Query psy4651
Match_columns 721
No_of_seqs 440 out of 2979
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 22:17:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.2 2.7E-06 9.3E-11 85.6 45.5 16 294-309 5-20 (284)
2 1c1g_A Tropomyosin; contractIl 99.2 2.2E-06 7.4E-11 86.4 44.4 9 478-486 269-277 (284)
3 1i84_S Smooth muscle myosin he 98.9 2.3E-09 8E-14 129.2 11.6 134 359-492 1029-1162(1184)
4 1i84_S Smooth muscle myosin he 98.9 3E-09 1E-13 128.2 11.1 104 335-438 1033-1136(1184)
5 3o0z_A RHO-associated protein 97.7 0.017 5.9E-07 50.9 21.9 64 372-435 44-107 (168)
6 3o0z_A RHO-associated protein 97.5 0.042 1.4E-06 48.4 22.5 72 331-402 59-130 (168)
7 2v71_A Nuclear distribution pr 97.2 0.13 4.4E-06 46.6 23.0 83 387-469 60-146 (189)
8 3na7_A HP0958; flagellar bioge 97.1 0.12 4E-06 50.6 22.9 14 179-192 35-48 (256)
9 2v71_A Nuclear distribution pr 97.1 0.16 5.6E-06 46.0 23.0 22 471-492 158-179 (189)
10 2fxo_A Myosin heavy chain, car 96.8 0.15 5E-06 43.8 18.0 103 335-437 14-123 (129)
11 2fxo_A Myosin heavy chain, car 96.5 0.31 1.1E-05 41.7 18.3 60 250-309 66-125 (129)
12 2efr_A General control protein 96.2 0.59 2E-05 40.9 23.8 94 188-281 26-119 (155)
13 3ol1_A Vimentin; structural ge 96.0 0.4 1.4E-05 40.3 15.9 83 355-437 27-109 (119)
14 3vkg_A Dynein heavy chain, cyt 95.7 3.7 0.00013 53.7 29.8 95 508-602 2012-2106(3245)
15 2eqb_B RAB guanine nucleotide 95.5 0.5 1.7E-05 37.4 13.2 17 475-491 77-93 (97)
16 2efr_A General control protein 95.4 1.3 4.3E-05 38.8 24.5 44 422-465 74-117 (155)
17 3vkg_A Dynein heavy chain, cyt 95.4 5.2 0.00018 52.5 29.3 89 346-434 2012-2100(3245)
18 2ocy_A RAB guanine nucleotide 95.3 1.4 4.7E-05 38.4 20.9 42 449-490 54-95 (154)
19 2dfs_A Myosin-5A; myosin-V, in 94.9 0.75 2.6E-05 54.4 18.6 17 150-166 923-939 (1080)
20 3swk_A Vimentin; cytoskeleton, 94.8 0.45 1.5E-05 37.3 11.3 77 355-431 7-83 (86)
21 3ol1_A Vimentin; structural ge 94.7 1.2 4.2E-05 37.4 14.6 24 329-352 85-108 (119)
22 2dfs_A Myosin-5A; myosin-V, in 94.5 1.1 3.9E-05 52.9 18.9 21 288-308 1023-1043(1080)
23 2ocy_A RAB guanine nucleotide 94.0 2.8 9.5E-05 36.5 19.3 9 346-354 63-71 (154)
24 2eqb_B RAB guanine nucleotide 93.2 2.5 8.7E-05 33.4 15.0 57 434-490 7-63 (97)
25 3tnu_B Keratin, type II cytosk 92.8 3.6 0.00012 35.1 14.3 16 336-351 84-99 (129)
26 3swk_A Vimentin; cytoskeleton, 92.4 1.9 6.4E-05 33.8 10.9 56 400-455 3-58 (86)
27 2b9c_A Striated-muscle alpha t 92.3 2.9 9.9E-05 36.4 13.1 36 395-430 85-120 (147)
28 3tnu_A Keratin, type I cytoske 92.1 3.6 0.00012 35.2 13.4 16 336-351 86-101 (131)
29 3bas_A Myosin heavy chain, str 92.0 3.2 0.00011 32.7 12.0 73 419-491 15-87 (89)
30 3u1c_A Tropomyosin alpha-1 cha 91.6 4.6 0.00016 32.6 16.2 71 513-583 12-82 (101)
31 3bas_A Myosin heavy chain, str 90.8 5 0.00017 31.6 11.9 43 335-377 15-57 (89)
32 3u59_A Tropomyosin beta chain; 90.6 5.9 0.0002 32.0 15.5 81 512-592 11-91 (101)
33 2v66_B Nuclear distribution pr 90.1 6.8 0.00023 32.0 17.1 26 336-361 37-62 (111)
34 2v4h_A NF-kappa-B essential mo 88.2 8.9 0.0003 30.9 13.0 45 447-491 63-107 (110)
35 2v66_B Nuclear distribution pr 88.2 9.5 0.00032 31.1 16.6 15 370-384 11-25 (111)
36 2e7s_A RAB guanine nucleotide 88.1 4.7 0.00016 34.1 10.3 49 170-218 33-81 (135)
37 2e7s_A RAB guanine nucleotide 87.3 1.9 6.6E-05 36.4 7.4 8 345-352 50-57 (135)
38 3q8t_A Beclin-1; autophagy, AT 85.3 13 0.00043 29.7 15.5 63 517-579 11-73 (96)
39 1wt6_A Myotonin-protein kinase 83.7 12 0.00042 28.2 10.5 60 512-571 12-71 (81)
40 2b9c_A Striated-muscle alpha t 83.3 22 0.00075 30.8 16.1 9 185-193 54-62 (147)
41 3jsv_C NF-kappa-B essential mo 80.3 19 0.00065 28.1 9.9 72 417-492 15-86 (94)
42 3q8t_A Beclin-1; autophagy, AT 80.2 21 0.0007 28.4 15.6 87 528-614 8-94 (96)
43 2jee_A YIIU; FTSZ, septum, coi 80.2 17 0.0006 27.6 11.4 32 164-195 8-39 (81)
44 3s4r_A Vimentin; alpha-helix, 79.2 22 0.00074 28.1 12.8 18 399-416 58-75 (93)
45 3s4r_A Vimentin; alpha-helix, 77.7 24 0.00083 27.8 13.2 32 456-487 12-43 (93)
46 4h22_A Leucine-rich repeat fli 76.5 27 0.00093 27.8 9.9 74 543-616 7-80 (103)
47 3iv1_A Tumor susceptibility ge 76.1 19 0.00066 27.1 8.4 57 659-715 10-66 (78)
48 3i00_A HIP-I, huntingtin-inter 74.1 30 0.001 28.8 10.1 27 330-356 36-62 (120)
49 2jee_A YIIU; FTSZ, septum, coi 72.7 29 0.00099 26.4 12.1 65 14-78 8-72 (81)
50 3ghg_A Fibrinogen alpha chain; 71.4 88 0.003 32.7 14.7 21 339-359 62-82 (562)
51 3a7p_A Autophagy protein 16; c 68.4 57 0.002 28.1 12.4 40 451-490 94-133 (152)
52 4h22_A Leucine-rich repeat fli 67.4 45 0.0016 26.5 10.4 15 49-63 32-46 (103)
53 3ni0_A Bone marrow stromal ant 66.5 44 0.0015 26.0 9.1 49 663-711 42-90 (99)
54 3mq9_A Bone marrow stromal ant 65.7 1.4E+02 0.0047 31.4 16.6 62 291-352 400-461 (471)
55 3ghg_A Fibrinogen alpha chain; 64.5 1.3E+02 0.0043 31.6 14.2 47 570-616 114-161 (562)
56 3i00_A HIP-I, huntingtin-inter 64.3 61 0.0021 26.9 11.3 17 598-614 96-112 (120)
57 2v4h_A NF-kappa-B essential mo 59.3 69 0.0023 25.8 12.5 40 371-410 64-103 (110)
58 1x8y_A Lamin A/C; structural p 58.5 61 0.0021 25.0 10.0 16 336-351 37-52 (86)
59 3mq7_A Bone marrow stromal ant 52.8 91 0.0031 25.3 14.9 15 336-350 73-87 (121)
60 4gkw_A Spindle assembly abnorm 51.4 1E+02 0.0035 25.4 22.2 17 587-603 140-156 (167)
61 3cl3_D NF-kappa-B essential mo 50.9 36 0.0012 28.1 6.1 45 338-382 6-50 (130)
62 3nmd_A CGMP dependent protein 50.8 54 0.0019 24.3 6.5 45 14-58 21-65 (72)
63 3oja_A Leucine-rich immune mol 48.8 2.6E+02 0.0089 29.3 16.1 8 265-272 454-461 (487)
64 4gkw_A Spindle assembly abnorm 47.9 1.2E+02 0.004 25.0 22.2 40 370-409 120-159 (167)
65 2w83_C C-JUN-amino-terminal ki 47.6 85 0.0029 23.4 9.8 7 395-401 35-41 (77)
66 3mov_A Lamin-B1; LMNB1, B-type 46.2 1.1E+02 0.0037 24.2 8.4 6 340-345 50-55 (95)
67 3iv1_A Tumor susceptibility ge 44.7 99 0.0034 23.3 10.1 32 150-181 13-44 (78)
68 3cl3_D NF-kappa-B essential mo 42.6 1.3E+02 0.0045 24.8 8.2 66 511-576 10-79 (130)
69 3qh9_A Liprin-beta-2; coiled-c 42.0 1.1E+02 0.0038 23.1 9.3 44 515-558 31-74 (81)
70 1l8d_A DNA double-strand break 40.3 1.4E+02 0.0049 24.0 12.2 30 163-192 11-40 (112)
71 3jsv_C NF-kappa-B essential mo 39.8 1.3E+02 0.0046 23.4 11.4 21 596-616 63-83 (94)
72 1gk4_A Vimentin; intermediate 39.2 1.3E+02 0.0044 23.1 12.5 16 336-351 35-50 (84)
73 3htk_A Structural maintenance 38.8 1E+02 0.0034 21.7 8.6 39 18-56 11-49 (60)
74 3qh9_A Liprin-beta-2; coiled-c 37.4 1.3E+02 0.0045 22.7 10.6 50 14-63 21-70 (81)
75 2lw1_A ABC transporter ATP-bin 35.8 1.5E+02 0.0052 22.9 9.1 29 8-36 18-46 (89)
76 2xnx_M M protein, M1-BC1; cell 32.3 1.6E+02 0.0055 25.0 7.4 11 393-403 83-93 (146)
77 1x8y_A Lamin A/C; structural p 30.1 1.9E+02 0.0064 22.2 10.8 22 173-194 32-53 (86)
78 3swy_A Cyclic nucleotide-gated 29.5 1.3E+02 0.0044 20.1 7.0 7 308-314 11-17 (46)
79 2no2_A HIP-I, huntingtin-inter 28.9 2.3E+02 0.0078 22.8 16.3 35 369-403 8-42 (107)
80 3oja_A Leucine-rich immune mol 28.4 5.3E+02 0.018 26.9 16.7 22 236-257 446-467 (487)
81 3s84_A Apolipoprotein A-IV; fo 28.2 4E+02 0.014 25.5 29.6 11 425-435 176-186 (273)
82 3swf_A CGMP-gated cation chann 27.0 1.9E+02 0.0067 21.4 8.1 42 304-345 9-50 (74)
83 1d7m_A Cortexillin I; coiled-c 26.9 2.1E+02 0.0073 21.8 15.6 41 395-435 51-91 (101)
84 3trt_A Vimentin; cytoskeleton, 26.7 2E+02 0.0067 21.4 11.0 11 297-307 11-21 (77)
85 1ci6_A Transcription factor AT 26.3 1.8E+02 0.0061 20.8 8.1 37 397-433 23-59 (63)
86 4etp_A Kinesin-like protein KA 25.9 1.2E+02 0.004 31.3 6.9 54 166-219 7-60 (403)
87 3m91_A Proteasome-associated A 24.6 1.7E+02 0.0059 20.0 7.2 10 545-554 16-25 (51)
88 1d7m_A Cortexillin I; coiled-c 24.3 2.4E+02 0.0082 21.5 15.8 27 370-396 5-31 (101)
89 2w83_C C-JUN-amino-terminal ki 24.1 2.2E+02 0.0077 21.1 10.2 21 541-561 33-53 (77)
90 2ke4_A CDC42-interacting prote 23.0 2.8E+02 0.0096 21.9 9.4 65 175-239 14-90 (98)
91 2zqm_A Prefoldin beta subunit 22.6 3E+02 0.01 22.1 13.4 13 476-488 29-41 (117)
92 2xdj_A Uncharacterized protein 22.5 2.6E+02 0.0089 21.3 10.5 30 173-202 24-53 (83)
93 3mov_A Lamin-B1; LMNB1, B-type 21.9 2.9E+02 0.0099 21.7 10.8 50 143-195 14-63 (95)
94 1l8d_A DNA double-strand break 20.6 3.3E+02 0.011 21.7 13.7 19 475-493 25-43 (112)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.18 E-value=2.7e-06 Score=85.64 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4651 294 EVEKDELQAALEEAEA 309 (721)
Q Consensus 294 e~e~~~l~~~le~~~~ 309 (721)
...+..++..++.+..
T Consensus 5 ~~~~~~l~~~~~~~~~ 20 (284)
T 1c1g_A 5 KKKMQMLKLDKENALD 20 (284)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH
Confidence 3334444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.17 E-value=2.2e-06 Score=86.37 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy4651 478 ALETQIKEL 486 (721)
Q Consensus 478 ~Le~e~~~L 486 (721)
.+...+..+
T Consensus 269 ~~~~~~~~~ 277 (284)
T 1c1g_A 269 AISEELDHA 277 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.93 E-value=2.3e-09 Score=129.17 Aligned_cols=134 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438 (721)
Q Consensus 359 ~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~ 438 (721)
.+......+...+..+...++.....+..+......++.++..+...+..+......+...+..++.++..+...++...
T Consensus 1029 ~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~ 1108 (1184)
T 1i84_S 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444455555566666666666655566666666666666666666666555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492 (721)
Q Consensus 439 ~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~ 492 (721)
.....+...+..+..++..+..++.........+......|..++.+|...++.
T Consensus 1109 ~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555444444444455555555555555554
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.90 E-value=3e-09 Score=128.25 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT 414 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~ 414 (721)
.+..+..++..+...++.....+..+......+...+..+..++.++...+..+......++.++..+...++.......
T Consensus 1033 ~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~ 1112 (1184)
T 1i84_S 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555545555555555566666666655555555666666666666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651 415 SISAAKRKLEGELQTLHSDLDELL 438 (721)
Q Consensus 415 ~l~~~~~~le~el~~lk~~le~~~ 438 (721)
.+...+..+..++..+..++....
T Consensus 1113 ~le~~l~~Le~eie~L~eeLee~~ 1136 (1184)
T 1i84_S 1113 NALKKIRELESHISDLQEDLESEK 1136 (1184)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555443
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.68 E-value=0.017 Score=50.85 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 372 ~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le 435 (721)
..+..-+-++...+..+...+..|+.++..|+..|+.....+......+..++..+..+..+++
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~ 107 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVK 107 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334434444444444455555555555555444444444434444444444433333
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.52 E-value=0.042 Score=48.42 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402 (721)
Q Consensus 331 ~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l 402 (721)
.+......|+.++..|++.++...+.+......+..++.++..|..+++.++..+..+...++.|...+..+
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677778888888888888888888888899999999999999988877766555555544443333
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.18 E-value=0.13 Score=46.63 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy4651 387 QADRGRRQAETELADAHEQLNELSAQ----ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL 462 (721)
Q Consensus 387 ~~~~~~~~l~~el~~l~~~l~~~~~~----~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l 462 (721)
.+......+..+++.++..+...... ++.++..+..+......++..+-+.....+.++...+....-+.++...+
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl 139 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 33333344444444444444433322 44444444444455555555555555555555555555544444444444
Q ss_pred HHHHHHH
Q psy4651 463 RAEQDHA 469 (721)
Q Consensus 463 ~~~~~~~ 469 (721)
...-.+.
T Consensus 140 n~aiEr~ 146 (189)
T 2v71_A 140 NQAIERN 146 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.09 E-value=0.12 Score=50.58 Aligned_cols=14 Identities=7% Similarity=0.136 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy4651 179 QRLATEVEDLQLEV 192 (721)
Q Consensus 179 ~~le~ei~~l~~~l 192 (721)
..++.++..+...+
T Consensus 35 ~~le~~~~~l~~~~ 48 (256)
T 3na7_A 35 DKALNDKEAKNKAI 48 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.08 E-value=0.16 Score=45.96 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4651 471 TQEKLRKALETQIKELQIRLDE 492 (721)
Q Consensus 471 ~le~~k~~Le~e~~~L~~~l~~ 492 (721)
.+.-...+|..++.||...+.-
T Consensus 158 ~l~~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 158 SLLVSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp HHHCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677777777776663
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.77 E-value=0.15 Score=43.80 Aligned_cols=103 Identities=23% Similarity=0.394 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLE-------QADRGRRQAETELADAHEQLN 407 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~-------~~~~~~~~l~~el~~l~~~l~ 407 (721)
.++.+..++..++..+......+..++.....+..+...|..++..-+..+. .+...+..|+..+.++..+++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544444444444444433333322 223334555566666666666
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4651 408 ELSAQATSISAAKRKLEGELQTLHSDLDEL 437 (721)
Q Consensus 408 ~~~~~~~~l~~~~~~le~el~~lk~~le~~ 437 (721)
+.......+....++++.++..++..+++.
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666554
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.53 E-value=0.31 Score=41.74 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309 (721)
Q Consensus 250 ~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~ 309 (721)
+.......+......|...+.++...+++.......+...+..++.++..++.++++++.
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666777777777777777777778888888888888888888777653
No 12
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.18 E-value=0.59 Score=40.94 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy4651 188 LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD 267 (721)
Q Consensus 188 l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~ 267 (721)
+..+|+........++.++..|+..+..+...+..+...-+........++..|..|...+.......+.+...+..|..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445544444455555555556556555555555544444444455666677777777777777777777777777777
Q ss_pred HHHHHHHHHhhccc
Q psy4651 268 EVKDLLDQIGEGGR 281 (721)
Q Consensus 268 e~~~l~~~l~~~~~ 281 (721)
.+++|...+.....
T Consensus 106 ~id~lEd~L~~~Ke 119 (155)
T 2efr_A 106 SIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776664333
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.02 E-value=0.4 Score=40.33 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhH
Q psy4651 355 RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434 (721)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~l 434 (721)
+.++.+......+.-++..+...+++++..++.....+..++.++..++..+++..-.+..|+..+..+..++.-++.-.
T Consensus 27 ~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 27 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455556666777788888888888888888888888888888888887777777777777777777666655
Q ss_pred HHH
Q psy4651 435 DEL 437 (721)
Q Consensus 435 e~~ 437 (721)
++.
T Consensus 107 eeE 109 (119)
T 3ol1_A 107 EEE 109 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.69 E-value=3.7 Score=53.75 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651 508 LEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLA 587 (721)
Q Consensus 508 ~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~ 587 (721)
++..+..++.++......+...+..+..++..+..++.+.+....+...++.++......+....+-+..+..+..++..
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 34456666666666666666667777777777777777777777666677777777776666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 588 KFRKAQQELEEAEER 602 (721)
Q Consensus 588 ~~~~l~~~l~e~e~~ 602 (721)
....+...+..+-.+
T Consensus 2092 ~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2092 QSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHH
Confidence 666666655554433
No 15
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.52 E-value=0.5 Score=37.38 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 475 LRKALETQIKELQIRLD 491 (721)
Q Consensus 475 ~k~~Le~e~~~L~~~l~ 491 (721)
....++..+..|..+|.
T Consensus 77 e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444444444
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.40 E-value=1.3 Score=38.85 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465 (721)
Q Consensus 422 ~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~ 465 (721)
.++.+|..+..++.+.....+.++..+.++...+..+...+...
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.36 E-value=5.2 Score=52.50 Aligned_cols=89 Identities=11% Similarity=0.215 Sum_probs=47.7
Q ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy4651 346 VQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEG 425 (721)
Q Consensus 346 l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~ 425 (721)
++.++..+..........+...+..+..+...+..++..++.....+..++.+++....++.....-+..|.....+=..
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 34444444444444444555555555666666666666666666666666666666666666555555444444444444
Q ss_pred HHHHHHhhH
Q psy4651 426 ELQTLHSDL 434 (721)
Q Consensus 426 el~~lk~~l 434 (721)
.+..+...+
T Consensus 2092 ~~~~l~~~~ 2100 (3245)
T 3vkg_A 2092 QSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 18
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.26 E-value=1.4 Score=38.42 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 449 KKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL 490 (721)
Q Consensus 449 ~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l 490 (721)
.....++..|...+...+..+...+..+..++.++++|...|
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888999999999999887655
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.88 E-value=0.75 Score=54.40 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy4651 150 RRKLQARLAEAEETIES 166 (721)
Q Consensus 150 ~k~l~~~l~~l~~~le~ 166 (721)
+..|+..+.+++..++.
T Consensus 923 ~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 20
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.84 E-value=0.45 Score=37.31 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4651 355 RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLH 431 (721)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk 431 (721)
+.+..+......+.-++..+...++.++..++.....|..++.++..++..+++..-.+..|+.++..+..+|.-++
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444445555566677777788888888878888888888888888888887777777777777777766654
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.75 E-value=1.2 Score=37.35 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q psy4651 329 NAEAQKNIKRYQQQLKDVQTALEE 352 (721)
Q Consensus 329 ~~~~~~~~~~l~~~l~~l~~~lee 352 (721)
+.+++.++..|..++.-++.-+++
T Consensus 85 r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666555554443
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.51 E-value=1.1 Score=52.89 Aligned_cols=21 Identities=19% Similarity=0.204 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4651 288 KARKRLEVEKDELQAALEEAE 308 (721)
Q Consensus 288 ~~~~~le~e~~~l~~~le~~~ 308 (721)
.....|+.+...|+.++++++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444454444
No 23
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.04 E-value=2.8 Score=36.49 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=3.2
Q ss_pred HHHhHHHHH
Q psy4651 346 VQTALEEEQ 354 (721)
Q Consensus 346 l~~~lee~~ 354 (721)
|...+.+..
T Consensus 63 L~~~l~~E~ 71 (154)
T 2ocy_A 63 LREDIAKEN 71 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.21 E-value=2.5 Score=33.39 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL 490 (721)
Q Consensus 434 le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l 490 (721)
|+.....+..++..+.....++..|...+...+..+..++..+..++.++++|...|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445556666677777777788888888888888888888887655
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.78 E-value=3.6 Score=35.07 Aligned_cols=16 Identities=6% Similarity=0.337 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhHH
Q psy4651 336 IKRYQQQLKDVQTALE 351 (721)
Q Consensus 336 ~~~l~~~l~~l~~~le 351 (721)
+..++.++..++..+.
T Consensus 84 i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 84 LAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3334444444433333
No 26
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.45 E-value=1.9 Score=33.77 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 400 ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDA 455 (721)
Q Consensus 400 ~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~ 455 (721)
.+|+.++..+......+...+..+...+.+++.+++.....+..++..+..+...+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv 58 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45666666666677777777777777777788888777666665555444444433
No 27
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.33 E-value=2.9 Score=36.40 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy4651 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTL 430 (721)
Q Consensus 395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~l 430 (721)
++.+|+...++++.....+..|+..++.+...+..+
T Consensus 85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333333333333333333
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.10 E-value=3.6 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhHH
Q psy4651 336 IKRYQQQLKDVQTALE 351 (721)
Q Consensus 336 ~~~l~~~l~~l~~~le 351 (721)
+..++.++..++..+.
T Consensus 86 i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 29
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=92.05 E-value=3.2 Score=32.67 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 419 ~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
.+..++.++..++..+.........++.....+..+..+|..++......+..|...+..|+..+.++..++.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555555555555555566666666677777777777777766554
No 30
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.62 E-value=4.6 Score=32.65 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy4651 513 RELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583 (721)
Q Consensus 513 ~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~ 583 (721)
..|..+.+........+...+..++.....+...+..+.+.+..+.++++.+...+......++.......
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444444444444444444444444444444444443333
No 31
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.76 E-value=5 Score=31.58 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNE 377 (721)
Q Consensus 335 ~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~e 377 (721)
.+..+..++..++..+......+.+++.....+..+...|..+
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666665555555555555444444444444443
No 32
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.59 E-value=5.9 Score=32.03 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4651 512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK 591 (721)
Q Consensus 512 ~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~ 591 (721)
+..|..+.+........+...+..++.....+...+..+.+.+..+.+.++.+...+......++.........++.+..
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444333333333333
Q ss_pred H
Q psy4651 592 A 592 (721)
Q Consensus 592 l 592 (721)
|
T Consensus 91 L 91 (101)
T 3u59_A 91 L 91 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.09 E-value=6.8 Score=31.98 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651 336 IKRYQQQLKDVQTALEEEQRARDDAR 361 (721)
Q Consensus 336 ~~~l~~~l~~l~~~lee~~~~~~~~~ 361 (721)
+..|+.++..++...+.....+.+++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333
No 34
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.24 E-value=8.9 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491 (721)
Q Consensus 447 ~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~ 491 (721)
.+.-+..++.--..++...+..+..+..++..|..++..|+.++.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455677777778888888888888888888888888877776554
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.17 E-value=9.5 Score=31.12 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 370 RANALQNELEESRQL 384 (721)
Q Consensus 370 ~~~~l~~ele~~~~~ 384 (721)
.+..|..+++.|+..
T Consensus 11 ~~~~L~~E~e~~k~K 25 (111)
T 2v66_B 11 DNQRLKYEVEALKEK 25 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 36
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.14 E-value=4.7 Score=34.06 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 170 KVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL 218 (721)
Q Consensus 170 ~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~ 218 (721)
.+..+.........++..|...+......+..++.....++.++.++..
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555556666666666655555555555555555555543
No 37
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.29 E-value=1.9 Score=36.43 Aligned_cols=8 Identities=0% Similarity=0.277 Sum_probs=2.9
Q ss_pred HHHHhHHH
Q psy4651 345 DVQTALEE 352 (721)
Q Consensus 345 ~l~~~lee 352 (721)
.|...+.+
T Consensus 50 ~L~~~l~e 57 (135)
T 2e7s_A 50 RLREDIAK 57 (135)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.32 E-value=13 Score=29.69 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4651 517 NELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579 (721)
Q Consensus 517 ~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~ 579 (721)
.++......-..+...+..++..-..+...+..+..+...+...-..+-.....+..++-++.
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344333334444444333333333333333333333443333333
No 39
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.73 E-value=12 Score=28.22 Aligned_cols=60 Identities=17% Similarity=0.307 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571 (721)
Q Consensus 512 ~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~ 571 (721)
+.+|++.|+...+....++.++.+.+..+-.+..+|.+....+..+..++..+..++..+
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777778888888887777777777777777666666555555554443
No 40
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=83.28 E-value=22 Score=30.82 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy4651 185 VEDLQLEVD 193 (721)
Q Consensus 185 i~~l~~~le 193 (721)
+..|...+.
T Consensus 54 ~~~lE~qLk 62 (147)
T 2b9c_A 54 MEIQEIQLK 62 (147)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 41
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=80.30 E-value=19 Score=28.14 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492 (721)
Q Consensus 417 ~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~ 492 (721)
+..+...+..|..++..+....... +.+.-+..++.--..++..+++-+..+...+..|...+.-|..++..
T Consensus 15 EeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 15 EEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333444445555554443322222 34456777777778888888888888888888888777777766553
No 42
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=80.21 E-value=21 Score=28.45 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 528 DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAE 607 (721)
Q Consensus 528 ~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e 607 (721)
.+...+..+...-..+...|..+.+....+..++..+......+...-..+=...+.+......+...+..+...+....
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555554444444444444444555555555555555555
Q ss_pred HHHHHHH
Q psy4651 608 QAVSKIR 614 (721)
Q Consensus 608 ~~~~~l~ 614 (721)
..++.|+
T Consensus 88 ~qLdkL~ 94 (96)
T 3q8t_A 88 MQLDKLK 94 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5555544
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.16 E-value=17 Score=27.61 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRA 195 (721)
Q Consensus 164 le~~~~~~~~le~~~~~le~ei~~l~~~le~~ 195 (721)
++.++.++..+-..+.-++.++++|+..-..+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444433
No 44
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.23 E-value=22 Score=28.13 Aligned_cols=18 Identities=11% Similarity=0.414 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhHHH
Q psy4651 399 LADAHEQLNELSAQATSI 416 (721)
Q Consensus 399 l~~l~~~l~~~~~~~~~l 416 (721)
+.+|+..++.+......+
T Consensus 58 i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.68 E-value=24 Score=27.84 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQ 487 (721)
Q Consensus 456 ~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~ 487 (721)
..|.+.+...=.++-.|+..+..|+.++..+.
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555566666666666666665554
No 46
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.46 E-value=27 Score=27.79 Aligned_cols=74 Identities=11% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4651 543 LSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 543 l~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~ 616 (721)
+........-.+.++.++...+.=.+.-++..+++.+.....+..+.++..+.++........+...+..++..
T Consensus 7 vEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 7 VEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566677777777777777777777776666666666666666655555555555555444444
No 47
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=76.13 E-value=19 Score=27.14 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q psy4651 659 ENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVAAI 715 (721)
Q Consensus 659 e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~~l~~~~~~~~~~~ 715 (721)
+.+|+.++-.+...+++|+.-.+-..++..-+.+|+..|..|...-.+.-+...-+.
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888899999888888889999999998888888776665555544443
No 48
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.13 E-value=30 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4651 330 AEAQKNIKRYQQQLKDVQTALEEEQRA 356 (721)
Q Consensus 330 ~~~~~~~~~l~~~l~~l~~~lee~~~~ 356 (721)
.+..+.+..|..++..|...+++....
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666655444
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.74 E-value=29 Score=26.40 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIG 78 (721)
Q Consensus 14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~ 78 (721)
..+|+.+|..+-..+.-+...+.++......+..+...+....+.+......|..+....+..+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666656566555555555444
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.37 E-value=88 Score=32.74 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q psy4651 339 YQQQLKDVQTALEEEQRARDD 359 (721)
Q Consensus 339 l~~~l~~l~~~lee~~~~~~~ 359 (721)
+...|.+|+..|++..+...+
T Consensus 62 ltkrINELKnqLEdlsKnsKd 82 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKD 82 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchh
Confidence 333444444444444433333
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.44 E-value=57 Score=28.05 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 451 AMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL 490 (721)
Q Consensus 451 l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l 490 (721)
....+..+..++..++-....++.....|+.+...|-.+.
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555556666665554443
No 52
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.42 E-value=45 Score=26.52 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy4651 49 VEDLQLEVDRANAIA 63 (721)
Q Consensus 49 ~~~l~~~l~~~~~~~ 63 (721)
+.-|+..++++...+
T Consensus 32 VdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 32 VDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 53
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=66.50 E-value=44 Score=25.97 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q psy4651 663 KNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVR 711 (721)
Q Consensus 663 k~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~~l~~~~~~~ 711 (721)
-.+|..|+.|.+.|+.+..+-..-.+-=+.|+..|..|..+|..+..+.
T Consensus 42 aTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 42 NSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999998877655555556789999999999998876543
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.66 E-value=1.4e+02 Score=31.41 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy4651 291 KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352 (721)
Q Consensus 291 ~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~lee 352 (721)
.-|.+.+.+++..+.+++.+-..+...+..|+..|....+..++.+..++.++..+..++.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444444444444444433333334444444444444444443
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.52 E-value=1.3e+02 Score=31.60 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=26.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Q psy4651 570 TYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSK-IRTK 616 (721)
Q Consensus 570 ~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~-l~~~ 616 (721)
.|++.+..++..+......++-|+..|.++...+..++..++. ++.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444455666666666666666666666652 3444
No 56
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.33 E-value=61 Score=26.88 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 598 EAEERADLAEQAVSKIR 614 (721)
Q Consensus 598 e~e~~~~~~e~~~~~l~ 614 (721)
+.+......+....+|+
T Consensus 96 e~E~kAqa~Eerf~KLK 112 (120)
T 3i00_A 96 EIERKAQANEQRYSKLK 112 (120)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344443333
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.27 E-value=69 Score=25.81 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 371 ANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410 (721)
Q Consensus 371 ~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~ 410 (721)
+.-|..+++-.+..+......|.++..+.+.|..++..+.
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 3444455555555554444455555555555555444433
No 58
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=58.53 E-value=61 Score=25.03 Aligned_cols=16 Identities=0% Similarity=0.383 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhHH
Q psy4651 336 IKRYQQQLKDVQTALE 351 (721)
Q Consensus 336 ~~~l~~~l~~l~~~le 351 (721)
+..++.++..++..+.
T Consensus 37 i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 37 LAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.77 E-value=91 Score=25.27 Aligned_cols=15 Identities=7% Similarity=0.352 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhH
Q psy4651 336 IKRYQQQLKDVQTAL 350 (721)
Q Consensus 336 ~~~l~~~l~~l~~~l 350 (721)
+..++.++..|..+|
T Consensus 73 vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 73 VEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444333333
No 60
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=51.43 E-value=1e+02 Score=25.39 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4651 587 AKFRKAQQELEEAEERA 603 (721)
Q Consensus 587 ~~~~~l~~~l~e~e~~~ 603 (721)
..+..|.-+.+.+...+
T Consensus 140 dSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 140 DSFEKLSMENENLKEKI 156 (167)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhHHHHH
Confidence 33444444444444443
No 61
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=50.95 E-value=36 Score=28.13 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4651 338 RYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESR 382 (721)
Q Consensus 338 ~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~ 382 (721)
.|-.++.+.+.+|+.+...+..+...+..++..+..+..++++++
T Consensus 6 SL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~k 50 (130)
T 3cl3_D 6 GSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQ 50 (130)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455555666666666666666666666666666666665544
No 62
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.75 E-value=54 Score=24.26 Aligned_cols=45 Identities=27% Similarity=0.253 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 58 (721)
Q Consensus 14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~ 58 (721)
+.+|+..+....++|-.-...+..+++.+......+..|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.77 E-value=2.6e+02 Score=29.34 Aligned_cols=8 Identities=13% Similarity=-0.018 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy4651 265 LADEVKDL 272 (721)
Q Consensus 265 l~~e~~~l 272 (721)
+...+.++
T Consensus 454 ~~~~~~~~ 461 (487)
T 3oja_A 454 LKKLNGEA 461 (487)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhh
Confidence 33333333
No 64
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.88 E-value=1.2e+02 Score=25.05 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL 409 (721)
Q Consensus 370 ~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~ 409 (721)
-+.-|..+++.-+....+....-.+|..+.+.+.+++.-+
T Consensus 120 TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mY 159 (167)
T 4gkw_A 120 TIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHY 159 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3344445555555555555555555556666666655544
No 65
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.57 E-value=85 Score=23.37 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy4651 395 AETELAD 401 (721)
Q Consensus 395 l~~el~~ 401 (721)
|-..+++
T Consensus 35 LI~rvdE 41 (77)
T 2w83_C 35 LIAKVDE 41 (77)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 66
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=46.19 E-value=1.1e+02 Score=24.18 Aligned_cols=6 Identities=0% Similarity=0.556 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy4651 340 QQQLKD 345 (721)
Q Consensus 340 ~~~l~~ 345 (721)
+.++..
T Consensus 50 E~eL~~ 55 (95)
T 3mov_A 50 EREMAE 55 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 67
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.65 E-value=99 Score=23.32 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRL 181 (721)
Q Consensus 150 ~k~l~~~l~~l~~~le~~~~~~~~le~~~~~l 181 (721)
++.+...+...+.+++.+..--+.|..-...+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL 44 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Confidence 33444444444444444444333333333333
No 68
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=42.62 E-value=1.3e+02 Score=24.84 Aligned_cols=66 Identities=8% Similarity=0.186 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4651 511 RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDR----KNHERMQDLVDKLQQKIKTYKRQIE 576 (721)
Q Consensus 511 ~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~----~~~~~l~~~~~~l~~~l~~~~~~le 576 (721)
.+.+.++.|+........++..+..+...+..+...+++.. ..+..+.-++.++...++.-+....
T Consensus 10 ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~ 79 (130)
T 3cl3_D 10 ELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAAS 79 (130)
T ss_dssp -----------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555532 2333444444555554444443333
No 69
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=42.03 E-value=1.1e+02 Score=23.09 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 515 LENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQ 558 (721)
Q Consensus 515 l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~ 558 (721)
|.-.+..+..++...+..+...+..+..++.++.....++..++
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333334444444444445555555555555444443333
No 70
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.28 E-value=1.4e+02 Score=23.98 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 163 TIESLNQKVIALEKTKQRLATEVEDLQLEV 192 (721)
Q Consensus 163 ~le~~~~~~~~le~~~~~le~ei~~l~~~l 192 (721)
.+..+...+..+...+..+...+..+...+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 71
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.75 E-value=1.3e+02 Score=23.43 Aligned_cols=21 Identities=10% Similarity=0.302 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy4651 596 LEEAEERADLAEQAVSKIRTK 616 (721)
Q Consensus 596 l~e~e~~~~~~e~~~~~l~~~ 616 (721)
-+.+......+...+..+..+
T Consensus 63 REkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 63 REKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 72
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=39.22 E-value=1.3e+02 Score=23.05 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhHH
Q psy4651 336 IKRYQQQLKDVQTALE 351 (721)
Q Consensus 336 ~~~l~~~l~~l~~~le 351 (721)
+..++.++..++..+.
T Consensus 35 i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 73
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.82 E-value=1e+02 Score=21.71 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 18 QARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEV 56 (721)
Q Consensus 18 ~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l 56 (721)
...+......+......+..+...+..+...++.+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 74
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.45 E-value=1.3e+02 Score=22.67 Aligned_cols=50 Identities=22% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIA 63 (721)
Q Consensus 14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~ 63 (721)
-..|-..+..|.-.+.++.+.+..-++.+.....++..|+..+..-...+
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 34555566666666666666666666666666655555555555444443
No 75
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.80 E-value=1.5e+02 Score=22.88 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=15.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 8 LNKLKTKRKLQARLAEAEETIESLNQKVI 36 (721)
Q Consensus 8 ~~~~~~~k~l~~~~~~l~~~le~~~~~~~ 36 (721)
|+-.+....+...|..+...+..+...+.
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555554443
No 76
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=32.32 E-value=1.6e+02 Score=24.99 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy4651 393 RQAETELADAH 403 (721)
Q Consensus 393 ~~l~~el~~l~ 403 (721)
+.+..++..+.
T Consensus 83 k~~ea~la~l~ 93 (146)
T 2xnx_M 83 GNAKLELDQLS 93 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 33333333333
No 77
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.09 E-value=1.9e+02 Score=22.23 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4651 173 ALEKTKQRLATEVEDLQLEVDR 194 (721)
Q Consensus 173 ~le~~~~~le~ei~~l~~~le~ 194 (721)
.+...+..++.++..+..++..
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 78
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.50 E-value=1.3e+02 Score=20.14 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy4651 308 EAALEQE 314 (721)
Q Consensus 308 ~~~l~~~ 314 (721)
++.++.+
T Consensus 11 e~~ld~L 17 (46)
T 3swy_A 11 GSSLDTL 17 (46)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 79
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.87 E-value=2.3e+02 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 369 RRANALQNELEESRQLLEQADRGRRQAETELADAH 403 (721)
Q Consensus 369 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~ 403 (721)
+.......++.-.+....++.+.+..|...+..+.
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.39 E-value=5.3e+02 Score=26.88 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy4651 236 NYSTELFRLKGAYEEAQEQLEA 257 (721)
Q Consensus 236 ~le~e~~~l~~ele~~~~~~e~ 257 (721)
.+..+..+++..+.+....+..
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 446 QLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhhhHh
Confidence 3333334444444333333333
No 81
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=28.21 E-value=4e+02 Score=25.49 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=4.3
Q ss_pred HHHHHHHhhHH
Q psy4651 425 GELQTLHSDLD 435 (721)
Q Consensus 425 ~el~~lk~~le 435 (721)
..+.+++..+.
T Consensus 176 ~~~eeLr~~L~ 186 (273)
T 3s84_A 176 ASAEELRQRLA 186 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 82
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.03 E-value=1.9e+02 Score=21.43 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKD 345 (721)
Q Consensus 304 le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 345 (721)
+..+++.++.++.+..++-+++......+...+..++..+..
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444444444444444444444443
No 83
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.89 E-value=2.1e+02 Score=21.82 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD 435 (721)
Q Consensus 395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le 435 (721)
++..+++.-.-++...-.+..++..+.+.+...+-+.-.+.
T Consensus 51 l~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLa 91 (101)
T 1d7m_A 51 LEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLA 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33333333333333333344444444444444444433333
No 84
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.73 E-value=2e+02 Score=21.38 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q psy4651 297 KDELQAALEEA 307 (721)
Q Consensus 297 ~~~l~~~le~~ 307 (721)
+.+++.+++.+
T Consensus 11 l~eiRaQYE~i 21 (77)
T 3trt_A 11 MRDVRQQYESV 21 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444445443
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.35 E-value=1.8e+02 Score=20.81 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy4651 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433 (721)
Q Consensus 397 ~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~ 433 (721)
.....+...+..+......|...+..+..++..|+.-
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555543
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.87 E-value=1.2e+02 Score=31.28 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 166 SLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLK 219 (721)
Q Consensus 166 ~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~ 219 (721)
.+...+..++..+..++..+..+...+..+.......+...+.+-..+.++++.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333344444444444444444444444444444444444455555556665543
No 87
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.63 E-value=1.7e+02 Score=20.01 Aligned_cols=10 Identities=0% Similarity=-0.071 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy4651 545 FQAEEDRKNH 554 (721)
Q Consensus 545 ~~l~~~~~~~ 554 (721)
.++..+...+
T Consensus 16 ~~l~~L~~rN 25 (51)
T 3m91_A 16 ARIDSLAARN 25 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 88
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=24.29 E-value=2.4e+02 Score=21.54 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 370 RANALQNELEESRQLLEQADRGRRQAE 396 (721)
Q Consensus 370 ~~~~l~~ele~~~~~~~~~~~~~~~l~ 396 (721)
.+..++..++.-+...+.+-+.+..+.
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~ 31 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLN 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHH
Confidence 344455555554444444444444333
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.11 E-value=2.2e+02 Score=21.15 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4651 541 KELSFQAEEDRKNHERMQDLV 561 (721)
Q Consensus 541 ~el~~~l~~~~~~~~~l~~~~ 561 (721)
+++-.+++++..+...+..++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El 53 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGEL 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 344444444443333333333
No 90
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.04 E-value=2.8e+02 Score=21.90 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy4651 175 EKTKQRLATEVEDLQLEVDRANAIANAAEKKAK------------AIDKIIGEWKLKVDDLAAELDASQKECRNYST 239 (721)
Q Consensus 175 e~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~------------~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~ 239 (721)
++.+..++..|.++..+|+.....+..+.+-.. .++.+|.+...+++.+..++-..+.-+..++.
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 91
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.56 E-value=3e+02 Score=22.09 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy4651 476 RKALETQIKELQI 488 (721)
Q Consensus 476 k~~Le~e~~~L~~ 488 (721)
...++.++.++..
T Consensus 29 ~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 29 KQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 92
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.52 E-value=2.6e+02 Score=21.33 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 173 ALEKTKQRLATEVEDLQLEVDRANAIANAA 202 (721)
Q Consensus 173 ~le~~~~~le~ei~~l~~~le~~~~~~~~~ 202 (721)
.+...+..++.+|..|...++........+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 93
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.94 E-value=2.9e+02 Score=21.66 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=22.3
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 143 PYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA 195 (721)
Q Consensus 143 ~~~le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~ 195 (721)
+..+...+..|+..+.+++..... .+..+...+..++.++..+..++...
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566556555543322 33344444445555555554444443
No 94
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.58 E-value=3.3e+02 Score=21.75 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 475 LRKALETQIKELQIRLDEA 493 (721)
Q Consensus 475 ~k~~Le~e~~~L~~~l~~~ 493 (721)
....+...+..+...+..+
T Consensus 25 ~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 25 RIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555544
Done!