330-471 192-335 (629)
113 COG4942 Membrane-bound metallo 94.4 7.9 0.00017 40.9 31.6 25 336-360 212-236 (420)
114 PF05911 DUF869: Plant protein 94.1 14 0.00031 42.8 54.6 34 172-205 81-114 (769)
115 PF08614 ATG16: Autophagy prot 94.1 0.57 1.2E-05 44.8 10.9 100 504-603 68-167 (194)
116 COG4372 Uncharacterized protei 94.0 8.2 0.00018 39.6 32.5 67 341-407 81-147 (499)
117 PF05010 TACC: Transforming ac 93.5 7.3 0.00016 37.3 29.7 10 185-194 25-34 (207)
118 KOG4593|consensus 93.2 17 0.00036 40.7 58.9 12 651-662 561-572 (716)
119 PF08614 ATG16: Autophagy prot 93.0 1.6 3.5E-05 41.7 12.0 98 509-606 80-177 (194)
120 COG4942 Membrane-bound metallo 92.8 15 0.00032 39.0 33.3 17 293-309 85-101 (420)
121 PF09789 DUF2353: Uncharacteri 92.8 13 0.00028 38.1 26.8 37 387-423 76-112 (319)
122 PF10481 CENP-F_N: Cenp-F N-te 92.7 11 0.00023 37.0 17.9 67 455-522 62-128 (307)
123 KOG0962|consensus 92.6 30 0.00066 42.0 83.4 75 2-78 184-268 (1294)
124 PF08826 DMPK_coil: DMPK coile 92.4 3.3 7.2E-05 30.8 10.2 58 515-572 2-59 (61)
125 KOG0980|consensus 92.2 26 0.00057 40.3 38.7 21 337-357 361-381 (980)
126 PF06008 Laminin_I: Laminin Do 92.1 15 0.00032 37.1 33.7 17 370-386 53-69 (264)
127 PF12325 TMF_TATA_bd: TATA ele 91.9 7.8 0.00017 33.5 14.2 17 418-434 23-39 (120)
128 PF06008 Laminin_I: Laminin Do 91.5 17 0.00036 36.7 34.0 44 155-198 24-67 (264)
129 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.2 10 0.00022 33.6 19.7 14 478-491 102-115 (132)
130 PF12325 TMF_TATA_bd: TATA ele 91.1 9.3 0.0002 33.0 15.5 44 152-195 20-63 (120)
131 PF15066 CAGE1: Cancer-associa 90.3 27 0.00059 37.0 26.7 21 205-225 391-411 (527)
132 PF06818 Fez1: Fez1; InterPro 90.3 17 0.00036 34.5 22.6 18 183-200 10-27 (202)
133 PF08317 Spc7: Spc7 kinetochor 89.9 27 0.00059 36.4 30.7 52 440-491 150-201 (325)
134 TIGR01005 eps_transp_fam exopo 89.3 45 0.00097 39.5 21.7 14 371-384 318-331 (754)
135 PF11559 ADIP: Afadin- and alp 89.0 18 0.00038 32.9 16.5 11 336-346 135-145 (151)
136 PF09304 Cortex-I_coil: Cortex 88.8 13 0.00028 31.0 14.4 62 238-313 15-76 (107)
137 PF06818 Fez1: Fez1; InterPro 88.8 22 0.00047 33.7 22.6 49 329-377 151-199 (202)
138 PF07111 HCR: Alpha helical co 88.6 47 0.001 37.4 70.1 28 646-673 586-613 (739)
139 PF09304 Cortex-I_coil: Cortex 88.6 13 0.00028 30.9 15.6 66 364-436 11-76 (107)
140 PF13851 GAS: Growth-arrest sp 88.5 24 0.00052 33.8 27.8 101 335-435 63-167 (201)
141 PF00769 ERM: Ezrin/radixin/mo 88.3 29 0.00062 34.5 17.8 38 330-367 8-45 (246)
142 COG4372 Uncharacterized protei 88.1 35 0.00075 35.3 33.7 60 350-409 76-135 (499)
143 PF06005 DUF904: Protein of un 87.8 11 0.00024 29.2 11.3 63 163-225 5-67 (72)
144 KOG0963|consensus 87.3 53 0.0012 36.4 47.4 45 566-610 390-434 (629)
145 COG1842 PspA Phage shock prote 87.2 31 0.00067 33.6 21.3 102 336-437 26-139 (225)
146 PF15397 DUF4618: Domain of un 86.0 38 0.00082 33.5 32.4 38 323-360 70-107 (258)
147 PF05384 DegS: Sensor protein 86.0 27 0.00059 31.9 21.0 46 175-220 26-71 (159)
148 PF09755 DUF2046: Uncharacteri 85.8 43 0.00093 34.0 36.8 20 416-435 227-246 (310)
149 TIGR01005 eps_transp_fam exopo 85.5 86 0.0019 37.1 24.5 27 335-361 195-221 (754)
150 PF09755 DUF2046: Uncharacteri 85.5 45 0.00097 33.9 38.1 16 367-382 82-97 (310)
151 KOG1853|consensus 85.2 37 0.00081 32.8 23.3 16 476-491 166-181 (333)
152 TIGR03007 pepcterm_ChnLen poly 85.2 68 0.0015 35.7 23.4 16 419-434 255-270 (498)
153 COG5185 HEC1 Protein involved 84.7 59 0.0013 34.6 40.4 23 287-309 374-396 (622)
154 PF10498 IFT57: Intra-flagella 84.2 60 0.0013 34.2 18.7 93 510-610 259-351 (359)
155 PF08317 Spc7: Spc7 kinetochor 83.8 59 0.0013 33.9 29.0 27 165-191 71-97 (325)
156 COG3883 Uncharacterized protei 83.1 52 0.0011 32.7 27.4 19 174-192 43-61 (265)
157 TIGR01843 type_I_hlyD type I s 82.9 75 0.0016 34.4 23.5 18 334-351 81-98 (423)
158 KOG0249|consensus 82.5 92 0.002 35.2 22.2 15 367-381 168-182 (916)
159 KOG0962|consensus 82.2 1.3E+02 0.0029 36.8 76.1 71 539-618 1009-1079(1294)
160 COG4477 EzrA Negative regulato 82.2 82 0.0018 34.4 49.7 105 91-204 200-309 (570)
161 COG4026 Uncharacterized protei 81.3 26 0.00057 33.1 11.1 48 395-442 161-208 (290)
162 PF13514 AAA_27: AAA domain 80.5 1.6E+02 0.0035 36.7 74.6 39 573-611 673-711 (1111)
163 PF14073 Cep57_CLD: Centrosome 80.5 49 0.0011 30.7 22.9 39 378-416 59-97 (178)
164 PF10498 IFT57: Intra-flagella 80.4 82 0.0018 33.2 16.5 35 344-378 216-250 (359)
165 TIGR03185 DNA_S_dndD DNA sulfu 80.0 1.2E+02 0.0027 35.0 38.7 9 300-308 207-215 (650)
166 PF04012 PspA_IM30: PspA/IM30 80.0 62 0.0013 31.5 23.2 101 337-437 26-138 (221)
167 PF04111 APG6: Autophagy prote 80.0 57 0.0012 33.7 14.7 79 539-617 58-136 (314)
168 COG4026 Uncharacterized protei 79.9 33 0.00072 32.5 11.3 73 507-579 132-204 (290)
169 PF04111 APG6: Autophagy prote 79.9 49 0.0011 34.2 14.1 10 482-491 121-130 (314)
170 PRK10698 phage shock protein P 79.7 63 0.0014 31.5 22.7 106 337-442 27-144 (222)
171 PF09789 DUF2353: Uncharacteri 78.8 83 0.0018 32.3 28.4 101 329-429 74-179 (319)
172 PF09738 DUF2051: Double stran 78.1 39 0.00085 34.5 12.4 19 660-678 226-244 (302)
173 PF10146 zf-C4H2: Zinc finger- 78.0 73 0.0016 31.2 16.5 67 512-578 34-100 (230)
174 PF08647 BRE1: BRE1 E3 ubiquit 77.8 39 0.00084 28.0 12.9 71 345-415 7-77 (96)
175 TIGR03185 DNA_S_dndD DNA sulfu 76.9 1.5E+02 0.0033 34.3 43.1 20 472-491 396-415 (650)
176 TIGR03007 pepcterm_ChnLen poly 76.6 1.3E+02 0.0029 33.5 24.4 17 261-277 276-292 (498)
177 TIGR02977 phageshock_pspA phag 75.7 82 0.0018 30.7 22.3 99 335-433 25-135 (219)
178 KOG0804|consensus 73.1 1.4E+02 0.0029 32.0 17.4 19 290-308 430-448 (493)
179 PF15294 Leu_zip: Leucine zipp 72.8 1.1E+02 0.0024 30.8 18.6 45 230-274 130-174 (278)
180 PF10146 zf-C4H2: Zinc finger- 72.1 1E+02 0.0022 30.2 16.3 71 546-616 33-103 (230)
181 PF00769 ERM: Ezrin/radixin/mo 70.3 1.2E+02 0.0026 30.2 17.7 14 663-676 185-198 (246)
182 PRK10884 SH3 domain-containing 69.9 1E+02 0.0022 29.7 12.4 8 294-301 99-106 (206)
183 PF13851 GAS: Growth-arrest sp 69.5 1.1E+02 0.0023 29.4 28.3 14 336-349 29-42 (201)
184 PF06705 SF-assemblin: SF-asse 69.2 1.3E+02 0.0027 30.0 34.6 23 335-357 6-28 (247)
185 PF09738 DUF2051: Double stran 69.2 1.4E+02 0.0031 30.6 14.0 58 394-451 81-138 (302)
186 KOG0249|consensus 68.7 2.1E+02 0.0046 32.5 22.7 41 370-410 217-257 (916)
187 smart00787 Spc7 Spc7 kinetocho 68.3 1.5E+02 0.0033 30.6 29.6 39 533-571 206-244 (312)
188 PF06785 UPF0242: Uncharacteri 68.3 1.4E+02 0.0031 30.3 17.8 28 226-253 149-176 (401)
189 KOG0982|consensus 67.9 1.7E+02 0.0037 31.0 25.4 23 287-309 214-236 (502)
190 COG2433 Uncharacterized conser 67.1 1.6E+02 0.0034 32.9 14.2 10 567-576 482-491 (652)
191 PF10212 TTKRSYEDQ: Predicted 66.8 2E+02 0.0044 31.5 20.9 96 263-358 416-511 (518)
192 PF14197 Cep57_CLD_2: Centroso 66.5 58 0.0012 25.1 10.4 9 514-522 9-17 (69)
193 PRK15422 septal ring assembly 65.1 66 0.0014 25.2 10.8 59 165-223 7-72 (79)
194 KOG4360|consensus 65.0 2.1E+02 0.0046 31.1 19.3 32 585-616 273-304 (596)
195 KOG1853|consensus 64.6 1.4E+02 0.0031 29.0 22.9 31 390-420 126-156 (333)
196 COG1382 GimC Prefoldin, chaper 63.9 96 0.0021 26.7 13.1 40 455-494 8-47 (119)
197 PF02183 HALZ: Homeobox associ 63.7 36 0.00078 23.7 5.9 40 237-276 3-42 (45)
198 PF11559 ADIP: Afadin- and alp 63.3 1.2E+02 0.0025 27.5 18.7 10 478-487 137-146 (151)
199 COG5185 HEC1 Protein involved 62.8 2.2E+02 0.0048 30.6 41.8 37 213-249 325-361 (622)
200 PF07889 DUF1664: Protein of u 62.7 1.1E+02 0.0023 26.8 13.4 20 420-439 63-82 (126)
201 PF12329 TMF_DNA_bd: TATA elem 62.2 74 0.0016 24.9 10.3 45 509-553 11-55 (74)
202 PF12777 MT: Microtubule-bindi 62.2 48 0.001 34.9 9.5 93 510-602 221-313 (344)
203 PF05911 DUF869: Plant protein 61.8 3.2E+02 0.007 32.1 65.5 84 502-585 623-706 (769)
204 PRK15422 septal ring assembly 60.9 80 0.0017 24.8 10.8 30 587-616 46-75 (79)
205 KOG4593|consensus 60.2 3E+02 0.0066 31.3 66.3 12 510-521 475-486 (716)
206 PF12329 TMF_DNA_bd: TATA elem 59.9 82 0.0018 24.6 10.4 48 417-464 4-51 (74)
207 PF06428 Sec2p: GDP/GTP exchan 59.8 37 0.0008 28.3 6.4 40 676-715 3-43 (100)
208 PF15450 DUF4631: Domain of un 59.1 2.8E+02 0.006 30.5 61.1 47 150-196 15-61 (531)
209 COG4477 EzrA Negative regulato 58.7 2.8E+02 0.0062 30.5 54.5 60 393-452 350-409 (570)
210 PF06428 Sec2p: GDP/GTP exchan 58.5 23 0.00049 29.5 4.9 39 165-203 4-43 (100)
211 KOG1899|consensus 58.4 3.1E+02 0.0066 30.7 19.4 31 526-556 226-256 (861)
212 PF09787 Golgin_A5: Golgin sub 57.5 3.2E+02 0.0068 30.6 36.4 40 557-596 390-429 (511)
213 KOG1899|consensus 57.3 3.2E+02 0.0069 30.6 21.3 55 403-457 159-213 (861)
214 PF02183 HALZ: Homeobox associ 56.1 57 0.0012 22.7 5.8 37 17-53 3-39 (45)
215 PF13870 DUF4201: Domain of un 55.6 1.8E+02 0.0038 27.2 23.4 38 593-630 111-148 (177)
216 PF10168 Nup88: Nuclear pore c 55.1 4.1E+02 0.0088 31.2 22.2 16 244-259 598-613 (717)
217 PRK11281 hypothetical protein; 53.8 5.2E+02 0.011 32.0 41.4 7 623-629 460-466 (1113)
218 PF05278 PEARLI-4: Arabidopsis 53.7 2.4E+02 0.0053 28.2 13.9 11 426-436 167-177 (269)
219 KOG0972|consensus 53.4 2.5E+02 0.0053 28.1 12.2 125 142-276 228-358 (384)
220 PF11932 DUF3450: Protein of u 52.6 2.5E+02 0.0054 27.9 17.2 39 533-571 51-89 (251)
221 smart00787 Spc7 Spc7 kinetocho 52.2 2.9E+02 0.0063 28.6 30.3 45 447-491 152-196 (312)
222 PF15450 DUF4631: Domain of un 52.0 3.6E+02 0.0078 29.6 62.0 66 456-525 333-398 (531)
223 COG1842 PspA Phage shock prote 51.6 2.4E+02 0.0052 27.5 23.4 38 455-492 33-70 (225)
224 KOG1937|consensus 51.6 3.4E+02 0.0073 29.2 35.9 10 511-520 477-486 (521)
225 PF07106 TBPIP: Tat binding pr 51.3 1.1E+02 0.0023 28.4 8.9 61 243-308 76-136 (169)
226 TIGR00634 recN DNA repair prot 50.4 4.3E+02 0.0092 30.0 24.1 39 157-195 163-201 (563)
227 PF10234 Cluap1: Clusterin-ass 50.3 2.8E+02 0.006 27.8 14.4 55 145-199 159-213 (267)
228 PF07889 DUF1664: Protein of u 49.8 1.8E+02 0.0039 25.5 13.3 42 150-194 38-79 (126)
229 PF04899 MbeD_MobD: MbeD/MobD 49.6 1.2E+02 0.0026 23.4 8.7 44 503-546 21-64 (70)
230 PF14073 Cep57_CLD: Centrosome 49.0 2.3E+02 0.0049 26.4 21.6 29 334-362 71-99 (178)
231 PRK10698 phage shock protein P 49.0 2.7E+02 0.0057 27.2 23.9 34 339-372 97-130 (222)
232 PF13514 AAA_27: AAA domain 48.9 6.3E+02 0.014 31.5 85.8 19 592-610 813-831 (1111)
233 PF14389 Lzipper-MIP1: Leucine 48.6 74 0.0016 25.9 6.4 23 468-490 62-84 (88)
234 TIGR02449 conserved hypothetic 47.8 1.2E+02 0.0026 23.0 9.2 45 535-579 4-48 (65)
235 PF12795 MscS_porin: Mechanose 47.1 2.9E+02 0.0064 27.2 24.1 42 452-493 91-132 (240)
236 PF06156 DUF972: Protein of un 47.1 1.7E+02 0.0038 24.7 8.5 49 362-410 8-56 (107)
237 COG3074 Uncharacterized protei 45.7 1.3E+02 0.0029 22.8 10.1 11 210-220 59-69 (79)
238 PF15290 Syntaphilin: Golgi-lo 45.7 3.2E+02 0.007 27.3 15.1 78 503-601 89-166 (305)
239 PF08172 CASP_C: CASP C termin 45.3 2.3E+02 0.0049 28.2 10.5 51 512-562 81-131 (248)
240 COG3074 Uncharacterized protei 45.3 1.3E+02 0.0029 22.7 10.7 63 15-77 7-69 (79)
241 PF14992 TMCO5: TMCO5 family 45.1 3.4E+02 0.0074 27.4 17.0 72 468-543 71-142 (280)
242 TIGR03752 conj_TIGR03752 integ 45.0 2.5E+02 0.0055 30.5 11.3 36 457-492 63-98 (472)
243 PF06810 Phage_GP20: Phage min 44.9 2.5E+02 0.0053 25.7 11.4 11 57-67 54-64 (155)
244 PF07106 TBPIP: Tat binding pr 44.7 2.6E+02 0.0056 25.8 11.3 20 475-494 117-136 (169)
245 KOG2264|consensus 43.7 2.9E+02 0.0063 30.5 11.3 22 556-577 104-125 (907)
246 KOG0982|consensus 43.6 4.3E+02 0.0094 28.1 26.8 85 231-315 303-387 (502)
247 PF06156 DUF972: Protein of un 41.9 1.9E+02 0.004 24.6 8.0 46 449-494 11-56 (107)
248 PF13870 DUF4201: Domain of un 41.6 3E+02 0.0064 25.7 24.4 53 427-479 79-131 (177)
249 KOG0979|consensus 40.0 7.4E+02 0.016 29.8 65.7 106 153-258 253-358 (1072)
250 PF05377 FlaC_arch: Flagella a 39.8 1.5E+02 0.0032 21.7 5.9 30 41-70 8-37 (55)
251 PF15035 Rootletin: Ciliary ro 39.6 3.3E+02 0.0071 25.6 17.2 27 152-178 13-39 (182)
252 PF06785 UPF0242: Uncharacteri 38.8 4.5E+02 0.0098 27.0 19.6 26 283-308 129-154 (401)
253 PF06705 SF-assemblin: SF-asse 38.5 4.1E+02 0.0088 26.4 35.0 24 335-358 35-58 (247)
254 KOG1850|consensus 38.3 4.5E+02 0.0097 26.8 43.8 83 404-493 243-325 (391)
255 KOG4603|consensus 37.6 3.3E+02 0.0071 25.0 10.1 50 30-79 90-141 (201)
256 PRK13169 DNA replication intia 37.0 2.7E+02 0.0057 23.8 8.4 47 363-409 9-55 (110)
257 smart00502 BBC B-Box C-termina 36.4 2.7E+02 0.0058 23.7 15.0 7 513-519 60-66 (127)
258 PF08232 Striatin: Striatin fa 36.4 3.1E+02 0.0067 24.3 10.5 65 157-221 6-70 (134)
259 PF10168 Nup88: Nuclear pore c 35.8 7.8E+02 0.017 28.9 23.8 41 150-190 560-600 (717)
260 PRK13169 DNA replication intia 35.5 2.7E+02 0.0058 23.7 7.9 44 450-493 12-55 (110)
261 KOG2010|consensus 34.9 4.7E+02 0.01 26.7 10.5 59 505-563 149-207 (405)
262 PF15188 CCDC-167: Coiled-coil 34.4 2.5E+02 0.0054 22.7 7.6 60 11-70 4-66 (85)
263 PF14389 Lzipper-MIP1: Leucine 34.2 2.4E+02 0.0052 22.9 7.3 28 392-419 10-37 (88)
264 PF10212 TTKRSYEDQ: Predicted 33.6 7E+02 0.015 27.6 20.1 12 511-522 421-432 (518)
265 PRK04325 hypothetical protein; 33.6 2.3E+02 0.005 22.1 8.1 28 14-41 11-38 (74)
266 KOG2264|consensus 33.3 3.8E+02 0.0083 29.6 10.3 16 212-227 108-123 (907)
267 COG1382 GimC Prefoldin, chaper 32.2 3.3E+02 0.0072 23.5 13.1 20 531-550 27-46 (119)
268 PF07989 Microtub_assoc: Micro 31.9 2.5E+02 0.0055 22.0 10.1 17 477-493 10-26 (75)
269 KOG4809|consensus 31.4 7.6E+02 0.016 27.4 32.7 278 194-488 328-605 (654)
270 PF15290 Syntaphilin: Golgi-lo 30.9 5.6E+02 0.012 25.7 15.0 12 480-491 88-99 (305)
271 KOG0288|consensus 30.8 6.8E+02 0.015 26.7 15.7 13 479-491 11-23 (459)
272 TIGR02338 gimC_beta prefoldin, 30.5 3.4E+02 0.0073 23.0 13.0 6 479-484 29-34 (110)
273 PF08581 Tup_N: Tup N-terminal 30.4 2.8E+02 0.006 22.0 11.8 75 173-250 1-75 (79)
274 PLN02939 transferase, transfer 30.4 1.1E+03 0.023 28.8 30.8 267 268-555 129-400 (977)
275 PRK09343 prefoldin subunit bet 30.4 3.6E+02 0.0079 23.3 13.7 14 475-488 29-42 (121)
276 KOG4603|consensus 29.8 4.4E+02 0.0096 24.2 12.4 64 242-310 82-145 (201)
277 KOG2991|consensus 29.8 5.5E+02 0.012 25.3 24.9 48 261-308 109-156 (330)
278 TIGR00634 recN DNA repair prot 29.8 8.6E+02 0.019 27.5 27.8 11 462-472 303-313 (563)
279 TIGR02231 conserved hypothetic 29.2 7.1E+02 0.015 27.9 12.7 30 584-613 142-171 (525)
280 PRK10803 tol-pal system protei 29.2 4.3E+02 0.0094 26.5 9.8 38 172-209 57-94 (263)
281 TIGR03017 EpsF chain length de 28.8 7.8E+02 0.017 26.7 24.4 26 336-361 173-198 (444)
282 PF07795 DUF1635: Protein of u 28.5 4.8E+02 0.011 25.1 9.2 45 323-367 15-59 (214)
283 PF02994 Transposase_22: L1 tr 27.5 2.1E+02 0.0045 30.4 7.6 37 241-277 153-189 (370)
284 PF15254 CCDC14: Coiled-coil d 27.2 1E+03 0.023 27.7 21.3 30 454-483 502-531 (861)
285 PF12777 MT: Microtubule-bindi 27.0 7.5E+02 0.016 25.9 22.4 93 373-465 218-310 (344)
286 PF10205 KLRAQ: Predicted coil 27.0 3.8E+02 0.0082 22.5 11.1 39 425-463 12-50 (102)
287 PF05276 SH3BP5: SH3 domain-bi 26.7 6.3E+02 0.014 24.9 29.0 43 561-603 179-221 (239)
288 PF15254 CCDC14: Coiled-coil d 26.6 1.1E+03 0.023 27.6 26.2 39 451-489 439-477 (861)
289 KOG0999|consensus 25.2 9.7E+02 0.021 26.6 69.0 544 152-719 12-707 (772)
290 TIGR02231 conserved hypothetic 24.8 8.7E+02 0.019 27.2 12.4 19 473-491 151-169 (525)
291 PRK02119 hypothetical protein; 24.2 3.5E+02 0.0075 21.1 8.2 55 525-579 3-57 (73)
292 PF05103 DivIVA: DivIVA protei 24.1 1.4E+02 0.0031 26.0 4.9 36 262-297 34-69 (131)
293 PF06120 Phage_HK97_TLTM: Tail 23.9 8E+02 0.017 25.2 18.6 15 292-306 78-92 (301)
294 PF04899 MbeD_MobD: MbeD/MobD 23.8 3.5E+02 0.0075 20.9 9.9 39 334-372 21-59 (70)
295 PF13747 DUF4164: Domain of un 23.6 4.1E+02 0.0088 21.6 11.8 33 443-475 36-68 (89)
296 PF15035 Rootletin: Ciliary ro 23.5 6.2E+02 0.014 23.8 19.9 65 376-440 60-124 (182)
297 KOG4360|consensus 23.4 1E+03 0.022 26.2 24.7 41 397-437 219-259 (596)
298 PHA03011 hypothetical protein; 23.2 4.3E+02 0.0092 21.8 8.4 59 19-77 57-115 (120)
299 PF12761 End3: Actin cytoskele 23.2 6.5E+02 0.014 23.9 11.4 20 477-496 99-118 (195)
300 PF02994 Transposase_22: L1 tr 23.0 3E+02 0.0065 29.3 7.7 44 454-497 145-188 (370)
301 PRK10929 putative mechanosensi 22.9 1.5E+03 0.033 28.1 47.4 35 577-611 394-428 (1109)
302 PF05700 BCAS2: Breast carcino 22.9 7.1E+02 0.015 24.2 17.9 39 397-435 175-213 (221)
303 PF13166 AAA_13: AAA domain 22.8 1.3E+03 0.027 27.1 27.0 43 568-610 426-468 (712)
304 PF11180 DUF2968: Protein of u 22.7 6.5E+02 0.014 23.7 15.3 27 329-355 114-140 (192)
305 PF05278 PEARLI-4: Arabidopsis 22.6 7.9E+02 0.017 24.7 16.5 61 432-492 200-260 (269)
306 PRK03947 prefoldin subunit alp 22.2 5.5E+02 0.012 22.7 14.1 28 161-188 12-39 (140)
307 PF10205 KLRAQ: Predicted coil 22.1 4.8E+02 0.01 21.9 11.4 61 14-74 7-67 (102)
308 PF10234 Cluap1: Clusterin-ass 21.9 8.2E+02 0.018 24.6 19.1 51 357-407 185-235 (267)
309 PRK10246 exonuclease subunit S 21.7 1.6E+03 0.034 27.8 81.3 16 20-35 192-207 (1047)
310 PF04859 DUF641: Plant protein 21.5 2.7E+02 0.0059 24.5 5.8 48 395-442 78-125 (131)
311 KOG2991|consensus 21.3 8E+02 0.017 24.2 24.2 22 589-610 280-301 (330)
312 PRK13729 conjugal transfer pil 20.9 5.7E+02 0.012 28.0 9.1 39 37-75 80-118 (475)
313 PF08172 CASP_C: CASP C termin 20.6 8.5E+02 0.018 24.2 10.3 53 564-616 84-136 (248)
314 smart00502 BBC B-Box C-termina 20.1 5.4E+02 0.012 21.7 15.7 35 400-434 10-44 (127)
No 1
>KOG0161|consensus
Probab=100.00 E-value=7.3e-35 Score=343.17 Aligned_cols=680 Identities=26% Similarity=0.340 Sum_probs=576.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 11 LKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEV 90 (721)
Q Consensus 11 ~~~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~ 90 (721)
....++....|..+...+++....+.++..++...+..+..+..++..+...++.|.+..+.++..+.+ ...+++.+.
T Consensus 928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~--l~~~l~~~e 1005 (1930)
T KOG0161|consen 928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRE--LQDDLQAEE 1005 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 355778889999999999999999999999999999999999999999999999999999999999887 556789999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhh----------cCCCccchhhHHHHHHHHHH
Q psy4651 91 DRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSL----------KHPYPLFFPRRKLQARLAEA 160 (721)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~----------~~~~~le~~~k~l~~~l~~l 160 (721)
++++.+.+...+++..++.++..+.-++.. +.+++..+++++.++. .....+....++...++..+
T Consensus 1006 ek~~~l~k~~~kle~~l~~le~~le~e~~~----r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l 1081 (1930)
T KOG0161|consen 1006 EKAKSLNKAKAKLEQQLDDLEVTLEREKRI----RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQL 1081 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888766322221 1256666666666553 23344555555666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4651 161 EETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTE 240 (721)
Q Consensus 161 ~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e 240 (721)
...++.....+..+++.+..++..|.++..+++.....++.+++..+.+..++.+++..+++..........--...+.+
T Consensus 1082 ~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e 1161 (1930)
T KOG0161|consen 1082 QSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAE 1161 (1930)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999999999998855443333333668899
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 241 LFRLKGAYEEAQEQLEAVR-RENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVL 319 (721)
Q Consensus 241 ~~~l~~ele~~~~~~e~~~-~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~ 319 (721)
+..++..++.....++... .....+...+..+..++++.......+.+.+..+..++..+..+++.+.......+..+.
T Consensus 1162 ~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k 1241 (1930)
T KOG0161|consen 1162 VQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDK 1241 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence 9999999999988887654 467888889999999999777777777777777777777777777766665555555555
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy4651 320 RAQLELSQ---ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGR---- 392 (721)
Q Consensus 320 ~~~~~l~~---~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~---- 392 (721)
.++..+.. -..++...+..+-.+...++.++.+..+...+.+.....+.+....+..+++.++.+++...+.+
T Consensus 1242 ~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~ 1321 (1930)
T KOG0161|consen 1242 KLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALE 1321 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544333 23344444555556666677777777777777777777778888888888888888888766544
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 393 ---RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE-AKNSEEKAKKAMVDAARLADELRAEQDH 468 (721)
Q Consensus 393 ---~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~-~~~~e~~~~~l~~e~~~l~~~l~~~~~~ 468 (721)
++++.+++.++.++++.......+...+.+...++..|+.+++..... .+.+++..+.+...+..+...+......
T Consensus 1322 ~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~ 1401 (1930)
T KOG0161|consen 1322 NALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAK 1401 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999999965554 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 469 AQTQEKLRKALETQIKELQIRLDEAENNAL------KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKE 542 (721)
Q Consensus 469 ~~~le~~k~~Le~e~~~L~~~l~~~e~~~~------~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~e 542 (721)
+..+++.+.+|..++.++...++....... +.+++.+..|......+..+++......+...+.+.++...+.+
T Consensus 1402 ~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1402 NASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999876644332 46888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy4651 543 LSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVAR 622 (721)
Q Consensus 543 l~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~~~~ 622 (721)
+..+++.+.+.+..+...+..+...+..+.+.+++++.....+...+.+++..+.+++..+...++.. ++.+
T Consensus 1482 ~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~--lr~~------ 1553 (1930)
T KOG0161|consen 1482 LLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKK--LRLQ------ 1553 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999998888 7766
Q ss_pred CCCcccchhhhhhhhhHHHHHHHHHhhhhhhchHHHHHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4651 623 GSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEI 702 (721)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~ 702 (721)
+++ .+.+.++++ +|..++++++..++++++.|.+|++.++.+.++++.+.++|++|+++|++|+.
T Consensus 1554 ----~~~-------~~~r~e~er----~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~ 1618 (1930)
T KOG0161|consen 1554 ----LEL-------QQLRSEIER----RLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEI 1618 (1930)
T ss_pred ----HHH-------HHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHH
Confidence 555 367777665 49999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhHHHHHhhcc
Q psy4651 703 ALDHANKVRVAAISRKK 719 (721)
Q Consensus 703 ~l~~~~~~~~~~~~~~~ 719 (721)
+|+|||+++.++++..+
T Consensus 1619 ~ld~ank~~~d~~K~lk 1635 (1930)
T KOG0161|consen 1619 QLDHANKANEDAQKQLK 1635 (1930)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 99999999999999764
No 2
>KOG0161|consensus
Probab=100.00 E-value=3.2e-32 Score=321.06 Aligned_cols=607 Identities=52% Similarity=0.691 Sum_probs=546.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRA 93 (721)
Q Consensus 14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~~~ 93 (721)
.+.++..+.++...+......+..+......+..++..+...+++....+..+.+....|..++.. .+..+..+....
T Consensus 1240 ~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~--~k~qle~e~r~k 1317 (1930)
T KOG0161|consen 1240 DKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEE--LKRQLEEETREK 1317 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 455666666667777777666666667777788888888888888888888888888888888887 344555555555
Q ss_pred HHHHHHHHHHHHHHhHHHhHH--------HhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHH
Q psy4651 94 NAIANAAEKKAKAIDKIIGEW--------KLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIE 165 (721)
Q Consensus 94 ~~l~~~~~~~~~~~~~l~~~~--------~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le 165 (721)
..+..++..+..+++.+...+ .+...+..... ++..|+.+++.......+.+++.++.+...+..+++.++
T Consensus 1318 ~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~-e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1318 SALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA-ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555555555555443221 35556666666 799999999987777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4651 166 SLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK 245 (721)
Q Consensus 166 ~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~ 245 (721)
.+...+..+++.+..++.++.++..+++........++++.+.++..+.+|+...+.+..+++.++.+.+.+..++.++.
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~ 1476 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLK 1476 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL 325 (721)
Q Consensus 246 ~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l 325 (721)
..++.....++.+....+.+..++.++..++.+..+.+..+++.++.++.++.+++..+++++..+...+....++++++
T Consensus 1477 ~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~ 1556 (1930)
T KOG0161|consen 1477 NALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLEL 1556 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887776666654
Q ss_pred HH-------------------------------------------------------------------HHHHHHHHHHH
Q psy4651 326 SQ-------------------------------------------------------------------ANAEAQKNIKR 338 (721)
Q Consensus 326 ~~-------------------------------------------------------------------~~~~~~~~~~~ 338 (721)
.+ ...++.++++.
T Consensus 1557 ~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk 1636 (1930)
T KOG0161|consen 1557 QQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKK 1636 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHh
Confidence 33 34456677778
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651 339 YQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISA 418 (721)
Q Consensus 339 l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~ 418 (721)
++.++.+++..++++.+...++......+++++..+.+++++++..++.+.+.++.++.++.++.+.+.......+.+..
T Consensus 1637 ~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~ 1716 (1930)
T KOG0161|consen 1637 LQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTA 1716 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhh
Confidence 88888888888888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy4651 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL 498 (721)
Q Consensus 419 ~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~ 498 (721)
..++++.+|..+...+++.......+.+..+++..+...+..++...++....++..+..|+..+.+|+.+|++++....
T Consensus 1717 ~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~ 1796 (1930)
T KOG0161|consen 1717 EKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAAL 1796 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651 499 KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578 (721)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~ 578 (721)
+.+...|..|+.+|.+|+.+|+...+......+.+++.++.+.++..++++-++....+++.++.++..+..+++++++.
T Consensus 1797 ~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleea 1876 (1930)
T KOG0161|consen 1797 KGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEA 1876 (1930)
T ss_pred hccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy4651 579 EEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARG 623 (721)
Q Consensus 579 ~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~~~~~ 623 (721)
+.....+...++.+++.++++.+....+++.+..|+..+..|+..
T Consensus 1877 E~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r~~~~~ 1921 (1930)
T KOG0161|consen 1877 EEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKLRSTGTK 1921 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999998766544
No 3
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=1.2e-38 Score=365.57 Aligned_cols=602 Identities=50% Similarity=0.693 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 12 KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVD 91 (721)
Q Consensus 12 ~~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~ 91 (721)
+.++.++..+.++...++.....+..+...+..+..++..|...+.+....+..+.+....|..++.+ .+..|..+..
T Consensus 180 k~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee--lk~~leeEtr 257 (859)
T PF01576_consen 180 KKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE--LKRQLEEETR 257 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHhHhh
Confidence 44677777777777778888888888888888888888888888888888888888888888877776 3334444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHh--------HHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHH
Q psy4651 92 RANAIANAAEKKAKAIDKIIG--------EWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEET 163 (721)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~l~~--------~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~ 163 (721)
....+...+..+..+++.+.. ...+...+..++. ++..|+.+|+.+.......++..++++...+.++...
T Consensus 258 ~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~-El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~ 336 (859)
T PF01576_consen 258 AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNA-ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQ 336 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555554432 1245566666666 7999999999877777889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4651 164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFR 243 (721)
Q Consensus 164 le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~ 243 (721)
++.....+..|++.+.+|.++++++...++........++++.+.|+..+.+|+..+..+...++.++.+.+.+..++..
T Consensus 337 le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~ 416 (859)
T PF01576_consen 337 LEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFK 416 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 244 LKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL 323 (721)
Q Consensus 244 l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~ 323 (721)
++..++.....++.+...+..|..++.++..++++....+..|.+.+..|+.++.+++..++++++.+...+..+.++++
T Consensus 417 Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~ 496 (859)
T PF01576_consen 417 LKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQV 496 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-------------------------------------------------------------------HHHHHHHHH
Q psy4651 324 ELSQ-------------------------------------------------------------------ANAEAQKNI 336 (721)
Q Consensus 324 ~l~~-------------------------------------------------------------------~~~~~~~~~ 336 (721)
++.. +..++.+.+
T Consensus 497 el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~ 576 (859)
T PF01576_consen 497 ELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQL 576 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 8765 233345556
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI 416 (721)
Q Consensus 337 ~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l 416 (721)
+.+..++.+++..+++..+.++++...+..+++++..+..+++++...++.+.+.++.++.++.++...+..+......+
T Consensus 577 kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l 656 (859)
T PF01576_consen 577 KKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSL 656 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66667777777777777777777777777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4651 417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496 (721)
Q Consensus 417 ~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~ 496 (721)
...++.++..|..+...+++.......+.+..+++..++..+..+|...++.+..+++.+..|+..|.+|+.+|+++++.
T Consensus 657 ~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~ 736 (859)
T PF01576_consen 657 SEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQS 736 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4651 497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE 576 (721)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~le 576 (721)
..+++...|..++.+|.+|+.+|+...+....+.+.+++++..++++..++++..+....+++.++.+...++.++++++
T Consensus 737 ~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~e 816 (859)
T PF01576_consen 737 ALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLE 816 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4651 577 EAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 577 e~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~ 616 (721)
+++.........++.+++.++++......++..+..||..
T Consensus 817 eaEe~~~~~~~k~Rk~q~elee~~e~~~~~e~~l~~lr~~ 856 (859)
T PF01576_consen 817 EAEEEASRNLAKYRKLQRELEEAEERAEAAERELNKLRAK 856 (859)
T ss_dssp --------------SSSSHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999876
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=8.8e-35 Score=333.70 Aligned_cols=551 Identities=30% Similarity=0.399 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 145 PLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLA 224 (721)
Q Consensus 145 ~le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~ 224 (721)
.++...++...++..+...++.-...+..+.+.+..|+..|..|..+|+.....+...++..+.|..+|.++...+++..
T Consensus 8 ~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~ 87 (859)
T PF01576_consen 8 ELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAG 87 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455556666777778888888889999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy4651 225 AELDASQKEC-RNYSTELFRLKGAYEEAQEQLEAV-RRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA 302 (721)
Q Consensus 225 ~~~~~~~~~~-~~le~e~~~l~~ele~~~~~~e~~-~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~ 302 (721)
+.- .++.++ +..+.++.+|+.+|+.....++.. ...++.+...+.+|..+|+...+....+.+.+..+..++..+..
T Consensus 88 ~~t-~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~ 166 (859)
T PF01576_consen 88 GAT-QAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQA 166 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 763 344444 678999999999999988888764 45678999999999999998888777888888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4651 303 ALEEAEAALEQEENKVLRAQLELSQA---NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE 379 (721)
Q Consensus 303 ~le~~~~~l~~~e~~~~~~~~~l~~~---~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele 379 (721)
.++.+.......+..+..++.++... ..+.++.+..+......+..+++++.+.+.+.......+.+....+..+++
T Consensus 167 ~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLe 246 (859)
T PF01576_consen 167 QLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLE 246 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776654433333333333333322 222333333444444444444444444444444444445555555666666
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHH
Q psy4651 380 ESRQLLEQADRG-------RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE-AKNSEEKAKKA 451 (721)
Q Consensus 380 ~~~~~~~~~~~~-------~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~-~~~~e~~~~~l 451 (721)
+++..++...+. .+.++.+++.+++.+++.......+...+..+..++..|+.+++..... .+.+++..+++
T Consensus 247 elk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL 326 (859)
T PF01576_consen 247 ELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKL 326 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 666666654443 3666677777777777777888889999999999999999999965444 78889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh------hcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 452 MVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL------KGGKKAIQKLEQRVRELENELDGEQRR 525 (721)
Q Consensus 452 ~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~------~~~~~~~~~~~~~~~~l~~ele~~~~~ 525 (721)
...+..+...+......+..|++.+.+|..++.|+...++...+... ..|+..+..|...+..+...++.+...
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e 406 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQRE 406 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997765442 468889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 526 HADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADL 605 (721)
Q Consensus 526 ~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~ 605 (721)
+..+.+.+..+...+.++...++.+.+.+..+..++..+...+......+++++.....|...+.++...+++++..+..
T Consensus 407 ~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~ 486 (859)
T PF01576_consen 407 ARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEA 486 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcccchhhhhhhhhHHHHHHHHHhhhhhhchHHHHHhHhhHHHHHHHHHHhHHHHHhcHHH
Q psy4651 606 AEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAE 685 (721)
Q Consensus 606 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~~~~~~ 685 (721)
.+..+ +|.+ ++++ +.+.+|++. |.+++++|+..|+++++.|.+|+..|+.+++.++.
T Consensus 487 ~E~~~--lRl~----------~el~-------~~r~e~er~----l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~ 543 (859)
T PF01576_consen 487 EEQKK--LRLQ----------VELQ-------QLRQEIERE----LQEKEEEFEETRRNHQRQLESLEAELEEERKERAE 543 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH--HHHH----------HHHH-------HHHHHHHHH----HHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 99988 7777 6663 577776664 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhhcc
Q psy4651 686 ALRMKKKLEADINELEIALDHANKVRVAAISRKK 719 (721)
Q Consensus 686 ~~~~k~~le~~i~~l~~~l~~~~~~~~~~~~~~~ 719 (721)
+.+.|++|+++|++|+.+|+|+|+++.++.+..+
T Consensus 544 ~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~k 577 (859)
T PF01576_consen 544 ALREKKKLESDLNELEIQLDHANRANEEAQKQLK 577 (859)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 9999999999999999999999999999988654
No 5
>KOG0933|consensus
Probab=99.81 E-value=8.5e-11 Score=128.73 Aligned_cols=130 Identities=17% Similarity=0.090 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCCCCCcccchhhhhhhhhHHHHHHHHHh
Q psy4651 576 EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGG-------SVARGSSPLKLVCSVTFCRQITVQITSKLV 648 (721)
Q Consensus 576 ee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (721)
+.+..........+.++.+++..+...-..+...++.+..+++ -||.+|+.|+|. ...+.+ ++
T Consensus 895 e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~------~~~p~~----ar 964 (1174)
T KOG0933|consen 895 EKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFE------SYDPHE----AR 964 (1174)
T ss_pred HHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccc------cCCHhH----HH
Confidence 3344445555566778888888888888888888888888886 299999999994 566655 67
Q ss_pred hhhhhchHHHHHhHhhHHHHHHHHHHhHHHHH----hcHHHHHHHHHHHHHHHHHHHH-HHhHHHHhHHHHH
Q psy4651 649 LHLFLLEEEFENTRKNHQRALDSMQASLEAEA----KGKAEALRMKKKLEADINELEI-ALDHANKVRVAAI 715 (721)
Q Consensus 649 ~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~----~~~~~~~~~k~~le~~i~~l~~-~l~~~~~~~~~~~ 715 (721)
.+|..+++.++.+++++|+++++|.+..|..+ +.+..+...|.++-..|..|.. .-+..+++-....
T Consensus 965 e~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN 1036 (1174)
T KOG0933|consen 965 EELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVN 1036 (1174)
T ss_pred HHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999998775 4677888999999999999987 5566777665543
No 6
>KOG4674|consensus
Probab=99.79 E-value=4.3e-10 Score=132.80 Aligned_cols=339 Identities=16% Similarity=0.187 Sum_probs=187.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADA-------HEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436 (721)
Q Consensus 364 ~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l-------~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~ 436 (721)
...+.+.+..+..++..+......+......+..++... +..|+...-....+...+.++..++..+..++..
T Consensus 999 ~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~ 1078 (1822)
T KOG4674|consen 999 LLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLK 1078 (1822)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444433333333332 2222222222333444445555555555555544
Q ss_pred HHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----cchhHHHHH
Q psy4651 437 LLNEAKNSE----EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK----GGKKAIQKL 508 (721)
Q Consensus 437 ~~~~~~~~e----~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~----~~~~~~~~~ 508 (721)
....++... ...+.+...-..+..++.....++..|+..++-|...++.+............. .....+..+
T Consensus 1079 Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~L 1158 (1822)
T KOG4674|consen 1079 LKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFL 1158 (1822)
T ss_pred HHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH
Confidence 433333332 223344445556666777777788888888888888888877765531211111 134455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHH
Q psy4651 509 EQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDR---------------------------KNHERMQDLV 561 (721)
Q Consensus 509 ~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~---------------------------~~~~~l~~~~ 561 (721)
+....-+...++-+..+...+...+.-+...+.++...+...+ ..+..+....
T Consensus 1159 R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1159 RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREEN 1238 (1822)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6666666666666555555555555554444444444333332 3344556666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCCCcccchhhhhhhhh
Q psy4651 562 DKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGS---VARGSSPLKLVCSVTFCRQ 638 (721)
Q Consensus 562 ~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 638 (721)
......+..+...+..+...+..+...+..+...+......+..++.....|+....+ -.....+.+|.........
T Consensus 1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~ 1318 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISR 1318 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 6666777777777777777777777777777777777777776666666666666432 0011111223211112223
Q ss_pred HHHHHHHHHhhhhhhchHHHHHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy4651 639 ITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIA 703 (721)
Q Consensus 639 ~~~~~~~~~~~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~~ 703 (721)
+...+.. ....++++...+..++..+...++.+.-....-.+.-..+...+.+|.....++..+
T Consensus 1319 Lk~el~~-ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1319 LKEELEE-KENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333221 234456666677777777777777777766666666677777777777777777776
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.76 E-value=4e-09 Score=131.02 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=19.6
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy4651 678 AEAKGKAEALRMKKKLEADINELEIALDHAN 708 (721)
Q Consensus 678 ~e~~~~~~~~~~k~~le~~i~~l~~~l~~~~ 708 (721)
.-..+..++..++..|+..|.++........
T Consensus 997 ~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 997 ELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777666554443
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.75 E-value=3.6e-09 Score=131.14 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=37.7
Q ss_pred HhhhhhhchHHHHHhHhhHHHHHHHHHHhH----HHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 647 LVLHLFLLEEEFENTRKNHQRALDSMQASL----EAEAKGKAEALRMKKKLEADINELEIAL 704 (721)
Q Consensus 647 ~~~~l~~~~ee~e~~rk~~~~~v~~l~~~l----e~e~~~~~~~~~~k~~le~~i~~l~~~l 704 (721)
+...+..+..++..+.. +|......++.+ +.-..+..++...+..|...|..|+..-
T Consensus 956 l~~~l~~l~~~i~~l~~-vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169 956 VQAELQRVEEEIRALEP-VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016 (1164)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666666665544 665555555555 4445678889999999999998887654
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.73 E-value=6e-09 Score=129.50 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 452 MVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487 (721)
Q Consensus 452 ~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~ 487 (721)
..++..+...+......+..++.....+...+..+.
T Consensus 809 ~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 844 (1179)
T TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.72 E-value=9.4e-09 Score=124.82 Aligned_cols=188 Identities=20% Similarity=0.223 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 507 KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNL 586 (721)
Q Consensus 507 ~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~ 586 (721)
.+......+..++.........+...+..+...+..+...+......+..+...+..+...+..+.....++...+..+.
T Consensus 818 ~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~ 897 (1163)
T COG1196 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444445555555555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCcccchhhhhhhhhHHHHHHHHHhhhhhhchHHHHHhHhhH
Q psy4651 587 AKFRKAQQELEEAEERADLAEQAVSKIRTKGGS-VARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNH 665 (721)
Q Consensus 587 ~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ee~e~~rk~~ 665 (721)
..+..+...+..+...+..+......+...++. ......++... .... ++..+..++.....+ ..|
T Consensus 898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~~i~~le~~i~~l-g~V 964 (1163)
T COG1196 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT--------LETE----LEREIERLEEEIEAL-GPV 964 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--------hhHH----HHHHHHHHHHHHHhc-cCC
Confidence 444455544444444444443333333332221 00001111110 0002 334466666665555 367
Q ss_pred HHHHHHHHHhHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4651 666 QRALDSMQASLEAEA----KGKAEALRMKKKLEADINELEIALDHA 707 (721)
Q Consensus 666 ~~~v~~l~~~le~e~----~~~~~~~~~k~~le~~i~~l~~~l~~~ 707 (721)
|..+...++.+...+ ..+.++..++..|...|.++.......
T Consensus 965 N~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~ 1010 (1163)
T COG1196 965 NLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010 (1163)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888776655 477789999999999998888765443
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=99.70 E-value=4e-09 Score=126.00 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Q psy4651 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMV 453 (721)
Q Consensus 374 l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~ 453 (721)
+...++.....++........+..++..+...+.........+......+...+..+..++.........++ .+..+..
T Consensus 521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~ 599 (880)
T PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLA 599 (880)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 333333333444444444445555555555444444433333333344444444444444444444444443 2444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 454 DAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493 (721)
Q Consensus 454 e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~ 493 (721)
++..+...+......+..++.....+..++.++..+++.+
T Consensus 600 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445555555555555543
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=2.5e-08 Score=122.70 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q psy4651 504 AIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRK----------NHERMQDLVDKLQQKIKTYKR 573 (721)
Q Consensus 504 ~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~----------~~~~l~~~~~~l~~~l~~~~~ 573 (721)
.+..+...+..+...+.........+......+...+..++..+..+.. ....+...+..+...+..+..
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666655444444444444444444444333332222 223344444444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 574 QIEEAEEIAALNLAKFRKAQQELEE 598 (721)
Q Consensus 574 ~lee~~~~~~~l~~~~~~l~~~l~e 598 (721)
.+.++...+..+...+..+...+.+
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.68 E-value=8e-09 Score=123.40 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=77.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy4651 340 QQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAA 419 (721)
Q Consensus 340 ~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~ 419 (721)
..++..++..++++...++.....+.....++..+..++..+...+....+....+..+...+...+.++...+..+...
T Consensus 508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 587 (880)
T PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555556666667777777777776666666777777777777777777777777776
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470 (721)
Q Consensus 420 ~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~ 470 (721)
+..++ .+.++...+.........+...+..+......+...+...+.++.
T Consensus 588 ~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~ 637 (880)
T PRK02224 588 IESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKR 637 (880)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 466666666555555554444444444444444444444444333
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.66 E-value=5.3e-08 Score=120.77 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHhH
Q psy4651 690 KKKLEADINELEIALDH 706 (721)
Q Consensus 690 k~~le~~i~~l~~~l~~ 706 (721)
...+...+..|...+..
T Consensus 995 ~~dl~~~~~~l~~~i~~ 1011 (1164)
T TIGR02169 995 RAKLEEERKAILERIEE 1011 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.66 E-value=3.7e-09 Score=118.55 Aligned_cols=264 Identities=17% Similarity=0.250 Sum_probs=136.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcc------cchHHHHHHHHHHHHHHHHHH
Q psy4651 228 DASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGG------RNIHEVEKARKRLEVEKDELQ 301 (721)
Q Consensus 228 ~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~------~~~~~l~~~~~~le~e~~~l~ 301 (721)
..+..+...+..++..++..++.+...++.+.........++..|...|...+ ..-....+....++..+..+.
T Consensus 117 ~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le 196 (775)
T PF10174_consen 117 ERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLE 196 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555555555555555555555555555443211 111122334444444444444
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4651 302 AALEEAEAALEQEENKV-------------LRAQLEL---SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365 (721)
Q Consensus 302 ~~le~~~~~l~~~e~~~-------------~~~~~~l---~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~ 365 (721)
..++..+.....+...+ ..++..+ ......+++.+..++.++..|+..++-....++.+...+.
T Consensus 197 ~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le 276 (775)
T PF10174_consen 197 SLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLE 276 (775)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 44444433332110000 0111111 1234556666677777777777766644444555544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651 366 IVERRANALQNELEESRQLLEQADRG-------RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438 (721)
Q Consensus 366 ~l~~~~~~l~~ele~~~~~~~~~~~~-------~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~ 438 (721)
........+...++.+...+...... ...+.....+++..|+-+.......+.....|..++..++.+|+...
T Consensus 277 ~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~ 356 (775)
T PF10174_consen 277 VYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN 356 (775)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333444455555444433322 23334444445555555555556666666667777777777777766
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 439 ~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
..+......+..+..+...+..++....+.....+.....|...|+.|...+.
T Consensus 357 ~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 357 SQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666665555544
No 16
>KOG0964|consensus
Probab=99.65 E-value=1.2e-08 Score=111.66 Aligned_cols=269 Identities=18% Similarity=0.221 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRA 93 (721)
Q Consensus 14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~~~ 93 (721)
-+-++....+...-+++..++...+...+..++..+..|..+-.++.. +..++++.+.+++.+.+ .++..+
T Consensus 165 trvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~-Yqkldk~rr~lEYtiYd--------rEl~E~ 235 (1200)
T KOG0964|consen 165 TRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEK-YQKLDKERRSLEYTIYD--------RELNEI 235 (1200)
T ss_pred cchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhHhhhhhhhhh--------hHHHHH
Confidence 356777888888899999999999999999999999999999999887 99999999999999987 454444
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 94 NAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIA 173 (721)
Q Consensus 94 ~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le~~~~~~~~ 173 (721)
+.-. ..+.......... ...+...++ ...+....+....+.+...+..+..+.+++......
T Consensus 236 ~~~l---~~le~~r~~~~e~--------------s~~~~~~~~-~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~ 297 (1200)
T KOG0964|consen 236 NGEL---ERLEEDRSSAPEE--------------SEQYIDALD-KVEDESEDLKCEIKELENKLTNLREEKEQLKARETK 297 (1200)
T ss_pred HHHH---HHHHHHHhccchh--------------hhhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4311 1121111111111 111111122 122233445555667777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy4651 174 LEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQE 253 (721)
Q Consensus 174 le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~ 253 (721)
+-+.+..++..+.+++.++..-...+.........+...+.+....+....+....+..+...+...+..+.....++..
T Consensus 298 ~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~ 377 (1200)
T KOG0964|consen 298 ISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLA 377 (1200)
T ss_pred HHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998888777777777777777777777777777776666666655555555655554444432
Q ss_pred HHH------HHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 254 QLE------AVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309 (721)
Q Consensus 254 ~~e------~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~ 309 (721)
... .......|+..++..+...+.+.......++..+..++.++...-..+..+..
T Consensus 378 Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~ 439 (1200)
T KOG0964|consen 378 KQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELES 439 (1200)
T ss_pred hhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 22345667777777776666666555555555555555444444444433333
No 17
>KOG4674|consensus
Probab=99.64 E-value=4.7e-08 Score=115.99 Aligned_cols=185 Identities=12% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 392 RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT 471 (721)
Q Consensus 392 ~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~ 471 (721)
...|..++......+.++......+..++..+...+..|-.-.... ....+..-+..++.+..-+...+..+......
T Consensus 1101 ~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~--g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1101 EDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLL--GLSDLQNIVSFLRKEKEIAETKLDTLKRENAR 1178 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Confidence 4555566666666666655555555554444444333221111111 12333444444554444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 472 QEKLRKALETQIKELQIRLDEAENNALK------------GGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERR 539 (721)
Q Consensus 472 le~~k~~Le~e~~~L~~~l~~~e~~~~~------------~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~ 539 (721)
|......+...+.+|+.-|......... .....+.-+...-.-|..+++.....+.++...+.+++..
T Consensus 1179 L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~e 1258 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFE 1258 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555432221100 0011122222222334444444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651 540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578 (721)
Q Consensus 540 l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~ 578 (721)
+..+...+.++...+......+..|......++.+..++
T Consensus 1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L 1297 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDL 1297 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444444444444444444443
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=8.8e-08 Score=117.94 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAE 203 (721)
Q Consensus 151 k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e 203 (721)
..+...+..+...+..+......+.+....++..+..+..++...........
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~ 625 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE 625 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555544444444333
No 19
>KOG0996|consensus
Probab=99.62 E-value=3.5e-08 Score=110.66 Aligned_cols=220 Identities=13% Similarity=0.113 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH-HhhchhhhhchHhHHH
Q psy4651 52 LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEW-KLKGSLDFINTLYCLL 130 (721)
Q Consensus 52 l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~~~~~~l~~~~-~l~~~i~~~~~~e~~~ 130 (721)
+......+...+..+.+++..++..... .+..|.+-..+..++.+.+++....+..+.... .....|..++. ++..
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk--~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~-ei~~ 451 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVK--REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQT-EIEQ 451 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHH-HHHH
Confidence 3333344444445555566666655443 445677777777777777777777777665433 33444555544 5665
Q ss_pred HhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 131 FIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210 (721)
Q Consensus 131 l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le 210 (721)
+...++. ....++.....+........+++...+..+.+|........+++....++++.+........+....+.
T Consensus 452 L~~~~~~----~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 452 LEELLEK----EERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHH----HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443 445677778888888888999999999999999999999999999999999999888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhh
Q psy4651 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGE 278 (721)
Q Consensus 211 ~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~ 278 (721)
..|......+.+....++.+...+..+..++......+..+......+......+...+.++...+..
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777776666666666666666666666666666666666665555666666666666666665543
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.51 E-value=8.7e-07 Score=107.91 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 16 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIG 78 (721)
Q Consensus 16 ~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~ 78 (721)
.+.....+....++.....+..+...+..+...+..|..+...... +..+..+...++..+.
T Consensus 169 ~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~-y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 169 KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQELKAELRELELALL 230 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555444444 4455555555554443
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.46 E-value=7.8e-07 Score=100.19 Aligned_cols=73 Identities=23% Similarity=0.377 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK 535 (721)
Q Consensus 462 l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~ 535 (721)
+...+..+..+......|+.++.+....+..+.....+ +-.........+..+...++....++..+...+.+
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~-l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEKELQLEDAKEEASK-LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH-HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333444444444444555555444444433222211 11111223445566666666666666666555554
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=99.45 E-value=2e-06 Score=103.13 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q psy4651 336 IKRYQQQLKDVQTA 349 (721)
Q Consensus 336 ~~~l~~~l~~l~~~ 349 (721)
+..+..++..+..+
T Consensus 461 i~~l~~~~~~l~~~ 474 (880)
T PRK03918 461 LKRIEKELKEIEEK 474 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=99.36 E-value=7.2e-06 Score=98.43 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=7.7
Q ss_pred HHHHHHHhHhHHHHHHHHHH
Q psy4651 255 LEAVRRENKNLADEVKDLLD 274 (721)
Q Consensus 255 ~e~~~~~~~~l~~e~~~l~~ 274 (721)
+..+......+...+..+..
T Consensus 407 i~~l~~~~~~~~~~i~eL~~ 426 (880)
T PRK03918 407 ISKITARIGELKKEIKELKK 426 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=99.06 E-value=0.00017 Score=86.61 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4651 286 VEKARKRLEVEKDELQAALEE 306 (721)
Q Consensus 286 l~~~~~~le~e~~~l~~~le~ 306 (721)
+...+..+...+..+...+.+
T Consensus 421 l~~~i~~l~~~i~~l~~~~~e 441 (895)
T PRK01156 421 ISSKVSSLNQRIRALRENLDE 441 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444443333333
No 25
>KOG0996|consensus
Probab=99.04 E-value=0.00012 Score=83.22 Aligned_cols=163 Identities=18% Similarity=0.295 Sum_probs=71.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 146 LFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAA 225 (721)
Q Consensus 146 le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~ 225 (721)
+++..+.+...+..+..+++.....+..++..-......+..++.+++.+.......+ +.++..+..+..+......
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~---~~l~e~~~~l~~~t~~~~~ 479 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEE---RELDEILDSLKQETEGIRE 479 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHH
Confidence 3333444444444444444444444444444444444445555555444443332222 2233333344444444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 226 ELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALE 305 (721)
Q Consensus 226 ~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le 305 (721)
++...+.++..+...+...+.++......+.-+..........+.+++..|................+...+..++.++.
T Consensus 480 e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 480 EIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44444444444444444555554444444444444444444444555554444333333333333444444444444444
Q ss_pred HHHHHH
Q psy4651 306 EAEAAL 311 (721)
Q Consensus 306 ~~~~~l 311 (721)
+....+
T Consensus 560 ~~~k~l 565 (1293)
T KOG0996|consen 560 EKEKEL 565 (1293)
T ss_pred HHHHhH
Confidence 444433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.03 E-value=0.00027 Score=86.62 Aligned_cols=103 Identities=18% Similarity=0.361 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy4651 504 AIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583 (721)
Q Consensus 504 ~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~ 583 (721)
.+..+...+..+...+.... .....+.....-+...-.+..........+..++..+...+..+...+..+.....
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 847 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVK 847 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665543 33334444555555555555555555555666666666555555555544443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 584 LNLAKFRKAQQELEEAEERADLAEQAVSKI 613 (721)
Q Consensus 584 ~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l 613 (721)
....++...+..+...+..+...+..+
T Consensus 848 ---~~~~~le~~~~~~~~~~~~~~~~l~~l 874 (1201)
T PF12128_consen 848 ---QRRKELEEELKALEEQLEQLEEQLRRL 874 (1201)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444444444444444333
No 27
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=99.01 E-value=8.7e-05 Score=79.50 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651 682 GKAEALRMKKKLEADINELEIALDHANK 709 (721)
Q Consensus 682 ~~~~~~~~k~~le~~i~~l~~~l~~~~~ 709 (721)
.-.++...+.-|+..+..+..-|+....
T Consensus 733 KE~E~~s~k~sLE~ELs~lk~el~slK~ 760 (786)
T PF05483_consen 733 KEQEQSSHKASLELELSNLKNELSSLKK 760 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4446666777777777666655555433
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.95 E-value=0.00015 Score=77.78 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 154 QARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197 (721)
Q Consensus 154 ~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~ 197 (721)
+..+.....+...+......|+.....++.++..+...+.....
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e 185 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444333
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.92 E-value=0.00024 Score=78.58 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANA 201 (721)
Q Consensus 152 ~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~ 201 (721)
..+.+|..++.++..+...+...+..+...-.+++..+.-++.+...+..
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~ 80 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK 80 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566655555555555555555555555555444433
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.90 E-value=0.00021 Score=76.66 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 159 EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWK 217 (721)
Q Consensus 159 ~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~ 217 (721)
-++..++...+....|.+....|+.++..+...++.+...+.........|.....++.
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777677777777777777777766666666666555555444444444333333
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.78 E-value=0.00036 Score=72.71 Aligned_cols=253 Identities=23% Similarity=0.308 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHH
Q psy4651 209 IDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK 288 (721)
Q Consensus 209 le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~ 288 (721)
++.++..++..+..+.. +...+..++..+..++.+....++........+..++..+...+++.......++.
T Consensus 52 ye~el~~lr~~id~~~~-------eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSK-------EKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHH-------HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 44444444444444443 33445555566666666666666666666666666777776666655554445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHh
Q psy4651 289 ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELS-QANAEAQ-KNIKRYQQQLKDVQTALEEEQR-ARDDAREQLG 365 (721)
Q Consensus 289 ~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~-~~~~~~~-~~~~~l~~~l~~l~~~lee~~~-~~~~~~~~~~ 365 (721)
....|..++.-++..++.--..+ ...+. ....+.. .....|..-+.+++..|+.... .+.+++..+
T Consensus 125 ~i~~L~eEl~fl~~~heeEi~~L----------~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y- 193 (312)
T PF00038_consen 125 QIQSLKEELEFLKQNHEEEIEEL----------REQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWY- 193 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----------STT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhhhhhhhhh----------hhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhc-
Confidence 55555555554444333311111 11110 0000000 1123455566666666664332 333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy4651 366 IVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE 445 (721)
Q Consensus 366 ~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e 445 (721)
...+..+.............+..++..++..+..+...+..+......++..|.++...+..... .+.
T Consensus 194 ---------~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~---~~~ 261 (312)
T PF00038_consen 194 ---------QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE---EYQ 261 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred ---------ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH---HHH
Confidence 22333333333333333344445555555555555555555555566666666666665553322 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 446 EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 446 ~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
..+..+..++..+...+.........|-..+-.|..+|.-...-|+
T Consensus 262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4455556666666666666666666677777778877776655443
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.77 E-value=0.00024 Score=74.07 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 365 GIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 365 ~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le 435 (721)
..+.-.+..+..++++++..++.....+..++.++..++..++.....+..++..+..+..++.-++...+
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 33444445555666666666666666666666666776666666666666666666666555555544443
No 33
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.73 E-value=2.5e-05 Score=77.21 Aligned_cols=54 Identities=19% Similarity=0.391 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4651 528 DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEI 581 (721)
Q Consensus 528 ~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~ 581 (721)
.+...+..|...+.++....+...+.+..+...+..+...+...+.....+...
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555444444444433
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.71 E-value=6.3e-05 Score=74.35 Aligned_cols=113 Identities=28% Similarity=0.392 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651 357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436 (721)
Q Consensus 357 ~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~ 436 (721)
..++...+....+++..+...++.....++.+......|+.++..+...+..+.............++..|..|..++..
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444555555555544444444444444444555555555555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 437 LLNEAKNSEEKAKKAMVDAARLADELRAEQDHA 469 (721)
Q Consensus 437 ~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~ 469 (721)
.....+.++..+..+...+..+...|...+...
T Consensus 188 aE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 188 AENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555444444433
No 35
>KOG4643|consensus
Probab=98.68 E-value=0.0015 Score=73.24 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 377 ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le 435 (721)
++++.-.+.-.+....+.|..+.+.|.+.+..+-.....++.--+.+..+...+.....
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445556666666666666666666555555555555555444444433
No 36
>KOG0977|consensus
Probab=98.68 E-value=0.0003 Score=75.47 Aligned_cols=89 Identities=12% Similarity=0.233 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 530 QKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKI----KTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADL 605 (721)
Q Consensus 530 ~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l----~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~ 605 (721)
..++..+...+..+..++.+++..+..+...+..|...+ ..+...|++.+..+..+..+...+-.+++.+-+.-..
T Consensus 295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~ 374 (546)
T KOG0977|consen 295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKIS 374 (546)
T ss_pred HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhH
Confidence 344444455555555555555555555554444444332 3334445555555555555555555555555555556
Q ss_pred HHHHHHHHHhccC
Q psy4651 606 AEQAVSKIRTKGG 618 (721)
Q Consensus 606 ~e~~~~~l~~~~~ 618 (721)
+..++...|.-++
T Consensus 375 Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 375 LDAEIAAYRKLLE 387 (546)
T ss_pred HHhHHHHHHHHhc
Confidence 6666655565554
No 37
>KOG0977|consensus
Probab=98.66 E-value=0.00036 Score=74.86 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492 (721)
Q Consensus 447 ~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~ 492 (721)
.......++..+...+..++.++..++..+..|...|.+|..+++.
T Consensus 290 ~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 290 EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 3444556666777777777788888888888888888888887774
No 38
>KOG4643|consensus
Probab=98.57 E-value=0.0031 Score=70.80 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy4651 13 TKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKV-------- 84 (721)
Q Consensus 13 ~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~-------- 84 (721)
+.-.|...|+.+...+-.+++.+.+-......+..++..+..++..+......+....+.|..-..++..-.
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~ 250 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDT 250 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCC
Confidence 345566677777777777777777666666667777777777776666666555554444443322211100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHH
Q psy4651 85 SLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETI 164 (721)
Q Consensus 85 ~l~~e~~~~~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~l 164 (721)
.+..-+-...-+....+.+..+-.-+.+.. .-++. .+..++.+-+ ...++...-+++..+..+..+.
T Consensus 251 ~ykerlmDs~fykdRveelkedN~vLleek------eMLee-QLq~lrarse------~~tleseiiqlkqkl~dm~~er 317 (1195)
T KOG4643|consen 251 TYKERLMDSDFYKDRVEELKEDNRVLLEEK------EMLEE-QLQKLRARSE------GATLESEIIQLKQKLDDMRSER 317 (1195)
T ss_pred ccchhhhhhHHHHHHHHHHHhhhHHHHHHH------HHHHH-HHHHHHhccc------cCChHHHHHHHHHHHHHHHHhh
Confidence 011111111111111111111111111110 00001 1222222221 1567777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 165 ESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197 (721)
Q Consensus 165 e~~~~~~~~le~~~~~le~ei~~l~~~le~~~~ 197 (721)
+..+.+.+.|..+...|+..-+.|....+.+..
T Consensus 318 dtdr~kteeL~eEnstLq~q~eqL~~~~ellq~ 350 (1195)
T KOG4643|consen 318 DTDRHKTEELHEENSTLQVQKEQLDGQMELLQI 350 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Confidence 888888888888888887777777666665554
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.55 E-value=0.0072 Score=74.33 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy4651 149 PRRKLQARLAEAEETIESLNQKVIALEKTKQRLAT-EVEDLQLEVDRA 195 (721)
Q Consensus 149 ~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~-ei~~l~~~le~~ 195 (721)
....+...+..+...+......+..++..+...+. .|..+...++.+
T Consensus 307 ~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l 354 (1201)
T PF12128_consen 307 LRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQL 354 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 34444455555555555555555555555555543 344444444433
No 40
>KOG0971|consensus
Probab=98.53 E-value=0.0035 Score=69.38 Aligned_cols=160 Identities=22% Similarity=0.296 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQ 322 (721)
Q Consensus 243 ~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~ 322 (721)
.|..++...+.....+......+..++.++.+.++=.+-.++..+..-..|..++..++..+++++-.++.+.
T Consensus 280 ~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK------- 352 (1243)
T KOG0971|consen 280 DLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK------- 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3333333444444444444444455555555444432222223333334444444445555555444443321
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 323 LELSQ----ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETE 398 (721)
Q Consensus 323 ~~l~~----~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~e 398 (721)
.++.. +-....-+.+.++.+...|+.-+=.++...........++.+++.....++.+++...+.+.+....++..
T Consensus 353 aEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~ 432 (1243)
T KOG0971|consen 353 AEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAEST 432 (1243)
T ss_pred HHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 00111234566777776666655544444444455566778888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q psy4651 399 LADAHEQLNEL 409 (721)
Q Consensus 399 l~~l~~~l~~~ 409 (721)
+.+++++++..
T Consensus 433 iadlkEQVDAA 443 (1243)
T KOG0971|consen 433 IADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHh
Confidence 88888888753
No 41
>KOG0976|consensus
Probab=98.52 E-value=0.0032 Score=68.71 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 416 ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN 495 (721)
Q Consensus 416 l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~ 495 (721)
+.....++..++.+++..|-+.....+.+.+.+..+......+...+..++......+..+..|-.....++.+++.+..
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555554433
No 42
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.47 E-value=0.005 Score=68.30 Aligned_cols=132 Identities=14% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy4651 420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK 499 (721)
Q Consensus 420 ~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~ 499 (721)
+..+..++...+..|+........+...+..+..++...+..+...+.+..........|..++..+...|..+.....
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~- 361 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE- 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc-
Confidence 4444444444444444444444444444444444444444444444444444444444444455444444443221111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 500 GGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRK 552 (721)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~ 552 (721)
.....+..+...+..+..+.+...........++..+...+......+.....
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEE 414 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333444444444444444444444444444444444444443333333
No 43
>KOG0933|consensus
Probab=98.45 E-value=0.0064 Score=68.55 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651 508 LEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLA 587 (721)
Q Consensus 508 ~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~ 587 (721)
-+..+..+.-+.+.+...+......+..+...+..+...+..+...+......+..+...+...+..+.+....+..+..
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~ 892 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT 892 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence 34445555666666666666666666666666666666666666666666666666666666666666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 588 KFRKAQQELEEAEERADLAEQAVSKIR 614 (721)
Q Consensus 588 ~~~~l~~~l~e~e~~~~~~e~~~~~l~ 614 (721)
............+-.+..++..++.+.
T Consensus 893 ~~e~~~~e~~~~~l~~kkle~e~~~~~ 919 (1174)
T KOG0933|consen 893 SQEKCLSEKSDGELERKKLEHEVTKLE 919 (1174)
T ss_pred HHHHHHHHhhcccchHHHHHhHHHHhh
Confidence 555555555555555555555554443
No 44
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.34 E-value=0.0081 Score=64.96 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 32 NQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGE 79 (721)
Q Consensus 32 ~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~ 79 (721)
-.....+..|+-.++.++..-...+.+....+....+....|++....
T Consensus 84 ~~EaEKIk~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~ 131 (786)
T PF05483_consen 84 YKEAEKIKKWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEK 131 (786)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334445666777777777777777777777777777666666665554
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.26 E-value=0.017 Score=65.14 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy4651 388 ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440 (721)
Q Consensus 388 ~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~ 440 (721)
+......+...++.|-+.++....+...+......+...+..+..........
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555554444444444444444433333
No 46
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.19 E-value=0.023 Score=64.15 Aligned_cols=90 Identities=8% Similarity=0.012 Sum_probs=38.5
Q ss_pred HHHHhhhhhhhhhcCCCccchhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 128 CLLFIPFLNEKSLKHPYPLFFPRRKLQARLA-----EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAA 202 (721)
Q Consensus 128 ~~~l~~~le~~~~~~~~~le~~~k~l~~~l~-----~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~ 202 (721)
+..|+..++.=.......++...-.....+. .....+..+...++..+.....+...+.+|...-.........+
T Consensus 66 f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l 145 (569)
T PRK04778 66 FEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQL 145 (569)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666653122233333333333333222 22333444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 203 EKKAKAIDKIIGEWK 217 (721)
Q Consensus 203 e~~~~~le~~l~e~~ 217 (721)
....+.+...+.+..
T Consensus 146 ~~~y~~~rk~ll~~~ 160 (569)
T PRK04778 146 KDLYRELRKSLLANR 160 (569)
T ss_pred HHHHHHHHHHHHhcC
Confidence 444444444444333
No 47
>KOG0976|consensus
Probab=98.18 E-value=0.019 Score=62.92 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 471 TQEKLRKALETQIKELQIRLDEA 493 (721)
Q Consensus 471 ~le~~k~~Le~e~~~L~~~l~~~ 493 (721)
.|-..-..++.+++.+...+-.+
T Consensus 383 sL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 383 SLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333344555555555555433
No 48
>KOG0971|consensus
Probab=98.12 E-value=0.028 Score=62.59 Aligned_cols=116 Identities=20% Similarity=0.260 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q psy4651 369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS-ISAAKRKLEGELQTLHSDLDELLNEAKNSEEK 447 (721)
Q Consensus 369 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~-l~~~~~~le~el~~lk~~le~~~~~~~~~e~~ 447 (721)
.+...|+.+++.++. ....|+.+++.|+..+++-...... -.-+.+.++.+...|+.-+-.+..........
T Consensus 325 ERaesLQ~eve~lkE-------r~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d 397 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKE-------RVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQD 397 (1243)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 344445555555443 3345667788888777765433311 12244555555555555554443333322233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 448 AKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 448 ~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
..++..++.....++..+....+.|.+....++..|.+|+.+++
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555
No 49
>KOG0964|consensus
Probab=98.11 E-value=0.033 Score=62.81 Aligned_cols=117 Identities=11% Similarity=0.163 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy4651 160 AEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYST 239 (721)
Q Consensus 160 l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~ 239 (721)
....++.....+..+...+..++..+..|..+.+.+.......-++.-.|+-.+..++..+.........+...+..+..
T Consensus 256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 33444555555556666666666666666666666655555555555555656666666555444444444444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy4651 240 ELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276 (721)
Q Consensus 240 e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l 276 (721)
.+..-..++....-.+..+...-..+...+..|....
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~ 372 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ 372 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555555555555555433
No 50
>KOG0612|consensus
Probab=98.05 E-value=0.052 Score=62.94 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEK 474 (721)
Q Consensus 395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~ 474 (721)
++.++..+...+.........+ .+..-+.++..+...+.+....+..++.....+..++..|...+...+.....+.+
T Consensus 672 ~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r 749 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRR 749 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhh
Confidence 3333344444444433333333 22222666777777777777777777777788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 475 LRKALETQIKELQIRLDEA 493 (721)
Q Consensus 475 ~k~~Le~e~~~L~~~l~~~ 493 (721)
....+..++..|+..|+..
T Consensus 750 ~~~~~~~~vl~Lq~~LEqe 768 (1317)
T KOG0612|consen 750 SKDQLITEVLKLQSMLEQE 768 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888753
No 51
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.01 E-value=5.7e-05 Score=87.62 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 596 LEEAEERADLAEQAV 610 (721)
Q Consensus 596 l~e~e~~~~~~e~~~ 610 (721)
++.+......+...+
T Consensus 568 l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 568 LEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 52
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.98 E-value=0.054 Score=60.69 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 169 QKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 207 (721)
Q Consensus 169 ~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~ 207 (721)
.....|......+..++..|..+..........++..+.
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~ 60 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLS 60 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554444444444444433
No 53
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.98 E-value=3.5e-05 Score=89.41 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQ---RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD-------AHE 404 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~---~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~-------l~~ 404 (721)
++..|+.++..|..-+.... ....++...+..+..+...+...+..+...+..+......|+.++.. +..
T Consensus 313 e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~ 392 (722)
T PF05557_consen 313 ENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEA 392 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666655333321 11222333333333333334444444443333333333334333333 333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDE 436 (721)
Q Consensus 405 ~l~~~~~~~~~l~~~~~~le~el~~lk~~le~ 436 (721)
.+......+..++.++.-+..++..++..|..
T Consensus 393 ~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~s 424 (722)
T PF05557_consen 393 SLEALKKLIRRLERQKALATKERDYLRAQLKS 424 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444445555555555553
No 54
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.89 E-value=0.041 Score=56.41 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 162 ETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWK 217 (721)
Q Consensus 162 ~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~ 217 (721)
.+.-.+...+..+.+....+..+.+.+..++......+..++.-++.|+.....+.
T Consensus 36 ~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 36 EEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555555555555554444443333
No 55
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.82 E-value=0.04 Score=54.11 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy4651 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTL 430 (721)
Q Consensus 370 ~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~l 430 (721)
.++.+....+-+..++..+...-..|+.++-..++.|-+-.-....+.+.+.....++.++
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~ 198 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI 198 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555554443333333333333333333333
No 56
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.79 E-value=4.9e-06 Score=96.13 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 377 ELEESRQLLEQADRGRRQAETELADAHEQ 405 (721)
Q Consensus 377 ele~~~~~~~~~~~~~~~l~~el~~l~~~ 405 (721)
++..+...+..+...+..+..+.+.+++.
T Consensus 392 e~~~L~ek~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 392 ENKQLEEKLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444433
No 57
>KOG0612|consensus
Probab=97.76 E-value=0.16 Score=59.22 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy4651 594 QELEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 594 ~~l~e~e~~~~~~e~~~~~l~~~ 616 (721)
.....+.+....++..+..|+..
T Consensus 714 ~ar~k~e~~~~~i~~e~e~L~~d 736 (1317)
T KOG0612|consen 714 SAREKAENLLLEIEAELEYLSND 736 (1317)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444455555555444
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.73 E-value=0.056 Score=61.55 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493 (721)
Q Consensus 461 ~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~ 493 (721)
.|...+..++.++.....-+.+|.+|..+|.++
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666677777887777754
No 59
>KOG0978|consensus
Probab=97.71 E-value=0.14 Score=57.10 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy4651 86 LQLEVDRAN 94 (721)
Q Consensus 86 l~~e~~~~~ 94 (721)
++-+++...
T Consensus 102 ~~~d~eki~ 110 (698)
T KOG0978|consen 102 LQADLEKIR 110 (698)
T ss_pred HHHHHHHHH
Confidence 444444433
No 60
>KOG0994|consensus
Probab=97.65 E-value=0.21 Score=57.50 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 54 LEVDRANAIANAAEKKAKAIDKII 77 (721)
Q Consensus 54 ~~l~~~~~~~~~l~~~~~~le~~~ 77 (721)
..++.++.....+....+.|...+
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.60 E-value=0.032 Score=50.07 Aligned_cols=130 Identities=25% Similarity=0.356 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQ 322 (721)
Q Consensus 243 ~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~ 322 (721)
.++.+.+.+....+.+...++.+......+...|. .|......++.++..+...+..+...+........
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~-------sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~--- 73 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEIT-------SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS--- 73 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---
Confidence 34444445555555555445555555555444444 44444455555555555555554444433322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ 387 (721)
Q Consensus 323 ~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~ 387 (721)
....+.+.+..|+.++......|......+..+......+++.+..|..+.+.|...++.
T Consensus 74 -----~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 74 -----NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred -----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 112445555555665555555555555555555544455555555555555555544443
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.53 E-value=0.2 Score=57.22 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601 (721)
Q Consensus 566 ~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~ 601 (721)
.-+...+++++.+...+-.-+.++.+|...+.++..
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444555555555555543
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.51 E-value=0.14 Score=58.18 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy4651 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE 445 (721)
Q Consensus 397 ~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e 445 (721)
..+..++..++.+......+..++..+...+..+...++.....+..+.
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~ 261 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLN 261 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4455556666666655565666666666666555554444433333333
No 64
>KOG0994|consensus
Probab=97.50 E-value=0.33 Score=55.97 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=14.7
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDA 455 (721)
Q Consensus 425 ~el~~lk~~le~~~~~~~~~e~~~~~l~~e~ 455 (721)
.+|..+..++.+....+...+..+......+
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di 1541 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDI 1541 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhH
Confidence 3455555555555444444444444444333
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.48 E-value=0.3 Score=54.97 Aligned_cols=110 Identities=14% Similarity=0.247 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHH
Q psy4651 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD---------KLQQKIKTYKRQIE 576 (721)
Q Consensus 506 ~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~---------~l~~~l~~~~~~le 576 (721)
+.+...+..+...++........+...+..+...-..++..+......+..+...+. .+...+......+.
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~ 454 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIE 454 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 334444444555555544444444444444444444444444444444444333332 22233444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4651 577 EAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRT 615 (721)
Q Consensus 577 e~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~ 615 (721)
.+...++...-.+..+.+.+..+...+..+......+-.
T Consensus 455 ~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~ 493 (560)
T PF06160_consen 455 ELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELID 493 (560)
T ss_pred HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544455556666666666666666666654433
No 66
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.45 E-value=0.62 Score=57.94 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy4651 567 KIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVA 621 (721)
Q Consensus 567 ~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~~~ 621 (721)
.+..+......+..........+......+..+...+..+...+..+...+..+|
T Consensus 993 ~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 993 RLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333333333344444444444444444444444444444444444
No 67
>PRK11637 AmiB activator; Provisional
Probab=97.44 E-value=0.24 Score=53.93 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le 435 (721)
++..+..+...+.+.......|..........+..+.....
T Consensus 189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~ 229 (428)
T PRK11637 189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQ 229 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 68
>KOG0250|consensus
Probab=97.42 E-value=0.43 Score=55.41 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=11.6
Q ss_pred hhchHHHHHhHhhHHHHHHHHHHh
Q psy4651 652 FLLEEEFENTRKNHQRALDSMQAS 675 (721)
Q Consensus 652 ~~~~ee~e~~rk~~~~~v~~l~~~ 675 (721)
..+...++..++.++....-.++.
T Consensus 926 ~~R~~~~qk~r~~~~~~~~~~F~~ 949 (1074)
T KOG0250|consen 926 ESREQKYQKFRKLLTRRATEEFDA 949 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444443
No 69
>KOG0250|consensus
Probab=97.32 E-value=0.56 Score=54.50 Aligned_cols=132 Identities=16% Similarity=0.280 Sum_probs=73.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy4651 146 LFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKII-GEWKLKVDDLA 224 (721)
Q Consensus 146 le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l-~e~~~~~~~~~ 224 (721)
++.....+.........+++.+...+..+......++.++.+....+.........+++.+..+..+. ..+...+.+..
T Consensus 321 iea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e 400 (1074)
T KOG0250|consen 321 IEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERE 400 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 33334444445555555566666666666666666666666666666666666666666555555555 45555555555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Q psy4651 225 AELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIG 277 (721)
Q Consensus 225 ~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~ 277 (721)
..+..+..++..++..+..|+.++.++.................+.++...+.
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555556666655555555554444444444444444444443
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.31 E-value=0.89 Score=56.60 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 564 LQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAV 610 (721)
Q Consensus 564 l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~ 610 (721)
+...+..-+.....+...+.....++..+...+......+......+
T Consensus 1065 l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I 1111 (1486)
T PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111 (1486)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443333
No 71
>KOG0018|consensus
Probab=97.28 E-value=0.59 Score=53.99 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 162 ETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEK 204 (721)
Q Consensus 162 ~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~ 204 (721)
..+......+...+.........++.+..++..+.......++
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fek 345 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEK 345 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555554444444433
No 72
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.27 E-value=0.23 Score=48.99 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4651 415 SISAAKRKLEGELQTLHSDLDELLNEAK 442 (721)
Q Consensus 415 ~l~~~~~~le~el~~lk~~le~~~~~~~ 442 (721)
.++..+..++.+-..|+.+|+++....+
T Consensus 218 s~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555554444433
No 73
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.21 E-value=0.28 Score=48.81 Aligned_cols=8 Identities=50% Similarity=0.721 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy4651 484 KELQIRLD 491 (721)
Q Consensus 484 ~~L~~~l~ 491 (721)
.+|...+.
T Consensus 141 ~~L~k~le 148 (294)
T COG1340 141 KELRKELE 148 (294)
T ss_pred HHHHHHHH
Confidence 33333333
No 74
>PRK11637 AmiB activator; Provisional
Probab=97.21 E-value=0.48 Score=51.60 Aligned_cols=13 Identities=8% Similarity=0.371 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy4651 370 RANALQNELEESR 382 (721)
Q Consensus 370 ~~~~l~~ele~~~ 382 (721)
.+..+..++....
T Consensus 48 ~l~~l~~qi~~~~ 60 (428)
T PRK11637 48 QLKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.19 E-value=0.16 Score=45.62 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy4651 397 TELADAHEQLN 407 (721)
Q Consensus 397 ~el~~l~~~l~ 407 (721)
..+..+...++
T Consensus 56 ~~l~~~k~~le 66 (143)
T PF12718_consen 56 EQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 76
>KOG4673|consensus
Probab=97.19 E-value=0.52 Score=51.44 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4651 657 EFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEI 702 (721)
Q Consensus 657 e~e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~ 702 (721)
..+.++.+|+..+.-+=+..+.-...+-++.-.|..+-.+|++|-.
T Consensus 912 ~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl~ 957 (961)
T KOG4673|consen 912 ELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQIDELLN 957 (961)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4455666666665555555555566777888888888888888744
No 77
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.17 E-value=0.00013 Score=84.57 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS 415 (721)
Q Consensus 374 l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ 415 (721)
+..++.++...+.........+..++..+.+.+..+......
T Consensus 368 ~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~ 409 (713)
T PF05622_consen 368 YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKER 409 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555544444333
No 78
>KOG4673|consensus
Probab=97.11 E-value=0.61 Score=50.91 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 13 TKRKLQARLAEAEETIESLNQKVIALEKTKQRLA 46 (721)
Q Consensus 13 ~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~ 46 (721)
...++...|..|.+.|+.-....-.....+.-+.
T Consensus 347 eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~le 380 (961)
T KOG4673|consen 347 ELDKTKKEIKMLNNALEAREAQLLADEIAKAMLE 380 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666544444443333333333
No 79
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.11 E-value=0.79 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4651 289 ARKRLEVEKDELQAALEEAEA 309 (721)
Q Consensus 289 ~~~~le~e~~~l~~~le~~~~ 309 (721)
....+...+..++.++..+..
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~ 320 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDT 320 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.06 E-value=0.34 Score=47.08 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy4651 181 LATEVEDL 188 (721)
Q Consensus 181 le~ei~~l 188 (721)
+..++..+
T Consensus 36 ~~~e~e~~ 43 (239)
T COG1579 36 AKAELEAL 43 (239)
T ss_pred HHHHHHHH
Confidence 33333333
No 81
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.06 E-value=0.47 Score=48.72 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651 372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438 (721)
Q Consensus 372 ~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~ 438 (721)
.....-+...+...+.+.+..+.++.+...++..++.....+..+.........++..++.+++...
T Consensus 233 ~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 233 NKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555666666777777777777777666666666655556556665555554443
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.03 E-value=0.27 Score=45.41 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy4651 339 YQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEES 381 (721)
Q Consensus 339 l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~ 381 (721)
+..++.+|+.-+-.+......+..+.+.++++...|..+++.+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333344444444444444444444443
No 83
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.03 E-value=0.87 Score=51.30 Aligned_cols=57 Identities=11% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKV 220 (721)
Q Consensus 164 le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~ 220 (721)
+..+...++.++.....+..++.+|...=...+.....+....+.+...+......+
T Consensus 103 i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~ 159 (560)
T PF06160_consen 103 IKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY 159 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333444444444444444444444444333333333444444444444444444333
No 84
>KOG1003|consensus
Probab=96.99 E-value=0.28 Score=45.06 Aligned_cols=133 Identities=23% Similarity=0.342 Sum_probs=60.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438 (721)
Q Consensus 359 ~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~ 438 (721)
.++.....++.++..+..++.+.+.-.+.+.+.+......|-.....|+........-+..+..+..++..+...+..+.
T Consensus 50 v~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~ 129 (205)
T KOG1003|consen 50 VIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS 129 (205)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 33333334444444444455444444444444443333333333333333333333333333344444444444444333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 439 ~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
..-+.+......+...+..+...|.....+-...++....|+..+++|...+.
T Consensus 130 ~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 130 AKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 33333333334444444445555555555555556666666666666655555
No 85
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.89 E-value=0.36 Score=44.57 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 455 AARLADELRAEQDHAQTQEKLRKALETQI 483 (721)
Q Consensus 455 ~~~l~~~l~~~~~~~~~le~~k~~Le~e~ 483 (721)
+..+...+...+.-...+.-++..|+..+
T Consensus 160 i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 160 IEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444443
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.74 E-value=0.76 Score=46.19 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651 283 IHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE 362 (721)
Q Consensus 283 ~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~ 362 (721)
...|++..+.|+.+...++.+...+.......+..-..+=..+-..-..+..++..|...+..-...+...+.++..+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888877777777766543333322111111122222333334444444444444444444444444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 363 QLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL 409 (721)
Q Consensus 363 ~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~ 409 (721)
++..++.+++.+..+.+++...+.........|..++.++++++.+.
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554444444444455555444444443
No 87
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.69 E-value=1.7 Score=49.49 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 25 EETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGE 79 (721)
Q Consensus 25 ~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~ 79 (721)
...|.++...+..+...+.....+...|......+...+..++.++..+...+.+
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444444444444444444
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.67 E-value=0.7 Score=44.92 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4651 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA 497 (721)
Q Consensus 443 ~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~ 497 (721)
.....+.++..+++.+...+......+..++.....++.++.++..++...+...
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666677777777777777777778877777777654333
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.62 E-value=0.45 Score=42.11 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 291 KRLEVEKDELQAALEEA 307 (721)
Q Consensus 291 ~~le~e~~~l~~~le~~ 307 (721)
..|...+...+..++++
T Consensus 83 ~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 90
>PRK09039 hypothetical protein; Validated
Probab=96.62 E-value=1 Score=47.16 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 403 HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465 (721)
Q Consensus 403 ~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~ 465 (721)
...|.......+.....+..+..+|..|+.++......++.++......+..+..+...+...
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444445555555555555444444444444445555555555544443
No 91
>KOG0995|consensus
Probab=96.60 E-value=1.4 Score=47.60 Aligned_cols=8 Identities=38% Similarity=0.601 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy4651 163 TIESLNQK 170 (721)
Q Consensus 163 ~le~~~~~ 170 (721)
+++.+...
T Consensus 236 ~ie~l~~~ 243 (581)
T KOG0995|consen 236 EIEDLKKT 243 (581)
T ss_pred HHHHHHHH
Confidence 33333333
No 92
>KOG0995|consensus
Probab=96.49 E-value=1.7 Score=47.08 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 284 HEVEKARKRLEVEKDELQAALEEAEAALEQE 314 (721)
Q Consensus 284 ~~l~~~~~~le~e~~~l~~~le~~~~~l~~~ 314 (721)
.++......+++.+..++.+++..+.+++.+
T Consensus 283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555544443
No 93
>PRK09039 hypothetical protein; Validated
Probab=96.41 E-value=1.5 Score=45.83 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy4651 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQ 275 (721)
Q Consensus 246 ~ele~~~~~~e~~~~~~~~l~~e~~~l~~~ 275 (721)
.++......+......+..|..+|..|+.+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444443
No 94
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.36 E-value=0.67 Score=41.04 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 523 QRRHADAQKNLRKTERRIKELSFQA 547 (721)
Q Consensus 523 ~~~~~~~~~~~~~l~~~l~el~~~l 547 (721)
......+...+..+++.+..+....
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~ 40 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENK 40 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhH
Confidence 3333333333333333333333333
No 95
>KOG1003|consensus
Probab=96.24 E-value=0.97 Score=41.70 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 537 ERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK 572 (721)
Q Consensus 537 ~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~ 572 (721)
...+.+.....+...+.+..|...++.+...+...+
T Consensus 150 tdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 150 TDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 334444444444444444444444444444433333
No 96
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.18 E-value=2.8 Score=46.50 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 394 QAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQD 467 (721)
Q Consensus 394 ~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~ 467 (721)
.|..++...+.........+...+..++.+..-+..+..-+......++..-..+..+...+......+..++.
T Consensus 377 tLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqG 450 (739)
T PF07111_consen 377 TLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQG 450 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHH
Confidence 45555555555555555555555555554444444444444433333333333444444444444444444433
No 97
>KOG0946|consensus
Probab=96.06 E-value=3.5 Score=46.43 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 477 KALETQIKELQIRLD 491 (721)
Q Consensus 477 ~~Le~e~~~L~~~l~ 491 (721)
..|..-+.+|..+..
T Consensus 928 ~alk~~l~dL~q~~e 942 (970)
T KOG0946|consen 928 QALKEALEDLNQPVE 942 (970)
T ss_pred HHHHHHHHHhCCChh
Confidence 344444555554443
No 98
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.02 E-value=1.9 Score=43.04 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q psy4651 283 IHEVEKARKRLE 294 (721)
Q Consensus 283 ~~~l~~~~~~le 294 (721)
+..+.+.+..|+
T Consensus 109 ~~~ler~i~~Le 120 (294)
T COG1340 109 IKSLEREIERLE 120 (294)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.97 E-value=2.1 Score=43.14 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470 (721)
Q Consensus 391 ~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~ 470 (721)
..+.|+.++..|+.....+.......+.+-..+ |.++-.++..+...+..+.+.+.....+......++..+.+.+.
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333222222 22233333333333333333333333333333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4651 471 TQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 471 ~le~~k~~Le~e~~~L~~~l~ 491 (721)
.+....+.+-.+.++|...|.
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 444444444444444444443
No 100
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.85 E-value=1.6 Score=42.42 Aligned_cols=119 Identities=20% Similarity=0.287 Sum_probs=63.7
Q ss_pred HhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 261 ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ 340 (721)
Q Consensus 261 ~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~ 340 (721)
....|..+...|...++ .+++.+..+..++.--..++.-+++.+..+ .+++..|+
T Consensus 61 e~s~LkREnq~l~e~c~-------~lek~rqKlshdlq~Ke~qv~~lEgQl~s~------------------Kkqie~Le 115 (307)
T PF10481_consen 61 EYSALKRENQSLMESCE-------NLEKTRQKLSHDLQVKESQVNFLEGQLNSC------------------KKQIEKLE 115 (307)
T ss_pred hhhhhhhhhhhHHHHHH-------HHHHHHHHhhHHHhhhHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence 33444444444444443 566666666666655555555555554433 23456677
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH---HhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 341 QQLKDVQTALEEEQRARDDAREQ---LGIVERRA--------NALQNELEESRQLLEQADRGRRQAETELADAHE 404 (721)
Q Consensus 341 ~~l~~l~~~lee~~~~~~~~~~~---~~~l~~~~--------~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~ 404 (721)
+++..++.+|+..+......... ....++-. ......+++++..+......+++|+.++..|+.
T Consensus 116 qelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 116 QELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 77777777777655544332211 11111111 122355666777777666677777777776663
No 101
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.78 E-value=1.8 Score=41.02 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4651 369 RRANALQNELEESRQLLE 386 (721)
Q Consensus 369 ~~~~~l~~ele~~~~~~~ 386 (721)
..+..+..++..+...+.
T Consensus 171 ~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 102
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.76 E-value=3.2 Score=43.61 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK 535 (721)
Q Consensus 456 ~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~ 535 (721)
..|.......+.++..|...+-.|+..+++|+..+.... -+-..|.+++..+.+|-..--...=+..++.+.+..
T Consensus 320 ~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq-----vfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn 394 (527)
T PF15066_consen 320 QKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ-----VFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN 394 (527)
T ss_pred HHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence 334444455556677778888888889998887766422 222357777777777776666666667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy4651 536 TERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEE 577 (721)
Q Consensus 536 l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee 577 (721)
+...+...+.+|.+.+.+...++-++.++....-.++.+.-.
T Consensus 395 Lqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 395 LQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888888888888888888888887777777766666554433
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.70 E-value=4.8 Score=45.25 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEK 204 (721)
Q Consensus 150 ~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~ 204 (721)
...-..++..++.+++.+...+..+...+..+...+..+..++.........++.
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666655555555555555555554444444433
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.65 E-value=5 Score=45.12 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=61.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 411 AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD-------AARLADELRAEQDHAQTQEKLRKALETQI 483 (721)
Q Consensus 411 ~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e-------~~~l~~~l~~~~~~~~~le~~k~~Le~e~ 483 (721)
..+..|+..+......+..|..+++.... .+.+.++.+... ......++..++..+..+..+...-+...
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~ 470 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELY 470 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554332 222233333222 22223333344444444444444444444
Q ss_pred HHHHHHHHHHHHhH-hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 484 KELQIRLDEAENNA-LKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549 (721)
Q Consensus 484 ~~L~~~l~~~e~~~-~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~ 549 (721)
..|...+..+.... +..+-.-|.++-+.+..-..+++..-.+.+.+++++..+...+.-.-.-.++
T Consensus 471 ~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 471 KQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444444322111 1233334555555566666666666666666666666655555444333333
No 105
>KOG1029|consensus
Probab=95.57 E-value=5.2 Score=44.74 Aligned_cols=6 Identities=33% Similarity=-0.036 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy4651 545 FQAEED 550 (721)
Q Consensus 545 ~~l~~~ 550 (721)
.+++++
T Consensus 549 dqldel 554 (1118)
T KOG1029|consen 549 DQLDEL 554 (1118)
T ss_pred HHHHHH
Confidence 333333
No 106
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.51 E-value=2.4 Score=40.47 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI 416 (721)
Q Consensus 337 ~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l 416 (721)
...+.....|..++++.......+..-+..+++-+..+..+.... ..........+..+.+.+...+..+..+.+.+
T Consensus 19 ~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl 95 (207)
T PF05010_consen 19 AEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQAYADLNSLEKSFSDL 95 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHH
Confidence 334455566666666666655555555555555555444432222 22222334445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q psy4651 417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK 449 (721)
Q Consensus 417 ~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~ 449 (721)
.....++...+..++..-+.+...+......+.
T Consensus 96 ~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~ 128 (207)
T PF05010_consen 96 HKRYEKQKEVIEGYKKNEETLKKCIEEYEERLK 128 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555555555555555544444333333333333
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.40 E-value=2.5 Score=40.08 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q psy4651 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK 449 (721)
Q Consensus 370 ~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~ 449 (721)
.+..|.+++.++...+.++....+-|..---.....+......-+.+-.-+.....+|..|+..+-........++..++
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444333222221111222233333333344444555555666666666555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy4651 450 KAMVDAARLADE 461 (721)
Q Consensus 450 ~l~~e~~~l~~~ 461 (721)
....++..+...
T Consensus 93 ~~~~el~k~~~~ 104 (194)
T PF15619_consen 93 DKDEELLKTKDE 104 (194)
T ss_pred HHHHHHHHHHHH
Confidence 544444444333
No 108
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.36 E-value=6.8 Score=44.73 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy4651 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHER----------------------MQDLVDKLQQKIKTYKRQIEEAEEIA 582 (721)
Q Consensus 525 ~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~----------------------l~~~~~~l~~~l~~~~~~lee~~~~~ 582 (721)
+...+..++-+|+.-+..-..+|..++.-+.. ..+-..+++.+++.++.....+..-.
T Consensus 584 d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlR 663 (717)
T PF09730_consen 584 DKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLR 663 (717)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665555555555433221 11222334444444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 583 ALNLAKFRKAQQELEEAEERADLAEQAVSKI 613 (721)
Q Consensus 583 ~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l 613 (721)
+=+-+...++..+++++...+..++.+...|
T Consensus 664 amFa~RCdEYvtQldemqrqL~aAEdEKKTL 694 (717)
T PF09730_consen 664 AMFAARCDEYVTQLDEMQRQLAAAEDEKKTL 694 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333444555556666666666665555433
No 109
>KOG0978|consensus
Probab=95.33 E-value=6.5 Score=44.38 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 511 RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDR 551 (721)
Q Consensus 511 ~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~ 551 (721)
.+..++..+...+.....+..++..+...+.......-++.
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~ 565 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAK 565 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333333333333333333333
No 110
>KOG0018|consensus
Probab=95.08 E-value=9.2 Score=44.74 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 165 ESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWK 217 (721)
Q Consensus 165 e~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~ 217 (721)
......+...++.+...+.........++.+......+......++.++....
T Consensus 299 ~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~ 351 (1141)
T KOG0018|consen 299 SHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS 351 (1141)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555555555544433
No 111
>KOG0980|consensus
Probab=94.68 E-value=10 Score=43.34 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q psy4651 369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKA 448 (721)
Q Consensus 369 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~ 448 (721)
+.....+..++.++..+..+....-.+-..+++...+++.....+..+......+...+..+...........+.....+
T Consensus 417 ~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~l 496 (980)
T KOG0980|consen 417 NKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKAL 496 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444433333333333333
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 449 KKAMVDAARLADELRAE 465 (721)
Q Consensus 449 ~~l~~e~~~l~~~l~~~ 465 (721)
..+..++.-+..++..+
T Consensus 497 e~l~~El~~l~~e~~~l 513 (980)
T KOG0980|consen 497 ESLRQELALLLIELEEL 513 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 112
>KOG0963|consensus
Probab=94.59 E-value=8.9 Score=42.19 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL 409 (721)
Q Consensus 330 ~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~ 409 (721)
..+..++..++..+..++..+........++... ...+.....+++.-+-..++.+......++.+++.+..++...
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~---~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK---YDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444544444444444433333322 1222333333333333333333334444445555555444432
Q ss_pred HHh--------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 410 SAQ--------ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT 471 (721)
Q Consensus 410 ~~~--------~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~ 471 (721)
... +..+...+...+..+..|-..+........ ..+.....+|..+..++......+..
T Consensus 269 N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~---~e~e~~~~qI~~le~~l~~~~~~lee 335 (629)
T KOG0963|consen 269 NSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV---EEREKHKAQISALEKELKAKISELEE 335 (629)
T ss_pred hhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 222233334455555555555553332222 22333444455554444444444333
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.43 E-value=7.9 Score=40.93 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q psy4651 336 IKRYQQQLKDVQTALEEEQRARDDA 360 (721)
Q Consensus 336 ~~~l~~~l~~l~~~lee~~~~~~~~ 360 (721)
...++.++..-+.++.++...-..+
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444444444444444433333
No 114
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.15 E-value=14 Score=42.77 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 172 IALEKTKQRLATEVEDLQLEVDRANAIANAAEKK 205 (721)
Q Consensus 172 ~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~ 205 (721)
..|++.+..|+..+.++...+.........+-+.
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~ 114 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKA 114 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4577777777777777777776665555544443
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.08 E-value=0.57 Score=44.79 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy4651 504 AIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583 (721)
Q Consensus 504 ~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~ 583 (721)
.+..+...+..+..++....+.+..+...+..+...+..+...+......+..+...+..+...+..+...+.+....+.
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777777777666666666666665555555555555555555555555555555555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4651 584 LNLAKFRKAQQELEEAEERA 603 (721)
Q Consensus 584 ~l~~~~~~l~~~l~e~e~~~ 603 (721)
.+..++..++-++.-++..+
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333
No 116
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.05 E-value=8.2 Score=39.61 Aligned_cols=67 Identities=25% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLN 407 (721)
Q Consensus 341 ~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~ 407 (721)
.++..++.++..+......++........++...-.+-+.+...+..+.+.+-+..+++..+..+..
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333333333333333333333333333333333333333333
No 117
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.51 E-value=7.3 Score=37.27 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy4651 185 VEDLQLEVDR 194 (721)
Q Consensus 185 i~~l~~~le~ 194 (721)
+..+...++.
T Consensus 25 ~~~l~~k~~e 34 (207)
T PF05010_consen 25 EQELKKKYEE 34 (207)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 118
>KOG4593|consensus
Probab=93.25 E-value=17 Score=40.68 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=6.1
Q ss_pred hhhchHHHHHhH
Q psy4651 651 LFLLEEEFENTR 662 (721)
Q Consensus 651 l~~~~ee~e~~r 662 (721)
+..++.+.+.++
T Consensus 561 ~e~LqaE~~~lk 572 (716)
T KOG4593|consen 561 LEELQAELERLK 572 (716)
T ss_pred HHHHHHHHHHHH
Confidence 444555555554
No 119
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.96 E-value=1.6 Score=41.69 Aligned_cols=98 Identities=12% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4651 509 EQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAK 588 (721)
Q Consensus 509 ~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~ 588 (721)
...+..+..........+..+...+..++..+......+..+...+..+...+..+...+......++.+.+++..+...
T Consensus 80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ 159 (194)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444444444444444444444444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4651 589 FRKAQQELEEAEERADLA 606 (721)
Q Consensus 589 ~~~l~~~l~e~e~~~~~~ 606 (721)
+.-+...+..++.+...+
T Consensus 160 ~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554444
No 120
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.84 E-value=15 Score=38.96 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 293 LEVEKDELQAALEEAEA 309 (721)
Q Consensus 293 le~e~~~l~~~le~~~~ 309 (721)
...++..+...++++..
T Consensus 85 s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 85 TADDLKKLRKQIADLNA 101 (420)
T ss_pred HHhHHHHHHhhHHHHHH
Confidence 33333333333443333
No 121
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.80 E-value=13 Score=38.08 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4651 387 QADRGRRQAETELADAHEQLNELSAQATSISAAKRKL 423 (721)
Q Consensus 387 ~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~l 423 (721)
+.....+.|..++..|+..+.++...+..+...+...
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3444556677777777777777666666555544443
No 122
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.72 E-value=11 Score=36.97 Aligned_cols=67 Identities=24% Similarity=0.305 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Q psy4651 455 AARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGE 522 (721)
Q Consensus 455 ~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~ 522 (721)
+..|..+...+...|..+++.+.+|.-++.--..++.-++.... .....+..+++.+..+..+|+..
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~-s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN-SCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555554444333333332222222 12233444444444444444433
No 123
>KOG0962|consensus
Probab=92.62 E-value=30 Score=42.00 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=41.8
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 2 GEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIAL----------EKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 71 (721)
Q Consensus 2 ~~~~~~~~~~~~~k~l~~~~~~l~~~le~~~~~~~~~----------~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~ 71 (721)
+-|+|+++.. ++.....+......++.++.-.... ...+......+..+..++.+....+..+.....
T Consensus 184 ~KAld~~kk~--rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~ 261 (1294)
T KOG0962|consen 184 TKALDSLKKL--RKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLK 261 (1294)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4688998888 7777777777777776665444432 223333344444444444444444444444444
Q ss_pred HHHHHHH
Q psy4651 72 AIDKIIG 78 (721)
Q Consensus 72 ~le~~~~ 78 (721)
.|+..+.
T Consensus 262 el~k~~~ 268 (1294)
T KOG0962|consen 262 ELEKLLK 268 (1294)
T ss_pred HHHHHHH
Confidence 4444333
No 124
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=92.45 E-value=3.3 Score=30.81 Aligned_cols=58 Identities=17% Similarity=0.360 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 515 LENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK 572 (721)
Q Consensus 515 l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~ 572 (721)
|++.|+...+....++.++.+++...-.+...|.+....+..+...+..+..++..++
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666777777777777888888888888888888877777777766666666555443
No 125
>KOG0980|consensus
Probab=92.21 E-value=26 Score=40.28 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q psy4651 337 KRYQQQLKDVQTALEEEQRAR 357 (721)
Q Consensus 337 ~~l~~~l~~l~~~lee~~~~~ 357 (721)
..+..++..+...+.+.++..
T Consensus 361 ~q~~~ql~~le~~~~e~q~~~ 381 (980)
T KOG0980|consen 361 EQYENQLLALEGELQEQQREA 381 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 334444444444444444333
No 126
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.10 E-value=15 Score=37.12 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 370 RANALQNELEESRQLLE 386 (721)
Q Consensus 370 ~~~~l~~ele~~~~~~~ 386 (721)
.+..|..+++.+..+..
T Consensus 53 ~l~~L~~d~~~L~~k~~ 69 (264)
T PF06008_consen 53 ELESLEQDVENLQEKAT 69 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444433333
No 127
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.88 E-value=7.8 Score=33.52 Aligned_cols=17 Identities=47% Similarity=0.812 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhhH
Q psy4651 418 AAKRKLEGELQTLHSDL 434 (721)
Q Consensus 418 ~~~~~le~el~~lk~~l 434 (721)
..++.++.++..++.++
T Consensus 23 s~lr~~E~E~~~l~~el 39 (120)
T PF12325_consen 23 SQLRRLEGELASLQEEL 39 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 128
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.54 E-value=17 Score=36.68 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 155 ARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAI 198 (721)
Q Consensus 155 ~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~ 198 (721)
..+..+...+........+.......++..+..|..+++.+...
T Consensus 24 ~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k 67 (264)
T PF06008_consen 24 SSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEK 67 (264)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444455554444444433
No 129
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.20 E-value=10 Score=33.58 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy4651 478 ALETQIKELQIRLD 491 (721)
Q Consensus 478 ~Le~e~~~L~~~l~ 491 (721)
.|+.++.++..+++
T Consensus 102 ~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 102 QLEKELSELEQRIE 115 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 130
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.15 E-value=9.3 Score=33.03 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA 195 (721)
Q Consensus 152 ~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~ 195 (721)
.+...+..+..++..++..+..+...+..+..+|-.+....+..
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555556655555555555555544443
No 131
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.31 E-value=27 Score=37.00 Aligned_cols=21 Identities=0% Similarity=0.118 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4651 205 KAKAIDKIIGEWKLKVDDLAA 225 (721)
Q Consensus 205 ~~~~le~~l~e~~~~~~~~~~ 225 (721)
..+.|...+...+..+.+...
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~ 411 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRN 411 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444333
No 132
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.29 E-value=17 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4651 183 TEVEDLQLEVDRANAIAN 200 (721)
Q Consensus 183 ~ei~~l~~~le~~~~~~~ 200 (721)
++|.-|+..|.......+
T Consensus 10 GEIsLLKqQLke~q~E~~ 27 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVN 27 (202)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455555555544444333
No 133
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.93 E-value=27 Score=36.39 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 440 EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 440 ~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
-...+...+..+..+...+...+..+...+..+......|..++..|+....
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555666666666666666666666666666666666655444
No 134
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.30 E-value=45 Score=39.48 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy4651 371 ANALQNELEESRQL 384 (721)
Q Consensus 371 ~~~l~~ele~~~~~ 384 (721)
+..+..+++.++..
T Consensus 318 v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 318 VVAAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 135
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.95 E-value=18 Score=32.92 Aligned_cols=11 Identities=0% Similarity=0.525 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy4651 336 IKRYQQQLKDV 346 (721)
Q Consensus 336 ~~~l~~~l~~l 346 (721)
++.-+.++..|
T Consensus 135 ~rkke~E~~kL 145 (151)
T PF11559_consen 135 LRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 136
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.77 E-value=13 Score=31.01 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 238 STELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ 313 (721)
Q Consensus 238 e~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~ 313 (721)
...+..|...+++.......+.+.+..|...+..|. .........+.+++..++++...++.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~--------------~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQ--------------AQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333333333333 33333444444555555555444444
No 137
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.76 E-value=22 Score=33.69 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 329 NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNE 377 (721)
Q Consensus 329 ~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~e 377 (721)
+...+.+...++.+=.-|..+-+.+.+--..+...+-.+-++...|..+
T Consensus 151 r~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~ 199 (202)
T PF06818_consen 151 RQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERE 199 (202)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555566555555554444444444455555555444
No 138
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.64 E-value=47 Score=37.41 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=19.1
Q ss_pred HHhhhhhhchHHHHHhHhhHHHHHHHHH
Q psy4651 646 KLVLHLFLLEEEFENTRKNHQRALDSMQ 673 (721)
Q Consensus 646 ~~~~~l~~~~ee~e~~rk~~~~~v~~l~ 673 (721)
.+...|.+.+-.+...||-|.+.|.+|-
T Consensus 586 rl~E~L~~~E~rLNeARREHtKaVVsLR 613 (739)
T PF07111_consen 586 RLREQLSEMEKRLNEARREHTKAVVSLR 613 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777888888877653
No 139
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.58 E-value=13 Score=30.93 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436 (721)
Q Consensus 364 ~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~ 436 (721)
...++..+..|+..++..+.....+-..+.. |...+..+..........+..++..|.++...++.
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~-------L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQ-------LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544444333333 33333333333333333444444445555544444
No 140
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.48 E-value=24 Score=33.83 Aligned_cols=101 Identities=14% Similarity=0.273 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRARDD---AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~~~---~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~ 411 (721)
++..+..++..|+..+....+.... +...+..++..+..+.++.+.+...+..+...|..|...+..+-..+..-.+
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~ 142 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTG 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333332 2333444566666666666666666666665555555555554444443322
Q ss_pred hh-HHHHHHHHHHHHHHHHHHhhHH
Q psy4651 412 QA-TSISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 412 ~~-~~l~~~~~~le~el~~lk~~le 435 (721)
.. .-|+..+..+...+..-..++.
T Consensus 143 ~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 143 LKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2234444444444444444433
No 141
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.32 E-value=29 Score=34.52 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHH
Q psy4651 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367 (721)
Q Consensus 330 ~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l 367 (721)
.++...+..++.++...+..|.........+......+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~a 45 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQA 45 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444444444443333
No 142
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.12 E-value=35 Score=35.27 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 350 LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL 409 (721)
Q Consensus 350 lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~ 409 (721)
+|+....+..+..++...+........+-+..+..+......+.....++..++..+...
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kA 135 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444444444444443333
No 143
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.78 E-value=11 Score=29.21 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 163 TIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAA 225 (721)
Q Consensus 163 ~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~ 225 (721)
.++.++..+..+-..+.-|+.+++.|...-..+......+......+..+...|..++..+-+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666677777777777666666655555555555555555666655554443
No 144
>KOG0963|consensus
Probab=87.25 E-value=53 Score=36.44 Aligned_cols=45 Identities=11% Similarity=-0.043 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAV 610 (721)
Q Consensus 566 ~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~ 610 (721)
.++..++.....+...+..+......+.......+.-+..++..+
T Consensus 390 ~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl 434 (629)
T KOG0963|consen 390 NENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDL 434 (629)
T ss_pred HHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 333333333333333444444444445555544444445554444
No 145
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=87.18 E-value=31 Score=33.64 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy4651 336 IKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA------------DRGRRQAETELADAH 403 (721)
Q Consensus 336 ~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~------------~~~~~~l~~el~~l~ 403 (721)
.+.++.-+.+++..+..+......+......+++++..+....+.|......+ ...+..++..+..+.
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~ 105 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALE 105 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666667666666666665444321 123455555555555
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4651 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDEL 437 (721)
Q Consensus 404 ~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~ 437 (721)
..+.........+...+..++..|.+++.....+
T Consensus 106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555666666666665555533
No 146
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.01 E-value=38 Score=33.55 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy4651 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360 (721)
Q Consensus 323 ~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~ 360 (721)
.+|+......+..+..|+.++..+.+++.....+...+
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666777776666666666655554
No 147
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.97 E-value=27 Score=31.86 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 175 EKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKV 220 (721)
Q Consensus 175 e~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~ 220 (721)
......+..++.++...+...-.....++...+.....|.+....+
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333444444444444444444444444444444444444444444
No 148
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.78 E-value=43 Score=33.96 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q psy4651 416 ISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 416 l~~~~~~le~el~~lk~~le 435 (721)
+...+..+-.+|..++..+.
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~ 246 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLA 246 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.48 E-value=86 Score=37.13 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRARDDAR 361 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~~~~~ 361 (721)
....+..++..++.+++.+........
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666655555555444443
No 150
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.46 E-value=45 Score=33.85 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4651 367 VERRANALQNELEESR 382 (721)
Q Consensus 367 l~~~~~~l~~ele~~~ 382 (721)
|-+++..+..+.+.+-
T Consensus 82 LlKkl~~l~keKe~L~ 97 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLA 97 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 151
>KOG1853|consensus
Probab=85.23 E-value=37 Score=32.78 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4651 476 RKALETQIKELQIRLD 491 (721)
Q Consensus 476 k~~Le~e~~~L~~~l~ 491 (721)
..+|..+..||...|.
T Consensus 166 vqRLkdEardlrqela 181 (333)
T KOG1853|consen 166 VQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666665555
No 152
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.18 E-value=68 Score=35.74 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhH
Q psy4651 419 AKRKLEGELQTLHSDL 434 (721)
Q Consensus 419 ~~~~le~el~~lk~~l 434 (721)
++..++.++..+...+
T Consensus 255 ~l~~l~~~l~~l~~~y 270 (498)
T TIGR03007 255 RIEALEKQLDALRLRY 270 (498)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444433
No 153
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.67 E-value=59 Score=34.60 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 287 EKARKRLEVEKDELQAALEEAEA 309 (721)
Q Consensus 287 ~~~~~~le~e~~~l~~~le~~~~ 309 (721)
...+.+|..+++.+..+.+.+..
T Consensus 374 n~Ere~L~reL~~i~~~~~~L~k 396 (622)
T COG5185 374 NQEREKLTRELDKINIQSDKLTK 396 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHH
Confidence 33445555555555555555544
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.17 E-value=60 Score=34.23 Aligned_cols=93 Identities=14% Similarity=0.259 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4651 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF 589 (721)
Q Consensus 510 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~ 589 (721)
.+-.-+..+++....+.+.....+..++..++.....+......+..+.++++.....+......+.+- +.+
T Consensus 259 sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~--------sPl 330 (359)
T PF10498_consen 259 SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG--------SPL 330 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--------CHH
Confidence 333444455555555555555555555555555555555555444444444444444433333333222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4651 590 RKAQQELEEAEERADLAEQAV 610 (721)
Q Consensus 590 ~~l~~~l~e~e~~~~~~e~~~ 610 (721)
..+...+..++.++..+..++
T Consensus 331 v~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 331 VKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 445555555555555444444
No 155
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.79 E-value=59 Score=33.89 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 165 ESLNQKVIALEKTKQRLATEVEDLQLE 191 (721)
Q Consensus 165 e~~~~~~~~le~~~~~le~ei~~l~~~ 191 (721)
+-..-.|..|.+.+..-..-+.++..+
T Consensus 71 ely~~~c~EL~~~I~egr~~~~~~E~~ 97 (325)
T PF08317_consen 71 ELYQFSCRELKKYISEGRQIFEEIEEE 97 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 156
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.13 E-value=52 Score=32.72 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 174 LEKTKQRLATEVEDLQLEV 192 (721)
Q Consensus 174 le~~~~~le~ei~~l~~~l 192 (721)
+......++.+|+.|...+
T Consensus 43 ~~~~~~~~q~ei~~L~~qi 61 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQI 61 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 157
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.91 E-value=75 Score=34.40 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhHH
Q psy4651 334 KNIKRYQQQLKDVQTALE 351 (721)
Q Consensus 334 ~~~~~l~~~l~~l~~~le 351 (721)
.++..+..++..++..+.
T Consensus 81 ~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVA 98 (423)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344445555544444443
No 158
>KOG0249|consensus
Probab=82.52 E-value=92 Score=35.18 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 367 VERRANALQNELEES 381 (721)
Q Consensus 367 l~~~~~~l~~ele~~ 381 (721)
+...+..+..++..+
T Consensus 168 l~~~~qe~naeL~ra 182 (916)
T KOG0249|consen 168 LEEQLEELNAELQRA 182 (916)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333343333
No 159
>KOG0962|consensus
Probab=82.23 E-value=1.3e+02 Score=36.84 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4651 539 RIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGG 618 (721)
Q Consensus 539 ~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~ 618 (721)
.+..+..++.++.++...+..++.... ..........|...+..+.+....+.+.....+..+..++.++.
T Consensus 1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~---------~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD---------IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555554444444333222 22222333444445555666666666666677777766666654
No 160
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=82.19 E-value=82 Score=34.39 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4651 91 DRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQK 170 (721)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le~~~~~ 170 (721)
..+.....++......++.+...+ ...+|. ++..|+.-|. ++....-.+.. -.+...+..+...+......
T Consensus 200 ~~~ee~~~~L~~~~e~IP~L~~e~--~~~lP~----ql~~Lk~Gyr-~m~~~gY~l~~--~~id~~~~~L~~~l~~~~~~ 270 (570)
T COG4477 200 EEAEEHMIALRSIMERIPSLLAEL--QTELPG----QLQDLKAGYR-DMKEEGYHLEH--VNIDSRLERLKEQLVENSEL 270 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhchH----HHHHHHHHHH-HHHHccCCccc--ccHHHHHHHHHHHHHHHHhH
Confidence 333333333444444555444333 233333 4566555554 23332222222 23444455555554444333
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 171 -----VIALEKTKQRLATEVEDLQLEVDRANAIANAAEK 204 (721)
Q Consensus 171 -----~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~ 204 (721)
++.++.....++..|+.+=.-++..-.+....+.
T Consensus 271 l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~ 309 (570)
T COG4477 271 LTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEE 309 (570)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555554444444433
No 161
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.33 E-value=26 Score=33.14 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4651 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK 442 (721)
Q Consensus 395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~ 442 (721)
++.+++.+++++..+....+.|+...+.+..++..++.++++....++
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 445555566666666666666666666677777777777766554433
No 162
>PF13514 AAA_27: AAA domain
Probab=80.51 E-value=1.6e+02 Score=36.65 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 573 RQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVS 611 (721)
Q Consensus 573 ~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~ 611 (721)
.....+...+..+...+..+...+..+...+..|...+.
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 711 (1111)
T PF13514_consen 673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ 711 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555555554443
No 163
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=80.47 E-value=49 Score=30.65 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651 378 LEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI 416 (721)
Q Consensus 378 le~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l 416 (721)
..++...+..+...+.-|+.+|+.|+..+......+..+
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~ 97 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAV 97 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334444555555566667777777776666655444443
No 164
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.36 E-value=82 Score=33.21 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNEL 378 (721)
Q Consensus 344 ~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~el 378 (721)
.+|+..++........+....-.....+..+..++
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i 250 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDI 250 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46666666665555554444444444444444333
No 165
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.02 E-value=1.2e+02 Score=35.05 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy4651 300 LQAALEEAE 308 (721)
Q Consensus 300 l~~~le~~~ 308 (721)
+..+++.++
T Consensus 207 ~~~~~~~le 215 (650)
T TIGR03185 207 ILSEIEALE 215 (650)
T ss_pred HHHHHHHHH
Confidence 333333333
No 166
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.01 E-value=62 Score=31.54 Aligned_cols=101 Identities=23% Similarity=0.311 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy4651 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD------------RGRRQAETELADAHE 404 (721)
Q Consensus 337 ~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~------------~~~~~l~~el~~l~~ 404 (721)
..+...+.++...+..+...+..+......+++.+..+...+..|......+. ..+..++..+..+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555666666666666666655444322 223445555555555
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4651 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDEL 437 (721)
Q Consensus 405 ~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~ 437 (721)
.+.........+...+..+...+.+++.+...+
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555543
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.99 E-value=57 Score=33.73 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4651 539 RIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKG 617 (721)
Q Consensus 539 ~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~ 617 (721)
+..++...+..+..+...+..++..+..+...+...-..+-...+.+......+..+...+...+......++.|+...
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333333333333333333333333333333333334444444555555566666666666666666666654
No 168
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.88 E-value=33 Score=32.49 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4651 507 KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579 (721)
Q Consensus 507 ~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~ 579 (721)
.+.....++...++...++...+-..+..++..+.+++..+..+..+++.+......+-.+...++....++.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 4444555566666666677777777777777777777777777777777776666666655555555555444
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.86 E-value=49 Score=34.23 Aligned_cols=10 Identities=30% Similarity=0.232 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy4651 482 QIKELQIRLD 491 (721)
Q Consensus 482 e~~~L~~~l~ 491 (721)
.+.-....++
T Consensus 121 q~~~~~~~L~ 130 (314)
T PF04111_consen 121 QYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 170
>PRK10698 phage shock protein PspA; Provisional
Probab=79.74 E-value=63 Score=31.52 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy4651 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD------------RGRRQAETELADAHE 404 (721)
Q Consensus 337 ~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~------------~~~~~l~~el~~l~~ 404 (721)
+.+..-+.+++..+.++...+..+......+++.+..+...+..|.....-+. ..+......+..+..
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555556666666666666666655444221 234555666666666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4651 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK 442 (721)
Q Consensus 405 ~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~ 442 (721)
.+.........+...+..+...|.+++.+-..+.....
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665544433
No 171
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.82 E-value=83 Score=32.35 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 329 NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL-----QNELEESRQLLEQADRGRRQAETELADAH 403 (721)
Q Consensus 329 ~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l-----~~ele~~~~~~~~~~~~~~~l~~el~~l~ 403 (721)
-.+.....+.|..++..++.++.++.+.+--+........-..... -.+-+.+-.+++.+......|+.++..+.
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445667777777777777777766555554433321111100 02222333333333344444555555555
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy4651 404 EQLNELSAQATSISAAKRKLEGELQT 429 (721)
Q Consensus 404 ~~l~~~~~~~~~l~~~~~~le~el~~ 429 (721)
+..+++...+.........+..++..
T Consensus 154 DEkeEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 154 DEKEELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555454444444445444433
No 172
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.07 E-value=39 Score=34.51 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=10.7
Q ss_pred HhHhhHHHHHHHHHHhHHH
Q psy4651 660 NTRKNHQRALDSMQASLEA 678 (721)
Q Consensus 660 ~~rk~~~~~v~~l~~~le~ 678 (721)
..+..+.-.|..+...|+.
T Consensus 226 ~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 226 DEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666654
No 173
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.97 E-value=73 Score=31.21 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651 512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578 (721)
Q Consensus 512 ~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~ 578 (721)
+.++..+.+.+..+...+...++.+...+..+..-+.....+.....+.+..+..++.-++..++.+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555554444444444444444444444443
No 174
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.83 E-value=39 Score=27.99 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=38.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 345 DVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS 415 (721)
Q Consensus 345 ~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ 415 (721)
.+...+++..............++..+..+..++......+-.+.+.+..+..++..|...+......+..
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~ 77 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQ 77 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33334444444444444444455556666666666666666666666666666666666555544433333
No 175
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.86 E-value=1.5e+02 Score=34.32 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4651 472 QEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 472 le~~k~~Le~e~~~L~~~l~ 491 (721)
+-.....++.++..+...+.
T Consensus 396 ~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444445554444444
No 176
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.58 E-value=1.3e+02 Score=33.47 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=8.3
Q ss_pred HhHhHHHHHHHHHHHHh
Q psy4651 261 ENKNLADEVKDLLDQIG 277 (721)
Q Consensus 261 ~~~~l~~e~~~l~~~l~ 277 (721)
....+..++..+...+.
T Consensus 276 ~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 276 DVIATKREIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555443
No 177
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=75.66 E-value=82 Score=30.66 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADR------------GRRQAETELADA 402 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~------------~~~~l~~el~~l 402 (721)
+.+.+..-+.++...+..+...+..+......+++.+..+...+..|......+.. .+......+..+
T Consensus 25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l 104 (219)
T TIGR02977 25 PEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEAL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666666666666666666677776666666655443221 223333444444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy4651 403 HEQLNELSAQATSISAAKRKLEGELQTLHSD 433 (721)
Q Consensus 403 ~~~l~~~~~~~~~l~~~~~~le~el~~lk~~ 433 (721)
...+......+..+...+..++..+..++.+
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444333
No 178
>KOG0804|consensus
Probab=73.08 E-value=1.4e+02 Score=31.97 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 290 RKRLEVEKDELQAALEEAE 308 (721)
Q Consensus 290 ~~~le~e~~~l~~~le~~~ 308 (721)
....+..+..|+.++-++-
T Consensus 430 ~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHhHh
Confidence 3334444444555554443
No 179
>PF15294 Leu_zip: Leucine zipper
Probab=72.78 E-value=1.1e+02 Score=30.75 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=31.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy4651 230 SQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLD 274 (721)
Q Consensus 230 ~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~ 274 (721)
+..++..+..+..+++..+..........-..+..+...+.++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766666666677777777777766
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.10 E-value=1e+02 Score=30.18 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4651 546 QAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 546 ~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~ 616 (721)
-|.+...++..|..+.....+.|......+..++..+..+..........+..+.+.+..+...++.+|..
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555556666666666666666666666666666666777777777777777776
No 181
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=70.29 E-value=1.2e+02 Score=30.16 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHhH
Q psy4651 663 KNHQRALDSMQASL 676 (721)
Q Consensus 663 k~~~~~v~~l~~~l 676 (721)
++++..+..|..+|
T Consensus 185 k~lq~QL~~L~~EL 198 (246)
T PF00769_consen 185 KRLQEQLKELKSEL 198 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566665555
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.88 E-value=1e+02 Score=29.68 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy4651 294 EVEKDELQ 301 (721)
Q Consensus 294 e~e~~~l~ 301 (721)
+.++..++
T Consensus 99 e~el~~l~ 106 (206)
T PRK10884 99 ENQVKTLT 106 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 183
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.54 E-value=1.1e+02 Score=29.38 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q psy4651 336 IKRYQQQLKDVQTA 349 (721)
Q Consensus 336 ~~~l~~~l~~l~~~ 349 (721)
|+.|..++.+++..
T Consensus 29 IksLKeei~emkk~ 42 (201)
T PF13851_consen 29 IKSLKEEIAEMKKK 42 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 184
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=69.21 E-value=1.3e+02 Score=30.00 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRAR 357 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~ 357 (721)
++..+...+..+...++.....+
T Consensus 6 KL~~i~e~~~~f~~~le~e~~~R 28 (247)
T PF06705_consen 6 KLASINERFSGFESDLENEKRQR 28 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665544443
No 185
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.16 E-value=1.4e+02 Score=30.57 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Q psy4651 394 QAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKA 451 (721)
Q Consensus 394 ~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l 451 (721)
.+-..|.++.+.+-......+.|...+..+--+|.-|+..+++....+..+...++..
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK 138 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREK 138 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666667777777777777777766655555444444333
No 186
>KOG0249|consensus
Probab=68.67 E-value=2.1e+02 Score=32.47 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410 (721)
Q Consensus 370 ~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~ 410 (721)
++..|..+++.++..+..+...+.++....+.|...++.+.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666555
No 187
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.29 E-value=1.5e+02 Score=30.59 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571 (721)
Q Consensus 533 ~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~ 571 (721)
+..++..+......+......+..++.++..+...+...
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333333333333333333
No 188
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.28 E-value=1.4e+02 Score=30.34 Aligned_cols=28 Identities=36% Similarity=0.416 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy4651 226 ELDASQKECRNYSTELFRLKGAYEEAQE 253 (721)
Q Consensus 226 ~~~~~~~~~~~le~e~~~l~~ele~~~~ 253 (721)
.++.+..+..+.+.+...|..++.+...
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555554443
No 189
>KOG0982|consensus
Probab=67.95 E-value=1.7e+02 Score=31.01 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 287 EKARKRLEVEKDELQAALEEAEA 309 (721)
Q Consensus 287 ~~~~~~le~e~~~l~~~le~~~~ 309 (721)
..-...++..+.-++..+.++.+
T Consensus 214 ee~r~di~~kv~flerkv~eled 236 (502)
T KOG0982|consen 214 EEERIDIERKVRFLERKVQELED 236 (502)
T ss_pred hchhhhHHHHHHHHHHHHHHhhc
Confidence 33444444444455555444443
No 190
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.06 E-value=1.6e+02 Score=32.90 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=3.6
Q ss_pred HHHHHHHhHH
Q psy4651 567 KIKTYKRQIE 576 (721)
Q Consensus 567 ~l~~~~~~le 576 (721)
.+..+...|.
T Consensus 482 ~I~~L~~~L~ 491 (652)
T COG2433 482 RIERLEKELE 491 (652)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 191
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.80 E-value=2e+02 Score=31.54 Aligned_cols=96 Identities=13% Similarity=0.209 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 263 KNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQ 342 (721)
Q Consensus 263 ~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~ 342 (721)
......|.+|..++........-+......|-..+.........+...+......+.+++-++...+..++.++..+-.+
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEH 495 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445555555555544433333444444444444444444444444455555555566666666666666666666666
Q ss_pred HHHHHHhHHHHHHHHH
Q psy4651 343 LKDVQTALEEEQRARD 358 (721)
Q Consensus 343 l~~l~~~lee~~~~~~ 358 (721)
+..|..++.....+++
T Consensus 496 LasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 496 LASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655554444333
No 192
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.51 E-value=58 Score=25.09 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy4651 514 ELENELDGE 522 (721)
Q Consensus 514 ~l~~ele~~ 522 (721)
.|+..++.+
T Consensus 9 ~Lr~rLd~~ 17 (69)
T PF14197_consen 9 TLRNRLDSL 17 (69)
T ss_pred HHHHHHHHH
Confidence 333333333
No 193
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.13 E-value=66 Score=25.24 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 165 ESLNQKVIALEKTKQRLATEVEDLQLEVDRA-------NAIANAAEKKAKAIDKIIGEWKLKVDDL 223 (721)
Q Consensus 165 e~~~~~~~~le~~~~~le~ei~~l~~~le~~-------~~~~~~~e~~~~~le~~l~e~~~~~~~~ 223 (721)
+.++..+..+-..+.=|+.+|++|+..-..+ ...+..+......+..+...|+.++..+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555554443333 2233334444444444455555444433
No 194
>KOG4360|consensus
Probab=64.97 E-value=2.1e+02 Score=31.08 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4651 585 NLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 585 l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~ 616 (721)
+.++..+++....+....++..+..++.+|..
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33455556666666666667777777767665
No 195
>KOG1853|consensus
Probab=64.60 E-value=1.4e+02 Score=28.98 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy4651 390 RGRRQAETELADAHEQLNELSAQATSISAAK 420 (721)
Q Consensus 390 ~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~ 420 (721)
+.++....-++++..+|+.....++.|+..+
T Consensus 126 rakRati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555555454444433
No 196
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=63.89 E-value=96 Score=26.72 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 455 AARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494 (721)
Q Consensus 455 ~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e 494 (721)
+...-.++..++..+..+-..+..++..+.+...-+..++
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555556666666667777777777666666554
No 197
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.73 E-value=36 Score=23.65 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy4651 237 YSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276 (721)
Q Consensus 237 le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l 276 (721)
++.+...|+..++.+......+...+..|..++..|...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666666666666666666666665544
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.35 E-value=1.2e+02 Score=27.52 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy4651 478 ALETQIKELQ 487 (721)
Q Consensus 478 ~Le~e~~~L~ 487 (721)
+-+.++..|+
T Consensus 137 kke~E~~kLk 146 (151)
T PF11559_consen 137 KKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 199
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.84 E-value=2.2e+02 Score=30.56 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy4651 213 IGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE 249 (721)
Q Consensus 213 l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele 249 (721)
...|-+.++.+..++.....++..|.+.+..|+..+.
T Consensus 325 ~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 325 SQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444444444444434444444444444444433
No 200
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.70 E-value=1.1e+02 Score=26.84 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q psy4651 420 KRKLEGELQTLHSDLDELLN 439 (721)
Q Consensus 420 ~~~le~el~~lk~~le~~~~ 439 (721)
++.|...|..+-.++++...
T Consensus 63 KkhLsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKE 82 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 34444445555555544433
No 201
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.17 E-value=74 Score=24.86 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 509 EQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKN 553 (721)
Q Consensus 509 ~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~ 553 (721)
...|..|..+-+.+...-..+...+.+|...+.++...+..+...
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 202
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.15 E-value=48 Score=34.88 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4651 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF 589 (721)
Q Consensus 510 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~ 589 (721)
..+..++..+......+......+..+...+..+..+++....+...+...+......+.....-+..+..+..++...+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~ 300 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQI 300 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555554444444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q psy4651 590 RKAQQELEEAEER 602 (721)
Q Consensus 590 ~~l~~~l~e~e~~ 602 (721)
..+...+..+-++
T Consensus 301 ~~l~~~~~~l~GD 313 (344)
T PF12777_consen 301 EELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHH
Confidence 4444444444333
No 203
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.79 E-value=3.2e+02 Score=32.09 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4651 502 KKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEI 581 (721)
Q Consensus 502 ~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~ 581 (721)
...+.+.+..+..|+.++.....-...+..++......+..+..++..+..++..+...+..|..++..-+..-.++...
T Consensus 623 ~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~k 702 (769)
T PF05911_consen 623 KNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAK 702 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 44566777788888888888777777888888888777777777777777777777777777777665555444444433
Q ss_pred HHHH
Q psy4651 582 AALN 585 (721)
Q Consensus 582 ~~~l 585 (721)
+..+
T Consensus 703 c~~L 706 (769)
T PF05911_consen 703 CREL 706 (769)
T ss_pred HHHH
Confidence 3333
No 204
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=60.88 E-value=80 Score=24.79 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4651 587 AKFRKAQQELEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 587 ~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~ 616 (721)
+....|......+......|+..+..|-..
T Consensus 46 ~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 46 HQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666666666676666555443
No 205
>KOG4593|consensus
Probab=60.18 E-value=3e+02 Score=31.29 Aligned_cols=12 Identities=17% Similarity=0.612 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy4651 510 QRVRELENELDG 521 (721)
Q Consensus 510 ~~~~~l~~ele~ 521 (721)
..+..|.+.+..
T Consensus 475 ~~~kdL~s~L~~ 486 (716)
T KOG4593|consen 475 HELKDLQSQLSS 486 (716)
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 206
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=59.92 E-value=82 Score=24.62 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy4651 417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464 (721)
Q Consensus 417 ~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~ 464 (721)
...+..-+..|+.|..+.+.....--.....++++...+..+...+..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~ 51 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKE 51 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666555554444444444444444444444433333
No 207
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.77 E-value=37 Score=28.30 Aligned_cols=40 Identities=35% Similarity=0.498 Sum_probs=28.3
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHH-hHHHHhHHHHH
Q psy4651 676 LEAEAKGKAEALRMKKKLEADINELEIAL-DHANKVRVAAI 715 (721)
Q Consensus 676 le~e~~~~~~~~~~k~~le~~i~~l~~~l-~~~~~~~~~~~ 715 (721)
+..+...+..+...+..++..+.+|+..| +.||+.-+.+.
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar 43 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANKMVADAR 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777 77777766665
No 208
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=59.12 E-value=2.8e+02 Score=30.46 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN 196 (721)
Q Consensus 150 ~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~ 196 (721)
.+++..-+..++.++..+..-....+...-.+-.++-.+...++...
T Consensus 15 ~~Ql~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~ 61 (531)
T PF15450_consen 15 WKQLEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQD 61 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666655555555555555555554444433
No 209
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=58.69 E-value=2.8e+02 Score=30.47 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q psy4651 393 RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM 452 (721)
Q Consensus 393 ~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~ 452 (721)
+..+.++..+...+.........-......+...+..|...+.........+.+.+..+.
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555555555555444333333333334444444444444444444443333333333
No 210
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=58.52 E-value=23 Score=29.55 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy4651 165 ESLNQKVIALEKTKQRLATEVEDLQLEV-DRANAIANAAE 203 (721)
Q Consensus 165 e~~~~~~~~le~~~~~le~ei~~l~~~l-e~~~~~~~~~e 203 (721)
..-...+..++..+..+..++++|...| +..+.-.....
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar 43 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEEANKMVADAR 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677888888888888888777 44443333333
No 211
>KOG1899|consensus
Probab=58.35 E-value=3.1e+02 Score=30.73 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 526 HADAQKNLRKTERRIKELSFQAEEDRKNHER 556 (721)
Q Consensus 526 ~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~ 556 (721)
.......+......+..++.++.+...+...
T Consensus 226 rlqye~klkstk~e~a~L~Eq~~eK~~e~~r 256 (861)
T KOG1899|consen 226 RLQYETKLKSTKGEMAPLREQRSEKNDEEMR 256 (861)
T ss_pred HHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence 3444444555555556666665555444433
No 212
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=57.54 E-value=3.2e+02 Score=30.62 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 557 MQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQEL 596 (721)
Q Consensus 557 l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l 596 (721)
++..+..+...+-..+..++.+......+.-.+..+...+
T Consensus 390 lE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 390 LESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 3333444444444444455555544444333333344333
No 213
>KOG1899|consensus
Probab=57.29 E-value=3.2e+02 Score=30.60 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4651 403 HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAAR 457 (721)
Q Consensus 403 ~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~ 457 (721)
.+.|...--.++.|+.++-.+-.+|..++-++.-.......-+++++..+..+..
T Consensus 159 EEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qe 213 (861)
T KOG1899|consen 159 EEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQE 213 (861)
T ss_pred HHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 3444444445577777777777888888777775554444445555544444433
No 214
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.14 E-value=57 Score=22.69 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 17 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQ 53 (721)
Q Consensus 17 l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~ 53 (721)
++..+..|+...+.+...+..+..+...+..++..+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 215
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.65 E-value=1.8e+02 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccch
Q psy4651 593 QQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLV 630 (721)
Q Consensus 593 ~~~l~e~e~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~ 630 (721)
...+..+......+......|+.....++.|+..+||.
T Consensus 111 r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~ 148 (177)
T PF13870_consen 111 REELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYD 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 33333344444444444455555555566666665564
No 216
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.06 E-value=4.1e+02 Score=31.15 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4651 244 LKGAYEEAQEQLEAVR 259 (721)
Q Consensus 244 l~~ele~~~~~~e~~~ 259 (721)
|...++.+....+.+.
T Consensus 598 LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333433333333
No 217
>PRK11281 hypothetical protein; Provisional
Probab=53.80 E-value=5.2e+02 Score=32.01 Aligned_cols=7 Identities=29% Similarity=0.776 Sum_probs=3.3
Q ss_pred CCCcccc
Q psy4651 623 GSSPLKL 629 (721)
Q Consensus 623 ~~~~~~~ 629 (721)
++.|+++
T Consensus 460 s~~pid~ 466 (1113)
T PRK11281 460 SNKPMDL 466 (1113)
T ss_pred CCCCcCH
Confidence 3444554
No 218
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.69 E-value=2.4e+02 Score=28.16 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=4.6
Q ss_pred HHHHHHhhHHH
Q psy4651 426 ELQTLHSDLDE 436 (721)
Q Consensus 426 el~~lk~~le~ 436 (721)
.+.+|+..|++
T Consensus 167 kV~WLR~~L~E 177 (269)
T PF05278_consen 167 KVDWLRSKLEE 177 (269)
T ss_pred chHHHHHHHHH
Confidence 34444444443
No 219
>KOG0972|consensus
Probab=53.37 E-value=2.5e+02 Score=28.14 Aligned_cols=125 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 142 HPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVD 221 (721)
Q Consensus 142 ~~~~le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~ 221 (721)
++..+..+++.....+......++.+.+.+. ..++.+.+.-..+++....+-.+.+.+..++.+++.+..
T Consensus 228 H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit----------~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 228 HLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT----------KALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------HHHHHhHhHHHHHHHHHHHH
Q psy4651 222 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE------AVRRENKNLADEVKDLLDQI 276 (721)
Q Consensus 222 ~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e------~~~~~~~~l~~e~~~l~~~l 276 (721)
.+..-...-...+.....++..++.+++.....+. ...+.+.+|..+...+.-++
T Consensus 298 q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 298 QASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhhe
No 220
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.57 E-value=2.5e+02 Score=27.95 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571 (721)
Q Consensus 533 ~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~ 571 (721)
...+...+..+..+++.+...+..+...+......+..+
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333333333333333333333
No 221
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=52.18 E-value=2.9e+02 Score=28.57 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 447 ~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
.+.-+..+...+...+..+..-+..+......|..++..|+...+
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~ 196 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED 196 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444444444444444444444445555555555544443
No 222
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=52.04 E-value=3.6e+02 Score=29.63 Aligned_cols=66 Identities=24% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525 (721)
Q Consensus 456 ~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~~~~ 525 (721)
..+...+..++.....++..+..+...+.||...+..+.. .++-+...+..++.++..++....+.
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~----rld~qEqtL~~rL~e~~~e~~~~~r~ 398 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSW----RLDLQEQTLNLRLSEAKNEWESDERK 398 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666677777777788888888777664432 23444556666666666666655433
No 223
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=51.65 E-value=2.4e+02 Score=27.54 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 455 AARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492 (721)
Q Consensus 455 ~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~ 492 (721)
|.++...+...+..+..+-...+.++.++..+......
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k 70 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEK 70 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443
No 224
>KOG1937|consensus
Probab=51.62 E-value=3.4e+02 Score=29.16 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy4651 511 RVRELENELD 520 (721)
Q Consensus 511 ~~~~l~~ele 520 (721)
.+.+|+.++.
T Consensus 477 evrdlE~qI~ 486 (521)
T KOG1937|consen 477 EVRDLESQIY 486 (521)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 225
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.32 E-value=1.1e+02 Score=28.42 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308 (721)
Q Consensus 243 ~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~ 308 (721)
.+..++..+..++..+....+.+..++..|...+. ...+...+..+..++..+...+..+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555555554443 23445555555555555555555444
No 226
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.42 E-value=4.3e+02 Score=30.02 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 157 LAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA 195 (721)
Q Consensus 157 l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~ 195 (721)
+......+..+...+..+......+..+++-+...++.+
T Consensus 163 ~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 163 YRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444433
No 227
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.29 E-value=2.8e+02 Score=27.84 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=30.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 145 PLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIA 199 (721)
Q Consensus 145 ~le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~ 199 (721)
++...-+.+...+..+..++......+..+...-..|...|+....+++......
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666666666666666555555555555555555444333
No 228
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.80 E-value=1.8e+02 Score=25.47 Aligned_cols=42 Identities=21% Similarity=0.473 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 194 (721)
Q Consensus 150 ~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~ 194 (721)
++.+...+..+...++++.. .+...+.+|...|+.+-..++.
T Consensus 38 rr~m~~A~~~v~kql~~vs~---~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSE---SLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHH
Confidence 44555555555555554433 3334444444555444444443
No 229
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=49.59 E-value=1.2e+02 Score=23.43 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ 546 (721)
Q Consensus 503 ~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~ 546 (721)
+....|...+..++..+.........+...+..+...+..+..+
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444444444444433333
No 230
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=49.00 E-value=2.3e+02 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651 334 KNIKRYQQQLKDVQTALEEEQRARDDARE 362 (721)
Q Consensus 334 ~~~~~l~~~l~~l~~~lee~~~~~~~~~~ 362 (721)
..+.-|+.++.-++..+..+...+..+-+
T Consensus 71 tRCslLEKQLeyMRkmv~~ae~er~~~le 99 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESAEKERNAVLE 99 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34555666666666666655555544433
No 231
>PRK10698 phage shock protein PspA; Provisional
Probab=48.96 E-value=2.7e+02 Score=27.21 Aligned_cols=34 Identities=6% Similarity=0.205 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHH
Q psy4651 339 YQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372 (721)
Q Consensus 339 l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~ 372 (721)
+...+..++..++........+...+..|...+.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333
No 232
>PF13514 AAA_27: AAA domain
Probab=48.95 E-value=6.3e+02 Score=31.54 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 592 AQQELEEAEERADLAEQAV 610 (721)
Q Consensus 592 l~~~l~e~e~~~~~~e~~~ 610 (721)
+...+..+...+..+...+
T Consensus 813 ~~~~~~~~~~~l~~~~~~l 831 (1111)
T PF13514_consen 813 LEEELEQAEEELEELEAEL 831 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 233
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=48.57 E-value=74 Score=25.85 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 468 HAQTQEKLRKALETQIKELQIRL 490 (721)
Q Consensus 468 ~~~~le~~k~~Le~e~~~L~~~l 490 (721)
.++.++.+...|+..+.+|..++
T Consensus 62 EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 62 EIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554443
No 234
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.84 E-value=1.2e+02 Score=22.99 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4651 535 KTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579 (721)
Q Consensus 535 ~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~ 579 (721)
.+...+..+-.....+..++..+......+..+...+....+.+.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554444444444443333
No 235
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.10 E-value=2.9e+02 Score=27.20 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 452 MVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493 (721)
Q Consensus 452 ~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~ 493 (721)
...+..+...+....+.+..+......+...+.+...++..+
T Consensus 91 ~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei 132 (240)
T PF12795_consen 91 QAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEI 132 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444433
No 236
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.08 E-value=1.7e+02 Score=24.74 Aligned_cols=49 Identities=27% Similarity=0.357 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 362 EQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410 (721)
Q Consensus 362 ~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~ 410 (721)
..+..++..+..+..++..++..+..+......|.-+...|+..+....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555666665555555555666666666666665543
No 237
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.67 E-value=1.3e+02 Score=22.78 Aligned_cols=11 Identities=9% Similarity=0.429 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy4651 210 DKIIGEWKLKV 220 (721)
Q Consensus 210 e~~l~e~~~~~ 220 (721)
..+...|+.++
T Consensus 59 k~e~~~WQerl 69 (79)
T COG3074 59 KEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 238
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.67 E-value=3.2e+02 Score=27.27 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy4651 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIA 582 (721)
Q Consensus 503 ~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~ 582 (721)
..|.++...+..++..|-+..--+.+++-.++....+|+.|+. -+...+..|.+.++-+
T Consensus 89 tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQ---------------------vieTmrssL~ekDkGi 147 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQ---------------------VIETMRSSLAEKDKGI 147 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhhchhhhhH
Confidence 3456666667777777765544444444333333333333333 3333444555555556
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 583 ALNLAKFRKAQQELEEAEE 601 (721)
Q Consensus 583 ~~l~~~~~~l~~~l~e~e~ 601 (721)
..+...+.--...++.+-.
T Consensus 148 QKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 148 QKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHhhhhhhHhHHHHHHH
Confidence 5555555544444444433
No 239
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.30 E-value=2.3e+02 Score=28.19 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562 (721)
Q Consensus 512 ~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~ 562 (721)
+--+..+.|.......+++.++......+..++..++.++..+..|.+.+.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777778777877777777777777777777766665443
No 240
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.26 E-value=1.3e+02 Score=22.75 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 15 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKII 77 (721)
Q Consensus 15 k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~ 77 (721)
.+|+.++...-..+.-+...+.++......+..+...+....+.+......+..+....+..+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555544444444433
No 241
>PF14992 TMCO5: TMCO5 family
Probab=45.14 E-value=3.4e+02 Score=27.35 Aligned_cols=72 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 468 HAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKEL 543 (721)
Q Consensus 468 ~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el 543 (721)
..+.|+..+..+..-+.+++..++......... .-.+...+......+......+.....++.++...+...
T Consensus 71 e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e----~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v 142 (280)
T PF14992_consen 71 ETAKLEKENEHLSKSVQELQRKQDEQETNVQCE----DPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQV 142 (280)
T ss_pred hhHHHhhhhHhhhhhhhhhhhhhccccCCCCCC----ccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666667777777776543332110 112233344444555555555555555555555544443
No 242
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.96 E-value=2.5e+02 Score=30.52 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 457 RLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492 (721)
Q Consensus 457 ~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~ 492 (721)
.+...+.+.+.++..+...++.|..+++.|+.+...
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445555555666666677777777766665543
No 243
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.88 E-value=2.5e+02 Score=25.66 Aligned_cols=11 Identities=0% Similarity=0.033 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy4651 57 DRANAIANAAE 67 (721)
Q Consensus 57 ~~~~~~~~~l~ 67 (721)
++++..+..|.
T Consensus 54 eeLk~~i~~lq 64 (155)
T PF06810_consen 54 EELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 244
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.69 E-value=2.6e+02 Score=25.84 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4651 475 LRKALETQIKELQIRLDEAE 494 (721)
Q Consensus 475 ~k~~Le~e~~~L~~~l~~~e 494 (721)
....|..++..+..+|..+.
T Consensus 117 ~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 245
>KOG2264|consensus
Probab=43.65 E-value=2.9e+02 Score=30.46 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q psy4651 556 RMQDLVDKLQQKIKTYKRQIEE 577 (721)
Q Consensus 556 ~l~~~~~~l~~~l~~~~~~lee 577 (721)
.++.++..+...+..+++.+..
T Consensus 104 el~seI~~~n~kiEelk~~i~~ 125 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQ 125 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 246
>KOG0982|consensus
Probab=43.59 E-value=4.3e+02 Score=28.14 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=55.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 231 QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAA 310 (721)
Q Consensus 231 ~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~ 310 (721)
+-.+..++.+...++..+..+....+.+..........+..+..++.........+-........+....+.-++++...
T Consensus 303 qmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrke 382 (502)
T KOG0982|consen 303 QMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKE 382 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33445566666777777777777777777777777777888777777665555555555555666666666666666666
Q ss_pred HHHHH
Q psy4651 311 LEQEE 315 (721)
Q Consensus 311 l~~~e 315 (721)
+..+.
T Consensus 383 lehlr 387 (502)
T KOG0982|consen 383 LEHLR 387 (502)
T ss_pred HHHHH
Confidence 55543
No 247
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.95 E-value=1.9e+02 Score=24.55 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 449 KKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494 (721)
Q Consensus 449 ~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e 494 (721)
..+...+..+..++..++..+..+-.++..|..++..|+..+....
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666666666777777888888888888877654
No 248
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.59 E-value=3e+02 Score=25.66 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL 479 (721)
Q Consensus 427 l~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~L 479 (721)
+..++.++.........+...+......+..+...+..+...+..+...+..|
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333
No 249
>KOG0979|consensus
Probab=40.04 E-value=7.4e+02 Score=29.80 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQK 232 (721)
Q Consensus 153 l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~ 232 (721)
+......+..++..+.....++...+..|+.++.++...+............+....-..+.+....+......++.+..
T Consensus 253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555666666666666666666666655555555555555555555555566666666666666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy4651 233 ECRNYSTELFRLKGAYEEAQEQLEAV 258 (721)
Q Consensus 233 ~~~~le~e~~~l~~ele~~~~~~e~~ 258 (721)
....++..+.+.+..+.+++..+...
T Consensus 333 ~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 333 AAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 66667777777777777776655543
No 250
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.78 E-value=1.5e+02 Score=21.68 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 41 TKQRLATEVEDLQLEVDRANAIANAAEKKA 70 (721)
Q Consensus 41 ~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~ 70 (721)
.+..+...+..++.+...+...+..++...
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443333333333
No 251
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.58 E-value=3.3e+02 Score=25.62 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 152 KLQARLAEAEETIESLNQKVIALEKTK 178 (721)
Q Consensus 152 ~l~~~l~~l~~~le~~~~~~~~le~~~ 178 (721)
....-+..++..+.+....|..++...
T Consensus 13 ~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 13 RQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544
No 252
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.80 E-value=4.5e+02 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 283 IHEVEKARKRLEVEKDELQAALEEAE 308 (721)
Q Consensus 283 ~~~l~~~~~~le~e~~~l~~~le~~~ 308 (721)
...++.....++.+...++.+++++.
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444444444444444443
No 253
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=38.49 E-value=4.1e+02 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRARD 358 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~~ 358 (721)
.+..+...+..+...+......+.
T Consensus 35 r~~~i~e~i~~Le~~l~~E~k~R~ 58 (247)
T PF06705_consen 35 RFQDIKEQIQKLEKALEAEVKRRV 58 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555444444443333
No 254
>KOG1850|consensus
Probab=38.28 E-value=4.5e+02 Score=26.80 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=42.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQI 483 (721)
Q Consensus 404 ~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~ 483 (721)
+-+.........+...+.+++.+---|+.+++.....+-.+-....-... .+...+.++..|++.-..|+.+-
T Consensus 243 E~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k-------~~~~lq~kiq~LekLcRALq~er 315 (391)
T KOG1850|consen 243 ELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDK-------EYETLQKKIQRLEKLCRALQTER 315 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444455666777888888888888887654333322222222222 23444444455555545555444
Q ss_pred HHHHHHHHHH
Q psy4651 484 KELQIRLDEA 493 (721)
Q Consensus 484 ~~L~~~l~~~ 493 (721)
.++...+.++
T Consensus 316 nel~~~~~~~ 325 (391)
T KOG1850|consen 316 NELNKKLEDL 325 (391)
T ss_pred ccHHHHHHHH
Confidence 4444444443
No 255
>KOG4603|consensus
Probab=37.57 E-value=3.3e+02 Score=24.99 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 30 SLNQKVIALEKTKQRLATEVEDLQLEV--DRANAIANAAEKKAKAIDKIIGE 79 (721)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~e~~~l~~~l--~~~~~~~~~l~~~~~~le~~~~~ 79 (721)
.+..+...+.+..+..+.++..|...+ .+++..+..|.+..+.+...+..
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443 44555555555555555555443
No 256
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.98 E-value=2.7e+02 Score=23.77 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 363 QLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL 409 (721)
Q Consensus 363 ~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~ 409 (721)
.+..++..+..+..++..++..+..+......|.-+.+.|+..+...
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555555555555666666666655543
No 257
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.43 E-value=2.7e+02 Score=23.70 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy4651 513 RELENEL 519 (721)
Q Consensus 513 ~~l~~el 519 (721)
..+-..+
T Consensus 60 ~~ll~~l 66 (127)
T smart00502 60 KQLLEDL 66 (127)
T ss_pred HHHHHHH
Confidence 3333333
No 258
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=36.35 E-value=3.1e+02 Score=24.33 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 157 LAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVD 221 (721)
Q Consensus 157 l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~ 221 (721)
+.=|+.+....+.....|+-++.+|+..|..|+.+..........+.+.++-|+..+..-+.++.
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666777778888888888888888888888887777777777777766666665555443
No 259
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.78 E-value=7.8e+02 Score=28.87 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQL 190 (721)
Q Consensus 150 ~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~ 190 (721)
+..++..+.-+....+..-..+..+...+..+....+.|..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333333333333333333333333
No 260
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.54 E-value=2.7e+02 Score=23.73 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 450 KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493 (721)
Q Consensus 450 ~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~ 493 (721)
.+...+..+..++..++..+..+-.++..|..++..|+..+...
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555556666666666667777888888887777754
No 261
>KOG2010|consensus
Probab=34.93 E-value=4.7e+02 Score=26.73 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDK 563 (721)
Q Consensus 505 ~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~ 563 (721)
+..+...+.++...|....+++.+..+++..++..+.-|..+..+++..+.+-...+..
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667788888888888899999999998888888888888777655554443
No 262
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.42 E-value=2.5e+02 Score=22.67 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 11 LKTKRKLQARLAEAEETIESLNQKVIA---LEKTKQRLATEVEDLQLEVDRANAIANAAEKKA 70 (721)
Q Consensus 11 ~~~~k~l~~~~~~l~~~le~~~~~~~~---~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~ 70 (721)
.++|+.++.++......++......-. -......++.++..+...+.........|.+++
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 355667777777777777766655443 122555566666666666666666555555543
No 263
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=34.16 E-value=2.4e+02 Score=22.88 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy4651 392 RRQAETELADAHEQLNELSAQATSISAA 419 (721)
Q Consensus 392 ~~~l~~el~~l~~~l~~~~~~~~~l~~~ 419 (721)
+..|+.++..|+.+|.+...-...|+..
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~a 37 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKA 37 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444433
No 264
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=33.62 E-value=7e+02 Score=27.62 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy4651 511 RVRELENELDGE 522 (721)
Q Consensus 511 ~~~~l~~ele~~ 522 (721)
++.+|...+...
T Consensus 421 RI~eLt~qlQ~a 432 (518)
T PF10212_consen 421 RIEELTSQLQHA 432 (518)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 265
>PRK04325 hypothetical protein; Provisional
Probab=33.56 E-value=2.3e+02 Score=22.11 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 14 KRKLQARLAEAEETIESLNQKVIALEKT 41 (721)
Q Consensus 14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~ 41 (721)
+..|+.++......++.++..+..-.+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~ 38 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQT 38 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 266
>KOG2264|consensus
Probab=33.34 E-value=3.8e+02 Score=29.58 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4651 212 IIGEWKLKVDDLAAEL 227 (721)
Q Consensus 212 ~l~e~~~~~~~~~~~~ 227 (721)
++.+++.++++++..+
T Consensus 108 eI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 108 EIEEINTKIEELKRLI 123 (907)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 267
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=3.3e+02 Score=23.51 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4651 531 KNLRKTERRIKELSFQAEED 550 (721)
Q Consensus 531 ~~~~~l~~~l~el~~~l~~~ 550 (721)
.....++..+.++...++++
T Consensus 27 ~qk~~le~qL~E~~~al~El 46 (119)
T COG1382 27 LQKQQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 268
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.87 E-value=2.5e+02 Score=22.00 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 477 KALETQIKELQIRLDEA 493 (721)
Q Consensus 477 ~~Le~e~~~L~~~l~~~ 493 (721)
..|..++-+|..++--+
T Consensus 10 ~~L~KENF~LKLrI~fL 26 (75)
T PF07989_consen 10 DKLKKENFNLKLRIYFL 26 (75)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 34444455554444433
No 269
>KOG4809|consensus
Probab=31.42 E-value=7.6e+02 Score=27.37 Aligned_cols=278 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy4651 194 RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLL 273 (721)
Q Consensus 194 ~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~ 273 (721)
.....+....+..+.|...+..++..+.+....+-.+......|-+-+.++.+.|.++...++.-...+.++..++....
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651 274 DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353 (721)
Q Consensus 274 ~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~ 353 (721)
.-.++..-.- .....+..++.+... +.+..+.......+...+-.++...+.+-.+.+..++..+.+-...+...
T Consensus 408 ~~~ddar~~p-e~~d~i~~le~e~~~----y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNl 482 (654)
T KOG4809|consen 408 NIEDDARMNP-EFADQIKQLEKEASY----YRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANL 482 (654)
T ss_pred HhhHhhhcCh-hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy4651 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433 (721)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~ 433 (721)
.+....-......+-.++..-..........+. +..+--.+...................-+++-...
T Consensus 483 kHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq------------~eel~~alektkQel~~tkarl~stqqslaEke~H 550 (654)
T KOG4809|consen 483 KHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQ------------IEELMNALEKTKQELDATKARLASTQQSLAEKEAH 550 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH------------HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQI 488 (721)
Q Consensus 434 le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~ 488 (721)
|..........-..+-......+.....-.....-.-.....+.++..++.-+..
T Consensus 551 L~nLr~errk~Lee~lemK~~a~k~~i~~d~~~~~~~~~~~~~~k~~~ev~~~~~ 605 (654)
T KOG4809|consen 551 LANLRIERRKQLEEILEMKKPAWKPGIHADMWRETHKPSNETVTKGSTEVTLAEC 605 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCHHHHHHHhhhhhhHHHhhHHHHHHHHH
No 270
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.93 E-value=5.6e+02 Score=25.69 Aligned_cols=12 Identities=50% Similarity=0.689 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q psy4651 480 ETQIKELQIRLD 491 (721)
Q Consensus 480 e~e~~~L~~~l~ 491 (721)
+.+|.+|+.+|.
T Consensus 88 etEI~eLksQL~ 99 (305)
T PF15290_consen 88 ETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 271
>KOG0288|consensus
Probab=30.79 E-value=6.8e+02 Score=26.66 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy4651 479 LETQIKELQIRLD 491 (721)
Q Consensus 479 Le~e~~~L~~~l~ 491 (721)
+...+.++...+.
T Consensus 11 ~dqr~~~~~~~la 23 (459)
T KOG0288|consen 11 NDQRLIDLNTELA 23 (459)
T ss_pred hhhHHHHHHHHHH
Confidence 3334444444443
No 272
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.49 E-value=3.4e+02 Score=23.00 Aligned_cols=6 Identities=50% Similarity=0.816 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy4651 479 LETQIK 484 (721)
Q Consensus 479 Le~e~~ 484 (721)
|+..+.
T Consensus 29 le~~~~ 34 (110)
T TIGR02338 29 VEAQLK 34 (110)
T ss_pred HHHHHH
Confidence 333333
No 273
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.43 E-value=2.8e+02 Score=22.04 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4651 173 ALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEE 250 (721)
Q Consensus 173 ~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~ 250 (721)
.+..-...+..+++.+..++..........+.++..--.++..++..+-++......+.... +.+|..|+.+|+.
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
No 274
>PLN02939 transferase, transferring glycosyl groups
Probab=30.39 E-value=1.1e+03 Score=28.77 Aligned_cols=267 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ 347 (721)
Q Consensus 268 e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 347 (721)
++.+|...+....+++--|...+-..-.++...-.+-+.+...++.+++++......+- ...+-.-...-++.++..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 207 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIK-LAAQEKIHVEILEEQLEKLR 207 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh-hhhhccccchhhHHHHHHHh
Q ss_pred HhHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4651 348 TALE----EEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKL 423 (721)
Q Consensus 348 ~~le----e~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~l 423 (721)
..+- .......-+...+..+..+...|...+.-++..+ .++.+..+.+-.+...++.+...++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (977)
T PLN02939 208 NELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAEL-----------IEVAETEERVFKLEKERSLLDASLREL 276 (977)
T ss_pred hhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcch
Q psy4651 424 EGELQTLHSDLD-ELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK 502 (721)
Q Consensus 424 e~el~~lk~~le-~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~ 502 (721)
+..+...+..+- --.-..+.+-+.+..++.-+..+..+.+..-.... .+..|...++.|...|. +....+-..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~ 350 (977)
T PLN02939 277 ESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLD----QNQDLRDKVDKLEASLK--EANVSKFSS 350 (977)
T ss_pred HHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHH--HhhHhhhhH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHE 555 (721)
Q Consensus 503 ~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~ 555 (721)
..+..+.+++.-+...+.... .++...+.-....+.+++..+..+..+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 351 YKVELLQQKLKLLEERLQASD---HEIHSYIQLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 275
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.37 E-value=3.6e+02 Score=23.35 Aligned_cols=14 Identities=7% Similarity=0.415 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy4651 475 LRKALETQIKELQI 488 (721)
Q Consensus 475 ~k~~Le~e~~~L~~ 488 (721)
.+..++..+.+...
T Consensus 29 q~~~le~q~~e~~~ 42 (121)
T PRK09343 29 QKSQIDLELREINK 42 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 276
>KOG4603|consensus
Probab=29.84 E-value=4.4e+02 Score=24.18 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 242 FRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAA 310 (721)
Q Consensus 242 ~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~ 310 (721)
..|.-.+..+......+......+..+|..|...|. ...++.....|..++..+...+......
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444445555556666677777777777664 4567777777777777777777666543
No 277
>KOG2991|consensus
Probab=29.83 E-value=5.5e+02 Score=25.27 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=21.4
Q ss_pred HhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 261 ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308 (721)
Q Consensus 261 ~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~ 308 (721)
.+..|...-..|..++.+..+.-..+-.....-+.+..++..++..+.
T Consensus 109 ~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK 156 (330)
T KOG2991|consen 109 DITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLK 156 (330)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555544444333344444444444444444444443
No 278
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.82 E-value=8.6e+02 Score=27.55 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy4651 462 LRAEQDHAQTQ 472 (721)
Q Consensus 462 l~~~~~~~~~l 472 (721)
+..+..++..+
T Consensus 303 L~ele~RL~~l 313 (563)
T TIGR00634 303 LNEIEERLAQI 313 (563)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 279
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.23 E-value=7.1e+02 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 584 LNLAKFRKAQQELEEAEERADLAEQAVSKI 613 (721)
Q Consensus 584 ~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l 613 (721)
.+...+..+...+.++...+..++.++..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 142 RLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555555554433
No 280
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.22 E-value=4.3e+02 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 172 IALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209 (721)
Q Consensus 172 ~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~l 209 (721)
-.|...+..++.+|..|+..++........+.+..+.+
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444443333
No 281
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.77 E-value=7.8e+02 Score=26.72 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 336 IKRYQQQLKDVQTALEEEQRARDDAR 361 (721)
Q Consensus 336 ~~~l~~~l~~l~~~lee~~~~~~~~~ 361 (721)
...++.++..++.++..+........
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444433
No 282
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=28.47 E-value=4.8e+02 Score=25.11 Aligned_cols=45 Identities=31% Similarity=0.541 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHH
Q psy4651 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367 (721)
Q Consensus 323 ~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l 367 (721)
++|...+..+...+++.+.++.+|..=+.-+.++++++..++..+
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~L 59 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKL 59 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777788888777777777777777766655433
No 283
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.51 E-value=2.1e+02 Score=30.44 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Q psy4651 241 LFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIG 277 (721)
Q Consensus 241 ~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~ 277 (721)
++.+...++.+..........+..+...+.++.....
T Consensus 153 is~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 153 ISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444444444555556666666665544
No 284
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.18 E-value=1e+03 Score=27.67 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 454 DAARLADELRAEQDHAQTQEKLRKALETQI 483 (721)
Q Consensus 454 e~~~l~~~l~~~~~~~~~le~~k~~Le~e~ 483 (721)
++.+.-..+...+.+++..++++.-|.-.+
T Consensus 502 ev~eal~~~k~~q~kLe~sekEN~iL~itl 531 (861)
T PF15254_consen 502 EVEEALVNVKSLQFKLEASEKENQILGITL 531 (861)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHhhhHH
Confidence 333344444444444555555544444333
No 285
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.03 E-value=7.5e+02 Score=25.93 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q psy4651 373 ALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM 452 (721)
Q Consensus 373 ~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~ 452 (721)
.+...++.+...+............++..+...+..+.............++.++.....+++....-+..+.....++.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 33444444444444444444444444555555555554444444455555555666666666655555555555555555
Q ss_pred HHHHHHHHHHHHH
Q psy4651 453 VDAARLADELRAE 465 (721)
Q Consensus 453 ~e~~~l~~~l~~~ 465 (721)
..+..+...+..+
T Consensus 298 ~~~~~l~~~~~~l 310 (344)
T PF12777_consen 298 EQIEELEEQLKNL 310 (344)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 5555554444433
No 286
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.99 E-value=3.8e+02 Score=22.46 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy4651 425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463 (721)
Q Consensus 425 ~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~ 463 (721)
.+..-|+.-+-+.......+.+.++.....+..+..+++
T Consensus 12 aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~d 50 (102)
T PF10205_consen 12 AQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQEND 50 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444433333333333333
No 287
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=26.68 E-value=6.3e+02 Score=24.94 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 561 VDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERA 603 (721)
Q Consensus 561 ~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~ 603 (721)
...+...+...+..+..++..+......+...-..|+...+.+
T Consensus 179 K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 179 KAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555444444444444444444444443
No 288
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.60 E-value=1.1e+03 Score=27.59 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 451 AMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489 (721)
Q Consensus 451 l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~ 489 (721)
++.++.+....++.++.+.++|-+....+..+...+...
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKM 477 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555554444444444444444333
No 289
>KOG0999|consensus
Probab=25.16 E-value=9.7e+02 Score=26.59 Aligned_cols=544 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy4651 152 KLQARLAEAEETIESLNQKVI--------------ALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI-------- 209 (721)
Q Consensus 152 ~l~~~l~~l~~~le~~~~~~~--------------~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~l-------- 209 (721)
.+..++..+..++++...... .|+..+..++.+++.+..+++.............+..
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHH
Q psy4651 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKA 289 (721)
Q Consensus 210 e~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~ 289 (721)
+.-+.+--.+-......+-.++.++..+..++...+.+.+.+...+..+......+..+.-.|...|.+..-.-..+-..
T Consensus 92 esLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rllse 171 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSE 171 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhH
Q psy4651 290 RKRLEVEKDELQAALEEAEA---ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366 (721)
Q Consensus 290 ~~~le~e~~~l~~~le~~~~---~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~ 366 (721)
+..|+.+.-.++.++..+.. ..+.+.-...|++-+..-....++..+.--.---..|...|+-++.+++.-....+.
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkE 251 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKE 251 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred H----------------------------------------------------------------HHHHHHHHHHHHHHH
Q psy4651 367 V----------------------------------------------------------------ERRANALQNELEESR 382 (721)
Q Consensus 367 l----------------------------------------------------------------~~~~~~l~~ele~~~ 382 (721)
| ..++..|..++....
T Consensus 252 L~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smE 331 (772)
T KOG0999|consen 252 LSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSME 331 (772)
T ss_pred HHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-------------HHHHHHHHHhHHHHHH
Q psy4651 383 QLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD-------------LDELLNEAKNSEEKAK 449 (721)
Q Consensus 383 ~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~-------------le~~~~~~~~~e~~~~ 449 (721)
.....+..........++..+..+.+....+..+...+..+-.--.....+ ++-......-......
T Consensus 332 rek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~kad~~e~~l~a~e~~a~k~~ 411 (772)
T KOG0999|consen 332 REKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKADLYEVDLNALEILACKYA 411 (772)
T ss_pred HHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccchhHHhhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 450 KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADA 529 (721)
Q Consensus 450 ~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~ 529 (721)
-...++-.+..++..+... ..-...+..++.++..+...+.-++..........+.....-...-..-+..+...+.-+
T Consensus 412 ~a~~e~i~lk~ql~~l~~~-~n~tde~~~~e~evq~l~~kl~llekasla~l~~evq~~t~ia~~~~~tl~~A~~~lv~~ 490 (772)
T KOG0999|consen 412 VAVDEMIQLKDQLKALYHQ-LNYTDEKVQYEKEVQELVEKLRLLEKASLAELEKEVQKATEIAEEGTETLVNAQDELVTF 490 (772)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcccchhhhHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHhcccccchhhhHhHhhh
Q ss_pred HHHHHHHHHHHHHHH--------------------------------------------------HHHHHHHHHHHHHHH
Q psy4651 530 QKNLRKTERRIKELS--------------------------------------------------FQAEEDRKNHERMQD 559 (721)
Q Consensus 530 ~~~~~~l~~~l~el~--------------------------------------------------~~l~~~~~~~~~l~~ 559 (721)
...+..+-.-+-.+. ..+...-..+...-.
T Consensus 491 SdeLaqlyh~vc~~n~etp~rvmlD~~~e~~~~~ds~~~~~s~~~s~v~~~~pe~~~~~~g~~ds~~i~~~~~~i~~qik 570 (772)
T KOG0999|consen 491 SDELAQLYHHVCECNNETPNRVMLDYYRETDLRNDSPTGIQSPFKSPVFIAKPEIVEDLQGTADSMNIYNLIAIISDQIK 570 (772)
T ss_pred hHHHHHHHHHHHHHcCCCCchhhhhhhccccccCCCcccccCcccCchhhcCcccccccccccchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccchhhhhhhhhH
Q psy4651 560 LVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQI 639 (721)
Q Consensus 560 ~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (721)
-+...-.....+.++.-....-...+......+...+-.+..-+..-..++..||.- ...+
T Consensus 571 ~lq~av~~~~~~~~q~~~s~e~~~~~dk~~e~l~~~ilklksllstkreqi~tlrtv-------------------lkan 631 (772)
T KOG0999|consen 571 HLQKAVDHTKELSRQRIASQELGPAADKDKEALMEQILKLKSLLSTKREQITTLRTV-------------------LKAN 631 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHh
Q ss_pred HHHHHHHHhhhhhhchHHHHHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhhcc
Q psy4651 640 TVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVAAISRKK 719 (721)
Q Consensus 640 ~~~~~~~~~~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~~l~~~~~~~~~~~~~~~ 719 (721)
+.. ..-.+..+....++-+.=+.-..+.|-.+|-.-..--+.....+-.+-.--.++-.+++..+++..-|.-.+|
T Consensus 632 kqt----aevaltnlksKYEnEK~mvtetm~KlRnELk~Lkedaatfsslramf~~R~ee~~tq~de~~~ql~aaedekK 707 (772)
T KOG0999|consen 632 KQT----AEVALTNLKSKYENEKAMVTETMDKLRNELKALKEDAATFSSLRAMFAARCEEYVTQLDELQRQLAAAEDEKK 707 (772)
T ss_pred HHH----HHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhHHH
No 290
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.81 E-value=8.7e+02 Score=27.21 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 473 EKLRKALETQIKELQIRLD 491 (721)
Q Consensus 473 e~~k~~Le~e~~~L~~~l~ 491 (721)
+.....+..++..++.++.
T Consensus 151 ~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444
No 291
>PRK02119 hypothetical protein; Provisional
Probab=24.24 E-value=3.5e+02 Score=21.09 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4651 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579 (721)
Q Consensus 525 ~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~ 579 (721)
....+...+..|+..+.-...-++++...+...+..+..+...+..+..++.+..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 292
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.09 E-value=1.4e+02 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q psy4651 262 NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK 297 (721)
Q Consensus 262 ~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~ 297 (721)
...+..++..|..++..+...+..+......+...+
T Consensus 34 ~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 34 LERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 334444445555555544444444444444433333
No 293
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.94 E-value=8e+02 Score=25.18 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 292 RLEVEKDELQAALEE 306 (721)
Q Consensus 292 ~le~e~~~l~~~le~ 306 (721)
++...+...+..+++
T Consensus 78 k~~~si~~q~~~i~~ 92 (301)
T PF06120_consen 78 KAEESIAAQKRAIED 92 (301)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 294
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=23.80 E-value=3.5e+02 Score=20.95 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHH
Q psy4651 334 KNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372 (721)
Q Consensus 334 ~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~ 372 (721)
++....+....+|+..++........+...+..|...+.
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555544444444444444433333333
No 295
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=23.61 E-value=4.1e+02 Score=21.65 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKL 475 (721)
Q Consensus 443 ~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~ 475 (721)
.++..+..+......|-.+|.....++..|+..
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~ 68 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEA 68 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Confidence 333344444444444555555554544444433
No 296
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=23.52 E-value=6.2e+02 Score=23.78 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy4651 376 NELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440 (721)
Q Consensus 376 ~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~ 440 (721)
..++.+-..+++.......|..-+.-|+++++........|...+.++..+...+..++..-...
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~ 124 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAE 124 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666777777788888888888888888888888877777777777644333
No 297
>KOG4360|consensus
Probab=23.44 E-value=1e+03 Score=26.21 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4651 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL 437 (721)
Q Consensus 397 ~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~ 437 (721)
.++.....++......+..|...+-.++..+..+..+.++.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333333333333334444434444333333333333
No 298
>PHA03011 hypothetical protein; Provisional
Probab=23.24 E-value=4.3e+02 Score=21.76 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 19 ARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKII 77 (721)
Q Consensus 19 ~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~ 77 (721)
+.+..+.+.++.+...+..+..+..-+..+++.+..-+.+-.+.+.-|..+...+...+
T Consensus 57 GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 57 GDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 45667777778888888887777777777777777666666666655655555554443
No 299
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.24 E-value=6.5e+02 Score=23.90 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy4651 477 KALETQIKELQIRLDEAENN 496 (721)
Q Consensus 477 ~~Le~e~~~L~~~l~~~e~~ 496 (721)
.+|..++.+|...+..++..
T Consensus 99 vrLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666554433
No 300
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.03 E-value=3e+02 Score=29.28 Aligned_cols=44 Identities=30% Similarity=0.438 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4651 454 DAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA 497 (721)
Q Consensus 454 e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~ 497 (721)
.+..+...+..+...+..+......++..+..+...+++++..+
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333344444444444444445555555556666655544
No 301
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.93 E-value=1.5e+03 Score=28.09 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 577 EAEEIAALNLAKFRKAQQELEEAEERADLAEQAVS 611 (721)
Q Consensus 577 e~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~ 611 (721)
.+....+.+-.....++-....+......+...+.
T Consensus 394 ~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~ 428 (1109)
T PRK10929 394 SLLSGGDTLILELTKLKVANSQLEDALKEVNEATH 428 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444445555545544443
No 302
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.88 E-value=7.1e+02 Score=24.19 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 397 ~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le 435 (721)
.++..|...+.+....+-.++..+..++.+|..++.+..
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666665544
No 303
>PF13166 AAA_13: AAA domain
Probab=22.79 E-value=1.3e+03 Score=27.05 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 568 IKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAV 610 (721)
Q Consensus 568 l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~ 610 (721)
+..+...+..+...+..+...+..+...+.....-.......+
T Consensus 426 i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L 468 (712)
T PF13166_consen 426 INSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEEL 468 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333333333333333344444444333333333333333
No 304
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.74 E-value=6.5e+02 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4651 329 NAEAQKNIKRYQQQLKDVQTALEEEQR 355 (721)
Q Consensus 329 ~~~~~~~~~~l~~~l~~l~~~lee~~~ 355 (721)
+.-+++.+..-+.....|+..++-...
T Consensus 114 ka~~eR~ia~~~~ra~~LqaDl~~~~~ 140 (192)
T PF11180_consen 114 KAQLERLIAESEARANRLQADLQIARQ 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555554333
No 305
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.59 E-value=7.9e+02 Score=24.66 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 432 SDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492 (721)
Q Consensus 432 ~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~ 492 (721)
..+......++...+.+.....++..+...+...+.++..++-...+|...+..+.+.+..
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444555555566666666666666666666666666666666666553
No 306
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.25 E-value=5.5e+02 Score=22.69 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 161 EETIESLNQKVIALEKTKQRLATEVEDL 188 (721)
Q Consensus 161 ~~~le~~~~~~~~le~~~~~le~ei~~l 188 (721)
...+..+...+..+...+..+...+.++
T Consensus 12 ~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 12 AAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333333
No 307
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.08 E-value=4.8e+02 Score=21.89 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 74 (721)
Q Consensus 14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le 74 (721)
..+|.....-|+..+-+...+...+...+...+..+..+..+++.+.=....|.+....|+
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666555555555555555444444444444443
No 308
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.87 E-value=8.2e+02 Score=24.58 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLN 407 (721)
Q Consensus 357 ~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~ 407 (721)
+..+...-..|..++.....+++..+..+..+...|..--.+.+.+..+|.
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 333333344444555555555555555555555544444444444444333
No 309
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=21.69 E-value=1.6e+03 Score=27.84 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4651 20 RLAEAEETIESLNQKV 35 (721)
Q Consensus 20 ~~~~l~~~le~~~~~~ 35 (721)
........+..+...+
T Consensus 192 r~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 192 QHKSARTELEKLQAQA 207 (1047)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444333333
No 310
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.54 E-value=2.7e+02 Score=24.54 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4651 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK 442 (721)
Q Consensus 395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~ 442 (721)
+..++...+..+.........|+.+++.-+.+|..++.++++......
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555455555555555556666666666555544333
No 311
>KOG2991|consensus
Probab=21.31 E-value=8e+02 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4651 589 FRKAQQELEEAEERADLAEQAV 610 (721)
Q Consensus 589 ~~~l~~~l~e~e~~~~~~e~~~ 610 (721)
+-=|+..+.+.+.++..+..-.
T Consensus 280 iliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 280 ILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 312
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.95 E-value=5.7e+02 Score=28.00 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 37 ALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 75 (721)
Q Consensus 37 ~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~ 75 (721)
++++.+..+..++..+......++..+..++.++..|..
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444443
No 313
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.57 E-value=8.5e+02 Score=24.22 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4651 564 LQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 564 l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~ 616 (721)
+..+.+.++....+++.++......+..++.+++.++.+...+=.++..|..-
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444555555566666666666666667777777777666665666555444
No 314
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.13 E-value=5.4e+02 Score=21.75 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhH
Q psy4651 400 ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434 (721)
Q Consensus 400 ~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~l 434 (721)
..+..........+..+......+.......+..+
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I 44 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQI 44 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
Done!