Query psy4651
Match_columns 721
No_of_seqs 440 out of 2979
Neff 9.6
Searched_HMMs 13730
Date Fri Aug 16 22:17:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4651.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4651hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 39.4 70 0.0051 23.9 9.3 25 16-40 32-56 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 28.0 1.1E+02 0.0079 22.6 11.5 10 536-545 27-36 (107)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 27.3 1.1E+02 0.0081 22.6 12.2 18 476-493 24-41 (107)
4 d2ap3a1 a.24.27.1 (A:12-196) H 25.7 1.4E+02 0.01 23.2 19.8 55 253-307 116-170 (185)
5 d1seta1 a.2.7.1 (A:1-110) Sery 18.1 1.8E+02 0.013 21.4 11.3 19 473-491 34-52 (110)
6 d1vcsa1 a.47.2.1 (A:8-96) Vesi 3.9 6.3E+02 0.046 17.4 7.1 54 301-354 30-87 (89)
7 d1grja1 a.2.1.1 (A:2-79) GreA 2.5 8.6E+02 0.062 16.3 4.9 57 651-707 10-71 (78)
8 d2efla1 a.238.1.4 (A:1-288) Fo 2.4 1.3E+03 0.098 18.5 20.7 139 329-467 77-218 (288)
9 d2azeb1 e.63.1.2 (B:201-301) T 2.3 1E+03 0.073 16.8 6.1 41 156-196 2-42 (101)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 2.1 9.6E+02 0.07 16.0 6.5 39 157-195 47-85 (88)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=39.39 E-value=70 Score=23.89 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 16 KLQARLAEAEETIESLNQKVIALEK 40 (721)
Q Consensus 16 ~l~~~~~~l~~~le~~~~~~~~~~~ 40 (721)
.+......+...++.++..+..+.+
T Consensus 32 ~ld~~rr~l~~~~e~l~~~rN~~sk 56 (110)
T d1seta1 32 ALDREVQELKKRLQEVQTERNQVAK 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.01 E-value=1.1e+02 Score=22.63 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy4651 536 TERRIKELSF 545 (721)
Q Consensus 536 l~~~l~el~~ 545 (721)
+...+.+...
T Consensus 27 le~q~~E~~~ 36 (107)
T d1fxka_ 27 VEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.34 E-value=1.1e+02 Score=22.55 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4651 476 RKALETQIKELQIRLDEA 493 (721)
Q Consensus 476 k~~Le~e~~~L~~~l~~~ 493 (721)
+..|+.++.+...-++.+
T Consensus 24 ~~~le~q~~E~~~vl~eL 41 (107)
T d1fxka_ 24 KQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 4
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=25.67 E-value=1.4e+02 Score=23.22 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 253 EQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307 (721)
Q Consensus 253 ~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~ 307 (721)
..+..+......+...+..+...+.........+......+...+..+...+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 170 (185)
T d2ap3a1 116 KLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKY 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455555555555555555555555555555544444444433
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=18.11 E-value=1.8e+02 Score=21.41 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4651 473 EKLRKALETQIKELQIRLD 491 (721)
Q Consensus 473 e~~k~~Le~e~~~L~~~l~ 491 (721)
......+..+++.|+.+..
T Consensus 34 d~~rr~l~~~~e~l~~~rN 52 (110)
T d1seta1 34 DREVQELKKRLQEVQTERN 52 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 6
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.86 E-value=6.3e+02 Score=17.45 Aligned_cols=54 Identities=15% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4651 301 QAALEEAEAALEQEENKVLRAQLELSQ----ANAEAQKNIKRYQQQLKDVQTALEEEQ 354 (721)
Q Consensus 301 ~~~le~~~~~l~~~e~~~~~~~~~l~~----~~~~~~~~~~~l~~~l~~l~~~lee~~ 354 (721)
+..+.+.+..++.+..-+..+..++.. .+..+...++.+...+..|+.++-.+.
T Consensus 30 k~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~ 87 (89)
T d1vcsa1 30 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 7
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.46 E-value=8.6e+02 Score=16.29 Aligned_cols=57 Identities=19% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhchHHHHHhHhhHHHHHHHHHHhH-----HHHHhcHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4651 651 LFLLEEEFENTRKNHQRALDSMQASL-----EAEAKGKAEALRMKKKLEADINELEIALDHA 707 (721)
Q Consensus 651 l~~~~ee~e~~rk~~~~~v~~l~~~l-----e~e~~~~~~~~~~k~~le~~i~~l~~~l~~~ 707 (721)
+..+..+++.++..-.+.|..-.... -.|-.....+-.....++.-|.+|+..|.+|
T Consensus 10 ~~~L~~EL~~L~~~~rpei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~~a 71 (78)
T d1grja1 10 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 71 (78)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhCc
No 8
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.41 E-value=1.3e+03 Score=18.53 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 329 NAEAQKNIKRYQQQLKDVQTA-LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLN 407 (721)
Q Consensus 329 ~~~~~~~~~~l~~~l~~l~~~-lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~ 407 (721)
..........+..-...+... ++.+..-+.+....+..+......+...+......+....+.......+++.+...+.
T Consensus 77 ~~~~~~~a~~h~~~a~~l~~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~ 156 (288)
T d2efla1 77 LNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFE 156 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy4651 408 ELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDA--ARLADELRAEQD 467 (721)
Q Consensus 408 ~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~--~~l~~~l~~~~~ 467 (721)
..............++..........+......+...-.........+ ..+..-+...+.
T Consensus 157 ~~~~~~~~~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~ 218 (288)
T d2efla1 157 KMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQE 218 (288)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.34 E-value=1e+03 Score=16.80 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 156 RLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN 196 (721)
Q Consensus 156 ~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~ 196 (721)
.+..++.++..+...-..|..-+..++..+..+..+.+...
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k 42 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQR 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhcc
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.13 E-value=9.6e+02 Score=16.00 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651 157 LAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA 195 (721)
Q Consensus 157 l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~ 195 (721)
|.....-|..+......+...+..+..+...|...+..+
T Consensus 47 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!