RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4651
(721 letters)
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 390 bits (1004), Expect = e-124
Identities = 286/537 (53%), Positives = 367/537 (68%), Gaps = 67/537 (12%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
++KL +++E EE E+ N K +LEKTK RL +E+EDLQ+E++RANA A+ EKK K
Sbjct: 323 KKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNF 382
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
DKI+ EWK KVD+L AELD +Q+E RN STELFRLK EE ++Q+EA+RRENKNL DE+
Sbjct: 383 DKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEI 442
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
DL DQ+GEGGRN+HE+EKAR+RLE EKDELQAALEEAEAALE EE+KVLRAQ+ELSQ
Sbjct: 443 HDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIR 502
Query: 330 AEAQKNI-----------KRYQQQLKDVQTALEEEQRARDDA------------------ 360
+E ++ + K +Q+ ++ +Q LE E + + +A
Sbjct: 503 SEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIAL 562
Query: 361 -----------------REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD-- 401
++Q+ ++ + Q E++R+ L A+R E EL +
Sbjct: 563 DHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELR 622
Query: 402 ------------AHEQLNELSAQATSISA-------AKRKLEGELQTLHSDLDELLNEAK 442
A +L E S + ++A KRKLEGEL L SDLDE +NE K
Sbjct: 623 SALEQAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELK 682
Query: 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK 502
+EE+AKKA DAARLA+ELR EQ+H+Q E+LRK LE+Q+KELQ+RLDEAE ALKGGK
Sbjct: 683 AAEERAKKAQADAARLAEELRQEQEHSQHLERLRKQLESQVKELQVRLDEAEAAALKGGK 742
Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
K IQKLE RVRELE ELDGEQRRHA+ QKNLRK ERR+KEL FQ EED+KN ER+QDLVD
Sbjct: 743 KMIQKLEARVRELEAELDGEQRRHAETQKNLRKMERRVKELQFQVEEDKKNLERLQDLVD 802
Query: 563 KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGS 619
KLQ KIKTYKRQ+EEAEE+A +NL+K+RKAQ+ELE+AEERAD AE++++K+R K
Sbjct: 803 KLQAKIKTYKRQLEEAEEVAQINLSKYRKAQRELEDAEERADTAERSLNKLRAKSRR 859
Score = 132 bits (333), Expect = 1e-31
Identities = 170/587 (28%), Positives = 282/587 (48%), Gaps = 48/587 (8%)
Query: 150 RRKLQARLAEAEETIESLNQK-------VIALEKTKQRLATEVEDLQLEVDRANAIANAA 202
+R+L+ +L E + L+ K V L+K + L + +L+ E++ A A
Sbjct: 6 KRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKA 65
Query: 203 EKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE- 261
EK + + + E ++++ A + + EL +L+ EEA Q E
Sbjct: 66 EKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEEALATL 125
Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRA 321
K D + +L +QI + + + EK + +L+ E D+L A L++ A E K +
Sbjct: 126 RKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQL 185
Query: 322 QLELSQANA---EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNEL 378
+ +LS+ E Q+ + Q +Q+ + R ++A Q+ + + + L+++L
Sbjct: 186 ESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQL 245
Query: 379 EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD--- 435
EE+++ LE+ R R + +L L+ L Q S AK +LE +L ++++
Sbjct: 246 EEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWR 305
Query: 436 -----ELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL 490
E A+ EE KK + L + A + EK + L++++++LQI L
Sbjct: 306 SKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIEL 365
Query: 491 DEAENNAL------KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELS 544
+ A A K K + + +++V EL+ ELD QR + L + + ++EL
Sbjct: 366 ERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELK 425
Query: 545 FQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
Q E R+ ++ +QD + L ++ R + E E+ A+ + Q LEEAE +
Sbjct: 426 DQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALE 485
Query: 605 LAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKN 664
L E V + + + QI S++ L EEEFENTRKN
Sbjct: 486 LEESKVLRAQVE-----------------------LSQIRSEIERRLAEKEEEFENTRKN 522
Query: 665 HQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVR 711
HQRA++S+QA+LEAEAKGKAEA R+KKKLE DINELEIALDHANK
Sbjct: 523 HQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKAN 569
Score = 100 bits (252), Expect = 6e-22
Identities = 146/580 (25%), Positives = 259/580 (44%), Gaps = 25/580 (4%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
++L+++L+E + ++ L +++ L K RL +E DL +++ A A + K +
Sbjct: 182 AKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQL 241
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
+ + E K +++ + E Q + R +L L+ EE E + R+ E+
Sbjct: 242 ESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEI 301
Query: 270 KDLLDQIGEGGRNIH-EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL--- 325
+ + G E+E+ +K+L + EL+ A E A A + E R Q EL
Sbjct: 302 QQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDL 361
Query: 326 -------SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNEL 378
+ A +E +K K + + L + + ++E Q D A+ + + L+NEL
Sbjct: 362 QIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNEL 421
Query: 379 EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438
EE + +E R + + E+ D +QL E + A+R+LE E L + L+E
Sbjct: 422 EELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAE 481
Query: 439 NEAKNSEEKAKKAMVDAARLADEL-RAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA 497
+ E K +A V+ +++ E+ R + + E RK + I+ LQ L EAE
Sbjct: 482 AALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATL-EAEAKG 540
Query: 498 LKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERM 557
+ +KLE + ELE LD + +A+AQKN++K ++++KEL Q EE+++ E
Sbjct: 541 KAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDA 600
Query: 558 QDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEER-ADLAEQAVSKIRTK 616
++ + +++ + ++EE ++A+ EL EA ER +L Q S I K
Sbjct: 601 REQLAVAERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSSLIAQK 660
Query: 617 GGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEF----------ENTRKNHQ 666
++ + + + K L EE E RK +
Sbjct: 661 RKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLERLRKQLE 720
Query: 667 RALDSMQASL-EAEAKGKAEALRMKKKLEADINELEIALD 705
+ +Q L EAEA +M +KLEA + ELE LD
Sbjct: 721 SQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAELD 760
Score = 85.9 bits (213), Expect = 3e-17
Identities = 150/651 (23%), Positives = 275/651 (42%), Gaps = 80/651 (12%)
Query: 14 KRKLQARLAEAEETIESLNQK-------VIALEKTKQRLATEVEDLQLEVDRANAIANAA 66
KR+L+ +L E + L+ K V L+K + L + +L+ E++ A A
Sbjct: 6 KRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKA 65
Query: 67 EKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEW-KLKGSLDFINT 125
EK L L+ +R A + + K E KL+ L+
Sbjct: 66 EKARA---------DLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLE---- 112
Query: 126 LYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEV 185
E +L+H L R+K Q + E E IE L ++ EK K +L EV
Sbjct: 113 -----------EANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEV 161
Query: 186 EDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK 245
+DL ++D+ AEKKAK ++ + E ++K+D+L +L+ + +E L
Sbjct: 162 DDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLT 221
Query: 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALE 305
EEA+ Q+ + + L ++++ + E R ++ ++LE + D L+ LE
Sbjct: 222 RQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLE 281
Query: 306 EAEAALEQEENKVLRAQLELSQANA-----------EAQKNIKRYQQQLKDVQTALEEEQ 354
E A + E ++ +A E+ Q + E ++ K+ Q++ +++ A E
Sbjct: 282 EESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAAN 341
Query: 355 RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT 414
D + ++ LQ ELE + + ++ ++ + LA+ +++EL A+
Sbjct: 342 AKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELD 401
Query: 415 SISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEK 474
+ R L EL L ++L+EL ++ + + K + L D+L + EK
Sbjct: 402 TAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEK 461
Query: 475 LRKALETQIKELQIRLDEAENNALKGGKKAIQKLE------------------------- 509
R+ LE + ELQ L+EAE AL+ + + + +
Sbjct: 462 ARRRLEAEKDELQAALEEAE-AALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTR 520
Query: 510 ----QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ-------AEEDRKNHERMQ 558
+ + L+ L+ E + A+A + +K E I EL E +KN ++ Q
Sbjct: 521 KNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQ 580
Query: 559 DLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
V +LQ +++ +R E+A E A+ + + ELEE + AE+A
Sbjct: 581 QQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERA 631
Score = 72.8 bits (179), Expect = 4e-13
Identities = 131/580 (22%), Positives = 248/580 (42%), Gaps = 55/580 (9%)
Query: 135 LNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 194
L E +L+H L R+K Q + E E IE L ++ EK K +L EV+DL ++D+
Sbjct: 111 LEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQ 170
Query: 195 ANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ 254
AEKKAK ++ + E ++K+D+L +L+ + +E L EEA+ Q
Sbjct: 171 IAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQ 230
Query: 255 LEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQE 314
+ + + L ++++ + E R ++ ++LE + D L+ LEE A +
Sbjct: 231 VSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAEL 290
Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
E + LS+ANAE Q+ +++ + LEE ++ + ++ + L
Sbjct: 291 ERQ-------LSKANAEIQQWRSKFESEGALRAEELEELKKK----------LNQKISEL 333
Query: 375 QNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
+ E + + ++ + + ++EL D +L +A A+ + ++ + L +
Sbjct: 334 EEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKV 393
Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
DEL E ++ +A+ + RL +EL +D + + K L+ +I +L +L E
Sbjct: 394 DELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGE-- 451
Query: 495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
G + + +LE+ R LE E D Q +A+ L E ++
Sbjct: 452 ------GGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKV-------------- 491
Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
R Q + +++ +I+ + EE E N + ++ Q EAE + + K
Sbjct: 492 LRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKK-- 549
Query: 615 TKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQA 674
KL + +I + +K ++++ K Q ++ Q
Sbjct: 550 -------------KLEGDINEL-EIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQR 595
Query: 675 SLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVAA 714
+ E + A A R LEA++ EL AL+ A + R A
Sbjct: 596 AREDAREQLAVAERRATALEAELEELRSALEQAERARKQA 635
Score = 55.0 bits (133), Expect = 1e-07
Identities = 79/318 (24%), Positives = 138/318 (43%), Gaps = 16/318 (5%)
Query: 293 LEVEKDELQAALEEAEAALEQ-----EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ 347
LE +K EL+ L E+ L Q E+ + L AQL QK IK + ++++++
Sbjct: 2 LERQKRELENQLYRKESELSQLSSKLEDEQALVAQL---------QKKIKELEARIRELE 52
Query: 348 TALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLN 407
LE E+ AR A + + R L LEE+ ++ E ELA + L
Sbjct: 53 EELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLE 112
Query: 408 ELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK-KAMVDAARLADELRAEQ 466
E + Q A RK + S+ E L + K EK K + + L +L
Sbjct: 113 EANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIA 172
Query: 467 DHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRH 526
EK K LE+Q+ ELQ++LDE L +L+ +L +L+ + +
Sbjct: 173 KAKLNAEKKAKQLESQLSELQVKLDEL-QRQLNDLTSQKSRLQSENSDLTRQLEEAEAQV 231
Query: 527 ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNL 586
++ K + E +++E EE+ + +Q + +L+ + + + Q+EE E A
Sbjct: 232 SNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELE 291
Query: 587 AKFRKAQQELEEAEERAD 604
+ KA E+++ + +
Sbjct: 292 RQLSKANAEIQQWRSKFE 309
Score = 51.2 bits (123), Expect = 2e-06
Identities = 93/460 (20%), Positives = 198/460 (43%), Gaps = 63/460 (13%)
Query: 2 GEQIDQLNKLKTKRK-LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN 60
E DQ+ L+ + K LQ + + + + + V LEK ++RL E ++LQ ++ A
Sbjct: 422 EELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAE 481
Query: 61 AIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSL 120
A E K Q+E+ + I + E++ ++ E K
Sbjct: 482 AALELEESKVLR-------------AQVEL---SQIRSEIERRLAEKEEEF-ENTRKNHQ 524
Query: 121 DFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQR 180
I +L L E K ++KL+ + E E ++ N+ +K ++
Sbjct: 525 RAIESLQATL------EAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKK 578
Query: 181 LATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQK-------- 232
+V++LQ +V+ A ++ ++ + ++++L + L+ +++
Sbjct: 579 YQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETE 638
Query: 233 --------------------ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDL 272
+ R EL L+ +EA +L+A K + L
Sbjct: 639 LAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARL 698
Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKV----------LRAQ 322
+++ + + +E+ RK+LE + ELQ L+EAEAA + K+ L A+
Sbjct: 699 AEELRQEQEHSQHLERLRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAE 758
Query: 323 LEL-SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEES 381
L+ + +AE QKN+++ ++++K++Q +EE+++ + ++ + ++ + + +LEE+
Sbjct: 759 LDGEQRRHAETQKNLRKMERRVKELQFQVEEDKKNLERLQDLVDKLQAKIKTYKRQLEEA 818
Query: 382 RQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKR 421
++ + R+A+ EL DA E+ + + A R
Sbjct: 819 EEVAQINLSKYRKAQRELEDAEERADTAERSLNKLRAKSR 858
Score = 42.7 bits (101), Expect = 6e-04
Identities = 78/370 (21%), Positives = 156/370 (42%), Gaps = 14/370 (3%)
Query: 352 EEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
E +R + + QL E + L ++LE+ + L+ Q + ++ E + + E+L A
Sbjct: 1 ELERQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERA 60
Query: 412 QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQ-DHAQ 470
A+ L EL+ L L+E E KK + A+L +L H +
Sbjct: 61 ARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEE 120
Query: 471 TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ 530
LRK + I EL ++++ + K +K +L+ V +L +LD + +A+
Sbjct: 121 ALATLRKKHQDAINELSEQIEQLQKQKAK-AEKEKSQLQAEVDDLLAQLDQIAKAKLNAE 179
Query: 531 KNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFR 590
K ++ E ++ EL + +E ++ + +LQ + RQ+EEAE +
Sbjct: 180 KKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKS 239
Query: 591 KAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPL------------KLVCSVTFCRQ 638
+ + +LEEA+ + + + ++ + + L +L ++
Sbjct: 240 QLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANA 299
Query: 639 ITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADIN 698
Q SK L EE E +K + + ++ + EA + K +L++++
Sbjct: 300 EIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELE 359
Query: 699 ELEIALDHAN 708
+L+I L+ AN
Sbjct: 360 DLQIELERAN 369
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 82.1 bits (203), Expect = 6e-16
Identities = 81/350 (23%), Positives = 181/350 (51%), Gaps = 4/350 (1%)
Query: 224 AAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNI 283
A ++E + EL L+ E+ +E+L++++ E ++L D +++L Q+ E R +
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718
Query: 284 HEVEKARKRLEVEKDELQA---ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ 340
E+++ LE E ++LQ+ LEE LE+E ++ EL + ++ + + +
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
+++++++ + Q ++ E+L ERR +AL+ ELE Q E+ ++ + E E+
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838
Query: 401 DAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLAD 460
+ E+L+EL + + +L+ EL+ L ++ +EL +E K EE+ ++ + L
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898
Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK-KAIQKLEQRVRELENEL 519
EL ++ + + + LE +++ L++ L E E + + +LE+ + LE E+
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958
Query: 520 DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
+ + A + + E R +EL Q E+ + E++ +++++L ++ +
Sbjct: 959 EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008
Score = 67.8 bits (166), Expect = 1e-11
Identities = 72/331 (21%), Positives = 148/331 (44%), Gaps = 37/331 (11%)
Query: 283 IHEVEKARKRLEVEKD------ELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI 336
+ E+EK ++LE + + EL+A L E E AL + K LR +LE E ++ +
Sbjct: 195 LEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELE------ELEEEL 248
Query: 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAE 396
R +++L+++Q LEE ++ ++ + +L + LQ EL E ++ +E+ +
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308
Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
L + +L EL + + L+ EL+ + L+EL EE ++
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE------ 362
Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELE 516
+ L + LE + L+ L E E + ++ + EL+
Sbjct: 363 -----------LEEKLSALLEELEELFEALREELAELE--------AELAEIRNELEELK 403
Query: 517 NELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE 576
E++ + R + L + +KEL + EE + E + + +++L+++++ + +++
Sbjct: 404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463
Query: 577 EAEEIAALNLAKFRKAQQELEEAEERADLAE 607
E E A + ++ ++EL E R D E
Sbjct: 464 ELERELAELQEELQRLEKELSSLEARLDRLE 494
Score = 66.7 bits (163), Expect = 3e-11
Identities = 74/358 (20%), Positives = 154/358 (43%), Gaps = 25/358 (6%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN-AIANAAEKKAKAID 210
K + R EAE +E + + LE + L ++E L+ + ++A AE + +
Sbjct: 169 KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELA 228
Query: 211 KIIGEWKLK----------VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 260
++ + K + L EL+ Q+E E+ LK EE +E+LE ++
Sbjct: 229 LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQE 288
Query: 261 ENKNLADEVKDLL-------DQIGEGGRNIHEVEKARKRLEVEKDELQAALE-------E 306
E L +E+++L +++ E + E+E+ + L+ + + L+ LE E
Sbjct: 289 ELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348
Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366
E L + E + +LS E ++ + +++L +++ L E + ++ + ++
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
+E R L LE+ ++ L++ + + +TEL + +E+L EL Q + ++LE E
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468
Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIK 484
L L +L L E + E + + + + + + IK
Sbjct: 469 LAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIK 526
Score = 52.0 bits (125), Expect = 9e-07
Identities = 79/365 (21%), Positives = 160/365 (43%), Gaps = 24/365 (6%)
Query: 11 LKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN-AIANAAEKK 69
K K + + + E T E+L + LE + L ++E L+ + ++A AE +
Sbjct: 168 SKYKERKEEAERKLERTEENLER----LEDLLEELEKQLEKLERQAEKAERYQELKAELR 223
Query: 70 AKAIDKIIGEWKLK----VSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINT 125
+ ++ + K L+ E+ R +++ + +K I E LK L+ +
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEE--LKSELEELRE 281
Query: 126 LYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEV 185
L L K +L+ ++ E +E L ++ LE+ + L ++
Sbjct: 282 ELEELQEELLELKEE---------IEELEGEISLLRERLEELENELEELEERLEELKEKI 332
Query: 186 EDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK 245
E L+ E++ + E+ +++ E + K+ L EL+ + R EL L+
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE---ELAELE 389
Query: 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALE 305
E + +LE ++RE ++L + ++ L +++ + + E+E + L+ E +EL LE
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449
Query: 306 EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
E E LE+ +++ + EL++ E + +++ L+ LE EQRA R L
Sbjct: 450 ELEEQLEELRDRLKELERELAELQ-EELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
Query: 366 IVERR 370
+E
Sbjct: 509 ALESG 513
Score = 47.0 bits (112), Expect = 4e-05
Identities = 52/232 (22%), Positives = 106/232 (45%), Gaps = 12/232 (5%)
Query: 379 EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438
EE R+L+E+A G + + +A +L + +LE +L+ L ++
Sbjct: 155 EERRKLIEEAA-GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE 213
Query: 439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL 498
+ E + + A L +L+ + + E+ LE +++ELQ L+EAE
Sbjct: 214 RYQELKAELREL---ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE---- 266
Query: 499 KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQ 558
K I++L+ + EL EL+ Q + ++ + + E I L + EE E ++
Sbjct: 267 ----KEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322
Query: 559 DLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAV 610
+ +++L++KI+ K ++EE E + + ++ EE EE+ + +
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374
Score = 43.5 bits (103), Expect = 4e-04
Identities = 52/252 (20%), Positives = 117/252 (46%), Gaps = 7/252 (2%)
Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
Q++ K LE ++ EL+ +L++ E LK K ++ LE + EL +L+ +R+ + ++
Sbjct: 665 QKRELKELEEELAELEAQLEKLEE-ELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723
Query: 532 NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK 591
L E +++L + EE + E +++ +++LQ++++ + ++E EE A + +
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783
Query: 592 AQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLK-----LVCSVTFCRQITVQITSK 646
+++ + +E + E+ + + + ++ R L+ L + + ++ K
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
Query: 647 LVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDH 706
L L EE E + + L+ ++A E E K++LE ++ ELE L
Sbjct: 844 LDE-LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
Query: 707 ANKVRVAAISRK 718
+ R
Sbjct: 903 LKEEIEKLRERL 914
Score = 41.6 bits (98), Expect = 0.002
Identities = 52/264 (19%), Positives = 123/264 (46%), Gaps = 10/264 (3%)
Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
EL+ ++ E + LE ++K L+ L E+ L+ ++ +++LE+++ EL+ EL
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL-LEELRRQLEELERQLEELKRELA 726
Query: 521 GEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
+ Q L + E ++EL + EE ++ E +++ ++ L++ + K +IEE EE
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786
Query: 581 IAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQIT 640
+ + ++ELEEAE R D E+ + + + + + L+ +
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE------IEEL 840
Query: 641 VQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKK---KLEADI 697
+ +L L LE+E E ++ + + + + + E +++ +LE+++
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Query: 698 NELEIALDHANKVRVAAISRKKYV 721
EL+ ++ + ++ + +
Sbjct: 901 AELKEEIEKLRERLEELEAKLERL 924
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 79.3 bits (196), Expect = 4e-15
Identities = 84/372 (22%), Positives = 164/372 (44%), Gaps = 46/372 (12%)
Query: 231 QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR 290
++E ++ L+ E ++ L +R+E + L +E++ L ++ E R I + K
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
Query: 291 KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
RLE E ++L+ + + L + E ++ + L +A E + + ++++++ +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE----LAEAEAEIEELEAQI 791
Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
E+ + RE L + L E R+ LE +R E L D EQ+ ELS
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
Query: 411 AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
S++A +LE ++ L S+L+ LLNE + EE + L++ELR +
Sbjct: 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
Query: 471 TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ 530
+ + L ++ +L++RL+ E I L++R+ E
Sbjct: 912 ELRRELEELREKLAQLELRLEGLEVR--------IDNLQERLSE---------------- 947
Query: 531 KNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFR 590
E S EE +++D ++ ++++K + +I +E+ +NLA
Sbjct: 948 -----------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKI---KELGPVNLA--- 990
Query: 591 KAQQELEEAEER 602
A +E EE +ER
Sbjct: 991 -AIEEYEELKER 1001
Score = 77.8 bits (192), Expect = 1e-14
Identities = 67/333 (20%), Positives = 143/333 (42%), Gaps = 20/333 (6%)
Query: 282 NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQ 341
+I E + + LE + +EL+ + E E AL + ++ + EL Q E ++ ++
Sbjct: 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
Query: 342 QLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD 401
KD+ E ++ + + + L+ E+EE + LE+A+ +AE E+ +
Sbjct: 731 LRKDLARLEAEVEQLEERIAQL----SKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
Query: 402 AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE 461
Q+ +L + ++ A +L EL L+ + L ++ E + L ++
Sbjct: 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
Query: 462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDG 521
+ + ++ + LE I+EL+ L+ N LE+ + L +EL+
Sbjct: 847 IEELSEDIESLAAEIEELEELIEELESELEALLN--------ERASLEEALALLRSELE- 897
Query: 522 EQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEI 581
+ + LR+ E + EL + EE R+ +++ ++ L+ +I + ++ E +
Sbjct: 898 ------ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
Query: 582 AA-LNLAKFRKAQQELEEAEERADLAEQAVSKI 613
A K + + EEA R E + ++
Sbjct: 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
Score = 77.8 bits (192), Expect = 1e-14
Identities = 61/304 (20%), Positives = 128/304 (42%), Gaps = 11/304 (3%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
+L+ ++ E EE I L + + L K + L E+E L+ E++ + +A K ++
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEA-------QEQLEAVRRENK 263
+ + + ++ L+ EL + E L + EA + Q+E ++ E K
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL 323
L + + +L ++ + + + LE + LE+ E +E+ +
Sbjct: 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
Query: 324 ELSQAN---AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE 380
E+ + E + ++ + ++ AL + ++ E+L +E + + L+ ELEE
Sbjct: 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
Query: 381 SRQLLEQADRGRRQAETELADAHEQLNEL-SAQATSISAAKRKLEGELQTLHSDLDELLN 439
R+ L Q + E + + E+L+E S A + K+E + + L L N
Sbjct: 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
Query: 440 EAKN 443
+ K
Sbjct: 980 KIKE 983
Score = 69.3 bits (170), Expect = 5e-12
Identities = 116/646 (17%), Positives = 246/646 (38%), Gaps = 81/646 (12%)
Query: 6 DQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANA 65
+L LAE EE +E L E+E L+ E++ A
Sbjct: 324 QLEELESKLDELAEELAELEEKLEE--------------LKEELESLEAELEELEAELEE 369
Query: 66 AEKKAKAIDKIIGEWKLKV-SLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFIN 124
E + + +++ + + KV L+L++ N E + + ++ +
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ--------- 420
Query: 125 TLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATE 184
E ++LQA L E EE +E L +++ LE+ + L E
Sbjct: 421 -----------QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
Query: 185 VEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYST--ELF 242
+E+ + +D A + + +++++ + + + A L EL
Sbjct: 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI 529
Query: 243 RLKGAYEEA-----QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK 297
+ YE A +L+AV EN N A + L Q G ++ +
Sbjct: 530 SVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT----- 584
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL---KDVQTALEEEQ 354
++ + + + L +L + + + +K + + D+ AL E
Sbjct: 585 -----EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL--EL 637
Query: 355 RARDDAREQL----------------GIVERRANAL--QNELEESRQLLEQADRGRRQAE 396
+ ++ G + ++ L + E+EE + +E+ + + E
Sbjct: 638 AKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
LA+ ++L EL + + +L ++ L DL L E + EE+ + +
Sbjct: 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN------ALKGGKKAIQKLEQ 510
L E+ ++ + E+ E +I+EL+ ++++ + AL + + L +
Sbjct: 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
Query: 511 RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT 570
L L+ +RR A ++ L E +I+ELS E E +++L+++L+ +++
Sbjct: 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
Query: 571 YKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
+ EE AL ++ + +EL E E + + + ++R K
Sbjct: 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
Score = 63.9 bits (156), Expect = 2e-10
Identities = 105/503 (20%), Positives = 206/503 (40%), Gaps = 54/503 (10%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
+L+ + E ++ + +L ++ LE+ KQ L + +L+ +++ A E K +
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
+ + E + K+++L EL++ + E EL L+ EE +EQLE +R + L ++
Sbjct: 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
L ++I + +E R+RL+ E +EL LEEAE Q E + L +LE
Sbjct: 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE----- 450
Query: 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
E Q+ ++R ++ L++++ LEE ++A D A +L + A + LE ++ LE
Sbjct: 451 -ELQEELERLEEALEELREELEEAEQALDAAEREL----AQLQARLDSLERLQENLEGFS 505
Query: 390 RGRRQAETELADAHEQLNELSAQ-------ATSISAAKRKLEGELQTLHSDLDELLNEAK 442
G + + L LS +I AA L G LQ + + +A
Sbjct: 506 EGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRLQAVVVENLNAAKKAI 562
Query: 443 NSEEKAKKA-------------------MVDAARLADELRAEQDHAQTQEKLRKALE--- 480
++ + + L +D + KLRKAL
Sbjct: 563 AFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622
Query: 481 ---------TQIKELQIRLDEAENNALKGGKKAIQK--LEQRVRELENELDGEQRRHADA 529
EL +L G + + + + +R +
Sbjct: 623 GGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEEL 682
Query: 530 QKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF 589
++ + + E +I EL E RK E +++ +++L+++++ RQI + A A+
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
Query: 590 RKAQQELEEAE-ERADLAEQAVS 611
+ ++ + + E +L +
Sbjct: 743 EQLEERIAQLSKELTELEAEIEE 765
Score = 59.3 bits (144), Expect = 6e-09
Identities = 66/329 (20%), Positives = 148/329 (44%), Gaps = 18/329 (5%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIH-EVEKARKRLEVEKDELQAALEEA 307
+E + +LE R +NL D ++D+L+++ +++ + EKA + E++ + + L
Sbjct: 175 KETERKLERTR---ENL-DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALL 230
Query: 308 EAALEQEENKVLRAQLELSQAN---AEAQKNIKRYQQQLKD-------VQTALEEEQRAR 357
LE+ ++ Q EL +A E ++ +++L++ ++ +EE Q+
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
++ +E++ L+ L + LE+ + + E++L + E+L EL + +
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK 477
LE EL+ L ++L+EL + + EE+ + +++A E+L
Sbjct: 351 EELESLEAELEELEAELEELESRLEELEEQLETL---RSKVAQLELQIASLNNEIERLEA 407
Query: 478 ALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTE 537
LE + E E K + +++L+ + ELE EL+ Q ++ L +
Sbjct: 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
Query: 538 RRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
++E + + ++Q +D L++
Sbjct: 468 EELEEAEQALDAAERELAQLQARLDSLER 496
Score = 46.2 bits (110), Expect = 6e-05
Identities = 123/705 (17%), Positives = 275/705 (39%), Gaps = 66/705 (9%)
Query: 19 ARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIG 78
RL E E +E L +++ E+ + L E+++L+ +++ + E++ + + K +
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
Query: 79 EWKLKVS-LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNE 137
++S L+ + E++ + ++ + E + K
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL---------------A 336
Query: 138 KSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197
+ L +L+ +L E +E +ESL ++ LE + L + +E+L+ +++ +
Sbjct: 337 EELA----------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
Query: 198 IANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFR-----LKGAYEEAQ 252
E + +++ I + +++ L + Q+E +L L+ EE +
Sbjct: 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
Query: 253 EQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALE 312
E+LE ++ E + L + +++L +++ E + + E+ +L+ D L+ L+E
Sbjct: 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-LQENLEGFS 505
Query: 313 QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
+ +L+ Q LS + I + ++ AL R + E L ++
Sbjct: 506 EGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGG--RLQAVVVENLNAAKKAIA 563
Query: 373 ALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS 432
L+ L + + + + + A + KL L L
Sbjct: 564 FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG 623
Query: 433 ------DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL 486
DLD L AK + +D + A+T +I+EL
Sbjct: 624 GVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKT-NSSILERRREIEEL 682
Query: 487 QIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ 546
+ +++E E + +KA+ +L + + ELE EL +K L + R+I L
Sbjct: 683 EEKIEELEEKIAEL-EKALAELRKELEELEEEL-------EQLRKELEELSRQISALRKD 734
Query: 547 AEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLA 606
E++++ + +L +++ + +IEE EE + +A+ E+EE E + +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
Query: 607 EQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQ 666
++ + +R + + + + ++ +L E E +
Sbjct: 795 KEELKALREALDEL-----------------RAELTLLNEEAANLRERLESLERRIAATE 837
Query: 667 RALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVR 711
R L+ ++ +E ++ ++LE I ELE L+ R
Sbjct: 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
Score = 42.7 bits (101), Expect = 6e-04
Identities = 37/249 (14%), Positives = 94/249 (37%), Gaps = 31/249 (12%)
Query: 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVREL 515
L +++ + K + LE ++++L+ L+E + +K + +LE V +L
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR-QISALRKDLARLEAEVEQL 745
Query: 516 ENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQI 575
E + + + + + + E R++E + E E ++ +++L++++K + +
Sbjct: 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
Query: 576 EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTF 635
+E L + ++ LE E R E+ +
Sbjct: 806 DELRAELTLLNEEAANLRERLESLERRIAATERRL------------------------- 840
Query: 636 CRQITVQITSKLVLHLFLLEEEFENTRKN---HQRALDSMQASLEAEAKGKAEALRMKKK 692
+ + +L + L E E + + L+++ + + A ++
Sbjct: 841 --EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
Query: 693 LEADINELE 701
L ++ ELE
Sbjct: 899 LSEELRELE 907
Score = 30.0 bits (68), Expect = 5.4
Identities = 57/285 (20%), Positives = 120/285 (42%), Gaps = 26/285 (9%)
Query: 3 EQIDQLNKLKTKR-KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 61
E ++ +L+ + + + LAEAE IE L ++ L++ + L +++L+ E+ N
Sbjct: 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
Query: 62 IANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLD 121
A ++ +++++ I + R + E+ ++ I+ + E ++ +
Sbjct: 818 EAANLRERLESLERRIAATE---------RRLEDLEEQIEELSEDIESLAAE--IEELEE 866
Query: 122 FINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRL 181
I L L LNE++ L L++ L E E + L K L + + L
Sbjct: 867 LIEELESEL-EALLNERA-----SLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
Query: 182 ATEVEDLQLEVDRANA-IANAAEK---KAKAIDKIIGEWKLKVDDLAAELDASQKECRNY 237
++ L+L ++ I N E+ + + + K++D E K N
Sbjct: 921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Query: 238 STELFRLKGA----YEEAQEQLEAVRRENKNLADEVKDLLDQIGE 278
EL + A YEE +E+ + + + ++L + + L + I E
Sbjct: 981 IKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 69.6 bits (171), Expect = 5e-12
Identities = 64/341 (18%), Positives = 132/341 (38%), Gaps = 39/341 (11%)
Query: 240 ELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR------KRL 293
EL+ + Q +L + RE L + DL +++ V+ A +R
Sbjct: 294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERY 353
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
+ + +EL+ LEE +E+ + + + A E + + QL D Q AL+ +
Sbjct: 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE----VDELKSQLADYQQALDVQ 409
Query: 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQA 413
Q RA Q + Q LE+A + + +A + L E A+
Sbjct: 410 Q--------------TRAIQYQQAV----QALERAKQLCGLPDLTADNAEDWLEEFQAKE 451
Query: 414 TSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQE 473
+ LE + L+ A+ + + ++A ++A E+ + +E
Sbjct: 452 QEATEELLSLEQK-----------LSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARE 500
Query: 474 KLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNL 533
LR+ E + Q++ + L+ + Q+ E+ + E L + ++
Sbjct: 501 LLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQ 560
Query: 534 RKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 574
+ E R++ LS E R+ ++ +++LQ +I+ +
Sbjct: 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
Score = 48.4 bits (116), Expect = 1e-05
Identities = 68/302 (22%), Positives = 114/302 (37%), Gaps = 34/302 (11%)
Query: 222 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGR 281
D AEL + L + ++ + QLE K + LL ++
Sbjct: 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQA----KEGLSALNRLLPRL----- 884
Query: 282 NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE-LSQANAEAQKNIKRYQ 340
N+ E R+E +++L A EEA+ ++Q N + AQLE + + ++ +
Sbjct: 885 NLLADETLADRVEEIREQLDEA-EEAKRFVQQHGNAL--AQLEPIVSVLQSDPEQFEQLK 941
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRA-----NALQNELEESRQLLEQADRGRRQA 395
Q D Q A + ++ A+ A +V+RRA +A L ++ L E+ + QA
Sbjct: 942 Q---DYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDA-AEMLAKNSDLNEKLRQRLEQA 997
Query: 396 ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKN-----SEEKAKK 450
E E A EQL + AQ + L+ L EL E ++ ++
Sbjct: 998 EQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEER 1057
Query: 451 AMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQ 510
A L L A + R LE Q+ + +D K + + EQ
Sbjct: 1058 ARARRDELHARLSANRSR-------RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQ 1110
Query: 511 RV 512
V
Sbjct: 1111 VV 1112
Score = 38.8 bits (91), Expect = 0.013
Identities = 76/417 (18%), Positives = 148/417 (35%), Gaps = 118/417 (28%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLK 344
++ + RL EL A L EAE+ LEQ+ L L Q Q+ I+RYQ L+
Sbjct: 301 QLAAEQYRLVEMAREL-AELNEAESDLEQDYQ-AASDHLNLVQTALRQQEKIERYQADLE 358
Query: 345 DVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHE 404
+++ LEE+ ++A EQ E RA A + E++E + ++LAD +
Sbjct: 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK--------------SQLADYQQ 404
Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
L+ +A A + L E+AK+ AD
Sbjct: 405 ALDVQQTRAIQYQQAVQAL----------------------ERAKQLCGLPDLTADNAED 442
Query: 465 EQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR 524
+ Q +E+ ++ L+ +L A+ ++ Q VR++ E+
Sbjct: 443 WLEEFQAKEQ---EATEELLSLEQKLSVAQA-----AHSQFEQAYQLVRKIAGEVSRS-- 492
Query: 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 584
+A R+ RR++E AE+ + +L+ ++ ++++ +
Sbjct: 493 ---EAWDVARELLRRLREQRHLAEQ-----------LQQLRMRLSELEQRLRQQ------ 532
Query: 585 NLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQIT 644
++A++ L E +R
Sbjct: 533 -----QRAERLLAEFCKRLGKNLDD----------------------------------- 552
Query: 645 SKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELE 701
E+E E ++ + L+S+ S+ + + + ++L+A I L
Sbjct: 553 ----------EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
Score = 38.8 bits (91), Expect = 0.013
Identities = 62/305 (20%), Positives = 107/305 (35%), Gaps = 46/305 (15%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL---------K 344
E E +L E E AL E++ + + +L QA E + R +L
Sbjct: 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAK-EGLSALNRLLPRLNLLADETLAD 894
Query: 345 DVQTALEEEQRARDDAR------EQLGIVERRANALQNELEESRQLLEQADRGRRQAETE 398
V+ E+ A + R L +E + LQ++ E+ QL + QA+
Sbjct: 895 RVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQ----QAQQT 950
Query: 399 LADAHEQLNELS-----AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMV 453
DA +Q L+ S A L SDL+E L ++ ++A
Sbjct: 951 QRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKN-----SDLNEKL------RQRLEQAEQ 999
Query: 454 DAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVR 513
+ R ++LR Q ++ +L++ + L E + G A E+R R
Sbjct: 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERAR 1059
Query: 514 ELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKR 573
+EL L R +L Q + + + KL++ +
Sbjct: 1060 ARRDEL----------HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
Query: 574 QIEEA 578
Q+ A
Sbjct: 1110 QVVNA 1114
Score = 36.5 bits (85), Expect = 0.070
Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 40/301 (13%)
Query: 340 QQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETE- 398
+++L + L EQ + +L + + L+ + + + L RQ E
Sbjct: 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIE 351
Query: 399 -------------------LADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL-- 437
+ +A EQ E A+A + +L+ +L LD
Sbjct: 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT 411
Query: 438 ----LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493
+A + E+AK+ AD + Q +E + ++ L+ +L A
Sbjct: 412 RAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKE---QEATEELLSLEQKLSVA 468
Query: 494 ENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKN 553
+ ++ Q VR++ E+ +A R+ RR++E AE+ ++
Sbjct: 469 QA-----AHSQFEQAYQLVRKIAGEVSRS-----EAWDVARELLRRLREQRHLAEQLQQL 518
Query: 554 HERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKI 613
R+ +L +L+Q+ + +R + E + NL + +Q EE E R + ++VS+
Sbjct: 519 RMRLSELEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEA 577
Query: 614 R 614
R
Sbjct: 578 R 578
Score = 35.3 bits (82), Expect = 0.14
Identities = 60/308 (19%), Positives = 123/308 (39%), Gaps = 27/308 (8%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQ---------LEVDRANAI---- 198
+L+ RL E E +E +++ E + EV++L+ L+V + AI
Sbjct: 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQ 418
Query: 199 ANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAV 258
A A ++AK + + +D E A ++E L + + A Q E
Sbjct: 419 AVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478
Query: 259 RRENKNLADEV---------KDLLDQIGEGGRNIHEVEKARKRL-EVEKD-ELQAALEEA 307
+ + +A EV ++LL ++ E ++++ R RL E+E+ Q E
Sbjct: 479 YQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERL 538
Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
A + K L + EL Q E + ++ + + + + ++ + + ++ +
Sbjct: 539 LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRL 598
Query: 368 ERRANALQNELEESRQLLEQ---ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE 424
RA A + +L EQ + + E+ EL+ + ++A K+ L+
Sbjct: 599 AARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALD 658
Query: 425 GELQTLHS 432
E++ L
Sbjct: 659 EEIERLSQ 666
Score = 34.5 bits (80), Expect = 0.26
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 507 KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
+L + + +L EQ R + + L + +L + + +Q + + Q+
Sbjct: 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-RQQE 348
Query: 567 KIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRT 615
KI+ Y+ +EE EE +A ++ EE E RA+ AE+ V ++++
Sbjct: 349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS 397
Score = 33.4 bits (77), Expect = 0.57
Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 32/225 (14%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLA----TEVEDLQLEVDRANAIANAAEKKAKA 208
L+ +A++T Q+ AL + QR A + ++ + N ++A+
Sbjct: 940 LKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQ 999
Query: 209 IDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADE 268
+ +L +Q + Y+ L LK +Y+ ++ L+ +++E
Sbjct: 1000 ----------ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQE------- 1042
Query: 269 VKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQA 328
L +G + A +R +DEL A L + Q E ++ + E+
Sbjct: 1043 ----LQDLG-----VPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNL 1093
Query: 329 NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANA 373
+ +K + Y + + V A ++ VERR +
Sbjct: 1094 TKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKD--NGVERRLHR 1136
Score = 32.6 bits (75), Expect = 1.0
Identities = 48/257 (18%), Positives = 102/257 (39%), Gaps = 37/257 (14%)
Query: 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKK 450
GR E + + EL+ + ++S +KL+ Q + L A ++ +A+
Sbjct: 780 GRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAEL 839
Query: 451 AMVDAAR------LADELRAEQDHAQTQEKLRKA------------------LETQIKEL 486
++ R LAD EQ E+ ++ L +++E+
Sbjct: 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEI 899
Query: 487 QIRLDEAENNA--LKGGKKAIQKLEQRV---RELENELDGEQRRHADAQKNLRKTERRIK 541
+ +LDEAE ++ A+ +LE V + + + ++ + AQ+ R +++
Sbjct: 900 REQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAF 959
Query: 542 ELS--------FQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQ 593
L+ F E+ + + DL +KL+Q+++ +++ A E A+ +
Sbjct: 960 ALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYN 1019
Query: 594 QELEEAEERADLAEQAV 610
Q L + D Q +
Sbjct: 1020 QVLASLKSSYDAKRQML 1036
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 68.2 bits (166), Expect = 1e-11
Identities = 94/464 (20%), Positives = 217/464 (46%), Gaps = 18/464 (3%)
Query: 159 EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL 218
+A+E ++ +K K K A + ++ + + + A A+AA+KKA+ K K
Sbjct: 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
Query: 219 KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR--ENKNLADEVKDLLDQI 276
+ + A E +A++++ + K + A+++ E ++ E K A+E K D++
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
Query: 277 GEGGRNIHEVEKARKRLEVEK--DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK 334
+ + ++A+K+ E +K DE + EEA+ A E ++ + E ++ AE K
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
Query: 335 NIKRYQQQLKDVQTA------LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
+++ ++ + A EE ++ D+A++ ++ A + E + ++A
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
Query: 389 DRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKA 448
+ ++ E + A+ ++ +EL A ++K E + D + L +A+ +++
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
Query: 449 KKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKL 508
+ + + +L +E + + E+ +KA E +IK +++ E E ++ KK +
Sbjct: 1591 EARIEEVMKLYEEEKKMK-----AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Query: 509 EQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHE---RMQDLVDKLQ 565
+++ EL+ + + + A+ K + +++ +E E+++K E + + K +
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
Query: 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
+ K + ++AEE+ KA++ +EAEE AE+A
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
Score = 61.3 bits (148), Expect = 2e-09
Identities = 100/475 (21%), Positives = 220/475 (46%), Gaps = 26/475 (5%)
Query: 159 EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL 218
EA++ E +K A +K + E + E + A A AAE+KA+A +K E K
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Query: 219 KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR--ENKNLADEVKDLLDQI 276
K D + + +K K EE +++ + +++ K ADE K ++
Sbjct: 1379 KADAAKKKAEEKKKA--------DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430
Query: 277 GEGGRNIHEVEKARKRLEVEK--DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK 334
+ + E+A+K E +K +E + A E + A E ++ + + E ++ EA+K
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Query: 335 NIKRYQQQLKDVQTALEEEQRARD--DAREQLGIVERRANALQNELEESRQLLE--QADR 390
+ +++ + + A E +++A + A E E + + +E+++ E +AD
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
Query: 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLN----EAKNSEE 446
++ E + A+ ++ E + A RK E + + ++E++ E K E
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
Query: 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL-QIRLDEAENNALKGGKKAI 505
+AKKA +A A+EL+ ++ + E+L+K + K+ +++ E EN +
Sbjct: 1611 EAKKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
+ +++ E + + ++++ A+A K + ++ +EL + E++K E ++ ++ +
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Query: 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
K + K++ EE ++ A + +K ++E ++ E+ +IR + +V
Sbjct: 1730 IKAEEAKKEAEEDKKKA----EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
Score = 56.3 bits (135), Expect = 5e-08
Identities = 97/492 (19%), Positives = 203/492 (41%), Gaps = 41/492 (8%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
E+A++ A + E + A+E + D + E +K E +KD EEA+
Sbjct: 1197 EDARKAEAARKAEEERKAEEARKAEDA--------KKAEAVKKAEEAKKDA-----EEAK 1243
Query: 309 AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVE 368
A E+ N+ +R E A+ ++ + ++ K + EE++ D+A++
Sbjct: 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK-- 1301
Query: 369 RRANALQNELEESR---QLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEG 425
++A+ + + EE++ + ++A+ +++A+ A E A AA + E
Sbjct: 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
Query: 426 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR--AEQDHAQTQEKLRKALETQI 483
+ + + K ++ KKA + + ADE + AE+D + E + A +
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKA--EEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Query: 484 KELQIRLDEAENNALKGGKKAIQ---------KLEQRVRELENELDGEQRRHADAQKNLR 534
+ + E + A + KKA + K E+ + E + E+ + AD K
Sbjct: 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
Query: 535 KTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQ 594
+ ++ E +AEE +K + + + +K ++ EEA++ A+ K
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAE--AKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
Query: 595 ELEEAEE--------RADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSK 646
E ++AEE +A+ ++A K + + A + L + + +I
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
Query: 647 LVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDH 706
+ L+ + + E +K + + + + E K K E L+ K+ E E +
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Query: 707 ANKVRVAAISRK 718
NK++ A ++K
Sbjct: 1658 ENKIKAAEEAKK 1669
Score = 56.3 bits (135), Expect = 6e-08
Identities = 115/550 (20%), Positives = 229/550 (41%), Gaps = 54/550 (9%)
Query: 3 EQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAI 62
E+ + ++ K K + + EA++ E +K A +K + E + E + A
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Query: 63 ANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDF 122
A AAE+KA+A +K E K K + A+ A+KKA+ K E K +
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA--- 1415
Query: 123 INTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLA 182
++K +AEE ++ K A E K A
Sbjct: 1416 --------------------------AKKKADEAKKKAEEKKKADEAKKKAEEAKK---A 1446
Query: 183 TEVEDLQLEVDRANAIANAAEKKAKAID-KIIGEWKLKVDDLAAELDASQKECRNYSTEL 241
E + E +A AE+ KA + K E K D+ + + ++K+
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD------ 1500
Query: 242 FRLKGAYEEAQEQLEAVRRENKNLADEVKDLLD-QIGEGGRNIHEVEKA---RKRLEVEK 297
K A E ++ EA + E ADE K + + + + E +KA +K E++K
Sbjct: 1501 -EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
Query: 298 DELQAALEEAEAALEQEENKVLRAQL--ELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
E + EEA+ A E + + +A+ + +A E + ++++K + EE +
Sbjct: 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
Query: 356 ARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS 415
+ + ++ +++ L+ + E ++ E+ ++AE E + + + +
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL----KKAEEENKIKAAEEAKKAEEDKK 1675
Query: 416 ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQD--HAQTQE 473
+ +K E + + L + EAK +EE KK + + A+EL+ ++ + +E
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEE-LKKKEAEEKKKAEELKKAEEENKIKAEE 1734
Query: 474 KLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNL 533
++A E + K + + DE E + KK +K + +R+ + + E+ D +K
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED-EKRR 1793
Query: 534 RKTERRIKEL 543
+ +++IK++
Sbjct: 1794 MEVDKKIKDI 1803
Score = 51.3 bits (122), Expect = 2e-06
Identities = 78/377 (20%), Positives = 155/377 (41%), Gaps = 19/377 (5%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
EEA++ +A R E A++ + + + + E ARK EV K E E+A
Sbjct: 1143 EEARKAEDAKRVEIARKAEDARKA--EEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200
Query: 309 AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVE 368
A + + R E +A + + +K + A ++ + A+ E+
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDA------KKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
Query: 369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQ 428
R+ + RQ +A+ R+ E + A+ ++ +E A + K + E
Sbjct: 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
Query: 429 TLHSDLDELLNEAKNSEEKAKKAMVDAARLAD----ELRAEQDHAQTQEKLRKALETQIK 484
+ + EAK + AKK +A + A+ E A D A+ E+ +A E + +
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 485 ELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD-----GEQRRHADAQKNLRKTERR 539
E + + D A+ A + KK + +++ E + + D ++ AD K + +++
Sbjct: 1375 EAKKKADAAKKKAEE--KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Query: 540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEA 599
E +AEE +K E + + + + K + + + A + +KA + ++A
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
Query: 600 EERADLAEQAVSKIRTK 616
EE A++A K
Sbjct: 1493 EEAKKKADEAKKAAEAK 1509
Score = 45.9 bits (108), Expect = 9e-05
Identities = 85/435 (19%), Positives = 178/435 (40%), Gaps = 12/435 (2%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
+ A AEA E +K K K A + + + + D A A +KKA + K
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
Query: 212 IIGEWKLKVDDLAAELDASQK--ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
K K D+ + + +K E + + E + A ++A+E +A + K +
Sbjct: 1413 AAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
D + E + E +K + + + DE + A E + A E ++ + + E +A
Sbjct: 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
Query: 330 -AEAQKNIKRYQQQLKDVQTALEEEQRARDDAR--EQLGIVERRANALQNELEESRQLLE 386
A+ K+ +++ K + EE + ++ + E+ E N + EE+++ E
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Query: 387 QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEE 446
+ E + + + +A + +K E E + + + E K +EE
Sbjct: 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
Query: 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQ 506
K + + A+E + ++ + E+ +KA E + K + EAE K ++ +
Sbjct: 1652 LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKK 1709
Query: 507 KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
K + ++ E E+ A++ ++ E K +AEE +K+ E + + ++
Sbjct: 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK----KAEEAKKDEEEKKKIAHLKKE 1765
Query: 567 KIKTYKRQIEEAEEI 581
+ K + +E E +
Sbjct: 1766 EEKKAEEIRKEKEAV 1780
Score = 40.1 bits (93), Expect = 0.004
Identities = 62/325 (19%), Positives = 137/325 (42%), Gaps = 25/325 (7%)
Query: 297 KDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK---NIKRYQQQLKDVQTALEEE 353
+D E +E K + E ++ EA+K + ++ ++ K EE
Sbjct: 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE 1144
Query: 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQA 413
R +DA+ ++ I + +A + E + ++A+ R+ E A+ + + A
Sbjct: 1145 ARKAEDAK-RVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAED----A 1199
Query: 414 TSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQE 473
AA++ E + EA+ +E+ K +A + A+E + + + A+ E
Sbjct: 1200 RKAEAARKAEE----------ERKAEEARKAEDAKK---AEAVKKAEEAKKDAEEAKKAE 1246
Query: 474 KLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQR----VRELENELDGEQRRHADA 529
+ R E + E A A ++A + E + ++ + E+++ AD
Sbjct: 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE 1306
Query: 530 QKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF 589
K + ++ E +AEE +K + + ++ ++ + K + E A + A K
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
Query: 590 RKAQQELEEAEERADLAEQAVSKIR 614
A+++ EEA+++AD A++ + +
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKK 1391
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 67.8 bits (166), Expect = 1e-11
Identities = 92/423 (21%), Positives = 190/423 (44%), Gaps = 24/423 (5%)
Query: 200 NAAEKKAKAIDKIIGEWKLKVDDLAAELDASQ---KECRNYSTELFRLKGAYEEAQEQLE 256
N E + +D+ I ++ + + D + +E EL L+ E+ +E +
Sbjct: 209 NGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA 268
Query: 257 AVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEEN 316
RE + LA+EV+DL +++ E ++ + + + ++A EE E E+ +
Sbjct: 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
Query: 317 KVLRAQLELSQANAEAQ---KNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANA 373
++ ++ N EA+ ++ +++ ++++ E + ++ARE +
Sbjct: 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEE 388
Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
L+ E+EE R+ A AE L + E+ +EL + + A R ++ +
Sbjct: 389 LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE----E 444
Query: 434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493
+ LL K E V+ + + + +++ + E + LE +++E++ RL+ A
Sbjct: 445 AEALLEAGKCPECGQP---VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
Query: 494 ENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER-RIKELSFQAEEDRK 552
E L + I++LE+R RE EL E+R + ++ + R R EL +AEE R+
Sbjct: 502 E--DLVEAEDRIERLEER-REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558
Query: 553 NHERMQDLVDKLQQKIKTYKRQIEE-AEEIAALN-----LAKFRKAQQELEE-AEERADL 605
++ ++ ++++ ++ E E I +L LA A+ E+E E+R L
Sbjct: 559 AAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL 618
Query: 606 AEQ 608
AE
Sbjct: 619 AEL 621
Score = 63.1 bits (154), Expect = 3e-10
Identities = 94/482 (19%), Positives = 209/482 (43%), Gaps = 35/482 (7%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLA----------TEVEDLQLEVDRANAIANAA 202
L++ LAE +E IE ++ +T+ E+E L+ E++
Sbjct: 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET 270
Query: 203 EKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRREN 262
E++ + + + + + + ++++L E D E + ++ EE +++ E +R
Sbjct: 271 EREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330
Query: 263 KNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQ 322
+ + ++ + ++E+ + L E EL++ LEEA A+E ++
Sbjct: 331 EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIE--- 387
Query: 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESR 382
EL + E ++ L + + LEE + RD+ RE+ +E + +EE+
Sbjct: 388 -ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446
Query: 383 QLLE--------QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
LLE Q G ET + + E++ EL A+ + ++E L+ DL
Sbjct: 447 ALLEAGKCPECGQPVEGSPHVET-IEEDRERVEELEAELEDLEEEVEEVEERLERA-EDL 504
Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
E + + EE+ + A + + +++ A+ + LE + +E + EAE
Sbjct: 505 VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
Query: 495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
A + ++ + +L ++ EL+ ++ +R +R I + + E R+
Sbjct: 565 EEAEEA-REEVAELNSKLAELKERIESLER--------IRTLLAAIADAEDEIERLREKR 615
Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
E + +L D+ ++++ + + E E + A+ +A+++ E AEE + E+ + ++R
Sbjct: 616 EALAELNDERRERLAEKRERKRELEA--EFDEARIEEAREDKERAEEYLEQVEEKLDELR 673
Query: 615 TK 616
+
Sbjct: 674 EE 675
Score = 60.4 bits (147), Expect = 3e-09
Identities = 87/426 (20%), Positives = 183/426 (42%), Gaps = 48/426 (11%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
R +L+ R E + +E A + + L + +DL+ + A E + +
Sbjct: 316 REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA 375
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
+ + + + ++++L E++ ++ + +L + EE +E+ + +R L +
Sbjct: 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL 435
Query: 270 KDLLDQIGEGGRNIHE---------------VEKARKRLEVEKDELQAALEEAEAALEQE 314
+ +++ E + VE + +EL+A LE+ E +E+
Sbjct: 436 RTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED-RERVEELEAELEDLEEEVEEV 494
Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
E ++ RA + EA+ I+R +++ +D++ + E + ++ RE+ + RA L
Sbjct: 495 EERLERA-----EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549
Query: 375 QNELEESR----QLLEQADRGRR------QAETELADAHEQLNELSAQATSISAAKRKLE 424
+ E EE R + E+A+ R EL + E L + +I+ A+ ++E
Sbjct: 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIE 609
Query: 425 GELQTLHSDLDELLNE------AKNSEEKAKKAMVDAARL----ADELRAEQDHAQTQEK 474
L+ L EL +E K ++ +A D AR+ D+ RAE+ Q +EK
Sbjct: 610 -RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668
Query: 475 LRKALETQIKELQIRLDEAEN-----NALKGGKKAIQKLEQRVRELENELDGEQRRHADA 529
L L + +LQ + EN L+ ++A++ + + L +E + + + D
Sbjct: 669 LD-ELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESMYGDL 727
Query: 530 QKNLRK 535
+ LR+
Sbjct: 728 RAELRQ 733
Score = 55.8 bits (135), Expect = 6e-08
Identities = 94/414 (22%), Positives = 191/414 (46%), Gaps = 61/414 (14%)
Query: 245 KGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAAL 304
+G+ ++ + Q+E +E K+L + + L ++ E I E+ R++ +DE L
Sbjct: 186 RGSLDQLKAQIE--EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVL 243
Query: 305 EEAEAALEQEENKVLRAQLELSQAN-AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQ 363
EE E +EE + L A++E + AE ++ + ++++D++ LEE + RDD +
Sbjct: 244 EEHEE--RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE 301
Query: 364 LGI--------------VERRANALQNELEESR----QLLEQADRGRRQA---ETELADA 402
G+ +E R L++ LEE R E+A+ R A E +
Sbjct: 302 AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL 361
Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL 462
E+ EL ++ A E++ L +++EL ++ + +A +EL
Sbjct: 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV----DLGNAEDFLEEL 417
Query: 463 RAEQDHAQTQEKLRKALETQIKELQIRLDEAEN--------------------NALKGGK 502
R E+D + +E LE ++ + R++EAE ++ +
Sbjct: 418 REERDELREREA---ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDR 474
Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
+ +++LE + +LE E++ + R A ++L + E RI+ L + E +++L+
Sbjct: 475 ERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERL-------EERREDLEELIA 526
Query: 563 KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
+ ++ I+ + + EE E AA A+ + ++ EAEE A+ A + V+++ +K
Sbjct: 527 ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
Score = 41.2 bits (97), Expect = 0.002
Identities = 97/497 (19%), Positives = 191/497 (38%), Gaps = 68/497 (13%)
Query: 15 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 74
L+ +AE E E L ++V L + + L E +DL E +A A A E + + ++
Sbjct: 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320
Query: 75 KIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPF 134
E L+ L+ A A AE + D + +
Sbjct: 321 DRDEE--LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE--------------- 363
Query: 135 LNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 194
+L++ L EA E +E +++ LE+ + L D +++
Sbjct: 364 --------------EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409
Query: 195 ANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ 254
A +++L E D ++ L + EEA+
Sbjct: 410 AED---------------------FLEELREERDELREREAELEATLRTARERVEEAEAL 448
Query: 255 LEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQE 314
LEA + E ++ I E + E+E + LE E +E++ LE AE +E E
Sbjct: 449 LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508
Query: 315 ------ENKVLRAQLELSQANA---EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
E + + +++ E ++ + +++ +++ EE++ A +A E+
Sbjct: 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568
Query: 366 IVERRANALQNELEESRQLLEQADRGRRQAET--ELADAHEQLNELSAQATSISAAKRKL 423
L ++L E ++ +E +R R + D E+L E ++ +R+
Sbjct: 569 EAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRER 628
Query: 424 EGELQTLHSDLDELLN-----EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
E + +L+ + EA+ +E+A++ + DELR E+D Q + +
Sbjct: 629 LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688
Query: 479 LETQIKELQIRLDEAEN 495
+++EL+ R + EN
Sbjct: 689 ELEELEELRERREALEN 705
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 65.9 bits (161), Expect = 5e-11
Identities = 52/283 (18%), Positives = 124/283 (43%), Gaps = 10/283 (3%)
Query: 326 SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLL 385
S+A + +L+ ++ LE +R + +L +E R + L EL ++ + +
Sbjct: 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718
Query: 386 EQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE 445
+ ++ Q E E E+L EL +S+ ++ EL+ L + ++EL E +
Sbjct: 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL--EEDLHK 776
Query: 446 EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI 505
+ ++A + Q E+ +E +++E++ +L + +K I
Sbjct: 777 LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL-NRLTLEKEYLEKEI 835
Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH-------ERMQ 558
Q+L+++ +L+ ++ ++ + + E ++EL + + ++
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
Query: 559 DLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601
+ +L++KI+ + QIE+ + + AK ++EL E E+
Sbjct: 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
Score = 65.9 bits (161), Expect = 6e-11
Identities = 65/261 (24%), Positives = 124/261 (47%), Gaps = 15/261 (5%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQ-RLATEVEDLQLEVDRANAIANA-------AE 203
+L+ RL E E+ +E LN+K+ L + +Q R+ ++ +L+ E+ AE
Sbjct: 262 ELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
Query: 204 KKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK 263
++ ++ I + ++++L E++ +K + E LK E+ + +LE V +E
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL 323
DE+KD +++ + R I+E+++ RL+ E L L + AA+ E K
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK----IN 437
Query: 324 ELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE--- 380
EL + + IK+ + +L+ + L + ++ D +E+ VE+ + LQ EL E
Sbjct: 438 ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
Query: 381 SRQLLEQADRGRRQAETELAD 401
+ E+ RG R E L
Sbjct: 498 QARASEERVRGGRAVEEVLKA 518
Score = 63.5 bits (155), Expect = 3e-10
Identities = 84/355 (23%), Positives = 155/355 (43%), Gaps = 21/355 (5%)
Query: 148 FPRRKLQAR--LAEAEETIESLNQKVIALEKTKQRLATEVE------DLQLEVDRANAIA 199
F R+K +A L E EE IE L+ + + +RL E E L E
Sbjct: 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE 227
Query: 200 NAAEKKA-----KAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRL-KGAYEEAQE 253
EK+A +AI++ + + +++ L E+ +K L L K + +E
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287
Query: 254 QLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ 313
+ V+ + L E+ L I E R + + E+ +LE E D+L A +EE E +E+
Sbjct: 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347
Query: 314 EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANA 373
E + R +L A + + R +L++V E + D RE+L ++R N
Sbjct: 348 E--RKRRDKLTEEYAELKEELEDLR--AELEEVDKEFAETRDELKDYREKLEKLKREINE 403
Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
L+ EL+ ++ L++ +A ++NEL + + +K E +L+ L +D
Sbjct: 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
Query: 434 LDEL---LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKE 485
L + L + K ++ +K + R E A+ ++ + + +A+E +K
Sbjct: 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
Score = 63.2 bits (154), Expect = 4e-10
Identities = 70/351 (19%), Positives = 156/351 (44%), Gaps = 12/351 (3%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
R A L E +E L +++ +L+ +R+ +++L E+ A+ EK+ + ++
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729
Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
+ + K ++++L +L + ++E N +EL L+ EE +E L + +L E +
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EAR 787
Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANA 330
+I E + ++E+ R+E E++ L E E ++ EL +
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQEQRI 843
Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADR 390
+ ++ IK +++++++ EE + ++ L +E R L+ E +E L + +R
Sbjct: 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
Query: 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKK 450
+ E ++ ++L+EL A+ ++ ++E +E L+ E +
Sbjct: 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV 963
Query: 451 AMVDAARLADELRAEQDHAQTQEKL------RKALETQIKELQIRLDEAEN 495
A + A Q++ + ++L R LE + K + R++E E
Sbjct: 964 EEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
Score = 60.1 bits (146), Expect = 4e-09
Identities = 78/348 (22%), Positives = 145/348 (41%), Gaps = 21/348 (6%)
Query: 185 VEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDL------AAELDASQKECRNYS 238
V + + ++A E+ + +D II E + +++ L A A KE R Y
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY- 223
Query: 239 TELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL----- 293
E + L E + Q EA+ R+ +L +E++ L ++I E + + E+E+ + L
Sbjct: 224 -EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282
Query: 294 ---EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
E E+ ++ + E EA + E + + EL A K + L ++ L
Sbjct: 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI-EEL 341
Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
E E R++L L+ ELE+ R LE+ D+ + EL D E+L +L
Sbjct: 342 EREIEEERKRRDKL---TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
Query: 411 AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
+ + +L+ ELQ L +L +L E K + + A E++ ++ +
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
Query: 471 TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
E ++ +L+ D E L ++ + + E + R E
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKE-LSKLQRELAEAEAQARASEER 505
Score = 53.9 bits (130), Expect = 3e-07
Identities = 53/341 (15%), Positives = 143/341 (41%), Gaps = 14/341 (4%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK------NIKRYQQQLKDVQ-TAL 350
E E+A LE+ E + R L + + + ++ +RYQ LK+ +
Sbjct: 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225
Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL- 409
E + ++ Q +ER+ +L+ ELE+ + + + ++ + E L + ++++ +L
Sbjct: 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG 285
Query: 410 SAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHA 469
+ + +LE E+ +L + E E +++EE+ K + +L E+ +
Sbjct: 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345
Query: 470 QTQEKLRKALETQIKELQIRLD------EAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
+ + K R L + EL+ L+ E + + ++ +++ +L+ E++ +
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405
Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583
R Q+ L++ + +L+ +++ + +IK + ++E+ +
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
Query: 584 LNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGS 624
+ ++E + E+ ++ +++ + +
Sbjct: 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
Score = 51.2 bits (123), Expect = 2e-06
Identities = 41/220 (18%), Positives = 93/220 (42%), Gaps = 1/220 (0%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
+ RLA+ E I+ L ++ LE+ + + L E + + +D
Sbjct: 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
K E + ++ D +L+ ++E EL RL+ + E+L + + ++
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437
Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANA 330
+L ++ + I + E ++L + + + L + + ++ E ++ + Q EL++A A
Sbjct: 438 ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERR 370
+A+ + + + V+ L+ + QLG V R
Sbjct: 498 QARA-SEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGER 536
Score = 41.6 bits (98), Expect = 0.002
Identities = 70/400 (17%), Positives = 156/400 (39%), Gaps = 35/400 (8%)
Query: 13 TKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKA 72
R ++ L +++ L++ L +E+ ++ +D + + A +K
Sbjct: 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
Query: 73 IDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFI 132
I+K I + L+ E ++ E+ ++++ I +K L + I
Sbjct: 721 IEKEIEQ------LEQEEEKLKERLEELEEDLSSLEQEIEN--VKSELKELEAR-----I 767
Query: 133 PFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEV 192
L E K L +L + I + ++ LE+ R+ + +++ ++
Sbjct: 768 EELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
Query: 193 DRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQ 252
+R EK+ + + + + K ++ + E++ + EL EE +
Sbjct: 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL-------EELE 874
Query: 253 EQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALE 312
L + +L E +L Q+ E R I E+E ++ EL+A LE E
Sbjct: 875 AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE---- 930
Query: 313 QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
EE + + E + +++ Q +L+ V+ + + A ++ V +R +
Sbjct: 931 -EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD 989
Query: 373 ALQNEL----EESRQLLEQADRGRRQAETELADAHEQLNE 408
L+ + EE + +LE+ + ++ +A E +NE
Sbjct: 990 ELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINE 1029
Score = 37.4 bits (87), Expect = 0.031
Identities = 53/278 (19%), Positives = 107/278 (38%), Gaps = 20/278 (7%)
Query: 5 IDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIAN 64
+++LNK K K + +E I L ++ +LE++ E+ED + + + A +
Sbjct: 274 LEELNK-KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
Query: 65 AAEKKAKAIDKIIGEWKLKV-SLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFI 123
+ + +++ I E + + L E + + +DK E + + D+
Sbjct: 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK-DYR 391
Query: 124 NTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLAT 183
L EK + L +LQ L E + LN + +E L
Sbjct: 392 EKL----------EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
Query: 184 EVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFR 243
E ED LE+ E K + + + +++ ++ DL E D +KE EL
Sbjct: 442 EKEDKALEIK-------KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
Query: 244 LKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGR 281
+ ++E++ R + L ++ + + + G
Sbjct: 495 AEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
Score = 37.0 bits (86), Expect = 0.041
Identities = 47/267 (17%), Positives = 117/267 (43%), Gaps = 14/267 (5%)
Query: 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQ 506
+ ++ + EL+ ++ + ++ +L+++++ ++ RLDE + +
Sbjct: 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDEL--------SQELS 712
Query: 507 KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
+++ E+E E++ ++ ++ L + E + L + E + + ++ +++L++
Sbjct: 713 DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772
Query: 567 KIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSP 626
+ + + + E A L+ ++ + Q EL + EE E + +I K +
Sbjct: 773 DLHKLEEALNDLE--ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
Query: 627 L--KLVCSVTFCRQITVQITS--KLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKG 682
L ++ + QI S K + +L +EE E + + AL +++ L K
Sbjct: 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
Query: 683 KAEALRMKKKLEADINELEIALDHANK 709
+ E ++LE I ELE ++ K
Sbjct: 891 RDELEAQLRELERKIEELEAQIEKKRK 917
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 63.6 bits (155), Expect = 3e-10
Identities = 88/492 (17%), Positives = 215/492 (43%), Gaps = 28/492 (5%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
+ + E E+ IE+L +++ LE+ K+RL L E++ + ++
Sbjct: 221 IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELE 280
Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
+++ E + K++ L EL+ +E L L EE E+L+++ + L ++++
Sbjct: 281 RLLEELEEKIERLE-ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLE 339
Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANA 330
L ++ E +E+ K + E +E LE+ + ++ A EL + A
Sbjct: 340 KLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELA 399
Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD- 389
E ++ Q++L++++ LEE +R ++ E++ +E + N L+++ +L +
Sbjct: 400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK 459
Query: 390 -----RGRRQAETELADAH--------EQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
+ + + E+ + + +LE EL+ L +L E
Sbjct: 460 CPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIE 519
Query: 437 LLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
LL + +E+ ++ + L +EL ++ Q Q+ + + + + +++ E
Sbjct: 520 LLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELR 579
Query: 497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN------------LRKTERRIKELS 544
L+ K+ +++L +R++EL+ +L + R + ++ L + E ++
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639
Query: 545 FQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
+ + E +Q +++L++K++ + +I + N + + +ELE+ EE +
Sbjct: 640 EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQ-RIENEEQLEEKLEELEQLEEELE 698
Query: 605 LAEQAVSKIRTK 616
+ + ++ K
Sbjct: 699 QLREELEELLKK 710
Score = 55.5 bits (134), Expect = 8e-08
Identities = 100/467 (21%), Positives = 215/467 (46%), Gaps = 20/467 (4%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
L+A L E EE +E L LEK +++L +L+ + N +A E++ K +++
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368
Query: 212 IIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKD 271
+ E + +++ L ++ + EL L A EE QE+LE + +E + L E+++
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428
Query: 272 LLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE 331
L ++I + I+++E + L +E K L EL E
Sbjct: 429 LEEEIKKLEEQINQLESKELMIAELAGA-GEKCPVCGQELPEEHEKELLELYELELEELE 487
Query: 332 AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG-IVERRANALQNELEESRQLLEQADR 390
+ + ++ + +L++ LE+E R ++ +L + E L+ +LE+ LLE+ +
Sbjct: 488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEE 547
Query: 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKK 450
+ + + + + E Q + +L + +L E L E K ++ ++
Sbjct: 548 LKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607
Query: 451 AMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQ 510
+ L L + + +E + LE+++++L ++ + E + A+++LE+
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAE-EELESELEKLNLQAELEELL-----QAALEELEE 661
Query: 511 RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT 570
+V ELE E+ E +R + ++ L + +++L + E+ R+ +++L +K+
Sbjct: 662 KVEELEAEIRRELQR-IENEEQLEEKLEELEQLEEELEQLREE-------LEELLKKLGE 713
Query: 571 YKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKG 617
++ IEE E A+ + ++ELE+ E+ +L E+ K+ G
Sbjct: 714 IEQLIEELES----RKAELEELKKELEKLEKALELLEELREKLGKAG 756
Score = 55.2 bits (133), Expect = 1e-07
Identities = 118/591 (19%), Positives = 251/591 (42%), Gaps = 47/591 (7%)
Query: 10 KLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKK 69
K + + + E E+ IE+L +++ LE+ K+RL L E++
Sbjct: 216 KKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEE 275
Query: 70 AKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCL 129
+ +++++ E + K + + + +++ G L L+ +
Sbjct: 276 LRELERLLEELEEK---------IERLEELEREIEELEEELEGLRALLEELEELLEKLKS 326
Query: 130 LFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQ 189
L KL+ +E EE E N+ LE+ + L +E+L+
Sbjct: 327 LEERLEKL------------EEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELE 374
Query: 190 LEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE 249
E+++A E+ + + + + E ++++ EL+ +KE EL L+ +
Sbjct: 375 KELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434
Query: 250 EAQEQLEAVRRENKNLADEV----------KDLLDQIGEGGRNIHEVEKARKRLEVEKDE 299
+ +EQ+ + + +A+ ++L ++ + ++E+E E+ +++
Sbjct: 435 KLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREK 494
Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE--EQRAR 357
+A L E LE+E ++ +EL + ++ ++ ++L+++ LEE E+
Sbjct: 495 EEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQL 554
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
+E+L +E R L+ LEE R L + + EL + E+L EL + +
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKE--------ELEELRERLKELKKKLKELE 606
Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK 477
+LE LQ+L +L E NE + +EE+ + + A+ Q + E+ +
Sbjct: 607 ERLSQLEELLQSL--ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVE 664
Query: 478 ALETQIKELQIRLDEAEN--NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK 535
LE +I+ R++ E L+ ++ ++LEQ ELE EL + + L
Sbjct: 665 ELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE-ELLKKLGEIEQLIEELES 723
Query: 536 TERRIKELSFQAEEDRKNHERMQDLVDKLQQK-IKTYKRQIEEAEEIAALN 585
+ ++EL + E+ K E +++L +KL + ++ + A+ A N
Sbjct: 724 RKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEAN 774
Score = 44.8 bits (106), Expect = 2e-04
Identities = 48/277 (17%), Positives = 118/277 (42%), Gaps = 8/277 (2%)
Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
++E+ +L ++++ LE E L++ + +++ Q E ++ I+ +++L
Sbjct: 185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKL---EEIQEEQEEEELEQEIEALEERL 241
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
+++ E + + E + + EL E +LLE+ + + EL
Sbjct: 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEEL-EEKIERLEELEREI 300
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
E+L E ++ +L +L++L L++L + + E + ++ + LA L
Sbjct: 301 EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360
Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
+ + + + + E +L+EA K+ + +L + E++ EL+ +
Sbjct: 361 ERLKELEERLEELEKELEKALERLKQLEEAIQEL----KEELAELSAALEEIQEELEELE 416
Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL 560
+ + ++ L + E IK+L Q + + +L
Sbjct: 417 KELEELERELEELEEEIKKLEEQINQLESKELMIAEL 453
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 56.2 bits (136), Expect = 5e-08
Identities = 108/521 (20%), Positives = 225/521 (43%), Gaps = 68/521 (13%)
Query: 156 RLAEAEETIESLNQKVIALEKTKQRL---ATEVEDLQLEVDRANAIANAAEKKAKAIDKI 212
+ E + L +++ LEK + L E+E+L+ E++ E+K + +++
Sbjct: 208 EINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
Query: 213 IGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDL 272
I E K ++++L E KE + + E +L YEE ++L + + L +E+ +
Sbjct: 268 IEELKKEIEELE-EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEA 332
++I E +E+ +K+L+ + L+ E E EE K + +LE +
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLE---ELEERHELYEEAKAKKEELERLKKR-LT 382
Query: 333 QKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE----------SR 382
++ +++L++++ A EE + ++G +++ L+ +EE
Sbjct: 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
Query: 383 QLLEQADRGRRQAE--TELADAHEQLNELSAQATSISAAKRKLEGELQTLH--SDLDELL 438
+ L + R E EL ++L E+ + + R+LE L+ L EL
Sbjct: 443 RELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA 502
Query: 439 NEAKNSEEKAKKAMVDAA-----------RLADELRAEQ-------DHAQTQEKLRKALE 480
+ K EEK KK ++ +L+ E + + +K LE
Sbjct: 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
Query: 481 TQIKELQIRLDEAENNALKGGKKAIQKLEQRVRE--------------------LENELD 520
++ EL+ L E + G +++++LE+R++E E EL
Sbjct: 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELK 622
Query: 521 GEQRRHADAQKNLRKTERRIKELSFQAEEDRKN-----HERMQDLVDKLQQKIKTYKRQI 575
+ A + L +TE+R++EL + EE K +E +++ +L +++ + ++
Sbjct: 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682
Query: 576 EEAE---EIAALNLAKFRKAQQELEEAEERADLAEQAVSKI 613
EE E E L K ++ +E E+A++ + E+A+ ++
Sbjct: 683 EELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
Score = 48.5 bits (116), Expect = 1e-05
Identities = 90/406 (22%), Positives = 192/406 (47%), Gaps = 35/406 (8%)
Query: 201 AAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 260
EK+ + + + I E ++ +L EL+ +KE + EL LK EE +++LE++
Sbjct: 197 EKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEG 252
Query: 261 ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLR 320
+ L +++++L ++I E + I E+E+ K L+ E E + E+ +++
Sbjct: 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELRE 311
Query: 321 AQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE 380
+ LS+ E I+ ++L++ + LEE ++ + ++L +E R EE
Sbjct: 312 IEKRLSRLEEEI-NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH----ELYEE 366
Query: 381 SRQLLEQADRGR-RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLN 439
++ E+ +R + R ++L EL I K+ + L ++ E L
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE-LK 425
Query: 440 EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK 499
+A +KAK R E + +++L + ++K ++ L E E
Sbjct: 426 KAIEELKKAKGKCPVCGRELTE--------EHRKELLEEYTAELKRIEKELKEIEE---- 473
Query: 500 GGKKAIQKLEQRVRELENELDGEQR--RHADAQKNLRKTERRIKELSFQ-AEEDRKNHER 556
+KL + +RELE L E + + + L++ E ++K+ + + E+ + +E+
Sbjct: 474 ----KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529
Query: 557 MQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEER 602
+++ + KL+ +IK+ K+++E+ EE+ K + +++L+E EE
Sbjct: 530 LKEKLIKLKGEIKSLKKELEKLEELK----KKLAELEKKLDELEEE 571
Score = 47.4 bits (113), Expect = 3e-05
Identities = 118/586 (20%), Positives = 268/586 (45%), Gaps = 48/586 (8%)
Query: 11 LKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKA 70
+K ++ + E E+ +E + +++ + L E+E L+ EV + E+
Sbjct: 185 IKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
Query: 71 KAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWK-LKGSLDFINTLYCL 129
K ++ + G + L+ ++ +K+ + +++ + E K LK + L
Sbjct: 245 KELESLEGSKR---KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEF 301
Query: 130 LFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLA------T 183
E+ L + +L+ + EE I+ L +K LE+ K++L
Sbjct: 302 Y------EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355
Query: 184 EVEDLQLEVDRANAIANAAEK-KAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELF 242
E+E+ + A A E+ K + + + ++++L + ++E + +
Sbjct: 356 ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415
Query: 243 RLKGAYEEAQEQLEAVRRE-------NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEV 295
LK +E ++ +E +++ + L +E + L + E + +EK K +E
Sbjct: 416 ELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL--LEEYTAELKRIEKELKEIEE 473
Query: 296 EKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
++ +L+ L E E L++E L EL++ E ++ +K+Y + LE++
Sbjct: 474 KERKLRKELRELEKVLKKESE--LIKLKELAEQLKELEEKLKKYNLE------ELEKKAE 525
Query: 356 ARDDAREQLGIVERRANALQNELEESRQL---LEQADRGRRQAETELADAHEQLNELSAQ 412
+ +E+L ++ +L+ ELE+ +L L + ++ + E ELA+ ++L EL +
Sbjct: 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE 585
Query: 413 ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQ 472
+ +LE L+ L +E L E K++E++ ++ + +L +EL +
Sbjct: 586 SV------EELEERLKELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEELAET 638
Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN 532
EK + L +++EL+ + E E + ++ +L + + L EL+ ++R + +K
Sbjct: 639 EKRLEELRKELEELEKKYSEEEY---EELREEYLELSRELAGLRAELEELEKRREEIKKT 695
Query: 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578
L K + ++E +A+++ + E+ + V++L++K+K YK ++E
Sbjct: 696 LEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKYKALLKER 740
Score = 45.4 bits (108), Expect = 1e-04
Identities = 76/381 (19%), Positives = 174/381 (45%), Gaps = 29/381 (7%)
Query: 248 YEEAQEQLEAVRRENKNLADEVKDLL-------DQIGEGGRNIHEVEKARKRLEVEKDEL 300
YE A + L V +E K + ++ + + I E + + EV + + E EL
Sbjct: 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL 219
Query: 301 QAALEEAEAALEQ-EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDD 359
+ LE+ E +++ EE K +LE + + ++ ++++++++ +EE ++ ++
Sbjct: 220 REELEKLEKEVKELEELKEEIEELEKE--LESLEGSKRKLEEKIRELEERIEELKKEIEE 277
Query: 360 AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAA 419
E++ ++ E + + E+ R+ E L+ E++N + + +
Sbjct: 278 LEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
Query: 420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL 479
+ +LE EL+ +L++ L E + E ++A L + L+ ++ ++
Sbjct: 337 EERLE-ELKKKLKELEKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTPEKLEKELE 394
Query: 480 ETQIKELQIRLDEAENNALKGG-KKAIQKLEQRVRELEN----------ELDGEQRRH-- 526
E + + +I + ++ A G KK I++L++ + EL+ EL E R+
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELL 454
Query: 527 ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK--RQIEEAEE-IAA 583
+ L++ E+ +KE+ + + RK ++ ++ K + IK + Q++E EE +
Sbjct: 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514
Query: 584 LNLAKFRKAQQELEEAEERAD 604
NL + K +E E+ +E+
Sbjct: 515 YNLEELEKKAEEYEKLKEKLI 535
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 55.1 bits (133), Expect = 1e-07
Identities = 85/484 (17%), Positives = 181/484 (37%), Gaps = 59/484 (12%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
+ + R + L L++ + L E+ ++ + E + A
Sbjct: 280 AEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAF 339
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVR--------RE 261
+ E +L+ D +L + + E L L G +++ Q + E ++ R+
Sbjct: 340 EDADIE-QLQAD--LDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERD 396
Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKA-----RKRLEVEKDELQAALEEAEAALEQEEN 316
+ + + + ++ I E +A R++LE K E E E L + +
Sbjct: 397 LEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQ 456
Query: 317 KVLRAQL--ELSQANAEAQKNIKRYQ-------QQLKDVQTALEEEQRARDDAREQLGIV 367
++ A E + + +++ Q ++ +Q+ L + ++ RD+A E L
Sbjct: 457 RLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRA 516
Query: 368 ERRANALQNELEE-SRQLLEQA---------------DRGRRQAETEL---ADAHEQLNE 408
ERR L+ L+E QL QA + + EL D QL E
Sbjct: 517 ERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVE 576
Query: 409 LSAQATSISAAKR----------KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
S T + E EL+ +E L A +++A++ +V A
Sbjct: 577 GSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAE 636
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
+E + + A+T K + +++ Q L + A+ + Q+ E ++R+L+ +
Sbjct: 637 LEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAI---AERKQQAETQLRQLDAQ 693
Query: 519 LDGEQRRHADAQKNLRKT--ERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE 576
L + + L+ E R + L+ + + ++ L ++ K +++
Sbjct: 694 LKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLK 753
Query: 577 EAEE 580
E ++
Sbjct: 754 ELKK 757
Score = 53.2 bits (128), Expect = 5e-07
Identities = 63/308 (20%), Positives = 128/308 (41%), Gaps = 24/308 (7%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLK 344
+ E+ + E +E + A EA AL+Q + R Q E + + I +QQ +
Sbjct: 625 QAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAE 684
Query: 345 DVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHE 404
L+ + + ++E++ L+ ++ R+L + + E EL +
Sbjct: 685 TQLRQLDAQLKQ---------LLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLA 735
Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDEL------LNEAKNSEEKAKKAMVDAARL 458
QL+ A + AK +L+ + +L L + E K E+ + + A
Sbjct: 736 QLSAAIEAA--RTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVR 793
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK---KAIQKLEQRVREL 515
E+R + Q R +L + L I+L E E++A + + + I+ + R ++L
Sbjct: 794 RPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKL 853
Query: 516 ENELDG-EQRRHA--DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK 572
E E E++ + + LR R++ EL A ++ + L D+L++ + K
Sbjct: 854 EQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANANQAEGSISERL-DQLEEFKRKRK 912
Query: 573 RQIEEAEE 580
R + ++
Sbjct: 913 RLSGDLKK 920
Score = 45.5 bits (108), Expect = 1e-04
Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 18/271 (6%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLK 344
E+ +RL E++E Q A L E+++ A+ EL+Q + A + + +L+
Sbjct: 271 ELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELE 330
Query: 345 DVQTALEEEQRARDDAR-EQLGIVERRANALQNELEES----RQLLEQADRGRRQAETEL 399
LE+++ A +DA EQL + ++++ELEE L + +R+ E
Sbjct: 331 ----LLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLK 386
Query: 400 ADAHEQLNELSAQATSISAAKRKLEGEL-QTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
EQL + AA R+ + + DL L ++ + E K +
Sbjct: 387 QKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYE 446
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
+ Q++ L++A+ ++ E V +L++E
Sbjct: 447 LELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQ--------EQAEANVEQLQSE 498
Query: 519 LDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
L ++R +A + L++ ERR+ +L +E
Sbjct: 499 LRQLRKRRDEALEALQRAERRLLQLRQALDE 529
Score = 38.5 bits (90), Expect = 0.013
Identities = 57/339 (16%), Positives = 112/339 (33%), Gaps = 62/339 (18%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKI 212
L+ RL +AEE ++S K E+ + E+E+ + A A
Sbjct: 605 LRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLD------- 657
Query: 213 IGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDL 272
+ + + L +L+ + E + ++A+ QL + + K L ++ +
Sbjct: 658 LQRLQNEQQSLKDKLELAIAERK-------------QQAETQLRQLDAQLKQLLEQQQAF 704
Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEA 332
L+ + + R E+ K VE + L L + AA+E + EL +
Sbjct: 705 LEALKDDFRE-LRTERLAKWQVVEGE-LDNQLAQLSAAIEAARTQAKARLKELKKQYDRE 762
Query: 333 QKN-------IKRYQQQLKDVQTALEEEQRARDDARE----------QLGIVERRANALQ 375
+ +K ++Q+++++T +E R + RE + L
Sbjct: 763 LASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLA 822
Query: 376 NELEESRQLLEQAD----RGRRQAETELADAHEQLNELSAQATSISAAKRKL-------- 423
+L E E+ R + + ++ L Q + R L
Sbjct: 823 IQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLA 882
Query: 424 -----------EGELQTLHSDLDELLNEAKNSEEKAKKA 451
EG + L+E + K KK
Sbjct: 883 ELKEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKF 921
Score = 33.9 bits (78), Expect = 0.42
Identities = 52/334 (15%), Positives = 123/334 (36%), Gaps = 17/334 (5%)
Query: 17 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAA---------E 67
L+ RL +AEE ++S K E+ + E+E+ + A A E
Sbjct: 605 LRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNE 664
Query: 68 KKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLY 127
+++ + + K + ++ + +A ++ +A + + + + + +
Sbjct: 665 QQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLA--K 722
Query: 128 CLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVED 187
+ L+ + + + R + +ARL E ++ + + T + L ++E+
Sbjct: 723 WQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEE 782
Query: 188 LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGA 247
L+ ++R + + + E L D L E + R + L+
Sbjct: 783 LETTIER----IAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQE 838
Query: 248 YEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
+ + R++ + ++ LDQ+ E R + + + L+ + QA +
Sbjct: 839 LTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANANQAEGSIS 898
Query: 308 E--AALEQEENKVLRAQLELSQANAEAQKNIKRY 339
E LE+ + K R +L + IK +
Sbjct: 899 ERLDQLEEFKRKRKRLSGDLKKFLERFDGVIKDH 932
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 53.9 bits (129), Expect = 2e-07
Identities = 52/271 (19%), Positives = 98/271 (36%), Gaps = 8/271 (2%)
Query: 332 AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRG 391
+N++ QL D++ L + A+ + E A ++EL+++RQ E +
Sbjct: 65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQE 124
Query: 392 RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKA 451
A LA A ++L L+ QA + + L + + L + L K + A +
Sbjct: 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184
Query: 452 MVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQR 511
L + AQ A + + +EL R A+ A Q ++QR
Sbjct: 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTA--------QAIQQR 236
Query: 512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
++ + R ++ R+ +R + +E + Q V QQ T
Sbjct: 237 DAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ 296
Query: 572 KRQIEEAEEIAALNLAKFRKAQQELEEAEER 602
+ Q+ +AQ +L + R
Sbjct: 297 RGQVLAGAAQRVAQAQAQAQAQAQLLSSANR 327
Score = 44.2 bits (104), Expect = 2e-04
Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 16/228 (7%)
Query: 388 ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEK 447
+R R +L D QL L + + KR E E + S+L + E +
Sbjct: 65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSEL-----QKARQERE 119
Query: 448 AKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL--QIRLDEAENNALKGGKKAI 505
A + + AAR + +A+Q+ A+ ++ + L+T++K L Q R EA+ +L+ +K +
Sbjct: 120 AVRQELAAAR-QNLAKAQQELARLTKQAQD-LQTRLKTLAEQRRQLEAQAQSLQASQKQL 177
Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
Q +++ +L + +NL A+ + R +
Sbjct: 178 QASATQLKSQVLDLKLRSAQIEQEAQNLATRAN-------AAQARTEELARRAAAAQQTA 230
Query: 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKI 613
Q I+ QI + + A + R+ +++L+ E EQ V+++
Sbjct: 231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL 278
Score = 43.1 bits (101), Expect = 4e-04
Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 10/211 (4%)
Query: 283 IHEVEKARKRLEVEKDELQAALEEAEA------ALEQEENKVLRAQLELSQANAEAQKNI 336
+ +++ R +L + EL A E A A E K + + + Q A A++N+
Sbjct: 73 VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNL 132
Query: 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAE 396
+ QQ+L + ++ Q EQ +E +A +LQ ++ + Q +
Sbjct: 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192
Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
A ++ L+ +A + A EL + + + + + + A
Sbjct: 193 LRSAQIEQEAQNLATRANAAQA----RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA 248
Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQ 487
A+++R + Q E + LE ++ +L+
Sbjct: 249 ARAEQIRERERQLQRLETAQARLEQEVAQLE 279
Score = 41.2 bits (96), Expect = 0.002
Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 15/249 (6%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
R ++ LA A + + Q++ L K Q L T ++ L + + A A + + K +
Sbjct: 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEE---AQEQLEAVRRENKNLA 266
+ K +V DL ++E +N +T + EE + + +
Sbjct: 178 QASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
Query: 267 DEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAA------LEQEENKVLR 320
++ QI I E E+ +RLE + L+ + + EA L Q+ R
Sbjct: 238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQR 297
Query: 321 AQL------ELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
Q+ ++QA A+AQ + + L R R RR
Sbjct: 298 GQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRRSPRRGRRQRPVTRHTTRRRRPA 357
Query: 375 QNELEESRQ 383
+ R+
Sbjct: 358 TRQSPSGRE 366
Score = 35.4 bits (81), Expect = 0.11
Identities = 37/211 (17%), Positives = 91/211 (43%), Gaps = 15/211 (7%)
Query: 219 KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDL------ 272
++DD+ +L A + E E + E A+ +L+ R+E + + E+
Sbjct: 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134
Query: 273 ----LDQIGEGGRNIHE----VEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE 324
L ++ + +++ + + R++LE + LQA+ ++ +A+ Q +++VL +L
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQL 384
+Q EAQ N+ + L A + + + + + ++ +
Sbjct: 195 SAQIEQEAQ-NLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ 253
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATS 415
+ + +R ++ ET A +++ +L A +
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQA 284
Score = 35.0 bits (80), Expect = 0.14
Identities = 32/233 (13%), Positives = 84/233 (36%), Gaps = 17/233 (7%)
Query: 146 LFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKK 205
LF R L++ + + ++ L L + E + E + A + A ++
Sbjct: 62 LFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQG----EKRAAETEREAARSELQKARQE 117
Query: 206 AKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 265
+A+ + + + + EL K+ ++ T L L + + Q ++++ K L
Sbjct: 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177
Query: 266 ADEVKDL----------LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEE 315
L QI + +N+ A + E AA ++ A++Q +
Sbjct: 178 QASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
Query: 316 NKVLRAQLELSQAN---AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
++ + +++ E ++ ++R + ++ + + +
Sbjct: 238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQ 290
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 53.8 bits (129), Expect = 3e-07
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 396 ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL---LNEAKNSEEKAKKAM 452
+ EL A + +EL Q + +++ +R L+ +L L + D L LN ++++K K++M
Sbjct: 419 QAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSM 478
Query: 453 VDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI------- 505
+ L++E D EK Q+ E + R E E A + +A
Sbjct: 479 QSMEK---RLKSEADSRVNAEK-------QLAEEKKRKKEEEETAARAAAQAAASREECA 528
Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
+ L+Q ++LE E+ + ++ R E+ +EL +E K E + + +Q
Sbjct: 529 ESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKY-QESEKETEVLMSALQAMQ 587
Query: 566 QK 567
K
Sbjct: 588 DK 589
Score = 40.3 bits (94), Expect = 0.003
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
Query: 289 ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKN-IKRYQQQLKDVQ 347
A +RLE + +LQA L++A E E LR Q+ L + + K+ + + +++ +Q
Sbjct: 407 AIERLEQDIKKLQAELQQARQ-NESE----LRNQISLLTSLERSLKSDLGQLKKENDMLQ 461
Query: 348 TALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQ-L 406
T L A+ ++ + +E+R + + + + L + + +++ E A A Q
Sbjct: 462 TKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAA 521
Query: 407 NELSAQATSISAAKR-------KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
A S+ AK+ KLE +L+ + L EA+ K +++ + L
Sbjct: 522 ASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQEL-RKYQESEKETEVLM 580
Query: 460 DELRAEQDHAQTQEKLRKALETQIK 484
L+A QD E A ET++K
Sbjct: 581 SALQAMQDKNLMLENSLSA-ETRLK 604
Score = 34.5 bits (79), Expect = 0.24
Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 13/187 (6%)
Query: 196 NAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQL 255
N I AI+++ + K L AEL +++ ++ L + L
Sbjct: 395 NCIPENKISTPSAIERLEQDIK----KLQAELQQARQNESELRNQISLLTSLERSLKSDL 450
Query: 256 EAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAA---LEEAEAALE 312
+++EN L ++ ++ + +++ +E KRL+ E D A L E + +
Sbjct: 451 GQLKKENDMLQTKLNSMVSAKQKDKQSMQSME---KRLKSEADSRVNAEKQLAEEKKRKK 507
Query: 313 QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
+EE RA + + + E +++K+ +Q L+ LE + + ++ E+ ++E+ A
Sbjct: 508 EEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKE---EECRMLEKEAQ 564
Query: 373 ALQNELE 379
L+ E
Sbjct: 565 ELRKYQE 571
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 48.7 bits (116), Expect = 1e-05
Identities = 74/342 (21%), Positives = 129/342 (37%), Gaps = 19/342 (5%)
Query: 215 EWKLKVDDLAAELDASQKECRNY----STELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
E++ +++ L A A + + Y T L R AQ Q + + R+ DE++
Sbjct: 234 EYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293
Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQA-----ALEEAEAALEQEENKVLRAQLEL 325
++ E +E+ L + LQ EE E A E A +
Sbjct: 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA-DA 352
Query: 326 SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLL 385
QA EA+ ++ +++L + L++ +R AREQL RA E L
Sbjct: 353 RQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAAL 412
Query: 386 ---EQADRGRRQAETELADAH-EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEA 441
E + G A + AD Q +E A + E + DEL EA
Sbjct: 413 AAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEA 472
Query: 442 KNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE--AENNALK 499
+ + +A+ A D A + R A Q +LR+ + + L + + + L+
Sbjct: 473 EQAAARAELA--DEAVHREGARLAWVDA-WQAQLRELTILAVDDQPGALADLDSWDALLQ 529
Query: 500 GGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIK 541
G + V+ L +EL E+ A++ L + ++
Sbjct: 530 GEAPVRVAVYSAVQPLADELTRERAALRLAEEVLEEERDALR 571
Score = 40.6 bits (95), Expect = 0.004
Identities = 50/262 (19%), Positives = 91/262 (34%), Gaps = 30/262 (11%)
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
+ A A L+ V EL++ + Q+ L D + R+ A
Sbjct: 737 ERARLRRIAELDARLAAVDDELAELARELRA----LGARQRALADELAGAPSD-RSLRAA 791
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
+ ER+A + + EL + + A +QA EL L+ L ++ A
Sbjct: 792 HRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLD-LPTDPDALEAVG 850
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL----------ADELRAEQDHAQ 470
L+ LH+ L+ + E +++ +A + AAR A E RAE + A
Sbjct: 851 LALKRFGDHLHT-LEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEAS 909
Query: 471 -TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADA 529
L +++ + E++ RL E + A+ + + L L + A
Sbjct: 910 LRLRTLEESVGAMVDEIRARLAET--------RAALASGGRELPRLAEALATAEEARGRA 961
Query: 530 QKNLRKTERRIKELSFQAEEDR 551
+ + E R
Sbjct: 962 ----EEKRAEADATLDERAEAR 979
Score = 38.3 bits (89), Expect = 0.016
Identities = 47/252 (18%), Positives = 77/252 (30%), Gaps = 32/252 (12%)
Query: 173 ALEKTKQRLATEVEDLQLEVDRANA-IANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQ 231
A E+ + R E++ VD A +A + E D L A+
Sbjct: 735 ARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSD--RSLRAAH 792
Query: 232 KECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARK 291
+ + + A + A + R E + A
Sbjct: 793 RRAAEAERQAESAERELARAARKAAAAAAA---------------WKQARRELERDAADL 837
Query: 292 RLEVEKDELQAALEEAEAALE---QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
L + D ALE AL+ + + A EL A A + R + D +
Sbjct: 838 DLPTDPD----ALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDARE 893
Query: 349 ALEEEQRARDD---AREQLGIVER----RANALQNELEESRQLLEQADRGRRQAETELAD 401
A E+ AR + A +L +E + ++ L E+R L R + LA
Sbjct: 894 AAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALAT 953
Query: 402 AHEQLNELSAQA 413
A E +
Sbjct: 954 AEEARGRAEEKR 965
Score = 37.5 bits (87), Expect = 0.028
Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 19/234 (8%)
Query: 387 QADRGRRQAETE--LADAHEQLNELSAQATSISAAKRKLEGELQTL--HSDLDELLNEAK 442
+ R RR AE + LA ++L EL+ + ++ A +R L EL L A
Sbjct: 737 ERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAA 796
Query: 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD----EAENNAL 498
+E +A+ A + AR A + A + R+ LE +L + D EA AL
Sbjct: 797 EAERQAESAERELARAARKAAAAAAAWKQ---ARRELERDAADLDLPTDPDALEAVGLAL 853
Query: 499 KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQ 558
K + LE VREL + R A+ + + E +E + A E R E
Sbjct: 854 KRFGDHLHTLEVAVRELRHA----ATRAAEQRARAARAESDAREAAEDAAEARAEAEEAS 909
Query: 559 DLVDKLQQKIKTYKRQI--EEAEEIAAL--NLAKFRKAQQELEEAEERADLAEQ 608
+ L++ + +I AE AAL + + + L AEE AE+
Sbjct: 910 LRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEE 963
Score = 37.5 bits (87), Expect = 0.031
Identities = 54/273 (19%), Positives = 93/273 (34%), Gaps = 26/273 (9%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR 357
DE + LE EA N + R + ++ Q Q + L +
Sbjct: 233 DEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDEL 292
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
+ ARE+ ++ R AL+ E + R LE + E+L A A ++
Sbjct: 293 ETAREEERELDARTEALEREADALRTRLEAL------QGSPAYQDAEELERARADAEALQ 346
Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQ-----DHAQTQ 472
AA ++ S L+E + A + ++L A T
Sbjct: 347 AAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTA 406
Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVREL---ENELDGEQRRHADA 529
E +++EL LD +A + I + ++V L ++ D + HA A
Sbjct: 407 EPDAALAAQELQELG-ALDARRQDA----DRVIAQRSEQVALLRRRDDVADRAEATHAAA 461
Query: 530 QKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
+ R EL +AE+ E + V
Sbjct: 462 RA-------RRDELDEEAEQAAARAELADEAVH 487
Score = 37.1 bits (86), Expect = 0.040
Identities = 31/157 (19%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQT----LHSDLDELLNEAKNSEEKAKKAM 452
T++ADA EQL+E + + A +R L LQ + L ++++ + +
Sbjct: 223 TDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLS 282
Query: 453 VDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRV 512
D R DEL ++ + + +ALE + L+ RL+ + + + +++
Sbjct: 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADA 342
Query: 513 RELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
L+ ++ +A+ L + RR+ E + + ++
Sbjct: 343 EALQAAAADARQAIREAESRLEEERRRLDEEAGRLDD 379
Score = 34.0 bits (78), Expect = 0.37
Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
R+ ++ E A ++ ++ L + DL L D A+ +
Sbjct: 799 ERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPD-ALEAVGLALKRFG 857
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK--GAYEEAQEQLEAVRRENKNLAD 267
D + + A A+++ R E + EA+ + E + L +
Sbjct: 858 DHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEE 917
Query: 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ 327
V ++D+I + E A E L AL AE A + E K A L +
Sbjct: 918 SVGAMVDEIRA---RLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDE 974
Query: 328 ANAEAQKNIKRYQ 340
I + +
Sbjct: 975 RAEARDHAIGQLR 987
Score = 34.0 bits (78), Expect = 0.37
Identities = 71/335 (21%), Positives = 121/335 (36%), Gaps = 23/335 (6%)
Query: 174 LEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKE 233
+R AT + Q + D+ + A + + + E + + L E DA +
Sbjct: 260 ARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTR 319
Query: 234 CRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL 293
E + AY++A+E LE R + + L D I E + E+ R+RL
Sbjct: 320 -----LEALQGSPAYQDAEE-LERARADAEALQAAAADARQAIREAESRL---EEERRRL 370
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
+ E L A E AA EQ RA L + + Q+L + ++
Sbjct: 371 DEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDA 430
Query: 354 QRARDDAREQLGIVERRAN-------ALQNELEESRQLLEQADRGRRQAETELADAHEQL 406
R EQ+ ++ RR + +L E+A++ +AE H +
Sbjct: 431 DRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREG 490
Query: 407 NELSAQATSISAAKRKLEGELQTLHSDLDEL--LNEAKNSEEKAKKAMVDAAR-LADEL- 462
L+ + + + L +L + E + A+ A + LADEL
Sbjct: 491 ARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAVQPLADELT 550
Query: 463 RAEQDHAQTQEKL---RKALETQIKELQIRLDEAE 494
R +E L R AL T+ + L+ D
Sbjct: 551 RERAALRLAEEVLEEERDALRTERERLEQGTDRDP 585
Score = 29.4 bits (66), Expect = 9.5
Identities = 102/610 (16%), Positives = 184/610 (30%), Gaps = 101/610 (16%)
Query: 150 RRKLQARLAEAEETIES----LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKK 205
LQA A+A + I L ++ L++ RL +L+ ++ A A
Sbjct: 342 AEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERA--- 398
Query: 206 AKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 265
+ + AA +E + EQ+ +RR
Sbjct: 399 --GLSPA-----HTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRR---- 447
Query: 266 ADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL 325
D+V D + R R L+ E ++ A E A+ A+ +E ++
Sbjct: 448 -DDVADRAEATHAAAR------ARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQ 500
Query: 326 SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLL 385
+Q + L D+ + + + R V L +EL R L
Sbjct: 501 AQLRELTILAVDDQPGALADL-DSWDALLQGEAPVRV---AVYSAVQPLADELTRERAAL 556
Query: 386 EQADRGRRQAETELADAHEQLN---ELSAQATSISAAKRK-------------------- 422
A+ + L E+L + AA R+
Sbjct: 557 RLAEEVLEEERDALRTERERLEQGTDRDPPPPHTRAALRRAGRAGAPLWQLVDFADDVPA 616
Query: 423 -----LEGELQTLHSDL-------DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
LE L+ + L D L + + + LAD LR D
Sbjct: 617 DVRAGLEAALE--AAGLLDAWVTADGTLQDPDGAVLLHPATVAPGETLADVLRPWLDPPV 674
Query: 471 TQEKLRKALETQIKEL--QIRLDEAENNALKG-----GKKAIQKLEQRVRELENELDGEQ 523
+ E+ + + + I A+ A G+ + L + E G
Sbjct: 675 SAERQPEVDPAAVTRVLEGIACGTADAGAAHTWIDVDGRFRLGVLRGAWAKPAAEYIGAA 734
Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNH----ERMQDLVDKLQ-----QKIKTYKRQ 574
R + + + + R+ + + E + R + L D+L + ++ R+
Sbjct: 735 ARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRR 794
Query: 575 IEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVT 634
EAE + A++EL A +A A A + R + R ++ L L
Sbjct: 795 AAEAER-------QAESAERELARAARKAAAAAAAWKQARR---ELERDAADLDLPTDPD 844
Query: 635 FCRQITVQITS---------KLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAE 685
+ + + V L R RA + + E A+ +AE
Sbjct: 845 ALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAE 904
Query: 686 ALRMKKKLEA 695
A +L
Sbjct: 905 AEEASLRLRT 914
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 47.4 bits (113), Expect = 2e-05
Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 10/187 (5%)
Query: 341 QQLKDVQTALEEEQRARDD-AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETEL 399
+Q+K + LE + +E GI+ + +E+ E+++ LE A +A +
Sbjct: 168 EQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQR 227
Query: 400 ADAHEQLNELSAQATS-ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
QL + S A +L+G ++ L LD L + + A+L
Sbjct: 228 DALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQL 287
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
++ E + + ++LQI L EAE I LE RV EL
Sbjct: 288 EEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAE--------IASLEARVAELTAR 339
Query: 519 LDGEQRR 525
++ +
Sbjct: 340 IERLESL 346
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 47.4 bits (113), Expect = 2e-05
Identities = 42/247 (17%), Positives = 90/247 (36%), Gaps = 23/247 (9%)
Query: 152 KLQARLAEAEETIESLNQKV-------IALEKTKQRLATEVEDLQLEVDRANAIANAAEK 204
Q L+ + + V L + ++L E++ L+ + A ++ E+
Sbjct: 54 VAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEE 113
Query: 205 KAKAIDKIIGEWKLKVDDLAAELDASQK-ECRNYSTELFRLKGAYEEAQEQLEAVRRENK 263
+ +++ + E +++DL L+ + ++ L R + +L VRRE
Sbjct: 114 LTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLR---GLKFLLVRLGLVRREKL 170
Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK-DELQAALEEAEAALEQEENKVLRAQ 322
V + E +A + V E + + L E +V
Sbjct: 171 EALVGVIEDEVA------LYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFD 224
Query: 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA----REQLGIVERRANALQNEL 378
S+ +E ++ I Q +L+ +++ LE + RE L I E+ + ++L
Sbjct: 225 GGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEI-EKALGDVLSKL 283
Query: 379 EESRQLL 385
+ L
Sbjct: 284 ARTEYTL 290
Score = 39.7 bits (93), Expect = 0.005
Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 17/249 (6%)
Query: 217 KLKVDDLAAELDASQKECRNYSTELFRLK---GAYEEAQEQLEAVRRENKNLADEVKDLL 273
K +L ++ + S+ L + + + + +L + E + L E+K L
Sbjct: 39 GEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLE 98
Query: 274 DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEE-----NKVLRAQLELSQA 328
+ I + EVE+ ++LE EL LE+ E LE+ E + L L
Sbjct: 99 EVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFL 158
Query: 329 NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
+ + L V +A + +V A L + +L
Sbjct: 159 LVRLGLVRREKLEALVGVIEDEVALYGENVEASVVI-VVAHGAEDLDKVSKILNELG--- 214
Query: 389 DRGRRQAETELADA-HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKN--SE 445
E E ++EL I L EL+ L + E L +
Sbjct: 215 --FELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEI 272
Query: 446 EKAKKAMVD 454
EKA ++
Sbjct: 273 EKALGDVLS 281
Score = 35.0 bits (81), Expect = 0.16
Identities = 36/237 (15%), Positives = 79/237 (33%), Gaps = 43/237 (18%)
Query: 3 EQIDQLNKLKTKR---KLQARLAEAEETIESLNQKV-------IALEKTKQRLATEVEDL 52
E L +L+ + Q L+ + + V L + ++L E++ L
Sbjct: 38 EGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSL 97
Query: 53 QLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAE--------KKA 104
+ + A ++ E+ + +++ + E L L+ D + A +
Sbjct: 98 EEVIKPAEKFSSEVEELTRKLEERLSE--LDEELEDLEDLLEELEPLAYLDFDLSLLRGL 155
Query: 105 KAIDKIIGEWK------LKGSLDFINTLY-------CLLFIPFLNEKSLK---------- 141
K + +G + L G ++ LY ++ + E K
Sbjct: 156 KFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGF 215
Query: 142 HPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAI 198
Y + ++E EE I + ++ +L + LA ++ + L V I
Sbjct: 216 ELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEI 272
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 46.3 bits (111), Expect = 5e-05
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 5/152 (3%)
Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
AE + +E+ ++ LE KE + EA A + K + E+ +RE NEL +
Sbjct: 29 AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE 88
Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT-YKRQIEEAEEIA 582
+R ++NL + +++ + E+ K E+ Q ++K +++++ + Q++E E I+
Sbjct: 89 KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS 148
Query: 583 ALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
L + + + LE+ EE A +A I+
Sbjct: 149 GLTAEEAK--EILLEKVEEEA--RHEAAVLIK 176
Score = 37.1 bits (87), Expect = 0.037
Identities = 44/185 (23%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 288 KARKRLEVEKDELQAALEEAEA-ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDV 346
A +++ ++E + LEEA+ A ++ +L A+ E+ + E +K ++ + +L+ +
Sbjct: 28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL 87
Query: 347 QTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQL 406
+ L +++ D E L E + ELE+ +Q LE+ + + E E++
Sbjct: 88 EKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
Query: 407 NELSA-QATSI--SAAKRKLEGELQTLHSDLDELLNEAK-NSEEKAKKAMVDA-ARLADE 461
+ L+A +A I + + E L + E+ EAK +++KAK+ + A R A +
Sbjct: 148 SGLTAEEAKEILLEKVEEEARHEAAVL---IKEIEEEAKEEADKKAKEILAQAIQRCAAD 204
Query: 462 LRAEQ 466
AE
Sbjct: 205 HVAET 209
Score = 35.9 bits (84), Expect = 0.067
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 25/162 (15%)
Query: 243 RLKGAYEEAQEQLEAVRRENKNLAD----EVKDLLDQIGEGGRNIHEVEKARKRLEVEKD 298
++K A EEA+ LE ++E + + E K+ E+ K R E E
Sbjct: 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKE-------------EIHKLRNEFEKELR 78
Query: 299 ELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARD 358
E + L++ E L Q+E + R L + E +K K +Q+ ++++ EE + +
Sbjct: 79 ERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
Query: 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
+ ++L ER + E +E LLE+ +A E A
Sbjct: 139 EQLQEL---ERISGLTAEEAKE--ILLEKV---EEEARHEAA 172
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 45.1 bits (107), Expect = 9e-05
Identities = 53/282 (18%), Positives = 102/282 (36%), Gaps = 38/282 (13%)
Query: 226 ELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHE 285
+L QKE ++ + + ++QL+++ E +L ++ + D + + + I +
Sbjct: 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98
Query: 286 VEKARKRLEVEKDELQAALEEAEAAL---------------EQEENKVLRAQL--ELSQA 328
+ LEV++ E + L E AAL E + V A L+ A
Sbjct: 99 LNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPA 158
Query: 329 NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
AE +K +QL V+ + EQ + + + + QLLE+
Sbjct: 159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE----------QRAQQAKLAQLLEER 208
Query: 389 DRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKA 448
+ Q +EL+ ++L EL A + + E +A+ + A
Sbjct: 209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA-----------KAREAAAAA 257
Query: 449 KKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL 490
+ A A + E EK+ + L+ +L
Sbjct: 258 EAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGALRGQL 299
Score = 41.2 bits (97), Expect = 0.002
Identities = 49/266 (18%), Positives = 95/266 (35%), Gaps = 29/266 (10%)
Query: 373 ALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS 432
A +L++ ++ + ++ R+ + + A +QL L + S+ A + +L+ L
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94
Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQ--------------DHAQTQEKLRKA 478
+ + LN N+ E ++ RLA++L A Q + AQ +L
Sbjct: 95 QIAD-LNARLNALEVQERE--QRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIY 151
Query: 479 LETQIKELQIRLDEAENN--ALKGGKKAIQKLEQRVRELENELDGEQRRHADA----QKN 532
R+D + L + I + + L +E +Q + A +K
Sbjct: 152 YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKT 211
Query: 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKA 592
L + + + EE R N R+++ + + + E AA A R
Sbjct: 212 LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA------KAREAAAAAEAAAARAR 265
Query: 593 QQELEEAEERADLAEQAVSKIRTKGG 618
E + E I + GG
Sbjct: 266 AAEAKRTGETYKPTAPEKMLISSTGG 291
Score = 40.5 bits (95), Expect = 0.003
Identities = 49/255 (19%), Positives = 94/255 (36%), Gaps = 34/255 (13%)
Query: 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQ 363
L++ + + E K+ Q + ++ +K +K + ++ ++ L E R+Q
Sbjct: 40 LKQIQKEIAALEKKIREQQDQRAKL----EKQLKSLETEIASLEAQLIETADDLKKLRKQ 95
Query: 364 LGIVERRANALQNELEESRQLL----------------------EQADRGRRQAETELAD 401
+ + R NAL+ + E R+ L E A R R A A
Sbjct: 96 IADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGAL 155
Query: 402 AH---EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
E+++ L A ++A + ++ E L + L E + + ++ A+L
Sbjct: 156 NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL 215
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
EL A+Q + L+ +I + +A A A + R R E +
Sbjct: 216 NSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA-----AAAEAAAARARAAEAK 270
Query: 519 LDGEQRRHADAQKNL 533
GE + +K L
Sbjct: 271 RTGETYKPTAPEKML 285
Score = 38.9 bits (91), Expect = 0.008
Identities = 42/273 (15%), Positives = 89/273 (32%), Gaps = 21/273 (7%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
L+ ++ E ++ L +++ +LE L ++ + ++ + + A++
Sbjct: 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108
Query: 212 IIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKD 271
E + + LA +L A Q+ RN L E + R
Sbjct: 109 QEREQRRR---LAEQLAALQRSGRNPPPALLVS-------PEDAQRSVRLAIYYGALNPA 158
Query: 272 LLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE 331
++I + ++ R + E+ EL L E A +L+Q E
Sbjct: 159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQA-----------KLAQLLEE 207
Query: 332 AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRG 391
+K + + +L Q LEE + + ++ E A + + +A
Sbjct: 208 RKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAA 267
Query: 392 RRQAETELADAHEQLNELSAQATSISAAKRKLE 424
+ E L + A + +L
Sbjct: 268 EAKRTGETYKPTAPEKMLISSTGGFGALRGQLA 300
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 45.0 bits (107), Expect = 1e-04
Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 54/280 (19%)
Query: 296 EKDELQAALEEAEAAL---EQEENKVLRAQLELSQANAEAQKNIKRYQQQL-------KD 345
++ ++ LE+A+AA + E + L++ L + + + K+YQQ + +
Sbjct: 24 DEKQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAE 83
Query: 346 VQTALEEEQRARDDAREQLGIVERRANALQNE---LEESRQLLEQADRGRRQAETELADA 402
++ L E+ + LQ LE+SRQ ++ DR R E++D+
Sbjct: 84 LRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAR-----EISDS 138
Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLHSD---LDELLNEAKNSEEKAKKAMVDA---- 455
L++L Q T ++E LQTL + L + A +E A KA+VD
Sbjct: 139 ---LSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELA 195
Query: 456 ----------ARLADEL---RAEQDHAQTQEKLRKALETQ-IKELQIRLDEAENNALKGG 501
ARL EL R++Q A Q LR L +Q +E + L+ E A + G
Sbjct: 196 QLSANNRQELARLRSELAKKRSQQLDAYLQA-LRNQLNSQRQREAERALESTELLAEQSG 254
Query: 502 K--KAIQKLEQRVRELENELD---------GEQRRHADAQ 530
K+I + REL L+ Q+R A +Q
Sbjct: 255 DLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQ 294
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 44.1 bits (104), Expect = 3e-04
Identities = 82/334 (24%), Positives = 135/334 (40%), Gaps = 50/334 (14%)
Query: 295 VEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQ 354
V+ A L AE LE + L L Q Q+ I+RYQ L+++ LEE+
Sbjct: 310 VDMSRELAELNGAEGDLEADYQAASD-HLNLVQTALRQQEKIERYQADLEELTIRLEEQN 368
Query: 355 RARDDAREQLGIVERRANALQNELEESRQLLE--------QADRG--RRQAETELADAHE 404
++A E+ E RA A + E++E + L Q R +QA L A E
Sbjct: 369 EVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKE 428
Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA-----RLA 459
+ A S + + + L L E K S +A + + A +A
Sbjct: 429 LCHLPDLTADSAEEWLETFQAKEEEATEKLLSL--EQKMSMAQAAHSQFEQAYQLVVAIA 486
Query: 460 DELRAEQDHAQTQEKLR-----KALETQIKELQIRLDEAENNALKGGKKAIQKLEQR--V 512
EL + +E LR + L Q++ L++RL E E Q+L Q+
Sbjct: 487 GELARSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELE-----------QRLRQQQSA 535
Query: 513 RELENELDGEQRRHADAQK---NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
L + Q ++ DA++ ++ E I+ LS R+ RM L+Q+ +
Sbjct: 536 ERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQ--RMA-----LRQEQE 588
Query: 570 TYKRQIEEAEEIAALNLAKFRKAQQELEEAEERA 603
+ +I+ + A + LA AQ LE+ E++
Sbjct: 589 QLQSRIQSLMQRAPVWLA----AQNALEQLSEQS 618
Score = 31.8 bits (72), Expect = 1.7
Identities = 32/204 (15%), Positives = 80/204 (39%), Gaps = 8/204 (3%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKA---- 206
++ L++ E L E+ K+ A + + +A A+ +++A
Sbjct: 913 QQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSY 972
Query: 207 -KAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 265
+ + + L + L L+ ++ E +L + + + + L +++
Sbjct: 973 SDSAEMLSENSDLN-EKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTK 1031
Query: 266 ADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL 325
+ + +L ++ + G + A +R + +DEL A L + Q E ++ + E+
Sbjct: 1032 KELLNELQQELQDIG--VRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEM 1089
Query: 326 SQANAEAQKNIKRYQQQLKDVQTA 349
+ +K + Y + + V TA
Sbjct: 1090 DNLTRKLRKLERDYFEMREQVVTA 1113
Score = 29.1 bits (65), Expect = 9.9
Identities = 36/187 (19%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE 306
A++ A+E L + ++LA++V+ L ++ E + + + + A + L L+
Sbjct: 494 AWDVARELLREGP-DQRHLAEQVQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDA 552
Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ-QQLKDVQTALEEEQRARDDAREQLG 365
E +E + L L S +NA Q+ R + +QL+ +L + A+ L
Sbjct: 553 EELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALE 612
Query: 366 IVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEG 425
+ ++ E +S+ + E + E+ E + + + A K L+
Sbjct: 613 QLSEQSGE---EFTDSQDVTEY-----------MQQLLEREREATVERDELGARKNALDE 658
Query: 426 ELQTLHS 432
E++ L
Sbjct: 659 EIERLSQ 665
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 43.4 bits (103), Expect = 3e-04
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 28/233 (12%)
Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLD-----------QIGEGGRNIHEVEKARKRLEV 295
A+++A+ +LE ++ + + A DLL Q GE E+E+ RKRL
Sbjct: 165 AWKQARRELEDLQEKERERAQR-ADLLQFQLEELEELNLQPGE----DEELEEERKRLS- 218
Query: 296 EKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
++L A++ A L E++ V + L L EA +++ Y +L ++ LEE
Sbjct: 219 NSEKLAEAIQNALELLSGEDDTV--SALSLLGRALEALEDLSEYDGKLSELAELLEEALY 276
Query: 356 ARDDAREQLGIVERRANALQNELE--ESR-QLLEQADRGRRQAETELADAHEQLNELSAQ 412
++A E+L N LE E R L+ R +L + +++ E AQ
Sbjct: 277 ELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQ 336
Query: 413 ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465
+ + LE E++ L ELL A+ KKA A L E+ AE
Sbjct: 337 LDNSEESLEALEKEVKKLK---AELLEAAEALSAIRKKA---AKELEKEVTAE 383
Score = 43.4 bits (103), Expect = 4e-04
Identities = 52/260 (20%), Positives = 104/260 (40%), Gaps = 18/260 (6%)
Query: 267 DEVKDLLDQ-IGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL-E 324
+ + LLD G ++A + + + EL+ E+ ++ + +L+ QL E
Sbjct: 139 ELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRAD--LLQFQLEE 196
Query: 325 LSQANA-----EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE 379
L + N E + ++ + + A++ + + +L
Sbjct: 197 LEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSA-----LSLLGRAL 251
Query: 380 ESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLN 439
E+ + L + D + L +A +L E S + + A +LE + L +++E L
Sbjct: 252 EALEDLSEYDGKLSELAELLEEALYELEEASEE---LRAYLDELEFDPNRLE-EVEERLF 307
Query: 440 EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK 499
K+ K + D D+++ E E+ +ALE ++K+L+ L EA
Sbjct: 308 ALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367
Query: 500 GGKKAIQKLEQRVRELENEL 519
KKA ++LE+ V L
Sbjct: 368 IRKKAAKELEKEVTAELKAL 387
Score = 33.7 bits (78), Expect = 0.38
Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 48/257 (18%)
Query: 371 ANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTL 430
Q +E+ Q +QA R + + + ++ + L Q + + GE
Sbjct: 152 EELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQ-PGE---- 206
Query: 431 HSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALET--------- 481
DE L E + ++K + L E D L +ALE
Sbjct: 207 ----DEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDG 262
Query: 482 QIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIK 541
++ EL L+EA LE+ EL LD + D L + E R+
Sbjct: 263 KLSELAELLEEALYE-----------LEEASEELRAYLDELE---FDPN-RLEEVEERLF 307
Query: 542 ELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601
L A RK ++DL++ L + EE+A L+ ++ E E +
Sbjct: 308 ALKSLA---RKYGVTIEDLLEYLDKI----------KEELAQLDNSEESLEALEKEVKKL 354
Query: 602 RADLAE--QAVSKIRTK 616
+A+L E +A+S IR K
Sbjct: 355 KAELLEAAEALSAIRKK 371
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 43.1 bits (102), Expect = 4e-04
Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 218 LKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV----KDLL 273
+++D E DA++ E +++ RL+ E A+ + EA + D++ +
Sbjct: 72 VELDATDVEADAAELE-----SQVLRLEA--EVARLRAEADSQAAIEFPDDLLSAEDPAV 124
Query: 274 DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ 333
++ +G +++ E K+ R ++E Q EAE A Q + + LR QLE+ EA+
Sbjct: 125 PELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184
Query: 334 KNIKRYQ----QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQ-LLEQA 388
+ +K +L +++ E Q +L +++R+ + LQ E ++ Q E+
Sbjct: 185 RKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEV 244
Query: 389 DRGRRQAETELADAHEQLNELSAQAT 414
+A+ LA+ E+LN+ +
Sbjct: 245 LEELTEAQARLAELRERLNKARDRLQ 270
Score = 42.3 bits (100), Expect = 7e-04
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 35/236 (14%)
Query: 294 EVEKDELQAALEE--AEAALEQEENKVLRAQLELSQANAEA--QKNIKRYQQQLKDVQTA 349
V+ ++ L+ EA + E++VLR + E+++ AEA Q I+ L A
Sbjct: 64 RVKAGQVLVELDATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPA 123
Query: 350 LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL 409
+ E + Q + E R + L+ +LE +Q E ELA QL L
Sbjct: 124 VPELIK------GQQSLFESRKSTLRAQLELI-------LAQIKQLEAELAGLQAQLQAL 170
Query: 410 SAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHA 469
Q IS E L + +EK + ++ L E Q
Sbjct: 171 RQQLEVIS------------------EELEARRKLKEKGLVSRLELLELERERAEAQGEL 212
Query: 470 QTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525
E + L+ QI ELQ+ + E + + + + + R+ EL L+ + R
Sbjct: 213 GRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDR 268
Score = 38.5 bits (90), Expect = 0.011
Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 180 RLATEVEDLQLEVDRANAIANAAE-------KKAKAIDKIIGEWKLKVDDLAAELDASQK 232
L ++V L+ EV R A A++ + + K + + +
Sbjct: 85 ELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRA 144
Query: 233 ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARK- 291
+ ++ +L+ Q QL+A+R++ + +++E++ R + E +
Sbjct: 145 QLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR--------RKLKEKGLVSRL 196
Query: 292 ---RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
LE E+ E Q L EA LE + ++ QLE Q ++ + ++L + Q
Sbjct: 197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEV---LEELTEAQA 253
Query: 349 ALEEEQRARDDAREQLGIVERRA 371
L E + + AR++L + R+
Sbjct: 254 RLAELRERLNKARDRLQRLIIRS 276
Score = 38.1 bits (89), Expect = 0.014
Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 61/238 (25%)
Query: 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ-----ATSISAAKRKLE 424
A+A + E + R E A R +AE + A E ++L + I + E
Sbjct: 80 EADAAELESQVLRLEAEVA---RLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFE 136
Query: 425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIK 484
TL + L+ +L + K E + L +L + + + KL++
Sbjct: 137 SRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE------- 189
Query: 485 ELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELS 544
K + +L + ELE E A+AQ L + E ++ L
Sbjct: 190 -----------------KGLVSRL--ELLELERER-------AEAQGELGRLEAELEVLK 223
Query: 545 FQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEER 602
Q +E + + QQ +T++ ++ L + +AQ L E ER
Sbjct: 224 RQIDELQL----------ERQQIEQTFREEV----------LEELTEAQARLAELRER 261
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 43.2 bits (102), Expect = 6e-04
Identities = 78/352 (22%), Positives = 134/352 (38%), Gaps = 39/352 (11%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR-- 355
E++ L E A EQ +A+ EL + + LK V L E+
Sbjct: 605 AEMEDWLAERATAREQVRA-YFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAE 663
Query: 356 ----ARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
AR E R+A+ L L ++ + LE+A+ +A++ L EQ +
Sbjct: 664 LLELARQLLEEAEKQAARKAS-LDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALL 722
Query: 412 QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT 471
+A A + L ++ E L A + ++ D AR +E+ A A
Sbjct: 723 EAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALA-EAVA 781
Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
E L + + L+ RL A + A A +KL + + E E E+ +A
Sbjct: 782 PEMLGTPADETARALKQRLKRARDTAA-----AAEKLAEEIEEAEKEVS-------EAAA 829
Query: 532 NLRKTERRIKELSFQA----EEDRKNHERMQDLVDKLQQKIKTYKRQIEEA--------- 578
L + E R+ L A E+ D +L+++I +R + A
Sbjct: 830 ALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEAL 889
Query: 579 -EEIAALNL----AKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSS 625
E AAL+ A+ + +++EE EE + Q V + + + GS+
Sbjct: 890 VAEAAALDPDELPARLEELARDIEELEEELNELAQEVGAAKQELARMDGGST 941
Score = 40.1 bits (94), Expect = 0.005
Identities = 94/485 (19%), Positives = 163/485 (33%), Gaps = 36/485 (7%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
L L EAEE + +L +++ LEK KQRL L L +R A
Sbjct: 178 DLVKALDEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALEQQLAA-------- 229
Query: 212 IIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVR--RENKNLADEV 269
+GE D + ++ E R L L E Q +L+ + E A +
Sbjct: 230 -LGEVIDLPPDAVERYEEARAELRAARRNLELLTERLEALQAELDEISLDEELLAQAAAI 288
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
+ L Q GE E+ E E + A A + + ++ L S A
Sbjct: 289 EALHQQRGE----YRNAEQDLPDREGEIANAREAAAALLAQIGPDADEEAVESLRPSLAA 344
Query: 330 AE-AQKNIKRYQ---QQLKDVQTALEEEQRARDDAREQLGIVE--------RRANALQNE 377
E + KR + Q LK + ALEE +R R QL + R A A
Sbjct: 345 KETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTVPEPLRAALADALR 404
Query: 378 LEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL 437
+ L ++ A+ ELA A +L + A ++Q + +E+
Sbjct: 405 AGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKEAEEI 464
Query: 438 LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA 497
+ + ++ + D L +LR + A ++ +
Sbjct: 465 MQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRRGYAL 524
Query: 498 LKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERM 557
L+ A + E ++L R A L+ ++ + + E + + +
Sbjct: 525 LEPTASAY----EEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLE---QLEKEL 577
Query: 558 QDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKG 617
+ L L + ++ Q A L A+ E A E+ +A +++
Sbjct: 578 EVLELALAALREAWQAQWAAAG--LPLTPAEMEDWLAERATAREQVRAYFKARAELDALL 635
Query: 618 GSVAR 622
AR
Sbjct: 636 DRRAR 640
Score = 36.7 bits (85), Expect = 0.058
Identities = 63/340 (18%), Positives = 126/340 (37%), Gaps = 31/340 (9%)
Query: 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALE 305
+++ + L+ E NL E++ L E + E + L E+ L+ L
Sbjct: 174 RTWKDLVKALDEAEEELANLRKELRQL-----EKEKQRLERLRRLLPLLAERKALEQQLA 228
Query: 306 EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL-----EEEQRARDDA 360
++ + V R + E A++N++ ++L+ +Q L +EE A+ A
Sbjct: 229 ALGEVIDLPPDAVERYE-EARAELRAARRNLELLTERLEALQAELDEISLDEELLAQAAA 287
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
E L ++ +N ++ + R A LA +E + ++ S A
Sbjct: 288 IEAL---HQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDADEEAVESLRPSLAA 344
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
++ EL+ LD+ L A+++ E+ + R ++RA+ AL
Sbjct: 345 KETVTELEKRKEALDQALKSARDALEERE-------RELKQVRAQLA----------ALP 387
Query: 481 TQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRI 540
T +R A+ A+ LEQ V + EL R + +L +
Sbjct: 388 TVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALP 447
Query: 541 KELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
+ Q + K E + + + ++ + +E E
Sbjct: 448 VPSAEQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLEL 487
Score = 33.6 bits (77), Expect = 0.43
Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 9/267 (3%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
+ L RL +AE +E ++ + + + D LE + A A +
Sbjct: 682 KASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALEL 741
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAY--EEAQEQLEAVRRENKNLAD 267
+ I E DDL + A +++ + E+ L A E + R K
Sbjct: 742 LQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADETARALKQRLK 801
Query: 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ 327
+D + I E EK DE +A L A + L A +E S
Sbjct: 802 RARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSD 861
Query: 328 ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ 387
E +K I ++ L L E + A + L LEE + +E+
Sbjct: 862 TYRELRKRIAALERTLVRAGGGLSLEALVAEAAALD-------PDELPARLEELARDIEE 914
Query: 388 ADRGRRQAETELADAHEQLNELSAQAT 414
+ + E+ A ++L + +T
Sbjct: 915 LEEELNELAQEVGAAKQELARMDGGST 941
Score = 29.7 bits (67), Expect = 7.5
Identities = 67/386 (17%), Positives = 115/386 (29%), Gaps = 35/386 (9%)
Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE 306
A ++L+ + E + + + + D + E+ RK L + E Q
Sbjct: 151 EINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLERL 210
Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366
E K L QL + D EE + AR L +
Sbjct: 211 RRLLPLLAERKALEQQLA----------ALGEVIDLPPDAVERYEEARAELRAARRNLEL 260
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
+ R ALQ EL+E E A A E L++ + + EGE
Sbjct: 261 LTERLEALQAELDEISLDEELL---------AQAAAIEALHQQRGEYRNAEQDLPDREGE 311
Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL 486
+ LL + + +A A ++ EK ++AL+ +K
Sbjct: 312 IANAREAAAALLAQIGPDAD------EEAVESLRPSLAAKETVTELEKRKEALDQALKSA 365
Query: 487 QIRLDEAENN--------ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER 538
+ L+E E A + L + + D + A Q+
Sbjct: 366 RDALEERERELKQVRAQLAALPTVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRE 425
Query: 539 RIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKR--QIEEAEEIAALNLAKFRKAQQEL 596
+ LS E + V +Q K +I +A+ L + + + L
Sbjct: 426 LAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETL 485
Query: 597 EEAEERADLAEQAVSKIRTKGGSVAR 622
E D A ++ R
Sbjct: 486 ELQLRHLDAAGAVPTEEEVAAARARR 511
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 42.6 bits (101), Expect = 7e-04
Identities = 76/361 (21%), Positives = 142/361 (39%), Gaps = 73/361 (20%)
Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDD 359
L +A A + + ++AQL+ A K + + K VQ LE+ D
Sbjct: 22 LSSAFARAASNGDLPTEADVQAQLD-------ALNKQKLLEAEDKLVQQDLEQTLALLDK 74
Query: 360 AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ---ATSI 416
Q + E E+ +Q L QA RQA+ EL + +E + + S+
Sbjct: 75 IDRQ-----------KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL 123
Query: 417 SAAKRKLE---GELQTLHSDLDE---LLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
+ +L +LQ +DL E L + E+A+ A+ ++ ++R +
Sbjct: 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183
Query: 471 TQEK-----LRKALETQIK--ELQIRLDEAE---NNALK--GGKK------AIQKLEQRV 512
K R L+ + Q L N L+ K+ IQ+LE ++
Sbjct: 184 VGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQL 243
Query: 513 RELENELDGEQRRHADAQKNLRKTER-----RIKELSFQAEEDRKNHERMQDLV---DKL 564
+ L+ ++ +R ++K +++ + RI+ A+E N + Q L+ +KL
Sbjct: 244 QLLQEAIN--SKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKL 301
Query: 565 ----QQKIKTYKRQIEEA--------EEIAALN----LAK-FRKAQQELEEAEERADLAE 607
QQ ++ K ++ E+I+ L L++ + QQ L A+ LA+
Sbjct: 302 NTLTQQNLRV-KNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLAD 360
Query: 608 Q 608
+
Sbjct: 361 R 361
Score = 39.1 bits (92), Expect = 0.008
Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 24/254 (9%)
Query: 178 KQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNY 237
+ +L + LE + + E+ +DKI K + + L +L + + R
Sbjct: 42 QAQLDALNKQKLLEAEDKLVQQDL-EQTLALLDKI-DRQKEETEQLKQQLAQAPAKLRQA 99
Query: 238 STELFRLKG-AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVE 296
EL LK EE +E L + L + LDQ+ ++ E L+ +
Sbjct: 100 QAELEALKDDNDEETRETLST--LSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQ 157
Query: 297 KDELQAALEEAEAALEQEENKV-------------LRAQLELSQANAEAQKNIKRYQQQL 343
+ QAAL L+Q N + R L+ QA AQ Q++
Sbjct: 158 PERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQ---NDLQRKS 214
Query: 344 KDVQTALEE-EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
+ T L++ Q+ RD ++ +E + LQ + R L +++ ++A+++ A
Sbjct: 215 LEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKR--LTLSEKTVQEAQSQDEAA 272
Query: 403 HEQLNELSAQATSI 416
Q N L AQ I
Sbjct: 273 RIQANPLVAQELEI 286
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 41.9 bits (99), Expect = 8e-04
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 293 LEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
++ + +AALE+AEAAL E ++ + +L+ A A Q + +D+ A E
Sbjct: 82 FRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIA------QAEAQDLDQAQNE 135
Query: 353 EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ 412
+R + A+ + E A + L+ + L A ++Q L A
Sbjct: 136 LERRAELAQRGVVSREELDRA-RAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVAS 194
Query: 413 ATSISAAKRKLEGELQ 428
A AA + + +L+
Sbjct: 195 AE---AALDQAKLDLE 207
Score = 33.1 bits (76), Expect = 0.56
Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 281 RNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ 340
+ E + L + QA + +AEA + L + EL+Q + +
Sbjct: 98 AALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVS-------R 150
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
++L + AL+ + A A+ ++ L++E+ ++ + A+ QA+ +L
Sbjct: 151 EELDRARAALQAAEAALAAAQAAQ---KQNLALLESEVSGAQAQVASAEAALDQAKLDLE 207
Query: 401 D 401
Sbjct: 208 R 208
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 42.3 bits (99), Expect = 0.001
Identities = 84/453 (18%), Positives = 176/453 (38%), Gaps = 50/453 (11%)
Query: 176 KTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKEC- 234
+T+ L + DLQ ++ A + E + K +K E + +D +KE
Sbjct: 688 QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIP 747
Query: 235 ------RNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK 288
+ + ++ RLK EE + L + E ++ K L + R E++
Sbjct: 748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES----AKVCLTDVTIMERFQMELKD 803
Query: 289 ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
+++ + +LQ + +L + + + + Q +L V +
Sbjct: 804 VERKIAQQAAKLQGS--------------------DLDRTVQQVNQEKQEKQHELDTVVS 843
Query: 349 ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNE 408
+E ++ D +EQ+ ++ + N L++E + L++ + Q E E
Sbjct: 844 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLV-------ELSTE 896
Query: 409 LSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDH 468
+ + I AK + L D E + E KKA + ++++ +
Sbjct: 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGY 956
Query: 469 AQTQEK-LRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHA 527
+ E ++ + +K+ + L+ N L+ +K +K+ + +R + ++D ++ +
Sbjct: 957 MKDIENKIQDGKDDYLKQKETELNTV-NAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015
Query: 528 DAQKNL--RKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE----EAEEI 581
Q NL RK E +KE+ EE+ K H + + LQ K + K + + +
Sbjct: 1016 WLQDNLTLRKRENELKEV----EEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHV 1071
Query: 582 AALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
AL K + + + + E R A K R
Sbjct: 1072 LALGRQKGYEKEIKHFKKELREPQFRDAEEKYR 1104
Score = 31.6 bits (71), Expect = 2.2
Identities = 94/549 (17%), Positives = 204/549 (37%), Gaps = 75/549 (13%)
Query: 173 ALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKV------DDLAAE 226
+ K + + L E+ N + ++ ++ + ++ K+ D ++
Sbjct: 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD 640
Query: 227 LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRREN--------------KNLADEVKDL 272
L+ ++E S + L GA + + + EN L + + DL
Sbjct: 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDL 700
Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEA 332
++ + E K+ E +DE+ ++ ++ +E ++ + +L + N +
Sbjct: 701 QSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI 760
Query: 333 QKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ----- 387
Q+ ++Q + T + EE+ A+ + I+ER Q EL++ + + Q
Sbjct: 761 QRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMER----FQMELKDVERKIAQQAAKL 815
Query: 388 ----ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKN 443
DR +Q E + +L+ + ++ + + ++Q L S +EL +E
Sbjct: 816 QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ 875
Query: 444 SEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK---ALETQIKELQIRLDEAENNALKG 500
++ +L + Q + + ++ LET +++ Q +E ++
Sbjct: 876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935
Query: 501 GKKAIQKLEQRVRELENEL----DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHER 556
KKA K+ +++N D E + L++ E + ++ Q EE K+ E+
Sbjct: 936 NKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEK 995
Query: 557 MQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
+ + + ++Q I T K Q E NL RK + EL+E EE
Sbjct: 996 INEDMRLMRQDIDTQKIQ----ERWLQDNLTL-RKRENELKEVEEELK------------ 1038
Query: 617 GGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASL 676
+++ ++ LEE + ++NH AL +
Sbjct: 1039 -----------------QHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081
Query: 677 EAEAKGKAE 685
+ K E
Sbjct: 1082 KEIKHFKKE 1090
Score = 30.0 bits (67), Expect = 5.4
Identities = 59/337 (17%), Positives = 139/337 (41%), Gaps = 9/337 (2%)
Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE 306
+ E E + + +N D +K+ L +I I +++ K L+ K +++ E
Sbjct: 228 SKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSE 287
Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366
E + E +L+ Q+ ++ +++L D Q LE+ + R ++
Sbjct: 288 LE---LKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTE 344
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELA-DAHEQLNELSAQ-ATSISAAKRKLE 424
+ LQ + + ++ + D + T L D E+ Q + + E
Sbjct: 345 LLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQE 404
Query: 425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIK 484
E +T +L ++ + +E+A + + L + +++ + +++ K + +++
Sbjct: 405 DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464
Query: 485 ELQIRLDE--AENNALKGGKKAIQKLEQR--VRELENELDGEQRRHADAQKNLRKTERRI 540
+L+ D + L+ ++ + K E+ L+ E+ Q AD + LRK ++ +
Sbjct: 465 QLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEM 524
Query: 541 KELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEE 577
++L+ + +D +DK +Q K R +E
Sbjct: 525 EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDE 561
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 41.8 bits (98), Expect = 0.001
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 220 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG 279
++ L +EL ++KE Y L +L+ + EA+ E L E + LLD++
Sbjct: 31 LERLDSELRDAEKERDTYKQYLSKLE-SQNVEISNYEALDSELDELKKEEERLLDEL--- 86
Query: 280 GRNIHEVEKARKRLEVEKDELQAALEEAEAA---LEQEENKVLRAQLELSQANAEAQKNI 336
+ LE E D+L L E + LE EE + LR + N + + N+
Sbjct: 87 -----------EELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNL 135
Query: 337 KRYQQQLKDVQTALEEEQR 355
+ + Q + L++ ++
Sbjct: 136 QSLELQYEYSLNQLDKLRK 154
Score = 32.2 bits (73), Expect = 1.0
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 384 LLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKN 443
LLE+ D R AE E + L++L +Q + L S+LDEL E +
Sbjct: 30 LLERLDSELRDAEKERDTYKQYLSKLESQ--------NVEISNYEALDSELDELKKEEER 81
Query: 444 SEEKAKKAMVDAARLADELR-----AEQDHAQTQEKLRKALETQIKELQI 488
++ ++ + L EL EQ + + LR+ LQ+
Sbjct: 82 LLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQL 131
Score = 31.0 bits (70), Expect = 2.6
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 2/128 (1%)
Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
D LL + A+K + +L ++ E L L+ KE + LDE E
Sbjct: 28 DILLERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELE 87
Query: 495 NNALKGGK--KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRK 552
+ + +L++ +LENE R + +N + E ++ L Q E
Sbjct: 88 ELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLN 147
Query: 553 NHERMQDL 560
++++
Sbjct: 148 QLDKLRKT 155
Score = 29.8 bits (67), Expect = 5.2
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELE 516
RL ELR + T ++ LE+Q E I EA ++ L KK ++L + ELE
Sbjct: 33 RLDSELRDAEKERDTYKQYLSKLESQNVE--ISNYEALDSELDELKKEEERLLDELEELE 90
Query: 517 NELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE 576
E D D L + + ++L + + + + +L+ +++ + Q E
Sbjct: 91 KEDD-------DLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYE 143
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 42.1 bits (99), Expect = 0.001
Identities = 94/368 (25%), Positives = 172/368 (46%), Gaps = 46/368 (12%)
Query: 248 YEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
Y Q QLE ++ EN L D + E + + E L+ DEL + E+
Sbjct: 241 YNLLQSQLEQLQEENFRLEAARDDYRIKCEELEKELAE-------LQHRNDELTSLAAES 293
Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
+A ++E VLR E+ K+ + Q++ + LE+ +D R Q+ ++
Sbjct: 294 QAL--KDEIDVLR----------ESSDKAKKLEAQVETYKKKLED----LNDLRRQVKLL 337
Query: 368 -ERRANALQN--ELEESRQLLEQADRGRRQAET---ELADAHEQLNELSAQATSISAAKR 421
ER A +QN +LEE L++A+ R Q ET ++ + H +L+E S +A + +
Sbjct: 338 EERNAMYMQNTVQLEEE---LKKANAARGQLETYKRQVQELHAKLSEESKKADKLEFEYK 394
Query: 422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALET 481
+LE +L+ L + + LL E + E ++ A+ +A+ + + + L L
Sbjct: 395 RLEEKLEALQKEKERLLAERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAELLP 454
Query: 482 -QIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRI 540
+ +E IRL + EN L+ G++ + +R+ EL+ L+ RR+ + + LR +RI
Sbjct: 455 SEYREKLIRL-QHENKMLRLGQEGSEN--ERITELQQLLEDANRRNNELETQLRLANQRI 511
Query: 541 KELSFQAEEDRKN---HERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELE 597
EL Q E+ +K + L+ K++ + Q+ EA E + +K ++++E
Sbjct: 512 LELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQLHEANE-------ELQKKREQIE 564
Query: 598 EAEERADL 605
E E D
Sbjct: 565 ELEPDQDQ 572
Score = 41.7 bits (98), Expect = 0.001
Identities = 102/432 (23%), Positives = 180/432 (41%), Gaps = 68/432 (15%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
KLQ RLA+ E + NQ K L +++E LQ E R A + K + ++
Sbjct: 217 EKLQERLAQLEGSSLGPNQLG---SKKYNLLQSQLEQLQEENFRLEAARDDYRIKCEELE 273
Query: 211 KIIGEWKLKVDDLAAELDASQ---------KECRNYSTELFRLKGAYEEAQEQLEAVRRE 261
K + E + + D+L + SQ +E + + +L Y++ E L +RR+
Sbjct: 274 KELAELQHRNDELTSLAAESQALKDEIDVLRESSDKAKKLEAQVETYKKKLEDLNDLRRQ 333
Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQ-------------------- 301
K L + + + + + AR +LE K ++Q
Sbjct: 334 VKLLEERNAMYMQNTVQLEEELKKANAARGQLETYKRQVQELHAKLSEESKKADKLEFEY 393
Query: 302 AALEEAEAALEQEENKVLRAQLELSQANAEAQ-KNIKRYQQQLKDVQTALEEEQRARD-- 358
LEE AL++E+ ++L + L + N E + ++ Q D T+ + A +
Sbjct: 394 KRLEEKLEALQKEKERLLAERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAELL 453
Query: 359 --DAREQLGIVERRANALQ--------NELEESRQLLEQADRGRRQAETELADAHEQLNE 408
+ RE+L ++ L+ + E +QLLE A+R + ET+L A++++ E
Sbjct: 454 PSEYREKLIRLQHENKMLRLGQEGSENERITELQQLLEDANRRNNELETQLRLANQRILE 513
Query: 409 LSAQATSISAA--------------KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD 454
L Q + A K KLE L+ LH +EL + + EE +
Sbjct: 514 LQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQLHEANEELQKKREQIEELEPDQDQN 573
Query: 455 AARLADELRA-----EQDHAQTQEKLRKALE---TQIKELQIRLDEAENNALKGGKKAIQ 506
+R EL A ++D +E+ +K +E IK L + + A KK +
Sbjct: 574 LSRKIAELEAALQKKDEDMRAMEERYKKYVEKAREVIKTLDPKQNPASPEIQL-LKKQLT 632
Query: 507 KLEQRVRELENE 518
+ ++R+R LE+E
Sbjct: 633 ERDKRIRHLESE 644
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 41.7 bits (98), Expect = 0.001
Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 20/224 (8%)
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
++ E QA +L L S + + + +K A A+
Sbjct: 196 QKAAEYLRQAAQAGTTGSSSADDLADLLSKFRLDSWDKGSRFTRTEKVEQAATAAAEVPP 255
Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNA--LKGGKKAIQKLEQRVRELENELDG 521
AE D T+E K E +++ LQ ++DE E++ + KA+ ++V E +
Sbjct: 256 AEMD---TEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQ 312
Query: 522 EQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ------- 574
E ++ + +R ++ L + N ++Q LV +++ +Q
Sbjct: 313 ENEEL---EEEYKIKKRTVELL----PDAENNVAKLQALVVASSERLLELAQQWEAHRTP 365
Query: 575 -IEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKG 617
I+E + N K + Q++L+E ++ + E+ S+++TK
Sbjct: 366 LIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKE 409
Score = 34.7 bits (80), Expect = 0.19
Identities = 44/238 (18%), Positives = 89/238 (37%), Gaps = 36/238 (15%)
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
D+ L + + D + E+ A E ++ + ++ E EL
Sbjct: 217 DDLADLLSKFRLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQ 276
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDEL--LNEAKNSEEKAKKAMVDAARLADE 461
EQ++EL + + + + L +++ ++ +L + NE E K KK V+
Sbjct: 277 EQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVE------- 329
Query: 462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDG 521
L E + +LQ + + + +L Q+ L
Sbjct: 330 -------------LLPDAENNVAKLQALVVASSER--------LLELAQQWEAHRTPLID 368
Query: 522 EQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
E R + +N + E Q +E +K ++++L +LQ K + YK+ ++E E
Sbjct: 369 EYRSLKEKNRN------KEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLDEYE 420
Score = 30.1 bits (68), Expect = 5.0
Identities = 34/208 (16%), Positives = 76/208 (36%), Gaps = 10/208 (4%)
Query: 160 AEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLK 219
+ + + L K K T E ++ A + A + K E + +
Sbjct: 215 SADDLADLLSKFRLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTK---EREAE 271
Query: 220 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK---DLLDQI 276
++ L ++D + +E+ L ++ E+L VR+EN+ L +E K ++ +
Sbjct: 272 LEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVELL 331
Query: 277 GEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI 336
+ N+ +++ EL E L E + I
Sbjct: 332 PDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEI 391
Query: 337 KRYQQQLKDVQTALEEEQRARDDAREQL 364
K+ + +++++ E E + ++ +QL
Sbjct: 392 KKLRNKIEEL----ESELQTKEQLYKQL 415
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 41.7 bits (98), Expect = 0.001
Identities = 102/479 (21%), Positives = 191/479 (39%), Gaps = 55/479 (11%)
Query: 166 SLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID------KIIGEWKLK 219
+L+ +++ +K +L ++++ E + NA N ++ K K I E + +
Sbjct: 430 ALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEAR 489
Query: 220 VDDLAAELDASQ--KECRNYSTELFRLKGAYE-----EAQEQLEAVRRENKNLADEVKDL 272
+ DL A+ Q + C + AY+ Q +L+A+ +E K L +E L
Sbjct: 490 IKDLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAAL 549
Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAAL---------------EQEENK 317
Q+ + + E + L E+ L + A+L QEE++
Sbjct: 550 RGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHE 609
Query: 318 ----VLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRA-----RDDAREQLGIVE 368
+L + EL A + I +YQQQ++ Q L + E +
Sbjct: 610 RQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLAT 669
Query: 369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK-RKLEGEL 427
R+ A + + RQ A + R Q T L + Q ++L +++ R++ +
Sbjct: 670 RQQEA---QSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQC 726
Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVD-AARLADELRAEQD---HAQTQEKLRKALETQI 483
+LHS L L + ++ +KA L + +Q A E+ LE
Sbjct: 727 LSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLK 786
Query: 484 KELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ--KNLRKTERRIK 541
+ L+ + +A+ + + Q + R L+ + EQ + AQ + LR+ R
Sbjct: 787 QNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQG 846
Query: 542 ELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL----NLAKFRKAQQEL 596
E+ Q ++D N ++ Q L+ Q+I +Q+E+ + +L KFRK Q L
Sbjct: 847 EIRQQLKQDADNRQQQQALM----QQIAQATQQVEDWGYLNSLIGSKEGDKFRKFAQGL 901
Score = 32.1 bits (73), Expect = 1.4
Identities = 61/282 (21%), Positives = 107/282 (37%), Gaps = 27/282 (9%)
Query: 252 QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKA-RKRLEVEKDELQAALEEAEAA 310
Q+QL ++ L L H ++ R+RL L + +
Sbjct: 386 QQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVA----LHGQIVPQQKR 441
Query: 311 LEQEENKVLRAQLELSQANAEAQKNIKRY---QQQLKDVQTALEEEQRARD----DAREQ 363
L Q + + E +Q NA + +RY QQL DV+T E+E R +D A+ Q
Sbjct: 442 LAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKDLEAQRAQLQ 501
Query: 364 LGIVERRANALQNELEESRQLLEQADRGRRQA--ETELADAHEQLNELSAQATSISAAKR 421
G + + E+ Q LE R E E+ E+ L Q +++ +
Sbjct: 502 AGQPCPLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQ 561
Query: 422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKL--RKAL 479
+ E E Q+L + L + + + + L A+++H + L R L
Sbjct: 562 RDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLLSQRHEL 621
Query: 480 ETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDG 521
+ QI ++ + + Q++EQR ++L L G
Sbjct: 622 QGQIAAHNQQIIQYQ-----------QQIEQRQQQLLTALAG 652
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 40.7 bits (95), Expect = 0.002
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 160 AEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA---NAIANAAEKKAKAIDKIIGEW 216
AE+ E L V +E+ K + +VE + +E+ R NA+ A K + + + + +
Sbjct: 75 AEKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYM-DL 133
Query: 217 KLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276
K ++L +L+ QKE EL L+ YEE QE+L+ + EN L + +K L
Sbjct: 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG-- 191
Query: 277 GEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEE 315
EV +KR + + ++ EE + L +E
Sbjct: 192 --------EVYDLKKRWDELEPGVELPEEELISDLVKET 222
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 41.2 bits (97), Expect = 0.002
Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 11/157 (7%)
Query: 292 RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ---T 348
+LE LQ A+ + + Q EL Q + + Q L
Sbjct: 26 QLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQ---QELAINDQLSQALNQQTERLN 82
Query: 349 ALEEEQRARDDAREQLGIVERRA----NALQNELEESRQLLEQADRGRRQ-AETELADAH 403
AL + R + QL R L+ L SR LL+Q E +
Sbjct: 83 ALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVT 142
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
++ + L A+ I+A + + E + LD++L+
Sbjct: 143 QERDALQAEKAYINALEGQAEQLTAEVRDILDQILDT 179
Score = 37.7 bits (88), Expect = 0.022
Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 16/195 (8%)
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
+V L Q R+ + +E LQ + RQ + + + EL
Sbjct: 3 LAGNNVLQELL--QSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELI 60
Query: 401 DAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLAD 460
+N+ +S A + L L SD D L ++ +
Sbjct: 61 QQELAIND------QLSQALNQQTERLNALASD-DRQLANLLLQLLQSSRT---IREQIA 110
Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
LR ++ + L + + E +AL+ K I LE + +L
Sbjct: 111 VLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQA----EQLT 166
Query: 521 GEQRRHADAQKNLRK 535
E R D + R+
Sbjct: 167 AEVRDILDQILDTRR 181
Score = 33.5 bits (77), Expect = 0.45
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 297 KDELQAALEEAEAALEQEENKVLRA-QLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
+ LQ L+ L E ++ A QL N++ Q+ + ++ + +++E
Sbjct: 6 NNVLQELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELA 65
Query: 356 ARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
D + L R NAL ++ + LL Q + R ++A
Sbjct: 66 INDQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIA 110
Score = 29.7 bits (67), Expect = 7.4
Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHE--------VEKARKRLE 294
+L A + E+L A+ +++ ++ +LL Q+ + R I E + +R L+
Sbjct: 69 QLSQALNQQTERLNALASDDR----QLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQ 124
Query: 295 VEKDELQAALEEAEAA-LEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
L A + E + QE + + + ++ +A+ + + + D E
Sbjct: 125 QLGP-LPEAGQPQEQFEVTQERDALQAEKAYINALEGQAE-QLTAEVRDILDQILDTRRE 182
Query: 354 Q 354
Sbjct: 183 L 183
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 41.1 bits (97), Expect = 0.002
Identities = 56/292 (19%), Positives = 118/292 (40%), Gaps = 48/292 (16%)
Query: 249 EEAQEQLEAVR-RENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL--EVEKDELQAALE 305
E+ +E+L R R+ ++L ++ + LD++ R+ + +V L+ ++
Sbjct: 34 EDLKEELSNERLRKLRSLLTKLSEALDKL----RSYLPKLNPLREEKKKVSVKSLEELIK 89
Query: 306 EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ-----TALEEEQRARDDA 360
+ E LE+ E ++ + E+S+ E IK +Q+++ ++
Sbjct: 90 DVEEELEKIEKEIKELEEEISELENE----IKELEQEIERLEPWGNFDLDLSLLLGFKYV 145
Query: 361 REQLGIV-ERRANALQNELEESRQLLEQADRGRR------------QAETELADAHEQLN 407
+G V E + L+ E + D+G + E EL +
Sbjct: 146 SVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERL 205
Query: 408 ELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQD 467
EL + T S R+++ EL+ + + + LL E K +K + ++ L + L E +
Sbjct: 206 ELEEEGT-PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLA---LYEYLEIELE 261
Query: 468 HAQTQEKLRKALET----------QIKELQIRLDEAENNALKGGKKAIQKLE 509
A+ K K +T ++K+L+ +D+A G ++ +E
Sbjct: 262 RAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATG-----GSAYVEFVE 308
Score = 34.9 bits (81), Expect = 0.16
Identities = 31/183 (16%), Positives = 72/183 (39%), Gaps = 17/183 (9%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQ----LEVDRANAIANA-AEK 204
+ ++ L + E+ I+ L +++ LE + L E+E L+ ++D + +
Sbjct: 88 IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSV 147
Query: 205 KAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKN 264
+ + E D+ S + Y + LK +E +E+L+ + E
Sbjct: 148 FVGTVPEDKLEELKLESDVENVEYISTDKGYVYVV-VVVLKELSDEVEEELKKLGFERLE 206
Query: 265 LADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE 324
L +E ++ + + ++ LE + E ++ LEE + ++ ++L
Sbjct: 207 LEEEGT--PSEL---------IREIKEELEEIEKERESLLEELKELAKKYLEELLALYEY 255
Query: 325 LSQ 327
L
Sbjct: 256 LEI 258
Score = 30.3 bits (69), Expect = 4.3
Identities = 31/222 (13%), Positives = 77/222 (34%), Gaps = 34/222 (15%)
Query: 3 EQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAI 62
+ K + + EE I+ + +++ +EK + L E+ +L+ E+
Sbjct: 63 RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122
Query: 63 ANAAEKKAKAIDKIIGEWK-LKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLD 121
E W + L L + ++++ E ++ ++
Sbjct: 123 IERLEP-----------WGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVEN-VE 170
Query: 122 FINTLYCLLFIPFLNEKSLKH------------PYPLFFPRRKLQARLAEAEETIESLNQ 169
+I+T +++ + K L L + E +E +E + +
Sbjct: 171 YISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEE-GTPSELIREIKEELEEIEK 229
Query: 170 KVIALEKTKQRLATEVEDLQL--------EVDRANAIANAAE 203
+ +L + + LA + + L E++RA A++ +
Sbjct: 230 ERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLK 271
Score = 29.5 bits (67), Expect = 7.7
Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 58/233 (24%)
Query: 359 DAREQLGIVERRANALQNELEESRQLLE--------QADRGRRQAETELADAHEQLNELS 410
R L + + L++ L + L E + + E EL +++ EL
Sbjct: 47 KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELE 106
Query: 411 AQATSISAAKRKLEGELQTLH------SDLDELLN------------------------- 439
+ + + ++LE E++ L DL LL
Sbjct: 107 EEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDV 166
Query: 440 ----EAKNSEEK-------AKKAMVDAARLADELRAEQDHAQTQEK---LRKALETQIKE 485
+ K+ + +L E+ + + L + ++ +++E
Sbjct: 167 ENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEE 226
Query: 486 LQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER 538
++ + + K+ +K + + L L+ E A+A KT++
Sbjct: 227 IEKERESLL----EELKELAKKYLEELLALYEYLEIE-LERAEALSKFLKTDK 274
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 40.7 bits (95), Expect = 0.003
Identities = 70/345 (20%), Positives = 132/345 (38%), Gaps = 38/345 (11%)
Query: 188 LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGA 247
LQ +++ N KK A++ + + + +++ L L S ++ + + +
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSS 200
Query: 248 YEEAQEQLEAVRREN-------KNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDEL 300
E + A+ + L +++ L + E R + + LE K EL
Sbjct: 201 SESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGEL 260
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
+ L++ EE + + QLE Q + L+ +Q LE Q+
Sbjct: 261 KQRLKKMTIQRRDEETERIDLQLENEQLHE-----------DLRTLQERLESSQQKAGLL 309
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
E+L + + EL +SR LE A + ++ LA Q S
Sbjct: 310 GEELASLGSLRDHTIAELHQSR--LESAQMSLQLSQLNLALKEGQ-----------SQWA 356
Query: 421 RKLEGELQTLHSDLDELLN---EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK 477
++ E Q+ +D D + E EE ++ +L EL E+D + Q +
Sbjct: 357 QERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENR 416
Query: 478 ALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGE 522
++++ +R+ + E L+ K Q+L +R LE LD E
Sbjct: 417 RELSELRS-ALRVLQKEKEQLQEEK---QELLDYIRVLELRLDKE 457
Score = 35.7 bits (82), Expect = 0.098
Identities = 57/297 (19%), Positives = 121/297 (40%), Gaps = 38/297 (12%)
Query: 272 LLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE 331
L +Q+ R +++ K LE + ++++ +E+ E AL
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETAL------------------RH 182
Query: 332 AQKNIKRYQQQLKDVQTALEEEQRARD-------DAREQLGIVERRANALQNELEESRQL 384
+ + + ++Q K+ Q++ E R+ + ++++ +E+ L + +E+ ++
Sbjct: 183 STEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRV 242
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNS 444
LE + E + ++L +++ Q + L+ E + LH DL L ++S
Sbjct: 243 LEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESS 302
Query: 445 EEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA-LETQIKELQIRLDEAE--------- 494
++KA + A L LR Q +L A + Q+ +L + L E +
Sbjct: 303 QQKAGLLGEELASLG-SLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERET 361
Query: 495 -NNALKGGKKAIQKLEQRVRELENELDGEQ-RRHADAQKNLRKTERRIKELSFQAEE 549
+ + K IQKL + +LE L E+ +R + + + +LS E
Sbjct: 362 LRQSAEADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRE 418
Score = 35.4 bits (81), Expect = 0.11
Identities = 39/180 (21%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
QL + + LEG++ + S +++L ++S EK ++ L ++ +
Sbjct: 144 QLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEE-------LEEQHKE 196
Query: 465 EQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR 524
Q +++ R AL Q E Q R+ E E + IQ L Q+ +E + L+G Q
Sbjct: 197 AQSSSESMSAERNALLAQRAENQQRILELEQD--------IQTLTQKKQENDRVLEGTQD 248
Query: 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 584
A+ ++ + ++R+K+++ Q ++ +Q ++L + ++T + ++E +++ A L
Sbjct: 249 IEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGL 308
Score = 33.4 bits (76), Expect = 0.41
Identities = 57/276 (20%), Positives = 116/276 (42%), Gaps = 34/276 (12%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
R + Q R+ E E+ I++L QK + R+ +D++ E++R
Sbjct: 215 RAENQQRILELEQDIQTLTQKK----QENDRVLEGTQDIEAELERMK------------- 257
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
GE K ++ + + + E + E +L QE+LE+ +++ L +E+
Sbjct: 258 ----GELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEEL 313
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
L R+ E + RLE ++ L + AL++ +++ + + L Q+
Sbjct: 314 ASL-----GSLRDHTIAELHQSRLESA--QMSLQLSQLNLALKEGQSQWAQERETLRQSA 366
Query: 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQ-----NELEESRQL 384
+ I++ +L ++ L+EE+ R+ +LGI E+ N +Q EL E R
Sbjct: 367 EADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGI-EKDCNRVQLSENRRELSELRSA 425
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
L + + Q + E + + + L + + K
Sbjct: 426 LRVLQKEKEQLQEEKQELLDYIRVLELRLDKEADEK 461
Score = 30.0 bits (67), Expect = 5.5
Identities = 48/260 (18%), Positives = 109/260 (41%), Gaps = 15/260 (5%)
Query: 455 AARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQ---- 510
A L ++L Q K ALE + +++ R+++ E +K + EQ
Sbjct: 138 ATILQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEA 197
Query: 511 --RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLV------- 561
+ E + + A+ Q+ + + E+ I+ L+ + +E+ + E QD+
Sbjct: 198 QSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMK 257
Query: 562 DKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVA 621
+L+Q++K Q + E + + ++L +ER + ++Q + + S+
Sbjct: 258 GELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASL- 316
Query: 622 RGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAK 681
GS + + R + Q++ +L L+E + + S +A + K
Sbjct: 317 -GSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQK 375
Query: 682 GKAEALRMKKKLEADINELE 701
AE L++++ L+ + ++ E
Sbjct: 376 LSAELLKLEEWLQEERSQRE 395
>gnl|CDD|235136 PRK03598, PRK03598, putative efflux pump membrane fusion protein;
Provisional.
Length = 331
Score = 40.3 bits (95), Expect = 0.003
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE-AQKNIKRYQQQLKD----VQT 348
+ QA L+ A EE RA ++ +QA + AQ R QQ L
Sbjct: 87 KANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNR-QQGLWKSRTISAN 145
Query: 349 ALEEEQRARDDAREQLGIVERRANALQN-----ELEESRQLLEQADRGRRQAETELADAH 403
LE + +RD A+ L + + + + ++ +++ L QA QAE L D
Sbjct: 146 DLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQDTE 205
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 40.8 bits (96), Expect = 0.003
Identities = 40/256 (15%), Positives = 96/256 (37%), Gaps = 57/256 (22%)
Query: 304 LEEAEAALEQEENKVLRAQLELSQANA-----------EAQKNIKRYQQQLKDVQTALEE 352
+E E L + E+K+ + + L + ++ I + ++K+V+ LE
Sbjct: 33 CDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLES 92
Query: 353 EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAE-TELADAH---EQLNE 408
++ ++ E L N L+E + L++ + ++ + + +
Sbjct: 93 LEKEINELEEWL-----------NVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLK 141
Query: 409 LSAQATSISAAK---------RKLEGELQTLHSDLDELLNEAKNS--------EEKAKKA 451
L A I+ K R G ++ ++++E L + K + +E K
Sbjct: 142 LGFVAGVINREKLEAFERELWRACRGYIRQ--AEIEEPLEDPKKTVFIIFFVGKEDLDK- 198
Query: 452 MVDAARLADELRAEQ----DHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQK 507
++ D E + + +L + +I+ELQ L++ E +K + K
Sbjct: 199 ---VKKILDSFGFELYDVPETEGERSELISKVNKRIEELQRVLEQTE----SHLEKVLVK 251
Query: 508 LEQRVRELENELDGEQ 523
+ + + ++ E+
Sbjct: 252 IADELLAWDEQVSKEK 267
Score = 36.6 bits (85), Expect = 0.055
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 22/201 (10%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIAN--AAEKKAKA- 208
L+A + E EE +ESL +++ LE+ L E L ++ + ++N K +
Sbjct: 78 DLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGA 137
Query: 209 ----IDKIIGEWKL-KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK 263
+ + G K++ EL + CR Y ++ E+ ++ + + K
Sbjct: 138 EGLKLGFVAGVINREKLEAFERELW---RACRGYIR-QAEIEEPLEDPKKTVFIIFFVGK 193
Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRL----EVEKDELQAALEEAEAALEQ------ 313
D+VK +LD G ++ E E R L +ELQ LE+ E+ LE+
Sbjct: 194 EDLDKVKKILDSFGFELYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIA 253
Query: 314 EENKVLRAQLELSQANAEAQK 334
+E Q+ +A E
Sbjct: 254 DELLAWDEQVSKEKAVYETLN 274
Score = 29.7 bits (67), Expect = 7.1
Identities = 45/271 (16%), Positives = 87/271 (32%), Gaps = 48/271 (17%)
Query: 134 FLNEKSLKHPYPLFFPRRKLQAR----LAEAEETIESLNQKVIALEKTKQRLATEVEDLQ 189
L K K PL K + EE I L ++ +E+ + L E+ +L+
Sbjct: 42 KLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELE 101
Query: 190 LEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK---- 245
EW +D+ + LD + +E S K
Sbjct: 102 -------------------------EWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRG 136
Query: 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK-------D 298
+ + RE + + L + G E+E+ + +
Sbjct: 137 AEGLKLGFVAGVINREK---LEAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGK 193
Query: 299 ELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE-QRAR 357
E +++ + E V + E S+ ++ K I+ Q+ L+ ++ LE+ +
Sbjct: 194 EDLDKVKKILDSFGFELYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIA 253
Query: 358 DDAR---EQLGIVERRANALQNELEESRQLL 385
D+ EQ+ + L N + L
Sbjct: 254 DELLAWDEQVSKEKAVYETL-NLFNYDTKTL 283
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 40.7 bits (95), Expect = 0.003
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 23/156 (14%)
Query: 148 FPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 207
RR+LQ A A T+ ++ +V L T+ L T++E L+ + DRAN A A
Sbjct: 766 ANRRRLQQTNAAA--TLTNILTQVGTLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS 823
Query: 208 AIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD 267
I D+ A A + + L + + A AQE L +R N LA+
Sbjct: 824 LETLI----NAGFTDIKAGQAALEAK---LDEILGKQQQALAAAQESLAIQQRTN-GLAE 875
Query: 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAA 303
R +EK K +E + +++A
Sbjct: 876 -------------RQAAAIEKLAKAVEKQLSSIKSA 898
Score = 38.8 bits (90), Expect = 0.013
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 26/137 (18%)
Query: 14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
+R+LQ A A T+ ++ +V L T+ L T++E L+ + DRAN A A
Sbjct: 768 RRRLQQTNAAA--TLTNILTQVGTLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNSLE 825
Query: 74 DKI--------IGEWKLKVSL-------QLEVDRA-------NAIANAAEKKAKAIDKII 111
I G+ L+ L Q + A AE++A AI+K+
Sbjct: 826 TLINAGFTDIKAGQAALEAKLDEILGKQQQALAAAQESLAIQQRTNGLAERQAAAIEKL- 884
Query: 112 GEWKLKGSLDFINTLYC 128
++ L I + Y
Sbjct: 885 -AKAVEKQLSSIKSAYT 900
Score = 33.0 bits (75), Expect = 0.71
Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 5/139 (3%)
Query: 244 LKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAA 303
K ++ + R + N A + ++L Q+G ++ + L+ ++D
Sbjct: 755 HKSHHDRRATRANRRRLQQTNAAATLTNILTQVGTLSTTQTSLDTQIETLKTQQD-RANQ 813
Query: 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKN----IKRYQQQLKDVQTALEEEQRARDD 359
EA A E + ++ A + + + QQ L Q +L +QR
Sbjct: 814 EAEAHHADNSLETLINAGFTDIKAGQAALEAKLDEILGKQQQALAAAQESLAIQQRTNGL 873
Query: 360 AREQLGIVERRANALQNEL 378
A Q +E+ A A++ +L
Sbjct: 874 AERQAAAIEKLAKAVEKQL 892
Score = 29.9 bits (67), Expect = 6.7
Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 21/185 (11%)
Query: 388 ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD--LDELLNEAKNSE 445
D RR+ E A A E + ++ A R LQ ++ L +L +
Sbjct: 732 VDTSRRKLLQEQAAAAESVASHGHKSHHDRRATRANRRRLQQTNAAATLTNILTQVGTL- 790
Query: 446 EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI 505
+ +D + L+ +QD A + + A D + + G I
Sbjct: 791 -STTQTSLDTQ--IETLKTQQDRANQEAEAHHA------------DNSLETLINAGFTDI 835
Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
+ + + +E+ G+Q++ A + ++R L AE E++ V+K
Sbjct: 836 KAGQAALEAKLDEILGKQQQALAAAQESLAIQQRTNGL---AERQAAAIEKLAKAVEKQL 892
Query: 566 QKIKT 570
IK+
Sbjct: 893 SSIKS 897
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 40.3 bits (94), Expect = 0.004
Identities = 79/484 (16%), Positives = 173/484 (35%), Gaps = 64/484 (13%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
+ L ++ I + K +RL+ E + + + + N +
Sbjct: 193 KSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKN 252
Query: 211 KIIGEWKLKVDDLAAELDASQK-----------------ECRNYSTELFRLKGAYEEAQE 253
+ E K DL+ EL+ + + RNY + F+ K E ++
Sbjct: 253 RYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQ 312
Query: 254 QLEAVRRENKNLADEVKDL------LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
L + E +K L + + ++ LE + + + L+
Sbjct: 313 ILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS- 371
Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
+E + K+ + + +A + +K + ++ L E D ++ +
Sbjct: 372 ---IESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
Query: 368 ERRANALQNELEESRQLL------------------EQADRGRRQAETELADAHEQLNEL 409
+R AL+ L+E + + E+++ + + E++ E+
Sbjct: 429 NQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREI 488
Query: 410 SAQATSISAAKRKLEGELQTLHS-DLDELLNE---AKNSEEKAKKAMVDAARLAD-ELRA 464
+ I L+ + L S ++++ +NE +++ + + L D +
Sbjct: 489 EIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKY 548
Query: 465 EQDHAQTQ----EKLRKALETQIKEL-QIRLDEAENNALKGG--KKAIQKLEQRVRELEN 517
E+ + + E L + + L I L + E N + KK + LE R++E+E
Sbjct: 549 EEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEI 608
Query: 518 ELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEE 577
D + + K+ R I+ + + + L++KL+ KI YK+QI E
Sbjct: 609 GFP-------DDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAE 661
Query: 578 AEEI 581
+ I
Sbjct: 662 IDSI 665
Score = 31.8 bits (72), Expect = 1.8
Identities = 64/445 (14%), Positives = 173/445 (38%), Gaps = 74/445 (16%)
Query: 219 KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKN---LADEVKDLLDQ 275
++D L + A +K+ + E+ L+ Y++ ++ ++ +R E N L +++K +
Sbjct: 139 EMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLE 198
Query: 276 IGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKN 335
+ + I + EK+ E + L E A + + L++ ++
Sbjct: 199 LENIKKQIADDEKSHSITLKEIERLS---IEYNNA----MDDYNNLKSALNELSSLEDM- 250
Query: 336 IKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANA--------------LQNELEES 381
RY+ ++K ++ L E + +E + N +N++E
Sbjct: 251 KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENK 310
Query: 382 RQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE------GELQTLHSDLD 435
+Q+L D + ++L+ L K + + EL+ D +
Sbjct: 311 KQILSNIDAEINKYH----AIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYN 366
Query: 436 ELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN 495
L ++ ++K ++ + R++ + + + QE A++ ++ E+ ++L + +
Sbjct: 367 SYLKSIESLKKKIEEYSKNIERMSAFI---SEILKIQEIDPDAIKKELNEINVKLQDISS 423
Query: 496 N--ALKGGKKAIQKLEQRVRELENELDGEQ-----------------RRHADAQKN---- 532
+L +A+++ + L+G+ H + +K+
Sbjct: 424 KVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEE 483
Query: 533 -LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ-QKIKTYKRQIEEAEEIAALNLAKFR 590
+R+ E +K++ +E + ++ ++ ++ + K +IE A A
Sbjct: 484 KIREIEIEVKDI----DEKIVDLKKRKEYLESEEINKSINEYNKIESAR-------ADLE 532
Query: 591 KAQQELEEAEERADLAEQAVSKIRT 615
+ ++ E +++ D E+ ++ ++
Sbjct: 533 DIKIKINELKDKHDKYEEIKNRYKS 557
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 40.3 bits (94), Expect = 0.004
Identities = 84/378 (22%), Positives = 167/378 (44%), Gaps = 35/378 (9%)
Query: 225 AELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIH 284
AEL S+ + EL + + ++ AQ +LE R+ LA+ + LD+ E +
Sbjct: 61 AELIRSKSKLIQLENELMQKELEHKRAQIELE---RKASTLAENYERELDRNLELEVRLK 117
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLK 344
+E+ K+ E +E A EEA+ ++ + + L+ Q E EA+++I R +
Sbjct: 118 ALEELEKKAE---NEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKND-- 172
Query: 345 DVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHE 404
L E Q +A +L L++ELEE R+ LE+ + ELA+A +
Sbjct: 173 -----LSEMQCRAQNADTEL-------KLLESELEELREQLEECQK-------ELAEAEK 213
Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
+L L+++ S + K++ + L + E+ + + + R LR
Sbjct: 214 KLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQ--IPELERELAALRE 271
Query: 465 EQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR 524
E ++ ++ + L+ ++++LQ RL+ E ++ + LE +LENEL +
Sbjct: 272 ENRKLRSMKEDNELLKEELEDLQSRLERFE-----KMREKLADLELEKEKLENELKSWKS 326
Query: 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 584
D NLR + + + E+ + E+ + +Q ++T +Q++ + A
Sbjct: 327 LLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQ-LETTLQQLQLERQKAVS 385
Query: 585 NLAKFRKAQQELEEAEER 602
+ + +K + L+ R
Sbjct: 386 EILELKKKLEALKALVRR 403
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 39.8 bits (93), Expect = 0.004
Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 15/172 (8%)
Query: 451 AMVDAARLADELR-AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLE 509
A + L + L+ + Q Q QE+L + ++ RL E + K+A LE
Sbjct: 87 ARLFQPELRERLQESYQKLTQLQEQLEE-----VRNYTGRLKEGRERHFQKSKEA---LE 138
Query: 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
+ + L EL R + L + K ++ R+ E+ D DK +
Sbjct: 139 ETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQQQWREEQEK-YDAADKARAIYA 197
Query: 570 TYKRQIEEAEE--IAALNLAKFR---KAQQELEEAEERADLAEQAVSKIRTK 616
+ E E + +L+ A F+ A++ELE E R A + ++ K
Sbjct: 198 LQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENK 249
Score = 30.6 bits (69), Expect = 3.1
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 295 VEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQ 354
V+K ++ A L + E +E+ QL+ E + ++ Y +LK+ + Q
Sbjct: 80 VKKGQVVARLFQPELRERLQESYQKLTQLQ------EQLEEVRNYTGRLKEGRE--RHFQ 131
Query: 355 RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT 414
++++ E +G + AL E+ + R LL + ++ E+ Q
Sbjct: 132 KSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQQQWREE------QEK 185
Query: 415 SISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEK 474
+A K + LQT +A + + A AE++ + +
Sbjct: 186 YDAADKARAIYALQT----------KADERNLETVLQSLSQADFQLAGVAEKELETVEAR 235
Query: 475 LRKALETQIKELQIRL 490
+++A +I+EL+ +L
Sbjct: 236 IKEARY-EIEELENKL 250
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 38.5 bits (90), Expect = 0.005
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 248 YEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
E Q++L ++ E L +++ +L + E + + +E +RL+ E ++ A
Sbjct: 68 LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127
Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQ 342
EEN+ LR +L + EA + Q+
Sbjct: 128 IEL--DEENRELREELAELKQENEALEAENERLQE 160
Score = 36.9 bits (86), Expect = 0.018
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 217 KLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276
+ ++ +L EL Q+E +L L+ +E +++L + E + L E L +I
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKE----LARI 120
Query: 277 GEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLR 320
+ N E+++ + L E EL+ E EA E+ + R
Sbjct: 121 KQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQR 164
Score = 36.9 bits (86), Expect = 0.018
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
++L ++Q L E Q + +EQL LQ E +E +Q L + + + ELA
Sbjct: 66 ERLPELQQELAELQEELAELQEQL-------AELQQENQELKQELSTLEAELERLQKELA 118
Query: 401 DAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM 452
+ +LSA A + R+L EL L + + L EA+N + +
Sbjct: 119 R----IKQLSANAIELDEENRELREELAELKQENEAL--EAENERLQENEQR 164
Score = 36.5 bits (85), Expect = 0.026
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 382 RQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEA 441
R+ L + + + + ELA+ EQL EL + + LE EL+ L +L + +
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124
Query: 442 KNSEE------KAKKAMVDAARLADELRAEQDHAQTQEKLR 476
N+ E + ++ + + + + L AE + Q E+ R
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
Score = 36.1 bits (84), Expect = 0.028
Identities = 21/107 (19%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 477 KALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKT 536
+ ++ ELQ L E + + +L++++ EL+ E ++ + + L +
Sbjct: 62 PSARERLPELQQELAELQEE--------LAELQEQLAELQQENQELKQELSTLEAELERL 113
Query: 537 ER---RIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
++ RIK+LS A E + + +++ + +L+Q+ + + + E +E
Sbjct: 114 QKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQE 160
Score = 36.1 bits (84), Expect = 0.029
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 380 ESRQLLEQADRGRR--QAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL 437
SR L + R + + ELA+ E+L EL Q + ++L+ EL TL ++L+ L
Sbjct: 54 LSRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERL 113
Query: 438 LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487
E ++ + A ++ ELR E + + +ALE + + LQ
Sbjct: 114 QKELARIKQLSANA-IELDEENRELREELAELKQE---NEALEAENERLQ 159
Score = 35.4 bits (82), Expect = 0.052
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
+ R +L E Q+ + Q++L ++Q L E Q+ + +++L +E L
Sbjct: 60 DTPSARERLP------ELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERL 113
Query: 375 QNELEESRQLLEQA---DRGRRQAETELADAHEQLNELSAQATSIS 417
Q EL +QL A D R+ ELA+ ++ L A+ +
Sbjct: 114 QKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQ 159
Score = 34.2 bits (79), Expect = 0.12
Identities = 18/86 (20%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 523 QRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIA 582
Q+ A+ Q+ L + + ++ EL + +E ++ ++ +++LQ+++ K+ A E+
Sbjct: 72 QQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELD 131
Query: 583 ALNLAKFRKAQQELEEAEERADLAEQ 608
N R+ ++EL E ++ + E
Sbjct: 132 EEN----RELREELAELKQENEALEA 153
Score = 34.2 bits (79), Expect = 0.13
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 402 AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE 461
A E+L EL + +L+ EL L L EL E + +++ + RL E
Sbjct: 64 ARERLPELQQELA-------ELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKE 116
Query: 462 LRAEQDHAQTQEKLRK---ALETQIKELQIRLD--EAENNALKG 500
L + + +L + L ++ EL+ + EAEN L+
Sbjct: 117 LARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQE 160
Score = 30.4 bits (69), Expect = 2.1
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 304 LEEAEAALE--QEENKVLRAQL-ELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
L E + L QEE L+ QL EL Q N E ++ + + +L+ +Q L ++ +
Sbjct: 68 LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSAN- 126
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQ 405
A L E E R+ L + + E E E
Sbjct: 127 ----------AIELDEENRELREELAELKQENEALEAENERLQEN 161
Score = 28.8 bits (65), Expect = 7.0
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 25/120 (20%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
+LQ LAE +E + L +++ L++ Q L E+ L+ E++R ++ +
Sbjct: 69 PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAI 128
Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
++ + L+ E +++ EA+ EN+ L + +
Sbjct: 129 EL----------------DEENR---------ELREELAELKQENEALEAENERLQENEQ 163
Score = 28.4 bits (64), Expect = 9.0
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 436 ELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN 495
E L E + + ++ + + EL+ E + + LE +++ LQ L
Sbjct: 66 ERLPELQQELAELQEELAELQEQLAELQQENQELKQE---LSTLEAELERLQKELAR--- 119
Query: 496 NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIK 541
+K +L++ REL EL ++ + + + + +
Sbjct: 120 --IKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 39.1 bits (92), Expect = 0.007
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
AE+ +E ++ +E KE + EA A + K +LE+ ++E NEL +
Sbjct: 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLE 82
Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKN-HERMQDLVDKLQQKIKTYKRQIEEAEEIA 582
RR ++ L + + + E+ K + ++L +K ++ + Q EE E I+
Sbjct: 83 RRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERIS 142
Query: 583 ALNLAKFRKAQQELEEAEERADLAE 607
L + ++ E E E R + A+
Sbjct: 143 GLTQEEAKEILLEEVEEEARHEAAK 167
Score = 30.7 bits (70), Expect = 2.9
Identities = 41/188 (21%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 289 ARKRLEVEKDELQAALEEAE-AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ 347
A K+L ++ + +EEA+ A ++ +L A+ E+ + AE ++ +K + +L+ ++
Sbjct: 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLE 82
Query: 348 TAL--EEEQRAR--DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
L EE R + ++ +E++ L N+ + + E+ + + EL
Sbjct: 83 RRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL---- 138
Query: 404 EQLNELS---AQATSISAAKRKLEGELQTLHSDLDELLNEAK-NSEEKAKKAMVDA-ARL 458
E+++ L+ A+ + + + E L +++E EAK +++KAK+ + A R
Sbjct: 139 ERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEE---EAKEEADKKAKEILATAIQRY 195
Query: 459 ADELRAEQ 466
A + AE
Sbjct: 196 AGDHVAET 203
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 39.4 bits (93), Expect = 0.007
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKL 423
I+E + + E+ +L+ + R+ E + +A L E + K KL
Sbjct: 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560
Query: 424 EGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQI 483
+ E L + ++ EA+ + ++AKK A + ELR Q K + +E +
Sbjct: 561 QEEEDKLLEEAEK---EAQQAIKEAKKE---ADEIIKELRQLQKGGYASVKAHELIEAR- 613
Query: 484 KELQIRLDEAENNALKGGKKAIQ-KLEQRVR 513
K L ++ E K +K + K+ V+
Sbjct: 614 KRLNKANEKKEKKKKKQKEKQEELKVGDEVK 644
Score = 39.0 bits (92), Expect = 0.009
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 435 DELLNEAKN--SEEKAKKAMVDAARLADELRAEQDHAQTQ------EKLRKALETQIKEL 486
+ ++ EAK E+K K + A+ E EQ + + EKL++ LE + ++L
Sbjct: 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560
Query: 487 QIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ 546
Q D+ A K ++AI++ ++ E+ EL Q+ + K + +
Sbjct: 561 QEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVK------------AHE 608
Query: 547 AEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNL 586
E RK + + +K ++K K + +++ +E+ L+L
Sbjct: 609 LIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSL 648
Score = 38.3 bits (90), Expect = 0.014
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
I LE+ RELE + +A+ L++ E+ +EL + E K E L+++
Sbjct: 522 IASLEELERELEQKA-------EEAEALLKEAEKLKEELEEKKE---KLQEEEDKLLEEA 571
Query: 565 QQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAE 607
+++ ++ I+EA++ A + + R+ Q+ + + +L E
Sbjct: 572 EKE---AQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIE 611
Score = 37.1 bits (87), Expect = 0.034
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 21/121 (17%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
E LE + RE + A+E + LL E EK ++ LE +K++LQ ++
Sbjct: 519 NELIASLEELERELEQKAEEAEALLK----------EAEKLKEELEEKKEKLQEEEDKLL 568
Query: 309 AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTA-----LEEEQRARDDAREQ 363
E+E + ++ +A EA + IK +Q K + L E ++ + A E+
Sbjct: 569 EEAEKEAQQAIK------EAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEK 622
Query: 364 L 364
Sbjct: 623 K 623
Score = 33.6 bits (78), Expect = 0.37
Identities = 28/150 (18%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
EN + A+ + + + + I ++ ++++ EE + +A + +E + L
Sbjct: 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560
Query: 375 QNELEESRQLLEQ-ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
Q E ++ + E+ A + ++A+ E + ++L +L + A EL
Sbjct: 561 QEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAH-----ELIEARKR 615
Query: 434 LDELLNEAKNSEEKAKKAMVDAARLADELR 463
L++ NE K ++K +K + ++ DE++
Sbjct: 616 LNK-ANEKKEKKKKKQKEKQEELKVGDEVK 644
Score = 32.1 bits (74), Expect = 1.2
Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 31/185 (16%)
Query: 1 MGEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN 60
+GE ++LN+L L+ E E+ E + EK K+ L + E LQ E
Sbjct: 511 IGEDKEKLNELI--ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE--EDK 566
Query: 61 AIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSL 120
+ A ++ +AI + E ++ +L + A+ + K + +
Sbjct: 567 LLEEAEKEAQQAIKEAKKEAD-EIIKELRQLQKGGYASVKAHELIEARKRLNK------- 618
Query: 121 DFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEET-IESLNQKVIALEKTKQ 179
NEK K + +L+ +E SL QK L
Sbjct: 619 --------------ANEKKEKKKKKQKEKQEELK----VGDEVKYLSLGQKGEVLSIPDD 660
Query: 180 RLATE 184
+ A
Sbjct: 661 KEAIV 665
Score = 31.3 bits (72), Expect = 1.9
Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 542 ELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF-RKAQQELEEAE 600
EL + E+ + E + +KL+++ + + E+ +E L + ++AQQ ++EA+
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEE---LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583
Query: 601 ERADLAEQAVSKIRTKGGS 619
+ AD + + +++ G +
Sbjct: 584 KEADEIIKELRQLQKGGYA 602
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 38.8 bits (90), Expect = 0.009
Identities = 29/173 (16%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKD 345
V R ++++ E Q + A+ E+ + K Q++ +A +A +Q +
Sbjct: 194 VNFRRDMTDLKERESQEDAKRAQQLKEELDKK----QIDADKAQQKADFAQDNADKQRDE 249
Query: 346 VQTALEEEQRARDDAREQLGIVERR-ANALQNELEESRQLLEQADRGRRQAETELADAHE 404
V+ +E + A +++ A + E+E+++ +++ D +A+ A
Sbjct: 250 VRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAF--- 306
Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAAR 457
+L ++ + E E Q + E L + K E ++ + A
Sbjct: 307 ---DLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAI 356
Score = 30.4 bits (68), Expect = 3.6
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN 532
E LR+ E + + D E + + K+A Q+L++ + + + + D Q++ AQ N
Sbjct: 184 EALREDNEKGVNFRRDMTDLKERESQEDAKRA-QQLKEELDKKQIDADKAQQKADFAQDN 242
Query: 533 LRKTERRIKELSFQAE------------EDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
K +++ +A+ ED++ E + ++K Q +IK + +A++
Sbjct: 243 ADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKD 302
Query: 581 IAALNLAKFRKAQQELEEAEE 601
A +L + KA ++ E +E
Sbjct: 303 HKAFDLKQESKASEKEAEDKE 323
Score = 29.6 bits (66), Expect = 7.4
Identities = 43/234 (18%), Positives = 93/234 (39%), Gaps = 21/234 (8%)
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
K V+ E+ ++ + R+ + ER + ++ ++ L++ +A+ + A
Sbjct: 181 KVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQ 240
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
+ ++ + + L T D+ + E + E +KA ++ + +E
Sbjct: 241 DNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKRE--IEKAQIEIKKNDEEAL 298
Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
+DH L++ + KE + + EA+ + + +QK + +V L+ +
Sbjct: 299 KAKDHKA--FDLKQESKASEKEAEDKELEAQKK-REPVAEDLQKTKPQVEAQPTSLNEDA 355
Query: 524 RRHA---------DAQKNLR-------KTERRIKELSFQAEEDRKNHERMQDLV 561
+ D NL KTE R++E + Q R +ER +DLV
Sbjct: 356 IDSSNPVYGLKVVDPITNLSELVLIDLKTEVRLRESAQQTIRRRGLYEREKDLV 409
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 39.2 bits (91), Expect = 0.010
Identities = 41/274 (14%), Positives = 99/274 (36%), Gaps = 20/274 (7%)
Query: 257 AVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE--AEAALEQE 314
A+ E+ +L+D + L + ++ E + + ++ D+L+AA++ + A +
Sbjct: 490 ALGIEDGDLSDAERRLRAA-QDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLR 548
Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
N A+ Q++++ Q++++ RD A++ L +++ N L
Sbjct: 549 NNPQQLARPLDPNTKVLRQQDLQNMMDQIENLA-----RSGDRDQAKQLLSQLQQMMNNL 603
Query: 375 QNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
Q Q + Q +L + + +L + + +R+ + D
Sbjct: 604 QMGQPGQGQQMGDQSGDMEQQMNKLGELMRKQQQLRDETFKLDQDQRR----DRMRGQDG 659
Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
++ + ++ L D LR Q + + L ++ EL +
Sbjct: 660 EQNFGDDMPQQDGQPNG---QPNLHDRLRKLQ-QEEAKRGLGQSQGGLKGELGQLGQGLQ 715
Query: 495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHAD 528
N ++ GK +Q + + + D
Sbjct: 716 NLGIQPGK----GFDQADSAMGDAEGALGDGNGD 745
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 38.6 bits (90), Expect = 0.010
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 313 QEENKVLRAQLELSQAN-AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRA 371
K L+A L +QA+ A AQ + Q L QTA Q A A+++L A
Sbjct: 253 PNSLKALQAALATAQADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKEL------A 306
Query: 372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAA 419
NA L+ ++ L A AE LA A E L L+A AA
Sbjct: 307 NAQAQALQTAQNNLATAQAALANAEARLAKAKEALANLNADLAKKQAA 354
Score = 30.8 bits (70), Expect = 2.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANA----EAQKNIKRYQQQLKDVQTALEEE 353
+ QAAL A+ A + + AQ EL+ A A AQ N+ Q L + + L +
Sbjct: 278 NTAQAALTTAQTAYAAAQAALATAQKELANAQAQALQTAQNNLATAQAALANAEARLAKA 337
Query: 354 QRARDDA 360
+ A +
Sbjct: 338 KEALANL 344
>gnl|CDD|169692 PRK09174, PRK09174, F0F1 ATP synthase subunit B'; Validated.
Length = 204
Score = 37.5 bits (87), Expect = 0.011
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 365 GIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE 424
GI+E R + + +L+++ +L ++AD E ELA A + + ++ A AAK K E
Sbjct: 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAR--EAAKAKAE 137
Query: 425 GELQTLHSDLDELLNEAKNSEEKAK-KAMVDAARLADELRAE 465
E + + L++ L EA+ K KAM D +A+E A
Sbjct: 138 AERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAA 179
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 37.9 bits (89), Expect = 0.012
Identities = 66/283 (23%), Positives = 133/283 (46%), Gaps = 29/283 (10%)
Query: 310 ALEQEENKVLRAQLELS--QANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
LEQ+ NK L A++E + +AE + Y+Q++++++ L+E R + ++
Sbjct: 22 FLEQQ-NKELEAKIEELRQKKSAEPSRLYSLYEQEIRELRKQLDELTNERARLQLEID-- 78
Query: 368 ERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGEL 427
L+ E+ R+ E R+ AE ++ + L+E + + L+ EL
Sbjct: 79 -----NLRLAAEDFREKYEDELNLRQSAENDIVGLRKDLDEATLARVDLEMKIESLQEEL 133
Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVDAARLAD------ELRA--EQDHAQTQEKLRKAL 479
L + +E + E ++ + +DAAR D E+RA E+ + +++ +
Sbjct: 134 AFLKKNHEEEVRELQSQIQGQVNVEMDAARKLDLTKALAEIRAQYEELAEKNRQEAEEWY 193
Query: 480 ETQIKELQIRLDEAENN--ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTE 537
+++++ELQ A N AL+ K+ I +L ++++ LE EL +++ A ++ L + E
Sbjct: 194 KSKLEELQ---QAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAELE 250
Query: 538 RRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
R E + + +L ++LQQ RQ+ E +E
Sbjct: 251 ERY------ELELADYQDTISELEEELQQLKAEMARQLREYQE 287
Score = 29.5 bits (67), Expect = 6.5
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 37/287 (12%)
Query: 170 KVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDA 229
KV LE+ + L ++E+L+ + + ++ I E + ++D+L E
Sbjct: 19 KVRFLEQQNKELEAKIEELRQKKSA------EPSRLYSLYEQEIRELRKQLDELTNERAR 72
Query: 230 SQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIH----E 285
Q E N + YE+ ++ + L ++ + + I E
Sbjct: 73 LQLEIDNLRLAAEDFREKYEDELNLRQSAENDIVGLRKDLDEATLARVDLEMKIESLQEE 132
Query: 286 VEKARKRLEVEKDELQAALE-----EAEAALEQEENKVL---RAQLE----LSQANAEAQ 333
+ +K E E ELQ+ ++ E +AA + + K L RAQ E ++ AE
Sbjct: 133 LAFLKKNHEEEVRELQSQIQGQVNVEMDAARKLDLTKALAEIRAQYEELAEKNRQEAEEW 192
Query: 334 KNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRR 393
Y+ +L+++Q A A A+E++ + R+ +L+ EL+ ++ +R
Sbjct: 193 -----YKSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLA 247
Query: 394 QAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
+ E + ++ LE ELQ L +++ L E
Sbjct: 248 ELEERYELELADYQDTISE----------LEEELQQLKAEMARQLRE 284
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 38.1 bits (89), Expect = 0.014
Identities = 35/197 (17%), Positives = 80/197 (40%), Gaps = 15/197 (7%)
Query: 248 YEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE- 306
Y +++ E V ++ + E + +I E + E KR + + E
Sbjct: 126 YPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLES 185
Query: 307 --AEAALEQEENKVL-RAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE----QRARDD 359
A + E +VL + ++ + + + ++++ Q K + +L E ++ D
Sbjct: 186 LIDAAEWKLEVERVLPQLKVTIKTDAKDWRSHLEQMHQLKKAISKSLPETKQYLKKLSQD 245
Query: 360 AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAA 419
+ L + R L N+LE+ Q R+A L+ E+ N+ S + ++
Sbjct: 246 LSKALEKISSREKHLNNQLEQLVQEY-------REARRTLSQVQEKYNQASQGVSELTRE 298
Query: 420 KRKLEGELQTLHSDLDE 436
++ EL+ + +++E
Sbjct: 299 LNEISEELEQVKQEMEE 315
Score = 30.1 bits (68), Expect = 3.8
Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 29/231 (12%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
V++D+ + LEE E +E EE V + ++ + + + E
Sbjct: 135 NVDEDDAEIILEEVEEEVEIEE--VDDDEGTQETKYKRGDTSLTPQAKDVLESLIDAAEW 192
Query: 354 QRARDDAREQLGIVERRANALQNELEES----RQLLEQADRGRRQAETELADAHEQLNEL 409
+ VER L+ ++ R LEQ + ++ L + + L +L
Sbjct: 193 KLE----------VERVLPQLKVTIKTDAKDWRSHLEQMHQLKKAISKSLPETKQYLKKL 242
Query: 410 SAQATS----ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465
S + IS+ ++ L +L+ L + E +EK +A + L EL
Sbjct: 243 SQDLSKALEKISSREKHLNNQLEQLVQEYREARRTLSQVQEKYNQASQGVSELTREL--- 299
Query: 466 QDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELE 516
+ E+L + ++ +++E + ++ + L K+AI KL++ +++++
Sbjct: 300 ---NEISEELEQ-VKQEMEERGASM--SDGSPLVKIKQAITKLKEEIKQMD 344
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 38.5 bits (90), Expect = 0.015
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 29/165 (17%)
Query: 128 CLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQ-------- 179
L + + + ++ +L+A L EE +E QK+ EK K
Sbjct: 301 ALEELESILDTEKENSEF-KLDVEELKALLEALEEILEKNLQKLE--EKLKDPSTSIELE 357
Query: 180 RLATEVEDLQLEVDRANA--------IANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQ 231
+ +E + +D N I N ++K KA K+ W V +L ++DA Q
Sbjct: 358 SITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAKKKL---WLHLVAELKEDIDAYQ 414
Query: 232 KECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276
KE + L+ A +++++ + E K L E+K+L Q+
Sbjct: 415 KEKKG-------LEKAINSLEKEIKQLEAEIKALEKEIKELEKQL 452
Score = 36.1 bits (84), Expect = 0.075
Identities = 36/201 (17%), Positives = 83/201 (41%), Gaps = 21/201 (10%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
+L +L E + ES +K ALE+ + L TE E+ + ++D A + + ++K
Sbjct: 282 ELIEQLEELIDKYESHIEK--ALEELESILDTEKENSEFKLDVEELKALLEALE-EILEK 338
Query: 212 IIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKD 271
+ + + K+ D + ++ + + + + + E + + NL E
Sbjct: 339 NLQKLEEKLKDPSTSIELE-----SITDLIESINDIIDAINELIREHNEKIDNLKKEKNK 393
Query: 272 LLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE 331
++ E+++ + EK L+ A+ E ++Q E ++
Sbjct: 394 AKKKLWLHLVA--ELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEI-----------KA 440
Query: 332 AQKNIKRYQQQLKDVQTALEE 352
+K IK ++QL +++ +E
Sbjct: 441 LEKEIKELEKQLTNIEPTADE 461
Score = 35.8 bits (83), Expect = 0.089
Identities = 29/186 (15%), Positives = 78/186 (41%), Gaps = 11/186 (5%)
Query: 202 AEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 261
+ D+ E ++++L + ++ ++ + + E + +E ++
Sbjct: 269 KAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKAL 328
Query: 262 NKNLADEVKDLLDQIGEGGRNIH---EVEKARKRLEVEKDELQAALEEAE------AALE 312
+ L + ++ L ++ E ++ E+E +E D + A E L+
Sbjct: 329 LEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLK 388
Query: 313 QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
+E+NK + +L L E +++I YQ++ K ++ A+ ++ ++ +E+
Sbjct: 389 KEKNK-AKKKLWLHLVA-ELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIK 446
Query: 373 ALQNEL 378
L+ +L
Sbjct: 447 ELEKQL 452
Score = 33.8 bits (78), Expect = 0.38
Identities = 39/192 (20%), Positives = 86/192 (44%), Gaps = 13/192 (6%)
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLN-ELSAQATSI 416
++ +E + +E + ++ +E++ + LE + +E E+L L A +
Sbjct: 278 EEYQELIEQLEELIDKYESHIEKALEELESILD-TEKENSEFKLDVEELKALLEALEEIL 336
Query: 417 SAAKRKLEGELQTLHS-----DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT 471
+KLE +L+ + + +L+ + + + + + D L+ E++ A+
Sbjct: 337 EKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAK- 395
Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
+KL L ++KE +A KG +KAI LE+ +++LE E+ ++ + +K
Sbjct: 396 -KKLWLHLVAELKEDI----DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEK 450
Query: 532 NLRKTERRIKEL 543
L E E+
Sbjct: 451 QLTNIEPTADEI 462
Score = 31.9 bits (73), Expect = 1.5
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
+ + E I N+K+ L+K K + ++ V +A +K+ K ++K
Sbjct: 365 SINDIIDAINELIREHNEKIDNLKKEKNKAKKKLW--LHLVAELKEDIDAYQKEKKGLEK 422
Query: 212 IIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 257
I + ++ L AE+ A +KE + +L ++ +E + L+A
Sbjct: 423 AINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTADEINKLLKA 468
Score = 31.1 bits (71), Expect = 2.3
Identities = 61/360 (16%), Positives = 138/360 (38%), Gaps = 69/360 (19%)
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG-------------IVERRA 371
L + N E + I+ +++LK ++ +E+ + + E+L + ++
Sbjct: 86 LGEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Query: 372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLN--ELSAQATSISAAKRKLEGELQT 429
+ L L+ ++ ++ ++ + +A L+ EL A+ ++ ++ + L
Sbjct: 146 SNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTL 205
Query: 430 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQ----------DHAQ-------TQ 472
D DE+ + + V + L + L +
Sbjct: 206 SVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTIT 265
Query: 473 EKLRKALE----TQIKELQIRLDEAENNALKGGKKAIQKLEQRVR-ELENE---LDGEQ- 523
E+ + LE + +EL +L+E + +KA+++LE + E EN LD E+
Sbjct: 266 EERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEEL 325
Query: 524 RRHADA-----QKNLRKTERRIKELS--FQAEEDRKNHERMQDLVDKLQQKIKTYKRQI- 575
+ +A +KNL+K E ++K+ S + E E + D++D + + I+ + +I
Sbjct: 326 KALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKID 385
Query: 576 -------------------EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
E E+I A K + ++ + E+ E + + +
Sbjct: 386 NLKKEKNKAKKKLWLHLVAELKEDIDAYQKEK-KGLEKAINSLEKEIKQLEAEIKALEKE 444
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 38.4 bits (89), Expect = 0.016
Identities = 46/315 (14%), Positives = 108/315 (34%), Gaps = 23/315 (7%)
Query: 182 ATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTEL 241
+ L+ + + EK+ K + K K + L+ ++ +K + E+
Sbjct: 21 VKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEV 80
Query: 242 FRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQ 301
+ A + +++ + + ++++ L Q G + +K +RL+ L
Sbjct: 81 KEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLN 140
Query: 302 AALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKD------VQTALEEEQR 355
++ LEQ NK A ++ + + +QL+ T + +E +
Sbjct: 141 KSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEALNKQLERTKKVADALTYVLDEAQ 200
Query: 356 ARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS 415
+ + L R + ++ +S L + + L L+ +
Sbjct: 201 QKLS--QALSARLERLQESRTQMSQSSGQLGKRLETDKAGAGALG---LLGAALAGSFAA 255
Query: 416 ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ-TQEK 474
I AA R+ ++ E + ++ K A + ++ + D Q T E
Sbjct: 256 IGAAVRRTA-----------QMNGELMDKTKQVKGARDNLGKVTSQGEEMSDAIQETAEH 304
Query: 475 LRKALETQIKELQIR 489
++ + K I
Sbjct: 305 IKDSGRELSKAAAIG 319
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 38.0 bits (88), Expect = 0.020
Identities = 72/471 (15%), Positives = 158/471 (33%), Gaps = 28/471 (5%)
Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
+ +++ + + L + L HE ++ ++ E +++ A
Sbjct: 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHA 243
Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
L Q+ QL+ Q + + I+ + Q LEE Q + AR+ +
Sbjct: 244 YLTQKREA-QEEQLKKQQLLKQLRARIEELRAQEA----VLEETQERINRARKAAPLAAH 298
Query: 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
+ + Q ++ + A + Q +SI +R+L L +
Sbjct: 299 -----IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEE-QRRLLQTLHS 352
Query: 430 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
+ + A + E + + + L+ ++ + + ++ Q
Sbjct: 353 QEIHIRDAHEVATSIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCKELDILQREQAT 411
Query: 490 LD--EAENNALKGGK---KAIQKLEQRVREL-----ENELDGEQRRHADAQKNLRKTERR 539
+D + L+G K Q+L+QR EL E+ Q++ + + R
Sbjct: 412 IDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER 471
Query: 540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEA 599
++L E+ R + +V +++ + + ++ R+
Sbjct: 472 EQQLQ-TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSC----IHPNPARQDIDNPGPL 526
Query: 600 EERADLAEQAVSKIRTKGGSV-ARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEF 658
R EQ +++ T V + +S K S+ Q Q S L +E+
Sbjct: 527 TRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI 586
Query: 659 ENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANK 709
N + R D + EAE E + +KL+ + + ++ L
Sbjct: 587 PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQC 637
Score = 31.5 bits (71), Expect = 1.9
Identities = 51/361 (14%), Positives = 113/361 (31%), Gaps = 8/361 (2%)
Query: 242 FRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQ 301
+ + + E Q ++ + + A VK I E R + + + +
Sbjct: 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS-IEEQRRLLQTLHSQEIHIRDAHEVAT 365
Query: 302 AALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAR 361
+ E + ++ + + + +++ + L+ Q ++ A D +
Sbjct: 366 SIREISCQQHTLTQH--IHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQ 423
Query: 362 EQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKR 421
QL +++ Q E + + + + L ++ + L E Q +
Sbjct: 424 GQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL 483
Query: 422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALET 481
+ E + + L E + A + D Q E+ LET
Sbjct: 484 Q-ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLET 542
Query: 482 QIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIK 541
+++ +L E K+ +Q+++Q L + R D T R
Sbjct: 543 SEEDVYHQLTS-ERKQRASLKEQMQEIQQSFSILTQC---DNRSKEDIPNLQNITVRLQD 598
Query: 542 ELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601
+E + L+ KLQ + ++ + L L +L +E
Sbjct: 599 LTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE 658
Query: 602 R 602
R
Sbjct: 659 R 659
Score = 29.2 bits (65), Expect = 9.3
Identities = 59/360 (16%), Positives = 131/360 (36%), Gaps = 22/360 (6%)
Query: 223 LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRN 282
+ + +L+ + E+ QL + R++ +L ++++++ +
Sbjct: 519 DIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
Query: 283 IHEVEKARKRLEVEKDELQAALEEAEAALEQ--EENKVLRAQLELSQANAEAQKNIKRYQ 340
+ ++ L+ LQ E+ A + E L +L+ Q + + ++++
Sbjct: 579 DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS 638
Query: 341 QQLKDVQTALEEEQ-------------RARDDAREQLGIVERRANALQNELEE---SRQL 384
Q+L TAL Q R +E L + +Q+E E+ +++
Sbjct: 639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
Query: 385 LEQADRGRRQAETELADA----HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
L Q R+ ET + + +E N S+ + ++A + L L+ L +L
Sbjct: 699 LAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKA 758
Query: 441 AKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKG 500
+ + + A + EL Q +LR+ +K L+ + + +
Sbjct: 759 RTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDI 818
Query: 501 GKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL 560
+ L Q + + L+ + + L K E K+L+ +E K + L
Sbjct: 819 LNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
>gnl|CDD|153355 cd07671, F-BAR_PSTPIP1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Protein 1. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Proline-Serine-Threonine
Phosphatase-Interacting Protein 1 (PSTPIP1), also known
as CD2 Binding Protein 1 (CD2BP1), is mainly expressed
in hematopoietic cells. It is a binding partner of the
cell surface receptor CD2 and PTP-PEST, a tyrosine
phosphatase which functions in cell motility and Rac1
regulation. It also plays a role in the activation of
the Wiskott-Aldrich syndrome protein (WASP), which
couples actin rearrangement and T cell activation.
Mutations in the gene encoding PSTPIP1 cause the
autoinflammatory disorder known as PAPA (pyogenic
sterile arthritis, pyoderma gangrenosum, and acne)
syndrome. PSTPIP1 contains an N-terminal F-BAR domain,
PEST motifs, and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 242
Score = 36.9 bits (85), Expect = 0.024
Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 6/174 (3%)
Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492
D++ELL + +EE+ K +V AR A + ++L++ +E I I+L
Sbjct: 23 DVEELLKQRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIEN-IGNSHIQLAG 81
Query: 493 AENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRK 552
LK ++ ++ +++ ++ E ++ Q+ K ++++ ++ +A+E +
Sbjct: 82 MLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQ 141
Query: 553 NHERM-----QDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601
ER +K Q K K + EAE + N+ + KA+ E E
Sbjct: 142 TFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHI 195
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 37.5 bits (87), Expect = 0.026
Identities = 40/300 (13%), Positives = 89/300 (29%), Gaps = 23/300 (7%)
Query: 164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDL 223
+++L ++ IA +A + + E+ A A +A + + + G+ + ++
Sbjct: 208 LDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREV 267
Query: 224 AAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNI 283
L ++ E + E R E EQ + + L+
Sbjct: 268 KIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEA------RE 321
Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
V ++ E E + + + A + +E A + +
Sbjct: 322 MRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAA--------- 372
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
+ + EQ +V A Q ++E + + QA A+A
Sbjct: 373 -----VETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAE 427
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
+ A+A A + E + EL + + + + D +
Sbjct: 428 AIREKGKAEAE---AKRALAEAIQVLGDAAAAELFKALVQALPEVAEEAAQPMKNIDSEK 484
Score = 32.5 bits (74), Expect = 0.82
Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 8/219 (3%)
Query: 390 RGRRQAETELADAHEQLNELSAQATSISAAK----RKLEGELQTLHSDLDELLNEAKNSE 445
GRR+ L DA NE + A + +E E++ +
Sbjct: 211 LGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKII 270
Query: 446 EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI 505
+A V A + AEQ ++ +++ +E+Q G +
Sbjct: 271 LAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQ 330
Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
++ E +E ++ QR+ + K I + A E R + ++ +
Sbjct: 331 KETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVET----ARETEEAERAE 386
Query: 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
Q + E E++ A+ KA+ E + AE +A+
Sbjct: 387 QAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAE 425
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 37.4 bits (87), Expect = 0.027
Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 13/222 (5%)
Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD-RGRRQAETELADAHEQLN-E 408
++ + + R ++ R L+ L+E+ +E + EQ
Sbjct: 184 DQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSA 243
Query: 409 LSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDH 468
L+ Q S A + E L +L L A E + D + ++R +
Sbjct: 244 LNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIAD 303
Query: 469 AQTQEKLR----KALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR 524
T+ + ALE Q+ EL+ ++ L + LEQ+ LE EL +
Sbjct: 304 LSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKG 363
Query: 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
R L K + +++EL +AE R +E L+ + Q+
Sbjct: 364 R----LSKLPKLQVQLRELEREAEAARSLYE---TLLQRYQE 398
Score = 35.9 bits (83), Expect = 0.066
Identities = 48/250 (19%), Positives = 101/250 (40%), Gaps = 24/250 (9%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
++ + QLEA RR + +L + +++L + +++A ++E + +
Sbjct: 184 DQLEAQLEAFRRASDSLDERLEELRAR----------LQEAEAQVEDFRAQHGLTDAARG 233
Query: 309 AALEQEENKVLRAQLELSQAN-AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
L +++ L QL+ ++A A+A+ + Q L + A + + L
Sbjct: 234 QLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDL--R 291
Query: 368 ERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGEL 427
++ A Q + S +L + + E +LA+ +Q+ Q + + L L
Sbjct: 292 QQYAQVRQQIADLSTELGAKHPQLV-ALEAQLAELRQQIAAELRQILASLPNELAL---L 347
Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487
+ + L++ L + K K K V L E++ A+ L + L + +EL
Sbjct: 348 EQQEAALEKELAQLKGRLSKLPKLQVQLREL------ERE-AEAARSLYETLLQRYQELS 400
Query: 488 IRLDEAENNA 497
I+ NA
Sbjct: 401 IQEASPIGNA 410
Score = 33.6 bits (77), Expect = 0.35
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 10/208 (4%)
Query: 407 NELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE----- 461
++L AQ + A L+ L+ L + L E + ++ + +L E
Sbjct: 184 DQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSA 243
Query: 462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDG 521
L + A+ + +A + +L EA IQ L Q+ ++ ++
Sbjct: 244 LNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIAD 303
Query: 522 EQRRHADAQKNLRKTERRIKELSFQ-AEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
L E ++ EL Q A E R+ + + + L+Q+ ++++ + +
Sbjct: 304 LSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKG 363
Query: 581 IAALNLAKFRKAQQELEEAEERADLAEQ 608
L+K K Q +L E E A+ A
Sbjct: 364 ----RLSKLPKLQVQLRELEREAEAARS 387
Score = 30.9 bits (70), Expect = 2.9
Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 10/257 (3%)
Query: 199 ANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAV 258
+N + AK + + D L A+L+A ++ + L L+ +EA+ Q+E
Sbjct: 164 SNDPKLAAKLANALAQA--YLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDF 221
Query: 259 RRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKV 318
R ++ L D + L + +++ AR RL + +A L L
Sbjct: 222 RAQH-GLTDAARGQLLSEQQLSALNTQLQSARARL----AQAEARLASLLQLLPLGREAA 276
Query: 319 LRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNEL 378
++ S + ++ + +QQ+ D+ T L + QL + ++ + EL
Sbjct: 277 ALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQ---IAAEL 333
Query: 379 EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438
+ L Q E L QL ++ + R+LE E + S + LL
Sbjct: 334 RQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLL 393
Query: 439 NEAKNSEEKAKKAMVDA 455
+ + + +A
Sbjct: 394 QRYQELSIQEASPIGNA 410
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 37.6 bits (88), Expect = 0.028
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 22/185 (11%)
Query: 281 RNIHEVEKARKRLEVEKDEL-QAALE--EAEAALEQEENKVLRAQLELSQANAEAQKNIK 337
R I ++E R+ L+ EKDE + LE E E A +EE L Q + +A + + IK
Sbjct: 412 RRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIK 471
Query: 338 RYQQQLKDVQTALEEEQRARDDARE---QLGIVERRANALQNELEESRQLLEQADRGR-- 392
++++ V+ LE+ +R D A+ Q G + L+ L+ + L + + R
Sbjct: 472 ---EEIEQVRLELEQAEREGDLAKAAELQYG----KLPELEKRLQAAEAKLGEETKPRLL 524
Query: 393 RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM 452
R+ T E++ E+ ++ T I +K LEGE + L ++E+L+E +++A +A+
Sbjct: 525 REEVTA-----EEIAEVVSRWTGIPVSKM-LEGEREKL-LHMEEVLHERVVGQDEAVEAV 577
Query: 453 VDAAR 457
DA R
Sbjct: 578 SDAIR 582
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 37.6 bits (87), Expect = 0.030
Identities = 52/241 (21%), Positives = 107/241 (44%), Gaps = 32/241 (13%)
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS-------DLDEL 437
+E+ ++ + +T+LADA+ L E++ Q +++ K K + EL++ + D++ L
Sbjct: 1166 IEKLEKQLQVIDTKLADAY--LLEVTKQISALEKEKPKNQSELKSKIAKFFDTTADIEVL 1223
Query: 438 LNE--AKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN 495
NE K+ K + D +L+ L+ + L L I ++ L++ +
Sbjct: 1224 RNERIKKHGSSKDPLDLSDLDKLSGNLQ------GVNQSLVSIL---ITTIRSSLNQMKP 1274
Query: 496 NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHE 555
+ +K IQ+ + + +LE LD +D + LR+ ++K+L +K +
Sbjct: 1275 KTFEMQEKEIQQNFELLAKLEKTLD-----KSDTAEKLREDIPKLKDLLI---AKQKAYP 1326
Query: 556 RMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRT 615
M +LQ K + Q+ E + +LAK R A+ + + ++R V +
Sbjct: 1327 EMV----QLQYKSEALITQLRELCQAHHDDLAKTRTARLQELDRQDREGGITGIVGNLFW 1382
Query: 616 K 616
Sbjct: 1383 G 1383
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 37.2 bits (87), Expect = 0.030
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEEN-KVLRAQLELSQANAEAQKNIKRYQQQL 343
+E R+R+ + EL A EA + +E LRA+L +A A + R+QQ+
Sbjct: 420 ALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALE--ARWQQEK 477
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
+ V+ L DA AL+ +L E L A
Sbjct: 478 ELVEAILALRAELEADADAP----ADDDAALRAQLAELEAALASAQ 519
Score = 37.2 bits (87), Expect = 0.035
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 414 TSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKK-AMVDAARLADELRAEQDHAQTQ 472
+ AA L + L +LD L EA + ++ A + A A E A+ Q
Sbjct: 415 NATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQ 474
Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR---RHADA 529
++ K L I L+ L+ + +L + L GE+ DA
Sbjct: 475 QE--KELVEAILALRAELEADADAPADDDAALRAQLAELEAALA-SAQGEEPLVFPEVDA 531
Query: 530 Q 530
Q
Sbjct: 532 Q 532
Score = 31.1 bits (71), Expect = 2.3
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 309 AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVE 368
AALE ++ +LEL EA + + R +L +E
Sbjct: 419 AALEDLRRRIAALELELDALEREAALGA---------------DHDERLAELRAELAALE 463
Query: 369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQ 428
AL+ ++ ++L+E R + E + + L AQ + AA +GE
Sbjct: 464 AELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEP 523
Query: 429 TLHSDLDE 436
+ ++D
Sbjct: 524 LVFPEVDA 531
Score = 29.1 bits (66), Expect = 9.2
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 504 AIQKLEQRVRELENE---LDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL 560
A++ L +R+ LE E L+ E AD + L + + L + ++ ++L
Sbjct: 420 ALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKEL 479
Query: 561 VDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
V + I + ++E + A + A R ELE A A
Sbjct: 480 V----EAILALRAELEADADAPADDDAALRAQLAELEAALASAQ 519
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 37.6 bits (87), Expect = 0.030
Identities = 95/609 (15%), Positives = 199/609 (32%), Gaps = 15/609 (2%)
Query: 12 KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL-QLEVDRANAIANAAEKKA 70
K +KL+ L + +E IE L +++ LE ++ E E L +L+ KK
Sbjct: 322 KELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKK 381
Query: 71 KAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLL 130
+++ KLK + A + ++ + ++ E K + L
Sbjct: 382 LESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLE 441
Query: 131 FI--PFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL 188
EK L + KL+ + +E L + + LE R E
Sbjct: 442 TKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQ 501
Query: 189 QLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAY 248
+ R A K +II D A + E+ +
Sbjct: 502 KESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEV 561
Query: 249 EEAQEQLEAVRRENKNLA------DEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA 302
+E Q+ + A+ +K L I + + +E DE
Sbjct: 562 DERQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDK 621
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE 362
+ E L+ E L + ++ +++ + +++ +L E + +E
Sbjct: 622 RAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQE 681
Query: 363 QLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRK 422
E + + ++ + +L +++ I+ +
Sbjct: 682 LQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKL 741
Query: 423 LEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQ 482
LE +++ + ++ + + EE+ + + LA+E + +EK K +
Sbjct: 742 LEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQE 801
Query: 483 ------IKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKT 536
+EL+ + E L ++ K E+ + ++ ++ R
Sbjct: 802 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 861
Query: 537 ERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQEL 596
E KE Q ++ Q L D+L+ K + K + +E EE + + K +
Sbjct: 862 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIE 921
Query: 597 EEAEERADL 605
E E A +
Sbjct: 922 ERIAEEAII 930
Score = 32.6 bits (74), Expect = 0.80
Identities = 59/403 (14%), Positives = 126/403 (31%), Gaps = 21/403 (5%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
E EE + E+ L + D Q E++ + E+ +
Sbjct: 212 EYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQV 271
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
K E + + EL KE +EL +L+ + +E+L+ +E K L
Sbjct: 272 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKL---- 327
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
EK K+ + E +EL+ L+E E E EE + + + +
Sbjct: 328 -----------------EKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLE 370
Query: 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
++ + + + + + + +A + ++ + E+ + + E + ++ ++
Sbjct: 371 QLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEEL 430
Query: 390 RGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK 449
+ + E L +L E + + K + EL+ L E + +
Sbjct: 431 KIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELL 490
Query: 450 KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLE 509
+ + ++ L K A+ K AI
Sbjct: 491 LLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAV 550
Query: 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRK 552
+ E+++ A L R L + K
Sbjct: 551 IVEVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLK 593
Score = 32.2 bits (73), Expect = 1.3
Identities = 97/631 (15%), Positives = 213/631 (33%), Gaps = 24/631 (3%)
Query: 1 MGEQIDQLNKLKTK--RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 58
E+ +QL KL+ K + + LA+ + E L+ E+ + E ++ +L ++
Sbjct: 355 EEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLEL 414
Query: 59 ANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKG 118
+ + +++ K KI+ E + + + + DK+ +
Sbjct: 415 SEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDL 474
Query: 119 SLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTK 178
+ L + L+ R+ A L + L A
Sbjct: 475 LKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGD 534
Query: 179 QRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYS 238
+A + + V ++ A++ + + +L + L + S
Sbjct: 535 LGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLKS 594
Query: 239 TELFRLKGAYEEAQEQL-EAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK 297
+ + A AQ E+ A V+ +L K +
Sbjct: 595 IAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVS 654
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR 357
E A + A E K L A+ EL + + ++Q + + ++ +
Sbjct: 655 LEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELK 714
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
E+ ++ + Q+++ E +LLEQ ++ E E + ++ E S+
Sbjct: 715 KLKLEKEELLADKVQEAQDKINEELKLLEQ-KIKEKEEEEEKSRLKKEEEEEEKSELSLK 773
Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD------------AARLADELRAE 465
+ E E +E E+ KA + A L +E
Sbjct: 774 EKELAEEEEKTEKLKVEEEK--------EEKLKAQEEELRALEEELKEEAELLEEEQLLI 825
Query: 466 QDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525
+ + +E+ + L ++KE Q AE + ++ ++ + L+ E EQ+
Sbjct: 826 EQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 885
Query: 526 HADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALN 585
+ + K + KEL ++++D E+ ++ +++ ++ + E EE+
Sbjct: 886 KDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEE 945
Query: 586 LAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
+ K + EE EER A ++
Sbjct: 946 ADEKEKEEDNKEEEEERNKRLLLAKEELGNV 976
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 37.4 bits (87), Expect = 0.031
Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 26/261 (9%)
Query: 313 QEENKVLRA-QLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER-- 369
E K +L+ + ++K + Y + +Q ++ E++ R + VE
Sbjct: 788 DYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLR-----ETEEVEFSL 842
Query: 370 RANALQNELEES-----RQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRK-- 422
+A L + S R L + + Q+ + A QL EL SIS+ K
Sbjct: 843 KAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNL 902
Query: 423 -LEGELQTLHSDLDELL---NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
LE E+ L L L E K K +++ L + E KL +
Sbjct: 903 ELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEV 962
Query: 479 LETQIKELQIRLDEA--ENNALKG-GKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK 535
E+++KE ++ ++ L G KA +L+ +EL EL + ++ K L++
Sbjct: 963 -ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL-AELSKQYGALQESTKQLKE 1020
Query: 536 TERRIKELSFQAEEDRKNHER 556
+ EL Q+ + E
Sbjct: 1021 LPVEVAEL--QSASKIISSES 1039
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 37.4 bits (87), Expect = 0.033
Identities = 47/293 (16%), Positives = 107/293 (36%), Gaps = 42/293 (14%)
Query: 327 QANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLE 386
+ ++ + + + +E + + E+ + + L+NELEE+++ LE
Sbjct: 188 AGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247
Query: 387 QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD----------LDE 436
++ +E D E+ +L Q I AA++ +L+ L +D LD
Sbjct: 248 SL---EKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDS 304
Query: 437 LLNEAKNSEEKAKKAMVD------AARLADELRAEQDHAQTQEKLRKALETQIKELQI-- 488
+ + E+ + + L + L A+ +++ L K
Sbjct: 305 TKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDS 364
Query: 489 ------------RLDEAENNALKGGKKAIQKLEQRVRELENELD---------GEQRRHA 527
+L+ + + A +L + +RELE EL + + A
Sbjct: 365 EIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIA 424
Query: 528 DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
+ L + + + + EE + E +++ ++ L++ + +Q A E
Sbjct: 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFE 477
Score = 34.7 bits (80), Expect = 0.18
Identities = 50/321 (15%), Positives = 121/321 (37%), Gaps = 20/321 (6%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
RRK + IE+L ++ + + LA E+ L+ E++ A + EKK ++
Sbjct: 197 RRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSE 256
Query: 210 DKIIGE----WKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 265
+ E + ++ ++ A A++ + R + + L +++E ++
Sbjct: 257 GGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQ 316
Query: 266 ADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLR-AQLE 324
+++ +++ E + + E E+ A L E + + R + E
Sbjct: 317 QNQL--TQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSE 374
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQL 384
L+Q Q+ + Q + L E + + +++ + ++ + +
Sbjct: 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKI-----STIPSEEQIAQLLEE 429
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNS 444
L +A ++E E+ E L +L +I A ++ L+ + + + E + +
Sbjct: 430 LGEAQNELFRSEAEI---EELLRQLETLKEAIEALRKTLDEKTKQKINA-----FELERA 481
Query: 445 EEKAKKAMVDAARLADELRAE 465
A KA ++L
Sbjct: 482 ITIADKAKKTLKEFREKLLER 502
Score = 32.7 bits (75), Expect = 0.78
Identities = 67/351 (19%), Positives = 116/351 (33%), Gaps = 40/351 (11%)
Query: 8 LNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAE 67
L + +RK + IE+L ++ + + LA E+ L+ E++ A + E
Sbjct: 191 LTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250
Query: 68 KKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLY 127
KK ++ G+ + QLE A +A+ +
Sbjct: 251 KKFRSEG---GDLFEERE-QLERQLKEIEAARKANRAQLR-------------ELAADPL 293
Query: 128 CLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVED 187
LL IP L + + + EE + LE+ + L +
Sbjct: 294 PLLLIPNLLDSTKAQ---------------LQKEEQSQQNQLTQEELEERDKELLESLPK 338
Query: 188 LQLEVDRANAIANA-AEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKG 246
L L + IA AE A +L +L Q+ R +L
Sbjct: 339 LALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLK 398
Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE 306
E +E+L V ++ + E +QI + + E + R E E +EL LE
Sbjct: 399 ELRELEEELAEVDKKISTIPSE-----EQIAQLLEELGEAQNELFRSEAEIEELLRQLET 453
Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR 357
+ A+E K L + + NA + + K E+ R
Sbjct: 454 LKEAIEALR-KTLDEKTKQKI-NAFELERAITIADKAKKTLKEFREKLLER 502
Score = 29.3 bits (66), Expect = 8.6
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 552 KNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVS 611
+ +L + +I+ + +++E E + + ELEEA+ + E+
Sbjct: 195 LRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK--- 251
Query: 612 KIRTKGGSVA 621
K R++GG +
Sbjct: 252 KFRSEGGDLF 261
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 36.9 bits (85), Expect = 0.038
Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 10/299 (3%)
Query: 167 LNQKVIALEKTKQRLATEVE---DLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDD- 222
+ + + LE LA + D L + R + A K A + ++
Sbjct: 319 VKENMGTLETAWDALADAAKKMWDAVLGIGREDKQAALLAAKLAAEKLARVTAQGALNAR 378
Query: 223 LAAELDASQKECRNYSTELFRLK--GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGG 280
L D + NY+ GA +++ E + + + L D
Sbjct: 379 LKLAQDDLTQAELNYAAADQAANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTA 438
Query: 281 RNIHEVEKARKRLE-VEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRY 339
R + K +A E+ Q K A+ Q A K + +
Sbjct: 439 RQEELNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQEQM-TAALKALLAF 497
Query: 340 QQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETEL 399
QQQ+ D+ A E+ + + + + ++ L + + + ++L
Sbjct: 498 QQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYTSQL 557
Query: 400 AD-AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAAR 457
A+ +Q + A + + K + + + LN+A N E A + +D +
Sbjct: 558 AELLDQQADRFELSAQAAGSQKERGSDLYREALAQNAAALNKALN-ELAAYWSALDLLQ 615
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 36.2 bits (84), Expect = 0.040
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 6/158 (3%)
Query: 426 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKE 485
+Q L + D L K + KKA + L L A + + E LE++I+E
Sbjct: 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQE 70
Query: 486 LQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSF 545
++ R+ AE L K E+ +R L E+ + R + L + I++L
Sbjct: 71 IRERIKRAEE-KLSAVKD-----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124
Query: 546 QAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583
+ E+ ++ ER++ + + + +++ +I E + +
Sbjct: 125 EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELS 162
Score = 33.5 bits (77), Expect = 0.27
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 293 LEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
L++EKD L+ ++E AL++ + ++ L + ++ + Q+ +++ ++E
Sbjct: 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALE----ALEIELEDLENQVSQLESEIQE 70
Query: 353 EQRARDDAREQLGIV--ERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
+ A E+L V ER AL E ++ A E ELA+ E++ +L
Sbjct: 71 IRERIKRAEEKLSAVKDERELRALNIE-------IQIAKERINSLEDELAELMEEIEKLE 123
Query: 411 AQATSISAAKRKLEGELQTLHSDLDELLNEAK 442
+ + +LE L + L+E + E +
Sbjct: 124 KEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155
Score = 33.5 bits (77), Expect = 0.32
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 283 IHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE---------AQ 333
I E+ KA K+ + E + L ALE E LE EN+V + + E+ + A
Sbjct: 26 IKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV 85
Query: 334 KNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRR 393
K+ + + ++Q A E D+ E + +E+ +++ E +L +
Sbjct: 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA 145
Query: 394 QAETELADAHEQLNELSAQATSISA 418
+ E E+A+ E+ ELS++ +
Sbjct: 146 RLEEEVAEIREEGQELSSKREELKE 170
Score = 32.3 bits (74), Expect = 0.65
Identities = 30/157 (19%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA-IANAAEKKAKAIDK 211
L+ R+ E + ++ ++ AL K + L E+EDL+ +V + + I E+ +A +K
Sbjct: 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81
Query: 212 IIGEWKLK-VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
+ + + L E+ +++ + EL L E+ ++++E ++ + L +
Sbjct: 82 LSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141
Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
+ ++ E + E+ + + L +++EL+ L+
Sbjct: 142 EAEARLEE---EVAEIREEGQELSSKREELKEKLDPE 175
Score = 29.6 bits (67), Expect = 4.8
Identities = 35/180 (19%), Positives = 77/180 (42%), Gaps = 5/180 (2%)
Query: 174 LEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKE 233
+ + ++ L LE DR K K + ++ L EL+ + +
Sbjct: 1 MMNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQ 60
Query: 234 CRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL 293
+E+ ++ + A+E+L AV+ E E++ L +I I+ +E L
Sbjct: 61 VSQLESEIQEIRERIKRAEEKLSAVKDE-----RELRALNIEIQIAKERINSLEDELAEL 115
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
E ++L+ +E+ + LE+ E + A+ L + AE ++ + + ++++ L+ E
Sbjct: 116 MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE 175
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 37.0 bits (86), Expect = 0.041
Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 22/179 (12%)
Query: 429 TLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQI 488
++DL++L NEA + + + K A+ L +L E +KL LE Q EL+
Sbjct: 258 KAYADLEKLFNEALDEKFERDKIKQLASELEKKLEKEL------KKLENKLEKQEDELEE 311
Query: 489 RLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAE 548
AE KG + + Q + E + + + + + +E
Sbjct: 312 LEKAAEELRQKG--ELLYANLQLIEEGLKSVRLADF------YGNEEIKIELDKSKTPSE 363
Query: 549 EDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAE 607
++ ++ + KL+ RQ+ E +E +A + A+ LE+AE + + E
Sbjct: 364 NAQRYFKKYK----KLKGAKVNLDRQLSELKEA----IAYYESAKTALEKAEGKKAIEE 414
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 36.9 bits (86), Expect = 0.047
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLH 431
+ALQ E+ +Q LE R + Q++ ++L L A + +++LE +L+ L
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 432 SDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
E + +++ + A RL EL E+ ++LRKA
Sbjct: 205 EKAAE--TSQERKQKRKEITDQAAKRL--ELSEEETRILIDQQLRKA 247
Score = 33.8 bits (78), Expect = 0.36
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 424 EGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQI 483
E L L ++ L + + + ++ A EL A + A E+ ++ LE Q+
Sbjct: 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQL 200
Query: 484 KELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD-GEQRRHADAQKNLRK 535
++LQ + E + K+ + +R+ EL E R D Q LRK
Sbjct: 201 EQLQEKAAETSQERKQKRKEITDQAAKRL-----ELSEEETRILIDQQ--LRK 246
Score = 33.0 bits (76), Expect = 0.63
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
+D + L Q+ ++QL + R Q E +Q L + + E + +
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELE 197
Query: 404 EQLNELSAQATSISA---AKRKLEGELQTLHSDLDE 436
QL +L +A S KRK + +L E
Sbjct: 198 AQLEQLQEKAAETSQERKQKRKEITDQAAKRLELSE 233
Score = 32.6 bits (75), Expect = 0.90
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 527 ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNL 586
D + L ++ + L Q E + + Q L + QQ++ + E EE
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELE 197
Query: 587 AKFRKAQQE-----LEEAEERADLAEQAVSKI 613
A+ + Q++ E ++R ++ +QA ++
Sbjct: 198 AQLEQLQEKAAETSQERKQKRKEITDQAAKRL 229
Score = 31.5 bits (72), Expect = 1.9
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 245 KGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAAL 304
+ Q+++ ++++ + A E + + +E LE ++ EL+A L
Sbjct: 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQL 200
Query: 305 EEAEAALEQEENKVLRAQLELSQANAEAQKNI 336
E+ E+ + + + +A K +
Sbjct: 201 EQ---LQEKAAETSQERKQKRKEITDQAAKRL 229
Score = 31.5 bits (72), Expect = 2.2
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
E ++L+ LQQ++ T K+Q+E A + A QQEL E A E+ ++
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELE 197
Query: 615 TK 616
+
Sbjct: 198 AQ 199
Score = 31.1 bits (71), Expect = 2.6
Identities = 20/97 (20%), Positives = 38/97 (39%)
Query: 265 LADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE 324
L EV L Q+ R + + + + E L+ E E ++ E ++ + Q +
Sbjct: 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEK 206
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAR 361
++ + E ++ K Q EEE R D +
Sbjct: 207 AAETSQERKQKRKEITDQAAKRLELSEEETRILIDQQ 243
Score = 29.9 bits (68), Expect = 6.5
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 180 RLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYST 239
L ++E E ++ A+A A +++ A++ + E + K +L A+L+ Q++ S
Sbjct: 153 TLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQ 212
Query: 240 ELF-RLKGAYEEAQEQLEAVRRENKNLADE 268
E + K ++A ++LE E + L D+
Sbjct: 213 ERKQKRKEITDQAAKRLELSEEETRILIDQ 242
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407). This
family of proteins is found in bacteria. Proteins in
this family are typically between 366 and 597 amino
acids in length. There is a single completely conserved
residue R that may be functionally important.
Length = 297
Score = 36.1 bits (84), Expect = 0.050
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 20/150 (13%)
Query: 290 RKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE-LSQANAEAQKNIKRYQQQLKD--- 345
L + E QAA + AA + + L A++ L EAQ + Q+ +
Sbjct: 111 DTVLLEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQCEAE 170
Query: 346 ---------VQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLE---QADRGRR 393
+E++ D A+ +L ++ R +A +LE + LE QA +
Sbjct: 171 GTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQAAVAEK 230
Query: 394 QAETE----LADAHEQLNELSAQATSISAA 419
QA E L E L EL+ + S A
Sbjct: 231 QARIEANDGLLARLEALGELTTEDPSALLA 260
Score = 31.5 bits (72), Expect = 1.6
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 7/136 (5%)
Query: 426 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKE 485
EL+ ++D +L E + E+ A +A V A + A Q ++ +A
Sbjct: 102 ELKIFEKEIDTVLLEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAA 161
Query: 486 LQIRLDEAENNALKG----GKKAIQKLEQRVRELENELDGEQRRHADAQKNL--RKTERR 539
Q EAE G G +K E+ + L+ + R A L +K
Sbjct: 162 YQEAQCEAEGTGGTGVAGKGPVYKEKREKLD-AAQARLETLKARLDAAIAQLEAQKAALE 220
Query: 540 IKELSFQAEEDRKNHE 555
+ AE+ +
Sbjct: 221 RNRQAAVAEKQARIEA 236
>gnl|CDD|233595 TIGR01845, outer_NodT, efflux transporter, outer membrane factor
(OMF) lipoprotein, NodT family. Members of This model
comprise a subfamily of the Outer Membrane Factor (TCDB
1.B.17) porins. OMF proteins operate in conjunction with
a primary transporter of the RND, MFS, ABC, or PET
systems, and a MFP (membrane fusion protein) to tranport
substrates across membranes. The complex thus formed
allows transport (export) of various solutes (heavy
metal cations; drugs, oligosaccharides, proteins, etc.)
across the two envelopes of the Gram-negative bacterial
cell envelope in a single energy-coupled step. Current
data suggest that the OMF (and not the MFP) is largely
responsible for the formation of both the trans-outer
membrane and trans-periplasmic channels. The roles
played by the MFP have yet to be determined [Cellular
processes, Detoxification, Transport and binding
proteins, Porins].
Length = 454
Score = 36.2 bits (84), Expect = 0.055
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDD 359
++ A+E A A LE E A+L LS + A A + + QL AL ++ +
Sbjct: 136 VRRAVESALAQLEAAEADSQAARLTLSASIANAYVQLAALRAQLDVYHAALASRRKTLEL 195
Query: 360 AREQLGI-VERRANALQNE--LEESRQLLEQADRGRRQAETELA 400
+++ V ++ Q E + + L D QA LA
Sbjct: 196 TQKRYAAGVAAASDVRQAEAAVASAEAELPSLDVQIAQARNALA 239
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 36.0 bits (83), Expect = 0.073
Identities = 59/269 (21%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 160 AEETIESLNQ-KVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL 218
AE+ I LNQ ++ ALE +++ TE E LQ +++ I + A K+ + K+
Sbjct: 140 AEKNILLLNQARLQALEDL-EKILTEKEALQGKIN----ILEMRLSETDARIKLAAQEKI 194
Query: 219 KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQ-EQLEAVRRENKNLADEV---KDLLD 274
V+ L +L+ + E +G + ++L+ ++ EN L D++ K L
Sbjct: 195 HVEILEEQLEKLRNELLIRGA----TEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI 250
Query: 275 QIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA------ALEQEE--NKVLRAQLELS 326
++ E + ++EK R L+ EL++ A+ L+ + KV Q L
Sbjct: 251 EVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310
Query: 327 QANAEAQKNIKRYQQ--QLKDVQTALEE---EQRARDDAREQLGIVERRANALQNELEES 381
+A + +K Q L+D LE E + ++ +++++ L+ L+ S
Sbjct: 311 RATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS 370
Query: 382 RQLLEQADRGRRQAETELADAHEQLNELS 410
+ + +++ E D +L E S
Sbjct: 371 DHEIHSYIQLYQESIKEFQDTLSKLKEES 399
Score = 32.2 bits (73), Expect = 1.3
Identities = 63/303 (20%), Positives = 118/303 (38%), Gaps = 39/303 (12%)
Query: 313 QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG------I 366
Q EN LR +EL Q + + + R Q + A++ EQ+ EQL +
Sbjct: 74 QLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDL 133
Query: 367 VERRANALQN--ELEESR-QLLEQADRGRRQAET---ELADAHEQLNELSAQATSISAAK 420
V NA +N L ++R Q LE ++ + E ++ +L+E A+ + K
Sbjct: 134 VGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEK 193
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE----------LRAEQDHAQ 470
+E + L +ELL + L +E L+AE
Sbjct: 194 IHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA 253
Query: 471 -------TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD--G 521
EK R L+ ++EL+ + A+ + K ++V L++ LD
Sbjct: 254 ETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRAT 313
Query: 522 EQRRHA----DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEE 577
Q A D ++LR +++ + ++ + V+ LQQK+K + +++
Sbjct: 314 NQVEKAALVLDQNQDLRDKVDKLEA----SLKEANVSKFSSYKVELLQQKLKLLEERLQA 369
Query: 578 AEE 580
++
Sbjct: 370 SDH 372
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 36.1 bits (83), Expect = 0.079
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 13/150 (8%)
Query: 481 TQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRI 540
T I L L + E AL Q+ Q +R+L +++ D + L +I
Sbjct: 95 TAIHALLASLPQNEQAAL-------QQGLQELRQLLQQINDLVSARIDVDRRLALFAEQI 147
Query: 541 KELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAE 600
L + + L +LQ + +T I +A+ + ++R QQELEE
Sbjct: 148 DWLH------QDFGMELSPLRQELQWQQETLLDGITQAQVDNGQRVLQYRLYQQELEEVY 201
Query: 601 ERADLAEQAVSKIRTKGGSVARGSSPLKLV 630
L Q +R + + +S ++L
Sbjct: 202 NVLRLEGQIQQSLRDRVVETQKLNSTIQLD 231
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 35.8 bits (83), Expect = 0.082
Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 244 LKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNI-HEVEKARKRLEVEKDELQA 302
L +E +++L + EN+ L E + L + + I V+ + L E ++L++
Sbjct: 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKS 123
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKN 335
++ + ++Q L+ +L +
Sbjct: 124 ERQQLQGLIDQ-----LQRRLAGVLTGPSGGGS 151
Score = 33.8 bits (78), Expect = 0.34
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 23/95 (24%)
Query: 477 KALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRE-LENELDGEQRRHADAQKNLRK 535
K L ++ +L +EN ALK + +QK EQ + + ++ + E + + L K
Sbjct: 69 KELRKRLAKL-----ISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQL-K 122
Query: 536 TERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT 570
+ER+ ++Q L+D+LQ+++
Sbjct: 123 SERQ----------------QLQGLIDQLQRRLAG 141
Score = 29.2 bits (66), Expect = 8.3
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 297 KDELQAALEEAEAALEQEENKVLRAQLELSQAN-----AEAQKNIKRYQQQLKDVQTALE 351
+ + A A L EE K L + + AE ++ KR + + + +
Sbjct: 28 SGSPEPTSDTALAELSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKA 87
Query: 352 EEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
E +R + + + I ++ A+Q+E +E + +EQ R+Q + + +L +
Sbjct: 88 ENERLQ---KREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144
Query: 412 QATS 415
+
Sbjct: 145 GPSG 148
>gnl|CDD|225649 COG3107, LppC, Putative lipoprotein [General function prediction
only].
Length = 604
Score = 35.6 bits (82), Expect = 0.092
Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 20/168 (11%)
Query: 345 DVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHE 404
Q L++ Q++ + + ++ RA + + +++ LL Q EL D
Sbjct: 46 SSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALL-------NQLPQELTD--A 96
Query: 405 QLNELSAQATSISAAKRKLEGELQTL-HSDLDEL-------LNEAKNSEEKAKKAMVDAA 456
Q E S A ++ A+++ LQ L +L +A+ +A+ +DAA
Sbjct: 97 QRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALEARGDSIDAA 156
Query: 457 R---LADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGG 501
R D L + + +K + L Q I E NA G
Sbjct: 157 RARIAQDPLLSGKAKQANIDKTWQLLSEQANTGVINNSADEGNAALQG 204
>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and
secretion].
Length = 457
Score = 35.5 bits (82), Expect = 0.095
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 6/158 (3%)
Query: 302 AALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAR 361
A + AEAA + ++ A+L L+ A A ++ Q+QL + L + + A
Sbjct: 129 ANVRAAEAAAKAARAQLEAARLSLAAEVATAYFDLLAAQEQLALAEETLAAAEEQLELAE 188
Query: 362 EQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKR 421
++ A + ++ ++ L A A+ +LA A L L
Sbjct: 189 KRY----DAGLATRLDVLQAEAQLASARAQLAAAQAQLAQARNALARLLGLEPGELLDAP 244
Query: 422 KLEGELQTLHSDLDELLNEAK--NSEEKAKKAMVDAAR 457
+ E D L +EA + A +A + AA
Sbjct: 245 EPEALPALPPVLPDGLPSEALARRPDILAAEAQLAAAN 282
Score = 33.2 bits (76), Expect = 0.46
Identities = 56/278 (20%), Positives = 99/278 (35%), Gaps = 32/278 (11%)
Query: 151 RKLQARLAEAEETIESLNQKV-IALEKTKQRLATEVEDLQLEVDRANAIANAAEKKA--- 206
Q +LA AEET+ + +++ +A ++ LAT ++ LQ E A+A A A +A
Sbjct: 164 LAAQEQLALAEETLAAAEEQLELAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLA 223
Query: 207 ---KAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK 263
A+ +++G ++ D + + N
Sbjct: 224 QARNALARLLGLEPGELLDAPEPEALPALPPVLPDGLPSEALARRPDILAAEAQLAAANA 283
Query: 264 NLADEVKDLLDQIGEGG-----------RNIHEVEKARKRLEVE---------KDELQAA 303
N+ L + + + ++ A
Sbjct: 284 NIGAARAAFLPTLSLTASYGRSSTNLSGLFGSSSRSWSVGPGLSLPIFDGGRLRARVRQA 343
Query: 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQ 363
+ +AAL Q E VL A+ E++ A A + +++ Q + V+ A E + AR R Q
Sbjct: 344 EAQYDAALAQYEQTVLTARQEVADALAALEAALEQLQALRQAVEAAQEALELAR--ERYQ 401
Query: 364 LGIVERRA--NALQNELEESRQLLEQADRGRRQAETEL 399
G+ +A Q L ++RQ L QA A L
Sbjct: 402 AGVRTLLDVLDA-QRTLLQARQALLQARYDYLVALVNL 438
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 35.8 bits (82), Expect = 0.096
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 235 RNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLL-DQIGEGGRNIHEVEKARKRL 293
R ++ E + K E A+ + + R D VK ++ Q G R+ +
Sbjct: 305 RQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRTI 364
Query: 294 EVEKDELQAALEE-AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
+ L A ++ AA E E EL + N A+ + Y + +++A +
Sbjct: 365 STARAGLDALVKGLGGAAPESAE--------ELLELNNAARLTVDEYPAAREALESAGQR 416
Query: 353 EQRARDDAREQLGIVERRANALQ 375
R A ++ ++ ++L
Sbjct: 417 NVEDRTRAVDEFKAADQELSSLS 439
Score = 30.0 bits (67), Expect = 5.3
Identities = 44/238 (18%), Positives = 90/238 (37%), Gaps = 19/238 (7%)
Query: 219 KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK-NLAD-EVKDLLDQI 276
KV+ L + A Y ++ R +G Y + QEQ A+ N A ++ QI
Sbjct: 617 KVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQI 676
Query: 277 GEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI 336
E + + + + + +AAL+ A+ + E + + A +K++
Sbjct: 677 AELQARLERLTHTQSDIAI----AKAALDAAQTRQKVLERQYQQE----VTECAGLKKDL 728
Query: 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRG-RRQA 395
KR + V + A+ L A+ Q E+ +++ RRQ
Sbjct: 729 KRAAMLSRKVHSI------AKQGMTGALQA-LGAAHFPQVAPEQHDDIVDIERIEHRRQL 781
Query: 396 ETELADAHEQLNELSAQATSI-SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM 452
+ + + +L L + S AK++ L + ++LD++ + + A+
Sbjct: 782 QKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDAL 839
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 35.3 bits (82), Expect = 0.099
Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
+LQ ++ A+L E R++L+ AE + + ++ L+ E
Sbjct: 73 RQGNQDLQDSVANLRASLSAAEA--ERSRLQ--ALLAELAGAGAAAEGRAGELAQELDSE 128
Query: 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ 412
++ A Q+ ++ ++ AL+ +L L+ +++ R+++ ++AD +LN AQ
Sbjct: 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187
Score = 29.2 bits (66), Expect = 8.4
Identities = 26/142 (18%), Positives = 54/142 (38%)
Query: 321 AQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE 380
AQ LS+ + + R Q+ ++ L E++ D ++ + + +A + E
Sbjct: 40 AQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSR 99
Query: 381 SRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
+ LL + AE + ++L+ + A L ++ L L L
Sbjct: 100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159
Query: 441 AKNSEEKAKKAMVDAARLADEL 462
SE++ +++ A L L
Sbjct: 160 LDASEKRDRESQAKIADLGRRL 181
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 35.2 bits (81), Expect = 0.12
Identities = 52/283 (18%), Positives = 123/283 (43%), Gaps = 25/283 (8%)
Query: 256 EAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQE- 314
EAV+ + L EV+ L +QI + + + + +EK + + LE EA +
Sbjct: 425 EAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGL 484
Query: 315 ENKVLRAQLELSQANAEAQ---KNIKRYQQQLKD----------VQTALEEEQRARDDAR 361
+ ++ + E S+AN++ Q + ++LKD +L+ + ++
Sbjct: 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544
Query: 362 EQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT------- 414
+ E+++ A + + E +++ E DR + + E A + S+
Sbjct: 545 RAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKE 604
Query: 415 SISAAKRKLEGELQTL--HSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQ 472
+ K+++E EL + L+ + KN + + + + L E+ + + +
Sbjct: 605 KVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLN-EEINKKIE 663
Query: 473 EKLRKA-LETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRE 514
+R + L+++I+ L++ + +A K+ I+ LEQ++++
Sbjct: 664 RVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQ 706
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 35.1 bits (81), Expect = 0.13
Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 22/235 (9%)
Query: 401 DAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM-----VDA 455
D QL + A A A R+L L + + + ++ ++
Sbjct: 144 DEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203
Query: 456 ARLAD----ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQR 511
A L L AEQ EKLR+ + + L+ +D E + L+G +A L
Sbjct: 204 ADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALAS- 262
Query: 512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
++ L + +A + + R ++ + E D + +++ + ++++ + Y
Sbjct: 263 --VIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKY 320
Query: 572 KRQIEEA--------EEIAALNLAKFRKA--QQELEEAEERADLAEQAVSKIRTK 616
+EE EE+ L+ + ++E+++ EE D A A+S IR K
Sbjct: 321 GASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375
Score = 34.7 bits (80), Expect = 0.19
Identities = 51/258 (19%), Positives = 108/258 (41%), Gaps = 15/258 (5%)
Query: 267 DEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELS 326
DE + LLD + + + + +L+ ++ E L Q + + EL
Sbjct: 144 DEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKD-RQQKEQELAQRLDFLQFQLEELE 202
Query: 327 QANAEAQKN--IKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQL 384
+A+ + ++ ++ QQ+L +++ E Q A R V+ + +L L E++
Sbjct: 203 EADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGD---VDVQEGSLLEGLGEAQLA 259
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL---LNEA 441
L G L + EQ+ + + + EL+ L+E+ L +
Sbjct: 260 LASVIDG------SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQI 313
Query: 442 KNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGG 501
K + K ++ + A++++ E D ++ +ALE ++ +L+ LD+A
Sbjct: 314 KRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373
Query: 502 KKAIQKLEQRVRELENEL 519
+KA ++L +RV + L
Sbjct: 374 RKAAERLAKRVEQELKAL 391
>gnl|CDD|224380 COG1463, Ttg2C, ABC-type transport system involved in resistance to
organic solvents, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 359
Score = 35.1 bits (81), Expect = 0.13
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 15/142 (10%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKI 212
L A T LN + L + L D+ + N + ++ + +D+
Sbjct: 164 LNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDR- 222
Query: 213 IGEWKLKVDDLAAELDASQKECRNYSTE-----------LFRLKGAYEEAQEQLEAVRRE 261
+ L A L A + + L + +A L +
Sbjct: 223 ---LLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATL 279
Query: 262 NKNLADEVKDLLDQIGEGGRNI 283
+ ++ LL + N+
Sbjct: 280 LVDYLPGLEQLLHGLPTYAANL 301
Score = 32.1 bits (73), Expect = 1.2
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 7 QLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAA 66
L+ + L A T LN + L + L D+ + N + ++
Sbjct: 154 GLDPDRLNAILNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSL 213
Query: 67 EKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEK 102
+ +D+++ L R +A+ +A
Sbjct: 214 AAASDQLDRLLD--NLATLTAALAARRDALDDALAA 247
Score = 31.7 bits (72), Expect = 1.6
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 320 RAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE 379
R L++A A + L ++ + A + +G + N L + L
Sbjct: 159 RLNAILNEAAAALAGTGPQLNALLDNLAQFTD----ALNARDGDIGALIANLNQLLDSLA 214
Query: 380 ESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQ-TLHSDLDEL 437
+ L++ LA + L++ A ++++A L E + L+ L L
Sbjct: 215 AASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANL 273
Score = 30.1 bits (68), Expect = 4.3
Identities = 35/173 (20%), Positives = 53/173 (30%), Gaps = 21/173 (12%)
Query: 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE-LS 326
+++DLL + + D L A L EA AAL L A L+ L+
Sbjct: 140 DLEDLLGDLLLLLGGLDP------------DRLNAILNEAAAAL-AGTGPQLNALLDNLA 186
Query: 327 QANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLE 386
Q + ++ L+ A D L + AL + L
Sbjct: 187 QFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLTAALAARRDALDDALA 246
Query: 387 QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLN 439
LA+ LN+ A R L L L++LL+
Sbjct: 247 ALSALAATVNDLLAENRPNLNQALANL-------RPLATLLVDYLPGLEQLLH 292
>gnl|CDD|233547 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer membrane
[Transport and binding proteins, Unknown substrate].
Length = 322
Score = 34.6 bits (80), Expect = 0.16
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 290 RKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTA 349
++ A L AEA LE + RA+ L + NA +Q ++ + ++ Q
Sbjct: 59 DDDYQLALQAALAQLAAAEAQLELAQRSFERAE-RLVKRNAVSQADLDDAKAAVEAAQAD 117
Query: 350 LEEEQRARDDAREQLGIVERRA 371
LE + + A+ L E RA
Sbjct: 118 LEAAKASLASAQLNLRYTEIRA 139
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 34.0 bits (78), Expect = 0.16
Identities = 21/115 (18%), Positives = 54/115 (46%)
Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEA 332
++ E + E+++ L+ E ++L+ + E E+ LE + + + L
Sbjct: 71 PQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERL 130
Query: 333 QKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ 387
+ + ++ K+++ ++ + ++ RE+L ++ LQ ++E + LLEQ
Sbjct: 131 ESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQ 185
Score = 29.7 bits (67), Expect = 3.9
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 281 RNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ 340
+ + L+ E EL+ L E + LE E ++ + EL + Q + +
Sbjct: 65 PVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLK 124
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
+ +++ E + + RE + L+ ELE ++ L++ +A EL
Sbjct: 125 SLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQ----EAIQELQ 180
Query: 401 DAHEQL 406
EQL
Sbjct: 181 SLLEQL 186
Score = 29.0 bits (65), Expect = 5.9
Identities = 22/111 (19%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
+ +L+Q++ EL+ EL+ + R A+ + EL E+ + E ++ L ++L
Sbjct: 81 LSELKQQLSELQEELEDLEERIAELE----------SELEDLKEDLQLLRELLKSLEERL 130
Query: 565 QQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRT 615
+ ++ K +E E+ + + ++ELE +E ++A+ ++++
Sbjct: 131 ESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQS 181
>gnl|CDD|214369 CHL00118, atpG, ATP synthase CF0 B' subunit; Validated.
Length = 156
Score = 33.0 bits (76), Expect = 0.20
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKL 423
L +++ R ++ L ++ ++L +A+ +Q E EL+ A ++ Q+ AK +
Sbjct: 48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE--AKEIV 105
Query: 424 EGELQTLHSDLDELLNEA-KNSEEKAKKAM 452
E EL+ +D LLNEA K E + +KA+
Sbjct: 106 ENELKQAQKYIDSLLNEATKQLEAQKEKAL 135
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component. Nup88 can be divided
into two structural domains; the N-terminal two-thirds
of the protein has no obvious structural motifs but is
the region for binding to Nup98, one of the components
of the nuclear pore. the C-terminal end is a predicted
coiled-coil domain. Nup88 is overexpressed in tumour
cells.
Length = 717
Score = 34.5 bits (79), Expect = 0.21
Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 36/185 (19%)
Query: 317 KVLRAQLELSQ--ANAEAQKNIKRYQ----QQLKDVQTALEEEQRARDDAREQLGIVERR 370
+V R Q L A E Q+ +K Q +QL+D+Q D RE+ + R
Sbjct: 546 QVFREQYLLKHDLAREEFQRRVKLLQLQKEKQLEDIQ-----------DCREERKSLSER 594
Query: 371 ANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTL 430
A L + EE++ Q R L ++Q +S ++R + ELQ +
Sbjct: 595 AEKLAEKFEEAKY--NQELLVNR--------CKRLLQSANSQLPVLSDSERDMSKELQRI 644
Query: 431 HSDLDEL---LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487
+ L L + + K + + M + EK K + +KEL
Sbjct: 645 NKQLQHLANGIKQVKKKKNYQRYHMASQESPK------KSSYTLPEKQHKTITEILKELG 698
Query: 488 IRLDE 492
+D
Sbjct: 699 EHIDR 703
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 34.5 bits (79), Expect = 0.21
Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 23/226 (10%)
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS---ISAAKRKL 423
+E R AL+ ++Q++ ++ EL+D + Q + AA+
Sbjct: 206 LEDRVRALEKARAAAQQVIAPLTPEEQKVAPELSDEEGNAIPPADQEVAEEIQDAAQIAQ 265
Query: 424 EGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQI 483
+ E + L+E ++ + A +A +DAA LR E E L
Sbjct: 266 QQEATAALAALEEPISAGGATAAAAGQAAIDAAEAKAYLRPEDRIPGWTETASGTLLDSY 325
Query: 484 KELQIRLDEAE----------NNALKG--------GKKAIQKLEQRVRELENELDGEQRR 525
E + LDEA +N G K+A ++EQ++ + + +LD +
Sbjct: 326 PEPEEELDEAAIAKAPDVPGWSNTASGTLTDSYVTPKEAQAEIEQKLAQEKAQLDAAVEK 385
Query: 526 HADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
+ ++ R +L + E + ++ Q + + Q Y
Sbjct: 386 GELTPEQAKQIAR--AKLEPEERERLEKIDKAQAALKQAQSAFDLY 429
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 34.5 bits (79), Expect = 0.21
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 35/233 (15%)
Query: 215 EWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLD 274
+W ++L ELDAS+ EL K EE +E ++ + + ++ DL +
Sbjct: 1062 KWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEE 1121
Query: 275 QIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRA-QLELSQANAEAQ 333
++I + + R+ E D +AA A A + E+K + A E+S E +
Sbjct: 1122 ------KHIQLLARHRRIQEGIDDVKKAA---ARAGVRGAESKFINALAAEISALKVERE 1172
Query: 334 KNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRR 393
K + + + K +Q L + A A E L L+E+ + L A +
Sbjct: 1173 KERRYLRDENKSLQAQLRDTAEAVQAAGELL-----------VRLKEAEEALTVAQKRAM 1221
Query: 394 QAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEE 446
AE E A+A++Q+++L KRK E E+ T L++L+ E++ +E
Sbjct: 1222 DAEQEAAEAYKQIDKL----------KRKHENEIST----LNQLVAESRLPKE 1260
Score = 33.0 bits (75), Expect = 0.79
Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 43/269 (15%)
Query: 375 QNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS-- 432
Q+ELE R + +R E L + + ++L S + RK L+ +S
Sbjct: 973 QDELEHYRNFYDMGER-----EVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCE 1027
Query: 433 -DLDELLNEAKNSEEKAKKAMVDAAR------------LADELRAEQDHAQT-QEKLRKA 478
LN S +++ + ++ R LA+ELR E D ++ EK +
Sbjct: 1028 PSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHE 1087
Query: 479 LETQIKELQIRLDEAENNALKGGKKAIQK----------LEQRVRELENELDGEQRRHAD 528
L+T+ K L EA A++G + +++ L R R ++ +D ++ A
Sbjct: 1088 LDTE-KRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKK--AA 1144
Query: 529 AQKNLRKTERRI-----KELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583
A+ +R E + E+S E K ++D LQ ++ R EA + A
Sbjct: 1145 ARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQL----RDTAEAVQAAG 1200
Query: 584 LNLAKFRKAQQELEEAEERADLAEQAVSK 612
L + ++A++ L A++RA AEQ ++
Sbjct: 1201 ELLVRLKEAEEALTVAQKRAMDAEQEAAE 1229
Score = 29.5 bits (66), Expect = 8.1
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 371 ANALQNELEESRQLLEQA----DRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
A L+ EL+ SR L E+ D +R AE EL +A + E A+ A + +
Sbjct: 1067 AEELRTELDASRALAEKQKHELDTEKRCAE-ELKEAMQMAMEGHARMLEQYADLEEKHIQ 1125
Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAA--RLADELRAEQDHAQTQ-EKLRKALETQI 483
L H + E +++ K + A +A V A + + L AE + + EK R+ L +
Sbjct: 1126 LLARHRRIQEGIDDVKKA---AARAGVRGAESKFINALAAEISALKVEREKERRYLRDEN 1182
Query: 484 KELQIRL-DEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKE 542
K LQ +L D AE +A +L R++E E L Q+R DA++ + ++I +
Sbjct: 1183 KSLQAQLRDTAE------AVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK 1236
Query: 543 LSFQAEED 550
L + E +
Sbjct: 1237 LKRKHENE 1244
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 34.4 bits (80), Expect = 0.24
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 21/137 (15%)
Query: 297 KDELQAALEEAEAAL--------EQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
+ EL L++ + L EQ+ ++ + L + E + + QQ+L +Q
Sbjct: 262 RAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERL--LAQQQQRLDRLQQ 319
Query: 349 ALE----------EEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGR-RQAET 397
L+ +++ R R Q +RR Q LE+ Q L +A R + ++
Sbjct: 320 RLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQ 379
Query: 398 ELADAHEQLNELSAQAT 414
L +QL LS AT
Sbjct: 380 RLEALAQQLEALSPLAT 396
Score = 32.9 bits (76), Expect = 0.64
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 11/134 (8%)
Query: 398 ELA--DAHEQLNEL-SAQATSISAAKRKLEGELQTLHS--------DLDELLNEAKNSEE 446
ELA D E L L Q A +R+LE + Q L + LL + + +
Sbjct: 256 ELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLD 315
Query: 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQ 506
+ ++ + A L ++ +Q ++ + +I+ Q RL++ E + ++ ++
Sbjct: 316 RLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLK 375
Query: 507 KLEQRVRELENELD 520
+ QR+ L +L+
Sbjct: 376 RKRQRLEALAQQLE 389
Score = 31.3 bits (72), Expect = 1.7
Identities = 27/143 (18%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 373 ALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS 432
A+ + E ++L + R R L ++L++L A+ + +R L + Q L
Sbjct: 258 AVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQL-ARRLKFQSPERLLAQQQQRLDR 316
Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492
L ++A + + A+ E +++ Q ++ + + ++++L+ RL
Sbjct: 317 LQQRL--------QRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRR 368
Query: 493 AENNALKGGKKAIQKLEQRVREL 515
A LK ++ ++ L Q++ L
Sbjct: 369 AMRRQLKRKRQRLEALAQQLEAL 391
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 33.8 bits (78), Expect = 0.27
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL 323
+ + ++ + + E ++ ++ + + L+ E EL++ L+E E + EN LR L
Sbjct: 52 RVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELEQL--EAENARLRELL 109
Query: 324 ELSQANAE 331
L ++
Sbjct: 110 NLKESLDY 117
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 33.7 bits (78), Expect = 0.28
Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
++ L +R ELE L + + ++LS K + ++ +V+K
Sbjct: 9 LESLLERYEELEALL---------SDPEVISDPDEYRKLS-------KEYAELEPIVEKY 52
Query: 565 QQKIKTYKRQIEEAEEIAALNLAKFRK--AQQELEEAEERADLAEQAV 610
+ + K + +E+A+E+ A + A++E++E E + + E+ +
Sbjct: 53 R-EYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEEL 99
Score = 29.9 bits (68), Expect = 4.6
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 291 KRLEVEKDELQAALEEAEAALEQEENKVL-RAQLELSQANAEAQKNIKRYQQQLKDVQTA 349
+ L +EL+A L + E + +E + L + EL + E + K+ Q+ L+D +
Sbjct: 10 ESLLERYEELEALLSDPEVISDPDEYRKLSKEYAEL-EPIVEKYREYKKAQEDLEDAKEM 68
Query: 350 LEEEQRA--RDDAREQLGIVERRANALQNELE 379
L EE+ R+ A E++ +E + L+ EL+
Sbjct: 69 LAEEKDPEMREMAEEEIKELEAKIEELEEELK 100
>gnl|CDD|218559 pfam05335, DUF745, Protein of unknown function (DUF745). This
family consists of several uncharacterized Drosophila
melanogaster proteins of unknown function.
Length = 188
Score = 33.1 bits (76), Expect = 0.30
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAE-AQKNIKRYQQQLKDVQTALEEEQRA 356
++L+ + EAEA +E+E L+ S+ANA AQ ++ Q Q+ ++ L+
Sbjct: 70 EQLEQEVREAEAVVEEESQ-----SLQQSEANATAAQAAAQQAQTQVNTLKALLKN---- 120
Query: 357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
A+ L +E+ A+ Q EL E QLLE A R E +L +A
Sbjct: 121 ---AQANLENIEQVASGAQQELAEKTQLLEAAKRRVEVLERQLKEAR 164
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 33.9 bits (77), Expect = 0.31
Identities = 85/462 (18%), Positives = 193/462 (41%), Gaps = 42/462 (9%)
Query: 156 RLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGE 215
+ + EE + ++ + L + K L E+ED+++ + R+ + A E+ + K I +
Sbjct: 269 KANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQ 328
Query: 216 WKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQ 275
++ A+++ K +S + + +E L ++ + D++K + +
Sbjct: 329 L---TEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITME 385
Query: 276 IGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKN 335
+ + + E+ K + EVE +EL+ L E E L+++
Sbjct: 386 LQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEK--------------------- 424
Query: 336 IKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQA 395
K + EE + + L E+ + L+ +L + E +
Sbjct: 425 --------KQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476
Query: 396 ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL---DELLNEAKNSEEKAKKAM 452
+TEL + EL+A + ++L E + +L E + K EE+ K +
Sbjct: 477 KTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQI 536
Query: 453 VDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRV 512
+ LR E E +R+ + E++ +LD++E NA + + + K E+++
Sbjct: 537 ENLEEKEMNLRDEL------ESVREEFIQKGDEVKCKLDKSEENA-RSIEYEVLKKEKQM 589
Query: 513 RELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK 572
+ LEN+ + +++ + KN+ + + K L + + K + V+KL+ ++ + K
Sbjct: 590 KILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
Query: 573 RQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
++ EE + + + ++++L E E+A K++
Sbjct: 650 QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQ 691
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 33.7 bits (77), Expect = 0.31
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 396 ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD- 454
E+ A E ++ +S++ + +SA + + L + L+ L + +A + VD
Sbjct: 41 ESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGL-----ITTVQALQTSVDS 95
Query: 455 -AARLADELRAEQDHAQTQEKLRK---ALETQIKELQIRLDEAENNALKGGKKAIQKLEQ 510
++ LAD H L+ A T I L+ N L I LEQ
Sbjct: 96 LSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLK---SSVSANGL-----NITDLEQ 147
Query: 511 RVRELE 516
RV+ LE
Sbjct: 148 RVKSLE 153
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 33.9 bits (77), Expect = 0.32
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
+E R E A+ E+ L+ +++ RL+E E L G ++ +QKL Q + +
Sbjct: 355 TEENREEGTQAEKYEQEIARLKERLRVSVRRLEEYERR-LLGQEQQMQKLLQEYQARLED 413
Query: 519 LDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQI 575
+ RR + + + K+ I L EE +K+H MQ +VD Q+ I +R+I
Sbjct: 414 SEERLRRQQEEKDSQMKSI--ISRLMAVEEELKKDHADMQAVVDSKQKIIDAQERRI 468
Score = 31.2 bits (70), Expect = 2.3
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 246 GAYEEAQEQLEAVRRENKNL---ADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA 302
YE+ + + E R E E+ L +++ R + E E+ RL ++ ++Q
Sbjct: 346 SQYEDIEYETEENREEGTQAEKYEQEIARLKERLRVSVRRLEEYER---RLLGQEQQMQK 402
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE 362
L+E +A LE E ++ R Q E +++ + I R A+EEE + +D A
Sbjct: 403 LLQEYQARLEDSEERLRRQQEE---KDSQMKSIISRL--------MAVEEELK-KDHADM 450
Query: 363 QLGIV---------ERRANALQ 375
Q + ERR +L
Sbjct: 451 QAVVDSKQKIIDAQERRIASLD 472
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 33.8 bits (78), Expect = 0.33
Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 18/175 (10%)
Query: 289 ARK-RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ 347
AR+ RLE EK +A ++A A ++ + A L +A A + +
Sbjct: 457 ARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDN 516
Query: 348 TALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGR------RQAETELAD 401
+A+ + AR R+A + ++ A R Q
Sbjct: 517 SAVIAAREARKAQARA-----RQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEA 571
Query: 402 AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
E + +A A +I+ AK K + E + +E KKA V AA
Sbjct: 572 EEEVDPKKAAVAAAIARAKAKKAAQQA------ASAEPEEQVAEVDPKKAAVAAA 620
Score = 30.3 bits (69), Expect = 4.4
Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 14/196 (7%)
Query: 287 EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDV 346
+ A R +KD + AAL +A ++ +A R Q
Sbjct: 475 KAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQ--ARA 532
Query: 347 QTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQL 406
+ A ++ A D + + RA A + + + E+ ++ A A A +
Sbjct: 533 RQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKK-AAVAAAIARAKA 591
Query: 407 NELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKA----MVDAARLADEL 462
+ + QA S + Q D + A + KAKKA + D
Sbjct: 592 KKAAQQAASAEPEE-------QVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPR 644
Query: 463 RAEQDHAQTQEKLRKA 478
+A A + K RKA
Sbjct: 645 KAAVAAAIARAKARKA 660
Score = 29.5 bits (67), Expect = 8.3
Identities = 39/223 (17%), Positives = 65/223 (29%), Gaps = 12/223 (5%)
Query: 243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA 302
R K A E ++ R D V L ++ + K +
Sbjct: 464 REKAAREARHKKAAEARAAKD--KDAVAAALARVKAKKAAATQP-IVIKAGARPDNSAVI 520
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE 362
A EA A + +A A I R + + Q A E + D +
Sbjct: 521 AAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKA 580
Query: 363 QLGIVERRANALQNELEESRQLLEQADRGR--RQAETELADAHEQLNELSAQATSISAA- 419
+ RA A + + + E+ ++A A A + + QA +
Sbjct: 581 AVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEP 640
Query: 420 ----KRKLEGELQTLHSDL--DELLNEAKNSEEKAKKAMVDAA 456
K + + + + N E KKA V AA
Sbjct: 641 VDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAA 683
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 34.0 bits (78), Expect = 0.35
Identities = 45/297 (15%), Positives = 109/297 (36%), Gaps = 14/297 (4%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR 357
+ + ++EAE K+L ++ AE + ++ + ++ ++ A+E R +
Sbjct: 191 KQERNEIDEAEKEYATYH-KLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQ 249
Query: 358 DDAREQLGIVERRANALQ------NELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
+ + + + RR LE+ L++ + LA+ + ++L
Sbjct: 250 EWKQLEQELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIP 309
Query: 412 QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT 471
++ A +L +L + + EL E + A + R +
Sbjct: 310 AKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLE 369
Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR-RHADAQ 530
++ + ++K+ + + + +A ++ QR+ + E E+ R
Sbjct: 370 CMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIA 429
Query: 531 KNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLA 587
N + ++ + + +R L++K ++RQ E +I AL LA
Sbjct: 430 ANSQVIDKEEVCNLYDRRDTAWQKQR------FLREKQTAFERQKTEHTKIIALRLA 480
Score = 33.3 bits (76), Expect = 0.51
Identities = 46/302 (15%), Positives = 104/302 (34%), Gaps = 25/302 (8%)
Query: 155 ARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIG 214
A I ++ + R+ + L+ +D+ A A E + A + +
Sbjct: 529 IPEELARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMA 588
Query: 215 EWKLKVDDLAAELDASQKECRNYSTELF---------------------RLKGAYEEAQE 253
EW+ + ++ EL S++ ++ RL+ +E
Sbjct: 589 EWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEE 648
Query: 254 QLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ 313
++E + + ++ L + E+AR LE + + +E A LE
Sbjct: 649 RVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELEL 708
Query: 314 EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR---DDAREQLGIVERR 370
++L + +A + R +QQL ++ LE + +L +
Sbjct: 709 HRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQ 768
Query: 371 ANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTL 430
+ EL + ++ D + ++A Q+ +L T ++ +++ E + L
Sbjct: 769 RELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGT-VAELRQRRESLKEDL 827
Query: 431 HS 432
Sbjct: 828 EE 829
Score = 30.2 bits (68), Expect = 5.3
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 14/189 (7%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKI 212
L ++A E + ++V L + ++ L A E+ A++
Sbjct: 632 LTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGN 691
Query: 213 IGEWKLKVDDLAAELDASQKE------CRNYSTELFRLKGAYEEAQEQ--------LEAV 258
I K D+L AEL+ +KE C TE + A EE Q LEA
Sbjct: 692 IERTKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQ 751
Query: 259 RRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKV 318
A E+ LDQ + +E+A L+ E +EL A + + Q E
Sbjct: 752 LEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGG 811
Query: 319 LRAQLELSQ 327
A+L +
Sbjct: 812 TVAELRQRR 820
>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein. The CorA
transport system is the primary Mg2+ influx system of
Salmonella typhimurium and Escherichia coli. CorA is
virtually ubiquitous in the Bacteria and Archaea. There
are also eukaryotic relatives of this protein. The
family includes the MRS2 protein from yeast that is
thought to be an RNA splicing protein. However its
membership of this family suggests that its effect on
splicing is due to altered magnesium levels in the cell.
Length = 291
Score = 33.4 bits (77), Expect = 0.35
Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 40/180 (22%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
+E +++LE + K+ D + LLD I + R +EK + L+ E E
Sbjct: 92 DEIRKRLENLGLGPKSPGDLLYLLLDSIVD--RYFEILEKLEEELD-----------ELE 138
Query: 309 AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR-----DDAREQ 363
LE L +L ++++ R ++ L ++ L ++ +E
Sbjct: 139 DELEDSTTNELLREL------LRLRRSLVRLRRSLAPLREVLNRLLSDDGPLIDEEEKEY 192
Query: 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH-----EQLNELSAQATSISA 418
L + L E R+ L L DA+ +LN + T +SA
Sbjct: 193 LRDLLDELERLLEMAEILRERLRS-----------LQDAYLSLLSNRLNRIMKVLTVVSA 241
Score = 29.2 bits (66), Expect = 6.6
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 503 KAIQKLEQRVRELENELDGEQRRH-----ADAQKNLRKTERRIKEL---------SFQAE 548
+ ++KLE+ + ELE+EL+ +++L + R + L
Sbjct: 125 EILEKLEEELDELEDELEDSTTNELLRELLRLRRSLVRLRRSLAPLREVLNRLLSDDGPL 184
Query: 549 EDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEI 581
D + E ++DL+D+L++ ++ + E +
Sbjct: 185 IDEEEKEYLRDLLDELERLLEMAEILRERLRSL 217
>gnl|CDD|222842 PHA01972, PHA01972, structural protein.
Length = 828
Score = 33.7 bits (77), Expect = 0.37
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 4/161 (2%)
Query: 252 QEQLEAVRR--ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
Q+ +EAV + + ADE+K + D+I E R++ + + E +
Sbjct: 3 QKCVEAVAQAAGRQLTADEIKGIEDRIKEAMRSVARKDPKGWKEESIAKRFYKTDADLAR 62
Query: 310 ALEQEENKVLRAQLELS-QANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVE 368
+ + ++ L+ AEA K I KD AL + + VE
Sbjct: 63 QELVHDAIKKKKRVALAIAKQAEATKKINEVLTADKDPAAALLGMLSRDPNEEAKFLSVE 122
Query: 369 RRANALQN-ELEESRQLLEQADRGRRQAETELADAHEQLNE 408
+R NA ++ + + D RQ +A + ++
Sbjct: 123 QRINATRDVSKAKISDFMAALDPTTRQIFAGIATGERRFDK 163
>gnl|CDD|119001 pfam10481, Cenp-F_N, Cenp-F N-terminal domain. Mitosin or
centromere-associated protein-F (Cenp-F) is found bound
across the centromere as one of the proteins of the
outer layer of the kinetochore. Most of the
kinetochore/centromere functions appear to depend upon
binding of the C-terminal par to f the molecule, whereas
the N-terminal part, here, may be a cytoplasmic player
in controlling the function of microtubules and dynein.
Length = 288
Score = 33.2 bits (75), Expect = 0.39
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL-- 479
KL+ E Q LD L + ++K + + A L E + + + EK ++ +
Sbjct: 29 KLKKEKQQRQFQLDSLEAALQKQKQKVENEKTEGANLKRENQRLMEICEHLEKTKQKISH 88
Query: 480 ETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR--RHADAQKNLRKTE 537
E Q+KE Q+ E + L KK I+KLEQ ++ ++EL+ Q+ + AD N T
Sbjct: 89 ELQVKESQVNFQEGQ---LNSCKKQIEKLEQELKRCKSELERSQQAAQSADVSLNPCSTP 145
Query: 538 RRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583
++I + + + +DL +K ++++ KR E + + A
Sbjct: 146 QKIFATPLTPSQ-YYSGSKYEDLKEKYNKEVEERKRLEAEVKALQA 190
Score = 29.8 bits (66), Expect = 4.4
Identities = 29/124 (23%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 281 RNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ 340
+ I E+E +L+ EK + Q L+ EAAL++++ KV + E + N+KR
Sbjct: 18 QKIQELEGQLDKLKKEKQQRQFQLDSLEAALQKQKQKVENEKTEGA--------NLKREN 69
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
Q+L ++ LE + + +L + E + N + +L ++ +E+ ++ ++ ++EL
Sbjct: 70 QRLMEICEHLE---KTKQKISHELQVKESQVNFQEGQLNSCKKQIEKLEQELKRCKSELE 126
Query: 401 DAHE 404
+ +
Sbjct: 127 RSQQ 130
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 33.4 bits (76), Expect = 0.44
Identities = 73/418 (17%), Positives = 166/418 (39%), Gaps = 40/418 (9%)
Query: 159 EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL 218
+ + ++ L + + E+ K L TEV+ L+ E++R + +A + +
Sbjct: 319 DMRQHLDKLKEDLTRAEQEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAG 378
Query: 219 KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGE 278
+++D+ + ++++ R L+ E QE R K + ++ L
Sbjct: 379 EIEDMRDRYEKTERKLR-------VLQKKIENLQETFRRKERRLKEEKERLRSLQTDTNT 431
Query: 279 GGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKR 338
ALE+ E AL ++E + R + + + Q+ +
Sbjct: 432 ----------------------DTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFET 469
Query: 339 YQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETE 398
Y+++ +D++ ++ Q + QL +++ + L + + R LE+A + +
Sbjct: 470 YKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEKIREK 529
Query: 399 LADAHEQLNELSAQATS------ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM 452
++L L A S + A + + +++D LL+ + +E++
Sbjct: 530 HEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDTE 589
Query: 453 VDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRV 512
++A RLA EL Q H Q++ +A + + L E K + E+ +
Sbjct: 590 MEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEEAERLEKSEAE-----EETL 644
Query: 513 RELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT 570
R+ + H + +++K E +K+L + E+ E+ Q + + QQ++
Sbjct: 645 RQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAEREQLVAQLEKSQQSLMEFQQELNA 702
Score = 30.8 bits (69), Expect = 3.0
Identities = 54/287 (18%), Positives = 121/287 (42%), Gaps = 13/287 (4%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
E +++ L +E +AL + K RA ELS+ E + Q +L+ + +
Sbjct: 265 EADRNRLDKEVEAERSALAAMKAKCDRAAQELSRKKTE----LLGLQTELETLANQDSDM 320
Query: 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQA 413
++ D +E L E+ LQ E++ R LE+ + L A E+ + +
Sbjct: 321 RQHLDKLKEDLTRAEQEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAGEI 380
Query: 414 TSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQE 473
+ K E +L+ L ++ L + E + K + LR+ Q T
Sbjct: 381 EDMRDRYEKTERKLRVLQKKIENLQETFRRKERRLK-------EEKERLRSLQTDTNTDT 433
Query: 474 KLRKALETQIKELQI--RLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
L K + ++ +I RL E + + ++ + ++ +L+ E+ Q + ++ +
Sbjct: 434 ALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSEREL 493
Query: 532 NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578
L + + +L+ + R + ER ++K+++K + +++++
Sbjct: 494 QLELLKEEVSKLASNQLKQRSDLERAHIELEKIREKHEKLEKELKRL 540
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 33.5 bits (77), Expect = 0.45
Identities = 36/198 (18%), Positives = 78/198 (39%), Gaps = 34/198 (17%)
Query: 196 NAIANAAEKKAKAI-DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ 254
+ I + E K + +I K ++D L+ +L + E EE +
Sbjct: 147 DLIDSIKEDNLKDDLESLIASAKEELDQLSKKLAELKAE-------------EEEELERA 193
Query: 255 LEAVR-RENKNLADEVKDLLDQ--IGEGGRNIHEVEKARKRL-EVEKDELQAALEEAEAA 310
L+ R L +E+ L+ + E E+ ++ L + +++L+ LE A
Sbjct: 194 LKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEA 253
Query: 311 LEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR----DDAREQLGI 366
EQ+ L Q I+ ++ K+++ +EEE+ R + +L
Sbjct: 254 HEQKLKNELALQ------------AIELQREFNKEIKEKVEEERNGRLAKLAELNSRLKG 301
Query: 367 VERRANALQNELEESRQL 384
+E+ ++ +E+ ++
Sbjct: 302 LEKALDSRSEAEDENHKV 319
Score = 32.3 bits (74), Expect = 0.93
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 400 ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
++L + S +L +L L ++ +E E + + ++ ++ ++
Sbjct: 152 IKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEE---ELERALKEKREELLSKLEEE 208
Query: 460 DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI-QKLEQRVRELENE 518
R E A +++LR E + +EL+ + +E L+ +A QKL+ + E
Sbjct: 209 LLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIE 268
Query: 519 LDGEQRR 525
L E +
Sbjct: 269 LQREFNK 275
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 33.6 bits (77), Expect = 0.46
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 32/158 (20%)
Query: 416 ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKL 475
I AK +++ L+ + K+ L ++L EQ EKL
Sbjct: 499 IEQAKTFYGEF----KEEINVLI---EKLSALEKELEQKNEHL-EKLLKEQ------EKL 544
Query: 476 RKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK 535
+K LE +++EL+ R + K ++A++ L++ V + EL K
Sbjct: 545 KKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIREL---------------K 589
Query: 536 TERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKR 573
++ K ++ ED + + + QK ++
Sbjct: 590 EKKIHKAKEIKSIEDLVKLKETKQKI---PQKPTNFQA 624
>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein.
Length = 304
Score = 32.8 bits (75), Expect = 0.47
Identities = 35/199 (17%), Positives = 68/199 (34%), Gaps = 8/199 (4%)
Query: 292 RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALE 351
RL+ + EAE A Q + + A+ E + A + + +Q+ + AL
Sbjct: 32 RLDPTPYQAALDRAEAELAAAQADAQARLARAERDRLQALVAQAAIQSEQEADAARAALR 91
Query: 352 EEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
E A A + + R N L++ L L + + L + Q A
Sbjct: 92 EALAASRGAASKAQLEAARDN-LRSALALLPISLGRIGASQATLGALLNNLQAQGLAARA 150
Query: 412 QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT 471
Q +L ++L L+ E +A + + ++ +E+
Sbjct: 151 QLDEA-------YLQLAQTAAELLRLIRAPAQGERVQSEAQLRSVQVGEEVGVGSPLMGV 203
Query: 472 QEKLRKALETQIKELQIRL 490
++ + E Q+RL
Sbjct: 204 VPFNDVEVDANLGETQLRL 222
Score = 29.8 bits (67), Expect = 4.6
Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 5/197 (2%)
Query: 383 QLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK 442
+L + D QA + A+A + AQA A + +L+ + ++ + A+
Sbjct: 28 DVLVRLDPTPYQAALDRAEAELAAAQADAQARLARAERDRLQALVAQAAIQSEQEADAAR 87
Query: 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK 502
+ +A A AA A A + L +L +I Q L NN G
Sbjct: 88 AALREALAASRGAASKAQLEAARDNLRSALALLPISL-GRIGASQATLGALLNNLQAQGL 146
Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
A +L++ +L + E R A + + + S Q E+ L+
Sbjct: 147 AARAQLDEAYLQLA-QTAAELLRLIRAPAQGERVQSEAQLRSVQVGEEV---GVGSPLMG 202
Query: 563 KLQQKIKTYKRQIEEAE 579
+ + E +
Sbjct: 203 VVPFNDVEVDANLGETQ 219
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 33.4 bits (76), Expect = 0.51
Identities = 53/314 (16%), Positives = 124/314 (39%), Gaps = 23/314 (7%)
Query: 248 YEEAQEQLEA-VRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE 306
YE ++++L+ + + ++ +L Q I E K ++++ L E
Sbjct: 251 YEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKT--------LRE 302
Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366
AL+ + NK + Q + E +++ + +++ + ++ Q D+ +QL
Sbjct: 303 KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL-- 360
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
R+ + E Q E+ R EL + Q ++L+ S + +
Sbjct: 361 --RKQGISTEQFELMNQEREKLTR-------ELDKINIQSDKLTKSVKSRKLEAQGIFKS 411
Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL 486
L+ D L+ S + + D++ + + + E ++K++ E+
Sbjct: 412 LEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEI 471
Query: 487 QIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK--NLRKTERRIKELS 544
Q R+ EN ++ ++ I+ L+ + EL L+ + ++A L K E + ++
Sbjct: 472 QERIKTEENKSIT-LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVA 530
Query: 545 FQAEEDRKNHERMQ 558
+ E ++ E
Sbjct: 531 QRIEIEKLEKELND 544
Score = 32.3 bits (73), Expect = 1.2
Identities = 53/337 (15%), Positives = 136/337 (40%), Gaps = 30/337 (8%)
Query: 157 LAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEW 216
L + S + + EK + T++ +L+ + D A K ++ I + +W
Sbjct: 245 LKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKW 304
Query: 217 KLKVDD---LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLL 273
+ D ++A +++ + + +L +LK E +E+++A++ L +++
Sbjct: 305 RALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364
Query: 274 DQIGEGGRNIHEVEKARKRLE---VEKDELQAALE----EAEAALEQEENKV-----LRA 321
+ E EK + L+ ++ D+L +++ EA+ + E + L
Sbjct: 365 ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQ 424
Query: 322 QLELSQANAEAQKN---IKRYQQQLKDVQTALEE-----EQRARDDAREQLGIVERRANA 373
+ S++ N +K +QL + + E D+ +E++ E ++
Sbjct: 425 NITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSIT 484
Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
L+ +++ + + + + + E EL++A+ + + E++ L +
Sbjct: 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEEN---ERELVAQRIEIEKLEKE 541
Query: 434 LDELLNEAKNS----EEKAKKAMVDAARLADELRAEQ 466
L++L +K S E+ + + L +L ++
Sbjct: 542 LNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKR 578
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 33.1 bits (76), Expect = 0.53
Identities = 15/88 (17%), Positives = 35/88 (39%)
Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN 532
++LR+AL KEL+ ++ + + K L++ + +L+ E+D + + +
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 533 LRKTERRIKELSFQAEEDRKNHERMQDL 560
+ + E + E L
Sbjct: 62 PAASGEGGGGEEEEEEAKAEAAEFRAYL 89
Score = 29.6 bits (67), Expect = 7.0
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 544 SFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA---LNLAKFRKAQQELEEAE 600
+E E + D L+++I +I+ EE+ A + EE E
Sbjct: 17 KLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEE 76
Query: 601 ERADLAEQAVSKIRTKGGSVARGSSPL 627
E A + + +R ++A L
Sbjct: 77 EAKAEAAEFRAYLRGGDDALAEERKAL 103
Score = 29.2 bits (66), Expect = 9.1
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTK-QRLATEVEDLQLEVDRANAIANAAEKKAKA 208
R L E + E EK + L E++ L E+DR + + E K A
Sbjct: 5 REALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAA 64
Query: 209 IDKIIGEWKLKVDDLAAELDASQ 231
+ G + + + A +
Sbjct: 65 SGEGGGGEEEEEEAKAEAAEFRA 87
>gnl|CDD|217894 pfam04102, SlyX, SlyX. The SlyX protein has no known function.
It is short less than 80 amino acids and is found close
to the slyD gene. The SlyX protein has a conserved
PPH(Y/W) motif at its C-terminus. The protein may be a
coiled-coil structure.
Length = 68
Score = 30.2 bits (69), Expect = 0.54
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 17 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL--QLEVDRANAIANAAE 67
L+ RLA E+TIE LNQ V ++ RL ++ L +L+ ++ IA+ AE
Sbjct: 9 LEIRLAFQEDTIEELNQVVAEQQRQIDRLQRQLRLLVERLKEVESSNIASQAE 61
Score = 30.2 bits (69), Expect = 0.54
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL--QLEVDRANAIANAAE 203
L+ RLA E+TIE LNQ V ++ RL ++ L +L+ ++ IA+ AE
Sbjct: 9 LEIRLAFQEDTIEELNQVVAEQQRQIDRLQRQLRLLVERLKEVESSNIASQAE 61
>gnl|CDD|219581 pfam07795, DUF1635, Protein of unknown function (DUF1635). The
members of this family include sequences that are parts
of hypothetical proteins expressed by plant species. The
region in question is about 170 amino acids long.
Length = 214
Score = 32.6 bits (74), Expect = 0.55
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 311 LEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERR 370
+E+ + EL Q A + ++++ +Q+ + L++ + RD+A EQL +
Sbjct: 3 IEELRQSLQYTTFELEQTKMVANEELRKHDEQVIQLLDLLKKTIKERDEALEQLQRLLFD 62
Query: 371 ANALQNELEESRQ 383
N LQ E+ +Q
Sbjct: 63 TNFLQQHQEDEQQ 75
>gnl|CDD|150341 pfam09641, DUF2026, Protein of unknown function (DUF2026). This
protein of approx. 100 residues is found in bacteria. It
contains up to five alpha helices and up to seven beta
strands and is probably monomeric. Its function is
unknown. It is cited as a major prophage head protein,
so might generally be of viral origin.
Length = 204
Score = 32.5 bits (74), Expect = 0.57
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 133 PFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQK----VIALEKTKQRLATEVEDL 188
P E P PR+ +Q RL + + + L Q Q LA D
Sbjct: 97 PIFPEAFAARPGDAPLPRKMMQRRLDDMAPSPDDLKQSGDFFYYPNPDLTQELADHFFDS 156
Query: 189 QLEVDRANAIANAAEKKAKAIDKII 213
QL D N K+ K +
Sbjct: 157 QLNADLLNVATAWYGKRPKRMAASF 181
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 33.4 bits (77), Expect = 0.57
Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 32/165 (19%)
Query: 149 PRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKA 208
P L+ L +EE + L ++ +E+L++ ++ E+
Sbjct: 745 PSAPLKVVLVGSEELEDRLEANEDDIKGL-----ANLEELEI-------LSPDPEEPPVE 792
Query: 209 IDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADE 268
+ ++G +L + LA +D + EL RL+ E+ +++++ + K L++E
Sbjct: 793 VTAVVGGAELFLP-LAGLID--------LAAELARLEKELEKLEKEIDRI---EKKLSNE 840
Query: 269 VKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ 313
+ VEK +++L + +L LEE A L+
Sbjct: 841 -GFVAKA------PEEVVEKEKEKLAEYQVKLA-KLEERLAVLKA 877
Score = 29.1 bits (66), Expect = 9.9
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL- 486
+ + E+L+ A+V A L L D A +L K LE KE+
Sbjct: 772 GLANLEELEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEID 831
Query: 487 --QIRLD-------------EAENNALKGGKKAIQKLEQRVRELEN 517
+ +L E E L + + KLE+R+ L+
Sbjct: 832 RIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLKA 877
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 32.6 bits (75), Expect = 0.58
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 11/222 (4%)
Query: 244 LKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAA 303
L+ ++A+E+LE + + + + ++ R I +E+ +R E
Sbjct: 6 LEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATALEK 65
Query: 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQ 363
LEEAE A ++ E R + L + + + +++ + QLK+ + EE R ++ +
Sbjct: 66 LEEAEKAADESE----RGRKVLENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARK 121
Query: 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKL 423
L +VE +LE + + E A+ + E EL L L S +
Sbjct: 122 LVVVEG-------DLERAEERAEAAESKIVELEEELKVVGNNLKSLEVSEEKASQREDSY 174
Query: 424 EGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465
E +++ L L E A+ +E +K + RL DEL AE
Sbjct: 175 EEKIRDLTEKLKEAETRAEFAERSVQKLEKEVDRLEDELLAE 216
Score = 31.1 bits (71), Expect = 1.5
Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 39/256 (15%)
Query: 291 KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ---KNIKRYQQQLKDVQ 347
K+LE E D+ + LEEA+ LE+ E + +A+ E++ N Q ++++R +++L
Sbjct: 4 KQLEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATAL 63
Query: 348 TALEEEQRARDDAREQLGIVERRANA-------LQNELEESRQLLEQADRGRRQAETELA 400
LEE ++A D++ ++E R+ L+ +L+E++++ E+ADR + +L
Sbjct: 64 EKLEEAEKAADESERGRKVLENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARKLV 123
Query: 401 DAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLAD 460
L +A + + +LE EL+ + ++L L + SEEKA
Sbjct: 124 VVEGDLERAEERAEAAESKIVELEEELKVVGNNLKSL----EVSEEKA------------ 167
Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
+Q ++ E +I++L +L EAE A + QKLE+ V LE+EL
Sbjct: 168 --------SQREDS----YEEKIRDLTEKLKEAETRAEFAERSV-QKLEKEVDRLEDELL 214
Query: 521 GEQRRHADAQKNLRKT 536
E+ ++ + L +T
Sbjct: 215 AEKEKYKAISEELDQT 230
Score = 29.5 bits (67), Expect = 4.5
Identities = 48/200 (24%), Positives = 101/200 (50%), Gaps = 10/200 (5%)
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR-AEQDHAQTQEKLRKAL 479
++LE EL L+E + + +E++A+KA + A L ++ E+D +++E+L AL
Sbjct: 4 KQLEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATAL 63
Query: 480 ETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERR 539
E +++E + DE+E K + K ++++ +LE +L + +A + + R+
Sbjct: 64 E-KLEEAEKAADESER-GRKVLENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARK 121
Query: 540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQI-------EEAEEIAALNLAKFRKA 592
+ + E + E + + +L++++K + E+A + K R
Sbjct: 122 LVVVEGDLERAEERAEAAESKIVELEEELKVVGNNLKSLEVSEEKASQREDSYEEKIRDL 181
Query: 593 QQELEEAEERADLAEQAVSK 612
++L+EAE RA+ AE++V K
Sbjct: 182 TEKLKEAETRAEFAERSVQK 201
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 33.1 bits (76), Expect = 0.59
Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 5/190 (2%)
Query: 338 RYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAET 397
L V A + R EQ+ L R EQ R +
Sbjct: 7 ILLILLLLVNLAFIRQLLLRLGRLEQMLGELAAVLEQLLLLLAFRAEAEQLRTFARSLQA 66
Query: 398 ELADAHEQLNELSAQ-ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
+ ++LNEL A+ + ++ +L+ +++L E A E+ + + +
Sbjct: 67 LNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELN 126
Query: 457 RLADELRAEQDHAQTQEKLRKALETQI-KELQIRLDEAENNALKGGKKAIQKLEQRVREL 515
+ + + + + EK R+ LE +I + + R E + IQ+L Q L
Sbjct: 127 QQNLK-QLLKPLREVLEKFREQLEQRIHESAEERSTLLEE--IDRLLGEIQQLAQEAGNL 183
Query: 516 ENELDGEQRR 525
L G + R
Sbjct: 184 TAALKGNKTR 193
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 32.8 bits (75), Expect = 0.62
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 241 LFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDEL 300
L + + +EA+ L+ ++E + + ++ RN E R+R E++++E
Sbjct: 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEE 84
Query: 301 QAA-----LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
+ L+ L+ EN++ + LS E ++ K+ +L V E+
Sbjct: 85 RLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQ-- 142
Query: 356 ARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETE------LADAHEQLNEL 409
AR+ L L ELEE + + E E LA A +++
Sbjct: 143 ----ARKLL------LKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASE 192
Query: 410 SAQATSIS 417
+A S+S
Sbjct: 193 TASDLSVS 200
Score = 31.6 bits (72), Expect = 1.6
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 21/185 (11%)
Query: 288 KARKRLEVEKDE-LQAALEEAEAALEQEENK----VLRAQLELSQANAEAQKNIKRYQQQ 342
K R+RL E + LQ A +EAE LE + +LR + + Q ++ ++R +++
Sbjct: 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEER 85
Query: 343 LKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
L + L+ D+ QL E+ +A + ELEE +Q + EL
Sbjct: 86 LVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELE----------KQLDNELYRV 135
Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK-NSEEKAKKAMVDAA-RLAD 460
L A+ + +LE E ++ EA +E KA+ + A R+A
Sbjct: 136 -AGLTPEQARKLLLKLLDAELEEEKAQRV---KKIEEEADLEAERKAQNILAQAMQRIAS 191
Query: 461 ELRAE 465
E ++
Sbjct: 192 ETASD 196
>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 32.8 bits (75), Expect = 0.63
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 26/164 (15%)
Query: 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD--AHEQLN---E 408
RE+ + A L+ L E +L E+ R +L D
Sbjct: 138 LLLEGVIRERAKLKALLAERLERALIELEELEERNRIAR-----DLHDSVGQSLTAISML 192
Query: 409 LSAQATSISAAKRKLEGELQTLHSDLDELLNEAKN-------------SEEKAKKAMVDA 455
L+ K + EL+ + L E L E + +A +A++
Sbjct: 193 LALLLLLADEDAEKAQEELKEIEKLLREALQEVRALVRDLRPVELEGLGLVEALRALLAD 252
Query: 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK 499
+ + E+L E + +I + EA NA++
Sbjct: 253 FEERTGITVDLSLGSELERLPPEAEDAL--FRI-VQEALTNAIR 293
>gnl|CDD|182488 PRK10476, PRK10476, multidrug resistance protein MdtN; Provisional.
Length = 346
Score = 32.7 bits (75), Expect = 0.71
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
+ + +A+A L + AQ+ +Q + +A+++ + +A E+ +RAR +A
Sbjct: 85 ELTVAQAQADLA-----LADAQIMTTQRSVDAERS---------NAASANEQVERARANA 130
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQ 405
+ +ER L + S Q ++QA +R AE L A Q
Sbjct: 131 KLATRTLERLE-PLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQ 174
>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 368
Score = 32.5 bits (75), Expect = 0.71
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 579 EEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSP 626
+EIA+L + + QEL + +L + +++IR G VA SP
Sbjct: 93 DEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSP 140
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.8 bits (73), Expect = 0.76
Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 501 GKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL 560
+A+ KL+ R+ +L+ EL+ ++R A+ Q + K ++ R+ E +L
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEK-----------LKKGREETEERTEL 108
Query: 561 VDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
+++L+Q K K+ E E+ + + K ++E + A+E A+
Sbjct: 109 LEELKQLEKELKKLKAELEKYEKNDPERIEKLKEETKVAKEAAN 152
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 32.7 bits (75), Expect = 0.77
Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 38/224 (16%)
Query: 206 AKAIDKIIGEWKLKVDDLAAELDASQ-KECRNYSTELFRLKGAYEEAQEQLEAVRRENKN 264
A DK+ + V +L S+ + ++ F L +EE + + A +N +
Sbjct: 361 AIEKDKVFFNFFANVK---IKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFD 417
Query: 265 LADEVKDLLDQIGEGGRNIHEVEKARKRL-----------------EVEKDELQAALEEA 307
+ ++ L I ++ E+ L D L + + +
Sbjct: 418 TPEALQALQKLISATNTYLNSGEQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQNS 477
Query: 308 EAALEQEENKVLRAQLEL-SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366
+ + +L A L + A+ +K K + L+ + RD+ LGI
Sbjct: 478 TSENFKP---LLEALLRFRDEVRDAAKAEMKLISLD-KKKKQLLQLCDKLRDEWLPNLGI 533
Query: 367 -VERR-----------ANALQNELEESRQLLEQADRGRRQAETE 398
+E + LQ E EE L EQ + + + E
Sbjct: 534 RIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEE 577
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 32.7 bits (75), Expect = 0.77
Identities = 42/242 (17%), Positives = 99/242 (40%), Gaps = 49/242 (20%)
Query: 408 ELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKK-AMVDAAR-LADELRAE 465
EL+ Q ++ ++ +++T + +++E KN E A+K D A ++AE
Sbjct: 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ--RKKNGENIARKQNKYDELVEEAKTIKAE 235
Query: 466 QDHAQTQEKLRKALETQIKELQIRLDEAENN---------ALKGGKKAIQKLE------- 509
+ L ++ L + +++ +K + QK+
Sbjct: 236 IEE----------LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGG 285
Query: 510 ------QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDK 563
Q++ E + + + + + Q +L K + I EL +E + +++ +L +K
Sbjct: 286 VCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNK 345
Query: 564 LQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELE-----EAEERADLAEQAVSKIRTKGG 618
+ ++ +++A+++ + A +EL+ AEE A L ++ ++TK
Sbjct: 346 ISTNKQSLITLVDKAKKV--------KAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397
Query: 619 SV 620
V
Sbjct: 398 LV 399
Score = 31.1 bits (71), Expect = 2.4
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 551 RKNHERMQDL---VDKLQQKIKTYKRQIEEAEEIAALNLAKFR-KAQQELEEAEE 601
R+ ++++Q L +D +QQ+IKTY + IEE + N+A+ + K + +EEA+
Sbjct: 177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKT 231
Score = 30.8 bits (70), Expect = 3.4
Identities = 40/233 (17%), Positives = 92/233 (39%), Gaps = 26/233 (11%)
Query: 220 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG 279
+ L ++D Q++ + Y+ + + E + + E A +K ++++ +
Sbjct: 183 IQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTD- 241
Query: 280 GRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL------------SQ 327
E+ L ++ ++ AAL + A + ++K+ + Q + +Q
Sbjct: 242 -----ELLN----LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQ 292
Query: 328 ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ 387
+E I + + +LK++Q +LE+ D A ++L + N +L E + +
Sbjct: 293 QISEGPDRITKIKDKLKELQHSLEKL----DTAIDELEEIMDEFNEQSKKLLELKNKIST 348
Query: 388 ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
+ + + EL A+ + KL+ EL + EL+ E
Sbjct: 349 NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Validated.
Length = 339
Score = 32.4 bits (75), Expect = 0.89
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 27/94 (28%)
Query: 243 RLKGAYEEAQ--EQLEAVRRENKNLAD--EVKDLLDQIG--------EGGRNIHEVEKAR 290
A A E LEA+R K L E+ +LL +G E G I+E+
Sbjct: 11 EALAAIAAASDLEALEALR--VKYLGKKGELTELLKGLGKLPPEERKEAGALINEL---- 64
Query: 291 KRLEVEKDELQAALEEAEAALEQEENKVLRAQLE 324
K ++AALEE + LE L A+L
Sbjct: 65 ------KQAIEAALEERKEELEAAA---LNARLA 89
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 32.3 bits (75), Expect = 0.96
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 253 EQLEAVRR--ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE---- 306
E EAV+ + +V +LL E+++ R+ L+ E +ELQA
Sbjct: 9 ENPEAVKEALAKRGFPLDVDELL-----------ELDEERRELQTELEELQAERNALSKE 57
Query: 307 -AEAALEQEENKVLRAQL-ELSQANAEAQKNIKRYQQQLKDVQTAL 350
+A + E+ + L A++ EL + + + + +L+++ +
Sbjct: 58 IGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103
Score = 31.6 bits (73), Expect = 1.8
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 39/109 (35%)
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNS 444
L + D RR+ +TEL + + N LS + I AKRK
Sbjct: 30 LLELDEERRELQTELEELQAERNALSKE---IGQAKRK---------------------- 64
Query: 445 EEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493
E A+ + + L +E+ KALE ++ EL+ L+E
Sbjct: 65 GEDAEALIAEVKELKEEI--------------KALEAELDELEAELEEL 99
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 32.1 bits (74), Expect = 1.1
Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 32/262 (12%)
Query: 172 IALEKTKQRLATEVEDL-----QLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
+ +EK Q L ++++ +L++D A +++ ID++ D L E
Sbjct: 252 LDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQER---IDQL-------YDILERE 301
Query: 227 LDASQ---KECRNYSTELFRLKGAYEEAQEQLEAVRRE---NKNLADEVKDLLDQIGEGG 280
+ A + K L K +E +E+++ V++ N++ + V+ L Q+
Sbjct: 302 VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLE 361
Query: 281 RNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ---ANAEAQKNIK 337
+ E+ + E+ ELQ LEE LE+ E + + L EA++ ++
Sbjct: 362 KQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLE 421
Query: 338 RYQQQLKDVQTALEEEQRAR-----DDAREQLGIVERRANALQNELEESRQLLEQADRGR 392
RY+ +L +++ LE ++ +D E V AL ELEE +E +R
Sbjct: 422 RYRNKLHEIKRYLE---KSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLL 478
Query: 393 RQAETELADAHEQLNELSAQAT 414
+A ++ E+ EL AT
Sbjct: 479 EEATEDVETLEEETEELVENAT 500
Score = 30.2 bits (69), Expect = 4.1
Identities = 62/363 (17%), Positives = 154/363 (42%), Gaps = 59/363 (16%)
Query: 241 LFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDEL 300
+ K E + L+ + + + + +E+++LL+ +++
Sbjct: 100 FRKAKHEINEIESLLDLIEEDIEQILEELQELLES---------------------EEKN 138
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
+ +E+ + + +L + A E +K ++ +++ E +A
Sbjct: 139 REEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD--YVEA 196
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
RE L + L+ EL Q++E+ ++ +TEL D QL EL A +
Sbjct: 197 REIL-------DQLEEELAALEQIMEEIPELLKELQTELPD---QLQELKAGYRELVEEG 246
Query: 421 -----RKLEGELQTLHSDLDELLNEAKNSE-EKAKKAMVDAAR--------LADELRAEQ 466
+E E+Q L +DE L + + ++A++ + L E++A +
Sbjct: 247 YHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARK 306
Query: 467 DHAQTQEKLRKALE---TQIKELQI---------RLDEAENNALKGGKKAIQKLEQRVRE 514
+ + L LE Q KEL+ L+E+E +++ +K ++ LE++ E
Sbjct: 307 YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE 366
Query: 515 LENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 574
+ + ++ +++ Q+ L + ++++E+ + E+ + + ++ + ++K++ Y+ +
Sbjct: 367 ITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426
Query: 575 IEE 577
+ E
Sbjct: 427 LHE 429
>gnl|CDD|223716 COG0643, CheA, Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal
transduction mechanisms].
Length = 716
Score = 32.3 bits (74), Expect = 1.1
Identities = 76/351 (21%), Positives = 127/351 (36%), Gaps = 41/351 (11%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL------------QLEVDRANAIAN 200
L+ L EAEE +++L Q ++ALE + L + + L + +A+
Sbjct: 10 LEDFLEEAEELLQALEQALLALEPDPEDLDL-LNAIFRAAHTLKGGAGTLGLTTLAELAH 68
Query: 201 AAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 260
A E A+ GE +L + L L+A +E L+A+
Sbjct: 69 AMEDLLDALRN--GELELTSELLDLLLEALDAL------------------EEMLDAIED 108
Query: 261 ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLR 320
+ ++ DLLD + + A E+ E +AA+E A AAL +E ++ L
Sbjct: 109 G-EEDEEDDADLLDLLAQLAAGEGLEPGAAD---AEEAEEEAAVEPALAALNEELSEGLV 164
Query: 321 AQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE 380
LEL +A A A + EE AR L + L E+
Sbjct: 165 PALELPEAEAAAAAAPELEAPPYA--IDVALEEDAPLKSARAAL--LLEELEELGEEIAA 220
Query: 381 SRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
+ LE + E+E+ A EQ EL + +LE L ++L EL
Sbjct: 221 TLPDLEDLEAEAAFEESEVVLATEQDEELIRDVLELVVEAEELEIAAVELDAELLELAES 280
Query: 441 AKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491
+ +++ A + A+ + + A IR+D
Sbjct: 281 EQAADDVLAAQAEPLAEKSAAEAAKLSALEAAPAAKAAAAAAGASSSIRVD 331
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 31.4 bits (72), Expect = 1.1
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 260 RENKNLADEVKDLLDQIGEGGRNIHE-VEKARKRLEVEKDELQAALEEAEAALEQEENKV 318
++ + LA + +L ++G I + VEKA + E K +L+ EEA A LE+E K
Sbjct: 123 KDKEALAKRLYELGKKLGISKEEIKKAVEKALEEQEAFKKDLRKKGEEALAYLEEEGKKG 182
>gnl|CDD|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport
and metabolism].
Length = 322
Score = 31.9 bits (73), Expect = 1.2
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQL-ELSQANAEAQKNIKRYQQQLKDVQTAL-----E 351
D LE+ E LE E+++L + E + E ++++ ++ L ++ L
Sbjct: 150 DNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARR 209
Query: 352 EEQRARDDAREQLGIVERRANALQNELEESRQLLEQ 387
++ RE L V L LE R+ L
Sbjct: 210 PLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSS 245
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 32.0 bits (73), Expect = 1.3
Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 17/274 (6%)
Query: 335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQ 394
I ++ + ++ AL+ + E L A EL E + + + + +
Sbjct: 645 LIVDFRGLKEALKKALKLYSNEGE---EDLKEALEEA---IEELVEKLEDVLNEFKEQSE 698
Query: 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD 454
L DA E L + + + K L L + N K + + +
Sbjct: 699 DIGYLEDAGELLRDFAPELEIKVERGNK---ILAKLFGRFLKAFNALK-KLYEFAYTLEE 754
Query: 455 AARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA-----LKGGKKAIQKLE 509
+ ++L + Q K + + E+ A + + I K E
Sbjct: 755 EIQYLEDLLKARLEKDYQSKYLD--LIDNLNDAREIKDKESKAIDLDDIDFELELIGKQE 812
Query: 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
+ + L ++ + ER IKE + +K ER+ + +++ + K
Sbjct: 813 INIDYILELLQTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKL 872
Query: 570 TYKRQIEEAEEIAALNLAKFRKAQQELEEAEERA 603
++EE +A + A++E EE A
Sbjct: 873 DTAEKLEELYILAKKEEEFKQFAEEEGLNEEELA 906
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 32.1 bits (73), Expect = 1.3
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 293 LEVEKDELQAALEEAEAALE--QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
+V+K E Q E Q R + EL +K I R +++++ + L
Sbjct: 520 SDVQKQENQTDEAPKENNANSAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQL 579
Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
+ A E+LG E + + EL Q A G + E +A EQL ++
Sbjct: 580 AQ-------AEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632
Query: 411 AQATS 415
+ S
Sbjct: 633 LEGQS 637
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.
Length = 477
Score = 31.6 bits (73), Expect = 1.4
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 246 GAYEEAQEQLEAVRRENK--------NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK 297
G + + VRR+ L ++V +LL++I E N++ EKA++ LE E
Sbjct: 352 GPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEEIQE---NLY--EKAKEFLE-EN 405
Query: 298 DELQAALEEAEAALEQEENKVLRA 321
LEE + A+E E+ ++A
Sbjct: 406 TVEVDTLEEFKEAIE-EKGGFVKA 428
>gnl|CDD|219631 pfam07902, Gp58, gp58-like protein. Sequences found in this family
are derived from a number of bacteriophage and prophage
proteins. They are similar to gp58, a minor structural
protein of Lactococcus delbrueckii bacteriophage LL-H.
Length = 601
Score = 31.8 bits (72), Expect = 1.4
Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 26/228 (11%)
Query: 346 VQTALEEEQRARDDAREQLGIVERRANALQNELEES-RQL---LEQADRGRRQAETELAD 401
V+TA R +D ++L ++ ++ E +++ RQL + G + T +D
Sbjct: 121 VETAGGIATRISEDTDKKLALINESIAGIRREYQDADRQLSSSYQAGINGLKA--TMASD 178
Query: 402 AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE 461
E+ A A +S K + E++ L AK + + ++L D
Sbjct: 179 KIGLQAEIQATAQGLSQ---KYDNEIRQLS---------AKITTTSSGTTEAYESKLDD- 225
Query: 462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDG 521
LRAE + + +R LE++I LQ + + + I E V ++ LD
Sbjct: 226 LRAEFTR--SNQGMRTELESKISGLQ----STQQSTAHQISQEISNREGAVSRVQQTLDS 279
Query: 522 EQRRHADAQKNLRKTERRIKEL-SFQAEEDRKNHERMQDLVDKLQQKI 568
QRR DA+ N + + L S + + K R L + QK+
Sbjct: 280 YQRRLQDAEDNYSSLTQTVAGLQSTVSGPNSKIQSRFTQLAGLIDQKV 327
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 31.9 bits (72), Expect = 1.4
Identities = 61/310 (19%), Positives = 132/310 (42%), Gaps = 20/310 (6%)
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKD 345
VE + +LE + E Q A +++E A + E Q + A + +++L+
Sbjct: 73 VEDLKLKLEKAEKEEQQAKQDSELAKLRAEELEQGIQELEVERYITATAELDSVKEELRK 132
Query: 346 VQTALEEEQRARDDAREQLGI-------VERRANALQNELEESRQLLEQADRGRRQAETE 398
++ + RD A ++ E++ L E+ ++ LE+A +AE E
Sbjct: 133 IRQEYDALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEEE 192
Query: 399 LAD-AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAAR 457
A E+ + + A+++LE Q L + D ++E ++ + +
Sbjct: 193 RIGAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEISIMA 252
Query: 458 LADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQR------ 511
+ E + A+ + E ++ L L L+ KK +++L ++
Sbjct: 253 SVASVLKELEEAKANLEKAAEEEKSLRNLVESL----KQELEEEKKELEELREKEGEAEE 308
Query: 512 -VRELENELDG-EQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
LE EL+ + + + A++ + + ++++ S +AEE RK E ++ + KL+++ +
Sbjct: 309 AASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAE 368
Query: 570 TYKRQIEEAE 579
K +E AE
Sbjct: 369 QTKAALETAE 378
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 31.6 bits (73), Expect = 1.4
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 21/107 (19%)
Query: 505 IQKLEQRVRELENEL-DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDK 563
++ LE+R ELE L D E +D QK RK + EL + +V+
Sbjct: 8 LEALEERYEELEALLSDPEV--ISD-QKRFRKLSKEYAEL--------------EPIVEA 50
Query: 564 LQQKIKTYKRQIEEAEEIAALNL-AKFRK-AQQELEEAEERADLAEQ 608
++ + + +EEA+E+ + R+ A++EL+E EER + E+
Sbjct: 51 YREYKQA-QEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEE 96
>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.
Length = 1157
Score = 32.0 bits (73), Expect = 1.4
Identities = 74/342 (21%), Positives = 119/342 (34%), Gaps = 82/342 (23%)
Query: 150 RRKLQ-ARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKA 208
R LQ RLA+ E +E+ + A E +QRLA + + L A + A ++
Sbjct: 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ-- 513
Query: 209 IDKIIGEWKLKVDDLAAELDASQKE--CRNYSTELFRLKGAY--EEAQEQLEAVRRENKN 264
D L L + + Y+ L+ L G+ A L + R N
Sbjct: 514 -----------ADALMRRLAQQKPNDPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWN 561
Query: 265 LADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE 324
+++L ++ +E A RL E EAEA L Q+ R L
Sbjct: 562 --SNIQELAQRLQSD----QVLETAN-RLRDSGKE-----AEAEALLRQQPPST-RIDLT 608
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR----DDAREQLGIVERRANALQNELEE 380
L+ + QQ D A QR +A +LG++E
Sbjct: 609 LAD-----------WAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI--------- 648
Query: 381 SRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE------GELQTLHSDL 434
A+ +LA A QL +L A A +R++ G+
Sbjct: 649 --------------AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694
Query: 435 DELLNEAKNSEEKAKKAMV--DAARLA----DELRAEQDHAQ 470
+ L+ +AK+ + A+V DAAR +A + +
Sbjct: 695 NRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 31.2 bits (71), Expect = 1.4
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 333 QKNIKRYQQQLKDVQTALEEEQRARDDAR-EQLGIVERRANALQNEL 378
Q+ +K Q+ +K+ Q E Q + D + ++L + Q EL
Sbjct: 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQREL 117
Score = 30.0 bits (68), Expect = 3.4
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 554 HERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEA 599
E+M+ +LQ+ +K ++++ EA+E + ++ K +K Q++ E
Sbjct: 71 QEKMK----ELQKMMKEFQKEFREAQE--SGDMKKLKKLQEKQMEM 110
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 31.4 bits (71), Expect = 1.4
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 388 ADRGRRQAETELADAHEQ-LNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEE 446
+ +AE E ++ E+ L E + + K + EL+ +H+D++++ E K S+
Sbjct: 15 KLKDEIKAEEEALESEEKHLKEYDKEMEELLEEKMQHVEELRQIHADINDMETEIKQSKS 74
Query: 447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
+ ++ M AR+ E ++ KL LE
Sbjct: 75 ELERRMGKIARMHGEYNPLKESINEMRKLELGLE 108
>gnl|CDD|219018 pfam06419, COG6, Conserved oligomeric complex COG6. COG6 is a
component of the conserved oligomeric golgi complex,
which is composed of eight different subunits and is
required for normal golgi morphology and localisation.
Length = 615
Score = 31.9 bits (73), Expect = 1.4
Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
E ++L++ E+ + + +KR + L + EE + ++A++ + A+ L
Sbjct: 26 EKELLKSNGEILKEFGPVAEQLKRIGEDLSKLNNTCEEMKSQLNNAKQDTKDLLEEASTL 85
Query: 375 QNE---LEESRQLLE 386
+ +E ++LL+
Sbjct: 86 MEQKRQIELKKKLLK 100
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 31.5 bits (72), Expect = 1.5
Identities = 62/292 (21%), Positives = 125/292 (42%), Gaps = 33/292 (11%)
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
+ LE+AE + + L L+ + + +R ++ L +++ L+EE+ +
Sbjct: 9 PSLLEKAEEIRSEGGIERLERSLD------DLPELSQRNEEILDEIKELLDEEESEDEQL 62
Query: 361 REQLGIVERRAN------ALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT 414
R + G R L+ EL + R LEQA Q ++L + E L LS
Sbjct: 63 RAKYGERWTRPPSSELTAELREELRKYRGYLEQASESDAQLRSKLEEHEENLELLSGPEE 122
Query: 415 SISAA-----------KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMV--DAARLADE 461
+ A + L+ L + L+EL E + E+ K+ D ++L
Sbjct: 123 ELEALLPSSSPSKTPEVSEQISRLRELLNKLNELKAEREKLLEELKEKAQDDDISKLLIA 182
Query: 462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE--L 519
L + + ++ + L+ + LQ R+++ + ++ ++++++ E E
Sbjct: 183 L-NKLGSSNEEQLFEEELK-KFDPLQERVEQNLSKQ----EELLKEIQEANEEFLQERKS 236
Query: 520 DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
D EQ+ + L + KELS EE K + + ++++KLQ+K+K +
Sbjct: 237 DSEQKEREKVLQKLENAYDKYKELSSNLEEGLKFYNDLLEILEKLQKKVKDF 288
>gnl|CDD|185272 PRK15374, PRK15374, pathogenicity island 1 effector protein SipB;
Provisional.
Length = 593
Score = 31.9 bits (72), Expect = 1.5
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE----- 352
E Q AL EA+ A + E + + S +A A+K + + Q +L+ + A
Sbjct: 127 KEFQTALGEAQEATDLYEASIKKTDTAKSVYDA-AEKKLTQAQNKLQSLDPADPGYAQAE 185
Query: 353 --EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
++A +A E +++ +A +++ E+AD + + +
Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKAD--------NILTKFQGTANAA 237
Query: 411 AQATSISAAKRKLEG--ELQTLHSDLDELLNEAKNSEEKAKK--AMVDAARLADELRAEQ 466
+Q + L L L + E++ KN+EE + A+ +A + + E+
Sbjct: 238 SQNQVSQGEQDNLSNVARLTMLMAMFIEIV--GKNTEESLQNDLALFNALQEGRQAEMEK 295
Query: 467 DHAQTQEKLRKALET 481
A+ QE+ RKA ET
Sbjct: 296 KSAEFQEETRKAEET 310
>gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner
mitochondrial membrane Mg2+ transporters Mfm1p and
Mrs2p-like family. A eukaryotic subfamily belonging to
the Escherichia coli CorA-Salmonella typhimurium
ZntB_like family (EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This functionally diverse subfamily includes
the inner mitochondrial membrane Mg2+ transporters
Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human
MRS2/ MRS2L. It also includes a family of Arabidopsis
thaliana proteins (AtMGTs) some of which are localized
to distinct tissues, and not all of which can transport
Mg2+. Structures of the intracellular domain of two
EcCorA_ZntB-like family transporters: Vibrio
parahaemolyticus and Salmonella typhimurium ZntB form
funnel-shaped homopentamers, the tip of the funnel is
formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, as in some
ZntB family proteins, may be associated with the
transport of different divalent cations, such as zinc
and cadmium. The functional diversity of MIT
transporters may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 323
Score = 31.4 bits (72), Expect = 1.6
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 478 ALETQIKELQIR----LDEAENN-------ALKGGKKAIQKLEQRVRELENELDGEQRRH 526
LE ++K L+ LDE + L K+ + +LE RV+++ + L+ E
Sbjct: 125 HLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVELETRVQKVRDALE-ELLDD 183
Query: 527 ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL-------VDKLQQKIKTYKRQIEEAE 579
+ ++ T++ ++ +HE ++ L VD+L K++ + I++ E
Sbjct: 184 DEDMADMYLTDKAAGPERLESSRKEDDHEEVEMLLEAYLQQVDELLNKLEELREYIDDTE 243
Query: 580 EIAALNLAKFR 590
E+ L L R
Sbjct: 244 ELINLILDSRR 254
>gnl|CDD|233067 TIGR00641, acid_CoA_mut_N, methylmalonyl-CoA mutase N-terminal
domain. Methylmalonyl-CoA mutase (EC 5.4.99.2)
catalyzes a reversible isomerization between
L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an
adenosylcobalamin cofactor. It may be a homodimer, as in
mitochondrion, or a heterodimer with partially
homologous beta chain that does not bind the
adenosylcobalamin cofactor, as in Propionibacterium
freudenreichii. The most similar archaeal sequences are
separate chains, such as AF2215 abd AF2219 of
Archaeoglobus fulgidus, that correspond roughly to the
first 500 and last 130 residues, respectively of known
methylmalonyl-CoA mutases. This model describes the
N-terminal domain subfamily. In a neighbor-joining tree,
AF2215 branches with a bacterial isobutyryl-CoA mutase,
which is also the same length. Scoring between the noise
and trusted cutoffs are the non-catalytic, partially
homologous beta chains from certain heterodimeric
examples of 5.4.99.2.
Length = 524
Score = 31.7 bits (72), Expect = 1.6
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
+ RA E+EE + + +RG + E A A Q S + + K +LE E
Sbjct: 380 IYERAWKYIQEIEEMGGMAKAIERGIPKLRIEEAAARTQARIDSGRQVIVGVNKYQLEEE 439
Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQE---KLRKALETQ 482
+ ++ ++ N + E+ AK +LRAE+D + + L KA E +
Sbjct: 440 DEV---EVLKVDNSSVREEQIAK---------LKKLRAERDQEKVEAALDALTKAAEKE 486
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 31.6 bits (73), Expect = 1.7
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 8/66 (12%)
Query: 283 IHEVEKARKRL-----EVEKDELQAALEEAEAALEQEENKVLRAQLE-LSQANAEAQKNI 336
I++ EK K L EK++++AA++E + AL+ E+ + ++A+ E L+QA+ + + +
Sbjct: 536 IYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAM 595
Query: 337 KRYQQQ 342
YQQ
Sbjct: 596 --YQQA 599
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 31.4 bits (72), Expect = 1.8
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQL 384
L QA E +KN + + L+++ L++ ++ QL R+ + + + E QL
Sbjct: 436 LQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQL----RQTSDEEQQQPELDQL 491
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEA 441
EQ+ L D + LN L Q K E EL +L +DE+L E
Sbjct: 492 AEQS-----DVLVRLVDNIQLLNMLETQDW-------KPEQELFSLQDLIDEVLPEV 536
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 31.2 bits (71), Expect = 2.0
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 428 QTLHSDLDELLNEAKNSEEKAK--KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKE 485
Q L L EL E K E + K K +++ + ++L + + K+ + E Q++
Sbjct: 87 QGLQRKLKELEREQKEEEVREKHNKKIIE--KFGEDLEEVYKFMKGEAKVEEEEEKQMEI 144
Query: 486 LQIRLD------EAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER 538
L+ L + EN +L+ KA+QK + + E ++ E R DA KN + E+
Sbjct: 145 LEKALKSYLKIVKEENKSLQRLAKALQKESEERTQDETKMIEEYRDKIDALKNAIEVEK 203
Score = 30.4 bits (69), Expect = 4.3
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 281 RNIHEVEKARKRLEVE-------KDELQAALEEA------EAALEQEENKVLRAQLE-LS 326
R + E+E+ +K EV ++ LEE EA +E+EE K Q+E L
Sbjct: 91 RKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEK----QMEILE 146
Query: 327 QANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN--ALQNELE-ESRQ 383
+A K +K + L+ + AL++E R E I E R AL+N +E E
Sbjct: 147 KALKSYLKIVKEENKSLQRLAKALQKESEERTQ-DETKMIEEYRDKIDALKNAIEVEKEG 205
Query: 384 LLEQA 388
L E+A
Sbjct: 206 LQEEA 210
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 31.4 bits (72), Expect = 2.0
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 283 IHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQ 342
+ ++E++R+RL L A LEE +E + L QL + NI + Q+
Sbjct: 77 VEQLEESRQRL----SRLVAKLEEM-----RERDLELNVQL---------KDNIAQLNQE 118
Query: 343 LKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLL 385
+ + + A E Q A + + + ++ R Q ELE+ LL
Sbjct: 119 IAEREKAEEARQEAFEQLKNE---IKEREET-QIELEQQSSLL 157
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 30.3 bits (69), Expect = 2.0
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ-ANAEAQKNIKRYQQQL 343
+ A+K+LE E +LQA L++ E L++EE K+ + LS+ A Q+ +++ QQ+L
Sbjct: 32 AGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQEL 91
Query: 344 KDVQTALEEE-QRARDDAREQL 364
+ Q A ++E Q+ + + + +
Sbjct: 92 QQKQQAAQQELQQKQQELLQPI 113
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 31.2 bits (71), Expect = 2.1
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEA--ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQ 342
E+E+ + E + E EA E + +A E+ + + E ++ I+ +
Sbjct: 487 EIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVKVSEEEKEKIE---EA 543
Query: 343 LKDVQTALEEEQRARDDAREQLGIV 367
+ D++ ALE E+ E+L V
Sbjct: 544 ITDLEEALEGEKEEIKAKIEELQEV 568
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 31.0 bits (71), Expect = 2.1
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 349 ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNE 408
L+EE+R E+L A +NEL S+++ RG AE +A+ E
Sbjct: 33 ELDEERRKLLRELEEL-------QAERNEL--SKEIGRALKRGEDDAEELIAEV----KE 79
Query: 409 LSAQATSISAAKRKLEGELQTLHSDL 434
L + + AA +LE EL TL +
Sbjct: 80 LKEKLKELEAALDELEAELDTLLLTI 105
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 31.1 bits (71), Expect = 2.2
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
AA +AE LEQE L Q +A AE Q+ K + Q + + RA A
Sbjct: 666 AAARHQAEL-LEQEARGRLERQKMHDKAKAEEQR-TKLLELQAESAAVESSGQSRAEALA 723
Query: 361 REQLGIVERRANALQNELE-ESRQLLEQADRGRRQAETELADAHEQ-LNEL 409
+ ++E A Q EL ++ ++ +A+ + + EL +EQ NEL
Sbjct: 724 EAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELELEYEQAQNEL 774
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 31.2 bits (71), Expect = 2.2
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 379 EESRQLLEQADRGRRQ-AETELADAHEQLNELSAQATSI 416
E RQL +A G RQ A E+A AH LS+QAT+I
Sbjct: 341 EAVRQLRGEA--GERQVAGAEVALAHGNGGVLSSQATAI 377
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 31.4 bits (72), Expect = 2.2
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 6/125 (4%)
Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
E A + E AA AEAA E + + A A + +Q
Sbjct: 93 PAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQP 152
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
E + + E+ ERR + + + + E+ R R + + D
Sbjct: 153 A------TEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRR 206
Query: 404 EQLNE 408
++ +
Sbjct: 207 DRREQ 211
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 31.3 bits (71), Expect = 2.3
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 454 DAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKA 504
DAARLAD +R Q A + L LET+I E + L GG+KA
Sbjct: 748 DAARLADAVRVSQLEADLAQ-LGGGLETEIGEKGVN--------LSGGQKA 789
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 31.0 bits (70), Expect = 2.4
Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 32/224 (14%)
Query: 238 STELFRLKGAYEEAQEQLEAVRRENKNLADE-VKDLLDQIGEGGRNIH--EVEKARKRLE 294
EL LK +EA ++L ++ E ++L E +DL E + + V + +L
Sbjct: 106 EDELAALKIRLQEAAQELRELKSELEDLRSERSRDL--SDEESIKRLQRGAVRSLQDKLL 163
Query: 295 VEKDELQAALEEAEAALEQ------EENKVLRAQLELSQANAEAQKNIKRY--QQQLKDV 346
+ ++ A+ + + + E A K+++ QQL +
Sbjct: 164 LLDAAVKRHDGNVITAVLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKL 223
Query: 347 QTALEEEQRA-------------------RDDAREQLGIVERRANALQNELEESRQLLEQ 387
A E ++ + +E ++ Q ELEE + E
Sbjct: 224 LRAEGESEKQELQQYRQKAHRILQSKEKRINFLKEGCLFEGLDSSTAQIELEELKHESEH 283
Query: 388 ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLH 431
+ E ++ + + A+A+ + + RK EL
Sbjct: 284 VQEEITKLEGQIIQLRSEAQDREAEASGEAESFRKQPRELSQQI 327
>gnl|CDD|236787 PRK10887, glmM, phosphoglucosamine mutase; Provisional.
Length = 443
Score = 30.9 bits (71), Expect = 2.5
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 255 LEAVRRENKNLADEVKD--LLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALE 312
L A+ R +LAD L Q+ N+ K +E + ++AAL E EA L
Sbjct: 346 LAAMVRSGMSLADLCSGMKLFPQVLI---NVRF--KPGADDPLESEAVKAALAEVEAELG 400
Query: 313 QEENKVLRA 321
+LR
Sbjct: 401 GRGRVLLRK 409
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 30.8 bits (70), Expect = 2.5
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 146 LFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKK 205
+ L+AR + +E K+IAL+ +++L +E+E+LQ + + +
Sbjct: 11 PDLVKESLKARGLSVDIDLE----KLIALDDERKKLLSEIEELQAKRN----------EL 56
Query: 206 AKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 265
+K I K G+ K K++++ EL KE EL L A + + +L+ N+
Sbjct: 57 SKQIGKAKGQKKDKIEEIKKELK-ELKE------ELTELSAALKALEAELQDKLLSIPNI 109
Query: 266 ADE 268
E
Sbjct: 110 PHE 112
Score = 30.8 bits (70), Expect = 2.7
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 317 KVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQN 376
K+LR +L + + +A+ + AL++E++ E+L A +N
Sbjct: 5 KLLRNNPDLVKESLKARGLSVDIDL---EKLIALDDERKKLLSEIEEL-------QAKRN 54
Query: 377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
EL S+Q+ + + + + E ++L EL + T +SAA + LE ELQ +
Sbjct: 55 EL--SKQIGKAKGQKKDKIEEIK----KELKELKEELTELSAALKALEAELQDKLLSIPN 108
Query: 437 LLNE 440
+ +E
Sbjct: 109 IPHE 112
>gnl|CDD|221270 pfam11855, DUF3375, Protein of unknown function (DUF3375). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 479 to 499 amino acids in
length.
Length = 471
Score = 30.8 bits (70), Expect = 2.6
Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 21/182 (11%)
Query: 287 EKARKRLEVEKDELQAALEEAEA---ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
E LE E DEL A ++ EA L + R + L A E + +R +
Sbjct: 140 EARLAELEREIDELDAEIDRLEAGDVPLLDDTQVRERFRQILDLAR-ELPADFRRVEDNF 198
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRR-QAETELADA 402
+ + L E D +R + E+ + + +D+GR +A +
Sbjct: 199 RQLDRQLRERIIDWDGSRG----------EVLEEIFDGYDAIADSDQGRSFRAFWDFLLD 248
Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLHSDL-DELLNEAKNSEEKAKKAMVDAARLADE 461
E+ EL ++ A Q L +L + L ++ E ++ RL++
Sbjct: 249 PERQEELDELLRAVLAR-----PPAQGLDPELREFLRRLHRDLLEAGEEVQRTRRRLSES 303
Query: 462 LR 463
LR
Sbjct: 304 LR 305
>gnl|CDD|133398 cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy
Metal Resistance transcription regulators.
Helix-turn-helix (HTH) heavy metal resistance
transcription regulators (HMRTR): MerR1 (mercury), CueR
(copper), CadR (cadmium), PbrR (lead), ZntR (zinc),
and other related proteins. These transcription
regulators mediate responses to heavy metal stress in
eubacteria. They belong to the MerR superfamily of
transcription regulators that promote transcription of
various stress regulons by reconfiguring the operator
sequence located between the -35 and -10 promoter
elements. A typical MerR regulator is comprised of two
distinct domains that harbor the regulatory
(effector-binding) site and the active (DNA-binding)
site. Their N-terminal domains are homologous and
contain a DNA-binding winged HTH motif, while the
C-terminal domains are often dissimilar and bind
specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 123
Score = 29.5 bits (67), Expect = 2.6
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 18/72 (25%)
Query: 369 RRANALQNELEESRQLLEQADRG-------RRQAETELADAHEQLNELSAQATSISAAKR 421
RRA AL L E R+LL D G R E +LA+ ++ EL A
Sbjct: 51 RRAQALGFSLAEIRELLSLRDDGAAPCAEVRALLEEKLAEVEAKIAELQA---------- 100
Query: 422 KLEGELQTLHSD 433
L EL L S
Sbjct: 101 -LRAELAGLLSA 111
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 31.0 bits (70), Expect = 2.7
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 18/193 (9%)
Query: 343 LKDVQTALEEEQRARDDAREQLGIVERRANALQNEL-----EESRQLLEQADRGRRQAET 397
L Q A+ +A DA +R + AL+ EL EE+R+ E+ ++ +
Sbjct: 38 LNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQ 97
Query: 398 ELADAHEQLNE----LSAQATSISAAKRKLEGELQTL---HSDLDELLNEAKNSEEKAKK 450
EL +L E L + ++S+ ++ LE + Q+L +DE + + EE+ K
Sbjct: 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKA 157
Query: 451 AMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQ 510
+ A L+ E A+T+ KL + T+I+E + + + + K A L Q
Sbjct: 158 ELERVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSD------KMAKDLLAQ 211
Query: 511 RVRELENELDGEQ 523
++ L E EQ
Sbjct: 212 AMQRLAGEYVTEQ 224
>gnl|CDD|234796 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.
Length = 135
Score = 29.3 bits (67), Expect = 2.8
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 294 EVEKDELQAALEEAEAALEQEENKV--LRAQLELSQANAEAQ 333
++++ + A E AE ALE + + V RAQ L++A A +
Sbjct: 88 DIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLR 129
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 30.8 bits (70), Expect = 2.8
Identities = 38/153 (24%), Positives = 80/153 (52%), Gaps = 12/153 (7%)
Query: 473 EKLRKALETQIKELQIRLDEAENNAL----KGGKKAIQKL--EQRVRELENELDGEQRRH 526
KL K +E ++ EL I D AL +A+ K+ E+R RE E + E+R
Sbjct: 359 PKLEK-VERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREI 417
Query: 527 ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE----EIA 582
+K ++K E ++ L + E ++ E ++ ++KL+ +++ ++R++ + EI
Sbjct: 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIR 477
Query: 583 ALNLAKFRKAQQELEEAEERADLAEQAVSKIRT 615
A + + ++ELEE ++R + E+ ++++R
Sbjct: 478 AR-DRRIERLEKELEEKKKRVEELERKLAELRK 509
Score = 29.7 bits (67), Expect = 7.7
Identities = 26/117 (22%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 252 QEQLEAVRRENKNLADEVKDLLDQIGEGG--RNIHEVEKARKRLEVEKDELQAALEEAEA 309
E L V+ E + E + ++ + I ++E+ +RLE E EL+ LEE +
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKR 450
Query: 310 ALEQEENKVLRAQLELSQANAEAQKN--IKRYQQQLKDVQTALEEEQRARDDAREQL 364
+E+ E+++ R + E+ + +K+ I+ ++++ ++ LEE+++ ++ +L
Sbjct: 451 EIEKLESELERFRREVRD---KVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504
>gnl|CDD|117576 pfam09010, AsiA, Anti-Sigma Factor A. Anti-sigma factor A is a
transcriptional inhibitor that inhibits sigma
70-directed transcription by weakening its interaction
with the core of the host's RNA polymerase. It is an
all-helical protein, composed of six helical segments
and intervening loops and turns, as well as a
helix-turn-helix DNA binding motif, although neither
free anti-sigma factor nor anti-sigma factor bound to
sigma-70 has been shown to interact directly with DNA.
In solution, the protein forms a symmetric dimer of
small (10.59 kDa) protomers, which are composed of helix
and coil regions and are devoid of beta-strand/sheet
secondary structural elements.
Length = 91
Score = 28.6 bits (64), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 130 LFIPFLNEKSLKHPYPLFFPR---RKLQARL--AEAEETIESLNQ 169
FI FLNE + P F + R++ RL E +E IE NQ
Sbjct: 32 NFISFLNEAGFRTPTGREFTQMSFRQMIKRLTQEEKKELIEEFNQ 76
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 30.5 bits (69), Expect = 2.8
Identities = 44/235 (18%), Positives = 92/235 (39%), Gaps = 25/235 (10%)
Query: 248 YEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
+ +L +++E KN+ +E++ L +QI E I E++K + + E +LQ + E
Sbjct: 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92
Query: 308 EAALEQEENKVLRAQLELSQANAEAQ---------KNIKRYQQQLKDVQTALEEEQRARD 358
+ + E ++L+ + Q N A K+ ++ + ++ +++ +
Sbjct: 93 KENIV-ERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILE 151
Query: 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISA 418
+E +E + AL+++LE + QLN L++Q +A
Sbjct: 152 QQKEDKKSLEEKQAALEDKLE--------------TLVALQNELETQLNSLNSQKAEKNA 197
Query: 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQE 473
L + + + L + +E A +A A A EQ Q
Sbjct: 198 LIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQEAA-AKAAAQEQAALQAAA 251
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 30.6 bits (70), Expect = 2.9
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 479 LETQIKELQIRLDEAENNA--LKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKT 536
LE + + L++ E L+G KA+ K++ + + +D A+K L +
Sbjct: 318 LEVYKRRKEYLLEKLEERLHILEGLLKALNKIDFVIEVIRGSIDL-----KKAKKELIE- 371
Query: 537 ERRIKELSFQAEEDRKNHERMQDL----VDKLQQKIKTYKRQIEEAEEI 581
+ E+ D R++ L ++KL+++I+ +++I E E+I
Sbjct: 372 --ELSEIQADYLLDM----RLRRLTKEEIEKLEKEIEELEKEIAELEKI 414
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 30.4 bits (69), Expect = 3.0
Identities = 24/117 (20%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 383 QLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEA- 441
+LL++A+ + E + D +L + A +++LE +L+ + ++L +A
Sbjct: 17 ELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76
Query: 442 ----KNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
+E+ A++A+ + L D +A + Q E+ + L+ Q+ L+ ++ E
Sbjct: 77 LALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELR 133
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 30.7 bits (70), Expect = 3.0
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 471 TQEKL----RKALETQIKELQIRLDEAENNA-------LKGGKKAIQKLEQRVRELENEL 519
Q +L K LE QIK+L+ +LD+ E N L+ ++ + L++R+ LE L
Sbjct: 161 VQRELLEERLKQLEEQIKKLEEKLDDLELNDTEELQSDLEELEEELSVLKERLEFLEKLL 220
Query: 520 DGEQRRHADAQKN 532
+ +R + ++
Sbjct: 221 EDLERSEESSDRS 233
>gnl|CDD|221298 pfam11896, DUF3416, Domain of unknown function (DUF3416). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and archaea. This domain is
about 190 amino acids in length. This domain is found
associated with pfam00128.
Length = 185
Score = 29.8 bits (68), Expect = 3.1
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 374 LQNELEESRQLLEQA-DRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS 432
+ ELEE LLE+A R LA L A ++ A L
Sbjct: 108 VSLELEEGAALLERAAARADGADRARLAALAAALRAAGDPAERLALA----------LSP 157
Query: 433 DLDELLNEA 441
+L L+
Sbjct: 158 ELAALMARH 166
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 30.6 bits (69), Expect = 3.2
Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 19/164 (11%)
Query: 297 KDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRA 356
+ + AL + E LE+ E K L A +L++A A + KR + QR
Sbjct: 29 RSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLDRFGLGDK-----QRE 83
Query: 357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI 416
R DAR Q+ + ++ R L + + + +A +
Sbjct: 84 RLDARLQID---------RTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAE 134
Query: 417 SAAKRKLEGELQT-----LHSDLDELLNEAKNSEEKAKKAMVDA 455
A E LQ S L + A N A + +A
Sbjct: 135 LHAYYAAEDALQGDWLAGARSGLADYGETATNVASAAAQLATNA 178
>gnl|CDD|227605 COG5280, COG5280, Phage-related minor tail protein [Function
unknown].
Length = 634
Score = 30.6 bits (69), Expect = 3.3
Identities = 49/293 (16%), Positives = 93/293 (31%), Gaps = 39/293 (13%)
Query: 180 RLATEVEDLQLEVDRA--------NAIANAAEKKAKAIDKIIGEWKLKVDDLA---AELD 228
R+ E L E+ A +A A ++ + + + +DDLA A++D
Sbjct: 26 RVKRESNSLGSELKDAGELFKRNISASTEALAQRIQLLTGQVTLTVKNLDDLAKQQAQVD 85
Query: 229 ASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK 288
A G E E+ RE + + L ++ E ++ E K
Sbjct: 86 AQFGS------------GEIGEEAER--LFTREIRVTEGGLTGSLSELNEPTVSVREHGK 131
Query: 289 ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
K E+ AE E +++V A L +A +
Sbjct: 132 GLKDEELRFVTG-GDSSIAEVF-ESIKDRVTAALGILMKAAGLKGGVA------TDVIAG 183
Query: 349 ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNE 408
+ D + L + E + +L + G ++ + L E
Sbjct: 184 GFQAGSAFSGDVDDTLDEYGPQFGKNGKEAK---KLFDTIIDGAQKGADSREKVGDALKE 240
Query: 409 LSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE 461
+ Q S A + E S +++ N ++A A ++A L+ +
Sbjct: 241 FNQQLQDASGAALESLTESALKFS---KIMAADGNEAKRAASAAMEALGLSAD 290
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 30.7 bits (70), Expect = 3.5
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 9 NKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL--------QLEVDRAN 60
L +L L E E+ +E L +K+ A E + E++ +++
Sbjct: 729 ELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVDGADMK 788
Query: 61 AIANAAEKKAKAIDKII----GEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIG 112
+ A+ K + + KVSL + V + A + K + I+G
Sbjct: 789 ELREIADDLKKKLGSAVIVLASVADGKVSLVVAVSKDLTDKVKAGELVKELAAIVG 844
>gnl|CDD|234323 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha
subunit. This family of proteins contains a C-terminal
thiamine diphosphate (TPP) binding domain typical of
flavodoxin/ferredoxin oxidoreductases (pfam01855) as
well as an N-terminal domain similar to the gamma
subunit of the same group of oxidoreductases
(pfam01558). The genes represented by this model are
always found in association with a neighboring gene for
a beta subunit (TIGR02177) which also occurs in a
4-subunit (alpha/beta/gamma/ferredoxin) version of the
system. This alpha/gamma plus beta structure was used to
define the set of sequences to include in this model.
This pair of genes is not consistantly observed in
proximity to any electron acceptor genes, but is found
next to putative ferredoxins or ferredoxin-domain
proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum
USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM
15236, Rhodopseudomonas palustris BisB5, Os,
Sphingomonas wittichii RW1 and Streptomyces
clavuligerus. Other potential acceptors are also
sporadically observed in close proximity including
ferritin-like proteins, reberythrin, peroxiredoxin and a
variety of other flavin and iron-sulfur
cluster-containing proteins. The phylogenetic
distribution of this family encompasses archaea, a
number of deeply-branching bacterial clades and only a
small number of firmicutes and proteobacteria. The
enzyme from Sulfolobus has been characterized with
respect to its substrate specificity which is described
as wide, encompassing various 2-oxoacids such as
2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme
from Hydrogenobacter thermophilus has been shown to have
a high specificity towards 2-oxoglutarate and is one of
the key enzymes in the reverse TCA cycle in this
organism. Furthermore, considering its binding of
coenzyme A, it can be reasonably inferred that the
product of the reaction is succinyl-CoA. The genes for
this enzyme in Prevotella intermedia 17, Persephonella
marina EX-H1 and Picrophilus torridus DSM 9790 are in
close proximity to a variety of TCA cycle genes.
Persephonella marina and P. torridus are believed to
encode complete TCA cycles, and none of these contains
the lipoate-based 2-oxoglutarate dehydrogenase
(E1/E2/E3) system. That system is presumed to be
replaced by this one. In fact, the lipoate system is
absent in most organisms possessing a member of this
family, providing additional circumstantial evidence
that many of these enzymes are capable of acting as
2-oxoglutarate dehydrogenases and.
Length = 562
Score = 30.6 bits (70), Expect = 3.6
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 549 EDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
ED +N +M ++K +K++T ++I E E
Sbjct: 430 EDPENRVKM---MEKRARKLETIAKEIPEPE 457
>gnl|CDD|147874 pfam05957, DUF883, Bacterial protein of unknown function (DUF883).
This family consists of several hypothetical bacterial
proteins of unknown function.
Length = 94
Score = 28.3 bits (64), Expect = 3.9
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
LE +L++L DL+ELL A A A +A E+LR+ E
Sbjct: 1 EDLEDDLRSLLDDLEELLRSA------ADLAGEEA-----------------EELRERAE 37
Query: 481 TQIKELQIRLDEAENNALKGGKKAIQKLEQRVRE 514
+ + + RL +A + A + + A + V E
Sbjct: 38 AALDDARERLGDAADAAAERARDAADAADDYVHE 71
>gnl|CDD|181646 PRK09098, PRK09098, type III secretion system protein HrpB;
Validated.
Length = 233
Score = 29.8 bits (67), Expect = 3.9
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE 362
AL+ A AA+ E + VL A A A A++ + + Q + A+ E R D
Sbjct: 29 ALDAALAAVHAERDAVLAA------ARARAERIVAEARAQAE----AILEAARREADRSA 78
Query: 363 QLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
+ G AL R R+ LA+
Sbjct: 79 RRGYAAGLRQALAEWHARGADHAFAERRAARRMRERLAEI 118
>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta
in mitochondria). This model describes one of the five
types of subunits in the F1 part of F1/F0 ATP synthases.
Members of this family are designated epsilon in
bacterial and chloroplast systems but designated delta
in mitochondria, where the counterpart of the bacterial
delta subunit is designated OSCP. In a few cases
(Propionigenium modestum, Acetobacterium woodii) scoring
above the trusted cutoff and designated here as
exceptions, Na+ replaces H+ for translocation [Energy
metabolism, ATP-proton motive force interconversion].
Length = 130
Score = 28.8 bits (65), Expect = 4.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ 333
++++ E + ALE AE LE E+ A+ L A AQ
Sbjct: 86 DIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQ 125
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 29.9 bits (68), Expect = 4.2
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 229 ASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK 288
SQK+ ++ + L + +++E +R N L V + +I + I ++EK
Sbjct: 40 QSQKKIDKWADQTQELLAEIRQLLKEIENLRVYNDQLQRLVANQQQEIASLQQQIEQIEK 99
Query: 289 ARKRLEVEKDELQAALEE 306
R+ L + LE+
Sbjct: 100 TRQGLVPLMYRMIDGLEQ 117
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in
the lipid bilayer. The MscS proteins are heptamers of
three transmembrane subunits with seven converging M3
domains, and this MscS_porin is towards the N-terminal
of the molecules. The high concentration of negative
charges at the extracellular entrance of the pore helps
select the cations for efflux.
Length = 239
Score = 29.5 bits (67), Expect = 4.6
Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 288 KARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI------KRYQQ 341
+ + + D+ Q +++A L + LR +LE + + +Q
Sbjct: 31 DEIDKSKQKADQYQKQIDDAPKELRE-----LRQELEALKKTDAPVFPELANLSLSQLEQ 85
Query: 342 QLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD 401
+L + L+E Q QL ++ R Q +L E+R+ L++ +
Sbjct: 86 RLAQTLSQLQELQEQLQQENSQLIELQTRPERAQQQLSEARRRLQEIRNRLQALSPGGTP 145
Query: 402 -AHEQLNELSAQATSISAAKRKLEGELQ 428
A Q L A+ ++ A +LE EL
Sbjct: 146 LAQAQRTLLQAELAALKAQIEELELELL 173
>gnl|CDD|110537 pfam01540, Lipoprotein_7, Adhesin lipoprotein. This family
consists of the p50 and variable adherence-associated
antigen (Vaa) adhesins from Mycoplasma hominis. M.
hominis is a mycoplasma associated with human urogenital
diseases, pneumonia, and septic arthritis. An adhesin is
a cell surface molecule that mediates adhesion to other
cells or to the surrounding surface or substrate. The
Vaa antigen is a 50-kDa surface lipoprotein that has
four tandem repetitive DNA sequences encoding a periodic
peptide structure, and is highly immunogenic in the
human host. p50 is also a 50-kDa lipoprotein, having
three repeats A,B and C, that may be a tetramer of
191-kDa in its native environment.
Length = 353
Score = 30.1 bits (67), Expect = 4.6
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 10/154 (6%)
Query: 442 KNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGG 501
KN +EKA A+ A LA+EL+ D+++ E L K + K + E +
Sbjct: 35 KNGKEKADAALKQANALAEELKKNPDYSKILETLNKEIAEATKSFK------EAGSYGDY 88
Query: 502 KKAIQKLEQRVRELENELDGEQRRHADAQKNL----RKTERRIKELSFQAEEDRKNHERM 557
I KL V +NE ++A K L K + I+EL E + + +
Sbjct: 89 PAIISKLSAAVENAKNEKKAIDDKNAQIAKELAERNAKIQSNIEELKKINNEAFELSKTV 148
Query: 558 QDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK 591
+ ++++K K K E+ E A L K R+
Sbjct: 149 NKTIAEVEKKFKIPKDFKEQLENFADDLLDKSRQ 182
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 30.3 bits (69), Expect = 4.7
Identities = 46/259 (17%), Positives = 81/259 (31%), Gaps = 21/259 (8%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTK--QRLATEVEDLQLEVDRANAIANAAEKKAK 207
R K ++LA ++ + L+ R L+ V + A
Sbjct: 294 RIKYASKLAGLANYWKNSIGMLEGLKDLDLLARKQAREAALRAWVKKDPARGAKYGDALD 353
Query: 208 AIDKIIGEWK-LKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 266
+ + E + L E E + + L RL E+ + E +E
Sbjct: 354 ELAALYAERRELARRYFYLEEAFRSGELLSAARTLVRLAKEREKPDAEREPGYQE----- 408
Query: 267 DEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELS 326
++ L Q+ + EV+K L A LEE L + + L
Sbjct: 409 RDLPRLEQQLERIDKPYDA--------EVDKAVLAAMLEEYRELLGADRLPAVDKVLGKE 460
Query: 327 QANAEAQKNIKRYQQ-QLKDVQT--ALEEEQRARDDAREQLGIVERRANALQNELEESRQ 383
+ Y +L D AL E +A +A + I + A AL + L +
Sbjct: 461 SKGDPEAYADRLYAGSKLTDPDGRLALLEGDKAAVEASKDPMI--QLAVALADALRALEK 518
Query: 384 LLEQADRGRRQAETELADA 402
++ + + A A
Sbjct: 519 EEKELEGKLARLRPLYAKA 537
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 30.1 bits (68), Expect = 4.9
Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQ 394
+ ++Q+++++ L + + D + +E L +++S + E + Q
Sbjct: 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQ 131
Query: 395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKA 448
A ++ L + R+LE +L L ++L+ LL
Sbjct: 132 A---FDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTGKSQRSHTV 182
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 29.6 bits (67), Expect = 4.9
Identities = 50/205 (24%), Positives = 75/205 (36%), Gaps = 23/205 (11%)
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE-----QRAR 357
A++ E + E + E Q E ++ + QQ + + T +EE QR
Sbjct: 33 AMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLL 92
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
D+ARE+ + Q L + L R R AE A A + L +L+
Sbjct: 93 DEAREE---ADEIREKWQEALRREQAALSDELRRRTGAEV-FAIARKVLTDLADTDLEER 148
Query: 418 AAKRKLEGELQTLHSDLDELLNEA-KNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLR 476
L+TL D L EA +S R A EL EQ +E++R
Sbjct: 149 MV-DVFVQRLRTLDPDEKAALAEALADSGNPV------LVRSAFELPEEQ-----REQIR 196
Query: 477 KALETQIKELQIRLDEAENNALKGG 501
+ + +IRL L GG
Sbjct: 197 DTIRETLGP-EIRLRFQTEPDLIGG 220
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 29.7 bits (67), Expect = 5.0
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 148 FPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 207
FP R+ + E I S++ + E ++A E E + V A K
Sbjct: 38 FPFREWLLQPDIQNEIIFSMDTFHVRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYL 97
Query: 208 AIDKIIGEWKL-------KVDDLAAELDASQ 231
I K I + ++ AE +A
Sbjct: 98 EIPKPIKDPPELPEGMFPDNLNIFAEQEAQF 128
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 30.0 bits (67), Expect = 5.1
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 440 EAKNSEEKAKKAMVDAARLADEL-RAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL 498
E + ++E A + A + E+ + ++ HA+ EK + + +K+ + RL +A +
Sbjct: 358 EPEVADEFADRVAKKVADMTAEIEKLKKRHARRMEKFNR--TSALKDAEQRLRDAAADPA 415
Query: 499 KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKEL 543
G + I +LE R+ E++ E D R+ K K + ++E+
Sbjct: 416 DTGSE-IWRLEGRL-EIDTE-DDSSRQGPREHKAKYKVDDIVREV 457
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 30.1 bits (68), Expect = 5.3
Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 10/164 (6%)
Query: 282 NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQ 341
I + + + + A ++ + E ++++ + E +K +K
Sbjct: 367 EILVFREQSQLSQSSLSGIFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGW 426
Query: 342 QLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD 401
+ K L E RE+ ++ + L + + + +
Sbjct: 427 KYKSTLQFLRIEIDRLLLLREEE----------LSKKKTKIHKLNKLRHDLSSLLSSIPE 476
Query: 402 AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE 445
E + S+A KL HS + LN + +S
Sbjct: 477 ETSDRVESEKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST 520
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 29.6 bits (67), Expect = 5.3
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 502 KKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLV 561
K I++LE++++EL++ G ++ + ++ + IK+L EE+ K H +
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKE----KKRLKSLIKKL----EEELKKHIEHNEKT 81
Query: 562 DKLQQKIKT 570
K + K+
Sbjct: 82 KKRLSEEKS 90
Score = 29.2 bits (66), Expect = 8.1
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN 532
+K + LE QIKEL ++ + KK ++L+ +++LE EL + H
Sbjct: 30 DKEIERLEKQIKELDS-----SSSGIDKKKKEKKRLKSLIKKLEEELK-KHIEH------ 77
Query: 533 LRKTERRIKELSF 545
KT++R+ E
Sbjct: 78 NEKTKKRLSEEKS 90
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 29.9 bits (67), Expect = 5.4
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
EE Q++ + ++ +N+ L +++ + ++E+ + L+ E LQ L+
Sbjct: 95 EERQKESDQLKLQNQKLVNQLGHARGVFIKTKGRYQKLEELSRHLKEENQCLQIQLD--- 151
Query: 309 AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE-QLGIV 367
AL QE N+ + EL++ AE YQQ+L D A EQ D R+ +G +
Sbjct: 152 -ALVQECNEKIEENQELNRELAETLA----YQQELNDEYQATFVEQHNMLDKRQAYIGKL 206
Query: 368 ERRANALQNELEESRQL 384
E + L E+ QL
Sbjct: 207 EAKVQDLMCEIRNLLQL 223
>gnl|CDD|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional.
Length = 1453
Score = 30.2 bits (68), Expect = 5.4
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 21 LAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
L E E T E + ++ +++ + VE L E R ++ + +I
Sbjct: 1328 LREMETTNERIVHLRAQVDSLRRQQRSLVERLTEEGIRRQEVSEQVAGENNSI 1380
Score = 30.2 bits (68), Expect = 5.4
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 157 LAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
L E E T E + ++ +++ + VE L E R ++ + +I
Sbjct: 1328 LREMETTNERIVHLRAQVDSLRRQQRSLVERLTEEGIRRQEVSEQVAGENNSI 1380
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 30.1 bits (69), Expect = 5.5
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 477 KALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ-KNLRK 535
E +KEL L + + ++ L + ++ELE EL+ + + A A +L
Sbjct: 697 NEQEALLKELAALLKAKPSELPE----RVEALLEELKELEKELEQLKAKLAAAAAGDLLA 752
Query: 536 TERRIKELSFQAEE-DRKNHERMQDLVDKLQQKIK 569
+ + + A + + + + ++ L D L+ K+
Sbjct: 753 QAKEVNGVKVLAAQVEGVDAKALRTLADDLKDKLG 787
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 29.8 bits (68), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 12 KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 58
+ L+ R +E EE I L K+ LE ++L E+E L+ E+++
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47
Score = 29.4 bits (67), Expect = 6.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 194
L+ R +E EE I L K+ LE ++L E+E L+ E+++
Sbjct: 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding proteins,
Other].
Length = 334
Score = 29.8 bits (67), Expect = 5.6
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 29/159 (18%)
Query: 187 DLQLEVDRANAIAN--AAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRL 244
D+ + +D NA AE A+ + + ++ V L A++++ +
Sbjct: 68 DVLVRLDPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKI------------ 115
Query: 245 KGAYEEAQEQLEAVRRE-NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAA 303
E+A+E+L + + + K L+ + E++ ARK L K L AA
Sbjct: 116 --KLEQAREKLLQAELDLRRRVPLFKKGLISR--------EELDHARKALLSAKAALNAA 165
Query: 304 LEEAEAAL-EQEENKVLRAQLELSQANA---EAQKNIKR 338
++E A L+ Q + +A A +KR
Sbjct: 166 IQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKR 204
>gnl|CDD|234437 TIGR03998, thiol_BshC, bacillithiol biosynthesis cysteine-adding
enzyme BshC. Members of this protein family are BshC,
an enzyme required for bacillithiol biosynthesis and
described as a cysteine-adding enzyme. Bacillithiol is a
low-molecular-weight thiol, an analog of glutathione and
mycothiol, and is found largely in the Firmicutes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 528
Score = 29.9 bits (68), Expect = 5.6
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 284 HEVEKARKRLEVEKDELQ--AALEEAEAALEQEENKVLRAQLELSQANAE--AQKNIKRY 339
VE ++R +D A EEA+ + +K LR +L + A+KN+ +
Sbjct: 395 TGVEGLKERFLERQDPEPIDALFEEAKEQIT-AAHKPLREELAAVDPTLQGLAEKNLAKI 453
Query: 340 QQQLKDVQTALEEEQRAR-DDAREQL 364
+Q++ ++ L R + D +Q
Sbjct: 454 TKQVEFLEKRLLRAIRRKHDVELQQF 479
>gnl|CDD|222039 pfam13310, Virulence_RhuM, Virulence protein RhuM family. There
are currently no experimental data for members of this
group or their homologues. However, these proteins are
implicated in virulence/pathogenicity because RhuM is
encoded in the SPI-3 pathogenicity island in Salmonella
typhimurium.
Length = 260
Score = 29.4 bits (67), Expect = 5.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 545 FQAEEDRKNHERMQDLVDKLQQKIKTYKRQI---------EEAEEIAALNLAKFRKAQQE 595
QAE R+ M+D ++L ++ R+I E+A+E A KFR Q
Sbjct: 196 LQAE--RRIPMTMEDWAERLDAFLEFNDREILQDAGKISAEQAKEKAESEYEKFRVIQDR 253
Query: 596 LEEAE 600
L E++
Sbjct: 254 LYESD 258
>gnl|CDD|213358 cd12824, ZntB-like, Salmonella typhimurium Zn2+ transporter
ZntB-like subfamily. A bacterial subfamily belonging to
the Escherichia coli CorA-Salmonella typhimurium
ZntB_like family (EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This subfamily includes the Zn2+ transporter
Salmonella typhimurium ZntB which mediates the efflux of
Zn2+ (and Cd2+). Structures of the intracellular domain
of Vibrio parahaemolyticus and Salmonella typhimurium
ZntB form funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, which occur
in proteins belonging to this subfamily, may be
associated with the transport of different divalent
cations, such as zinc and cadmium. The functional
diversity of MIT transporters may also be due to minor
structural differences regulating gating, substrate
selection, and transport.
Length = 290
Score = 29.4 bits (66), Expect = 5.7
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 16/100 (16%)
Query: 251 AQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAA 310
A ++L R++ +L DLL Q+ + KRLE+ +L L+E E
Sbjct: 88 AVDELRRALRDHSSLKSLA-DLLAQM---------ISGMTKRLELVIFDLTETLDEVEDN 137
Query: 311 LEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
L L Q+ + R ++Q++ Q AL
Sbjct: 138 LLDGGTAPPPYAL------IALQRRLFRIRRQIRPQQQAL 171
>gnl|CDD|214351 CHL00063, atpE, ATP synthase CF1 epsilon subunit.
Length = 134
Score = 28.7 bits (65), Expect = 6.0
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENK--VLRAQLELSQANA--EAQKNIK 337
++ EK +++ E Q LE AEA LE+ E K + A L L +A A EA I
Sbjct: 79 NDAEKGS---DIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAINAIS 133
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 29.8 bits (67), Expect = 6.1
Identities = 46/192 (23%), Positives = 67/192 (34%), Gaps = 45/192 (23%)
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKD 345
V+ + L V K E AA L +E RA E A A A + + L+
Sbjct: 170 VDISHPALFVPKAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRK 229
Query: 346 VQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA--DRGRRQAETELADAH 403
+ E +AR DA EL+ + + L A D + +AE A
Sbjct: 230 L-----ERAKARADA----------------ELKRADKALAAAKTDEAKARAEERQQKAA 268
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
+Q E + Q + AK E ++ A A +AA+ A +
Sbjct: 269 QQAAEAATQ---LDTAKADAE-------------------AKRAAAAATKEAAKAAAAKK 306
Query: 464 AEQDHAQTQEKL 475
AE A T KL
Sbjct: 307 AETAKAATDAKL 318
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 29.8 bits (68), Expect = 6.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 406 LNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465
SA +I+AA R+ E E + LL A S+E A +L + LRA+
Sbjct: 9 FRPQSALRQAITAAYRRDEAEA------VQALLEAATLSDEARAAIRERARKLVEALRAK 62
Query: 466 QDHA 469
+
Sbjct: 63 RKGT 66
>gnl|CDD|233255 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit,
Gram-positive. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation of
chromosome segregation. Not every bacterium has both a
topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason [DNA metabolism, DNA replication,
recombination, and repair].
Length = 738
Score = 29.8 bits (67), Expect = 6.3
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 281 RNIHEVEKARKRLEVEK---------DELQAALEEAEAALEQEENKVLRAQLELSQANAE 331
R+ +E+EKA KRLE+ + DE+ + +E + +EN L + ++ AE
Sbjct: 357 RSKYELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKEN--LIDNFKFTENQAE 414
Query: 332 AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV---ERRANALQNELEE 380
A +++ Y+ D+ EE+ I+ + R L+ +LEE
Sbjct: 415 AIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEE 466
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 29.2 bits (66), Expect = 6.4
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Query: 263 KNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQ 322
+ +V + ++ +VE+ R+ E E+ E E A E E A+
Sbjct: 23 QKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIE--EAEEDAFEIVEAAEEEAK 80
Query: 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEE-QRARDDAREQLGIVERRANALQNELEES 381
EL + EA I++ Q Q++ Q EEE +R ++A+ + G E + LEE
Sbjct: 81 EELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAE-GYEEGYEKGREEGLEEV 139
Query: 382 RQLLEQADRGRRQAETELADAHEQLNELSAQ--ATSISAAKR 421
R+L+EQ + E + E L + ++ AK+
Sbjct: 140 RELIEQL---NKIIEKLIKKREEILESSEEEIVELALDIAKK 178
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 29.9 bits (67), Expect = 6.6
Identities = 57/308 (18%), Positives = 123/308 (39%), Gaps = 18/308 (5%)
Query: 280 GRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL----SQANAEAQKN 335
I E+ + + +E E D L+ + + E L + SQ A
Sbjct: 449 KHIISEISEILEDIEAELDSLERSSNGDDENEEVAMVGSLVEESSAVIERSQELEGAVSR 508
Query: 336 IKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQA 395
I + L+ T ++ + D + + + N+ + + + +A ++
Sbjct: 509 ISEFTSVLEHEVTVCQDLLDGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNF 568
Query: 396 ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDA 455
+ E + + + +LE L++ +LD L++ K+ E++K + +
Sbjct: 569 LGLKSSEKEINSPDEVKGAVCISTLEELE-TLKSEKENLDGELSKCKDDLEESKNKLQET 627
Query: 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVREL 515
+ +EL++E D +Q + ETQ+K + + E A + L++++ L
Sbjct: 628 EKKLEELKSELDASQ---ESNSLAETQLKCMVESYESLELRAKDLEAEHKS-LQEKISSL 683
Query: 516 ENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQI 575
E+EL+ E+ + Q+ + K + + +R E +D+ +QKIK K
Sbjct: 684 EDELEKER---QNHQELIAKCR------ELEEKIERAEQEENMQKLDEEEQKIKQEKEIA 734
Query: 576 EEAEEIAA 583
AE++A
Sbjct: 735 AAAEKLAE 742
>gnl|CDD|237388 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 136
Score = 28.3 bits (63), Expect = 6.7
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 413 ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMV-----DAARLADELRAEQD 467
ATSIS K + + LDE + EA+ A DAA+ ++ A
Sbjct: 73 ATSISVLAEKAIPVEELTGAVLDEFIAEARELASVALPENEPGDVDDAAKTLADMLALGA 132
Query: 468 H 468
H
Sbjct: 133 H 133
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 29.1 bits (66), Expect = 6.7
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 32/127 (25%)
Query: 456 ARLADELRAEQDHAQTQEK------LRKALETQIKELQIRLDEAENNALKGGKKAIQKLE 509
R+ DELR QT + +RKAL+ + + ++ E E L+ + ++LE
Sbjct: 87 LRVRDELRMTIAAYQTLYESSVAFGMRKALQAEQGKSEL---EQEIKKLE---EEKEELE 140
Query: 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
+RV ELE +L+ ++R + ER+I+E +R D + L+++ +
Sbjct: 141 KRVAELEAKLEAIEKRE--------EEERQIEE------------KRHADEIAFLKKQNQ 180
Query: 570 TYKRQIE 576
K Q+E
Sbjct: 181 QLKSQLE 187
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 29.6 bits (66), Expect = 6.8
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 8/182 (4%)
Query: 312 EQEENKVLRAQLELSQ--ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
++E +K++ + E+ +N +K R Q + L+ ++ A + R+ I +
Sbjct: 343 DKEISKMVACKDEVHPKRSNVIHEKTELR---QKRQRAIELKNKKAAMEYQRQLEEIEDN 399
Query: 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
+ N L + +R RR+ TE+ A +++NE +A AT +SA L +
Sbjct: 400 EGARVHNVNSGRPLLAKVNERNRRRNHTEIRLAEQRMNEEAATATPMSAPTSVLTQPSPS 459
Query: 430 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
L + + LN +++ ++KA L+ +L + A TQ ++ I +
Sbjct: 460 LSTSIMPKLNPSESVVVASEKASSP--DLSPKLL-PSEIAVTQTPAVHGIDDIIATVDFG 516
Query: 490 LD 491
+D
Sbjct: 517 ID 518
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 29.7 bits (67), Expect = 6.9
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 492 EAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDR 551
E E N + +I+ E V+ +EL + A +Q N E+ +E A+
Sbjct: 869 EYEGNIGDT-QNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPE 927
Query: 552 KNHERMQDLVDKLQQ 566
+ +R ++ DK +
Sbjct: 928 ELMKRAKEYQDKHKG 942
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 29.4 bits (67), Expect = 7.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 465 EQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGE 522
E++ E+ R+ LE +I EL+ L E + +++LE+ RE ELD E
Sbjct: 166 EEEFEALPEEEREELEEKIDELEEELQEI--------LRQLRELEREAREKLRELDRE 215
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 29.2 bits (66), Expect = 7.2
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 470 QTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
+ + +L+K +I+E + RL+E E N ++ K+ KLE+ ++LE+
Sbjct: 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDL 361
Score = 29.2 bits (66), Expect = 8.5
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 236 NYSTELFRLKGAYEEAQEQL--EAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL 293
NY TE E + EA E + + ++I E + + E+E+ L
Sbjct: 286 NYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFT--EKIREKEKRLEELEQ---NL 340
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQL 323
E+ EL + LEE + LE E ++ + +
Sbjct: 341 IEERKELNSKLEEIQKKLEDLEKRLEKLKS 370
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated.
Length = 367
Score = 29.5 bits (67), Expect = 7.3
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 9 NKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEK 68
KL T +L+ RL + EE +E LA E +D AE
Sbjct: 63 AKLDTLEELRQRLDDLEELLE---------------LAEEEDD--------EETLAEAEA 99
Query: 69 KAKAIDKIIGEWKLKVSLQLEVDRANAI 96
+ KA++K + +L+ L E D NAI
Sbjct: 100 ELKALEKKLAALELERLLSGEYDANNAI 127
>gnl|CDD|173963 cd07979, TAF9, TATA Binding Protein (TBP) Associated Factor 9
(TAF9) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 9 (TAF9) is one of several TAFs that bind TBP and
are involved in forming the TFIID complex. TFIID is one
of seven General Transcription Factors (GTF) (TFIIA,
TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved
in accurate initiation of transcription by RNA
polymerase II in eukaryotes. TFIID plays an important
role in the recognition of promoter DNA and assembly of
the pre-initiation complex. The TFIID complex is
composed of the TBP and at least 13 TAFs. TAFs from
various species were originally named by their predicted
molecular weight or their electrophoretic mobility in
polyacrylamide gels. A new, unified nomenclature for the
pol II TAFs has been suggested to show the relationship
between TAFs orthologs and paralogs. Human TAF9 has a
paralogue gene (TAF9L) which has a redundant function.
Several hypotheses are proposed for TAF function such as
serving as activator-binding sites, in core-promoter
recognition or a role in essential catalytic activity.
It has been shown that TAF9 interacts directly with
different transcription factors such as p53, herpes
simplex virus activator vp16 and the basal transcription
factor TFIIB. Each TAF, with the help of a specific
activator, is required only for expression of subset of
genes and are not universally involved for transcription
as are GTFs. In yeast and human cells, TAFs have been
found as components of other complexes besides TFIID.
TAF9 is a component of TFIID in multiple organisms as
well as different TBP-free TAF complexes containing the
GCN5-type histone acetyltransferase. Several TAFs
interact via histone-fold (HFD) motifs; HFD is the
interaction motif involved in heterodimerization of the
core histones and their assembly into nucleosome
octamers. The minimal HFD contains three alpha-helices
linked by two loops and is found in core histones, TAFS
and many other transcription factors. TFIID has a
histone octamer-like substructure. TFIID has a histone
octamer-like substructure. TAF9 is a shared subunit of
both, histone acetyltransferase complex (SAGA) and TFIID
complexes. TAF9 domain interacts with TAF6 to form a
novel histone-like heterodimer that is structurally
related to the histone H3 and H4 oligomer.
Length = 117
Score = 28.0 bits (63), Expect = 7.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 436 ELLNEAKNSEEKAKKAMVDAA--RLADELRAEQDHAQTQ 472
++L++AK E A KA +DA +LA + R D++ T
Sbjct: 37 DVLDDAKVYSEHAGKANIDADDVKLAIQSRV--DYSFTS 73
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 29.6 bits (67), Expect = 7.6
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 529 AQKNLRKTE--RRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE-IAALN 585
A L + E R +KE AEED+K E + + + ++ ++EA + + A
Sbjct: 494 ASSGLSEEEIERMVKEAEANAEEDKKRKEEI-EARNNADSLAYQAEKTLKEAGDKLPAEE 552
Query: 586 LAKFRKAQQELEEAEERADLAE 607
K KA EL+EA + D+ E
Sbjct: 553 KEKIEKAVAELKEALKGEDVEE 574
>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed.
Length = 140
Score = 28.4 bits (64), Expect = 7.6
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK 334
++++A + L+ K+EL+ ALE+ E AL++ +++ + EL Q EA
Sbjct: 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAAA 140
>gnl|CDD|218852 pfam06008, Laminin_I, Laminin Domain I. coiled-coil structure. It
has been suggested that the domains I and II from
laminin A, B1 and B2 may come together to form a triple
helical coiled-coil structure.
Length = 263
Score = 29.3 bits (66), Expect = 7.7
Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 6/197 (3%)
Query: 217 KLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276
K +++DL L ++ N + + ++ +E K LA+ +K+L D I
Sbjct: 43 KRQLEDLEKALSKLAQDAENLQKKANQALAKAQKVNAAIERTLGHAKTLAEAIKNLRDNI 102
Query: 277 GEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN-AEAQKN 335
E + + + L L L EA+ L + + + QL+ ++A A++
Sbjct: 103 KEILEKLAGLGENAFALPGSA--LSRMLAEAQRMLGEIRERDFQKQLQNAEAELKAAEEL 160
Query: 336 IKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQA 395
+ R Q QT EE + + R+ L E + + L+ L+E++ A+R
Sbjct: 161 LNRVQTWF---QTPQEENEGLFEALRDDLNEYEAKLSDLRELLDEAQAKTRDAERLNLAN 217
Query: 396 ETELADAHEQLNELSAQ 412
+ L + E+ E+S
Sbjct: 218 QKRLREFQEKKQEVSEL 234
>gnl|CDD|233594 TIGR01844, type_I_sec_TolC, type I secretion outer membrane
protein, TolC family. Members of This model are outer
membrane proteins from the TolC subfamily within the RND
(Resistance-Nodulation-cell Division) efflux systems.
These proteins, unlike the NodT subfamily, appear not to
be lipoproteins. All are believed to participate in type
I protein secretion, an ABC transporter system for
protein secretion without cleavage of a signal sequence,
although they may, like TolC, participate also in the
efflux of smaller molecules as well. This family
includes the well-documented examples TolC (E. coli),
PrtF (Erwinia), and AprF (Pseudomonas aeruginosa)
[Protein fate, Protein and peptide secretion and
trafficking, Transport and binding proteins, Porins].
Length = 415
Score = 29.3 bits (66), Expect = 7.8
Identities = 46/163 (28%), Positives = 61/163 (37%), Gaps = 15/163 (9%)
Query: 302 AALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAR 361
A+ AEAA + +L AEA + R Q+ L AL E A +
Sbjct: 88 NAVRAAEAAALAARETLRATAQDLILRTAEAYMEVLRAQEIL-----ALAEANLA--ALK 140
Query: 362 EQLGIVERRANALQN---ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISA 418
EQL + R + ++ ++ A QA+ L DA QL L Q
Sbjct: 141 EQLDLARARFDVGLGTRTDVLQAEARYASARAQLIQAQNNLDDAKAQLRRLVGQPELAPL 200
Query: 419 AKRKLEGELQTLHSDLDELLNEA--KNSEEKAKKAMVDAARLA 459
A EL LD+LL A N A +A VDAAR
Sbjct: 201 AVPSFPAELP---EPLDQLLEIAEASNPLLLAAQAAVDAARYQ 240
>gnl|CDD|147988 pfam06120, Phage_HK97_TLTM, Tail length tape measure protein. This
family consists of the tail length tape measure protein
from bacteriophage HK97 and related sequences from
Escherichia coli O157:H7.
Length = 311
Score = 29.0 bits (64), Expect = 7.8
Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 32/211 (15%)
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE 362
AL+ A+E +E K+ + +S NA+ N L + T++++ D +
Sbjct: 85 ALDAQNRAIEDQEQKIAEIKDAISGYNAKLAANGASEGGWLVNHLTSMDDATEEAADFAD 144
Query: 363 QLGIVERRANALQNELEESRQLLE----QADRGRRQAETELADAHEQLNELSAQATSISA 418
L + E R + + +E +QL+E QA R E+A A + L E++ +
Sbjct: 145 ALAVEEERLEQMLAKRKEIQQLIEDIEDQAIDLIRNKAAEMAGAVQSLLEMNGE------ 198
Query: 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
H++ D LL + + A + D Q + A
Sbjct: 199 ------------HAEFDRLLGLGNKLLAARQGLANIPMKYAGPVIPAADLDNKQ---KDA 243
Query: 479 LETQIKELQIRLDEAENNALKGGKKAIQKLE 509
+E ++L++ + LKG KAI + E
Sbjct: 244 IEKAQRDLEL-------SGLKGEAKAIAQAE 267
>gnl|CDD|219083 pfam06548, Kinesin-related, Kinesin-related. This family
represents a region within kinesin-related proteins from
higher plants. Many family members also contain the
pfam00225 domain. Kinesins are ATP-driven microtubule
motor proteins that produce directed force. Some family
members are associated with the phragmoplast, a
structure composed mainly of microtubules that executes
cytokinesis in higher plants.
Length = 488
Score = 29.5 bits (66), Expect = 8.2
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 13/170 (7%)
Query: 458 LADELRAEQD-HAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELE 516
L +ELR E + + EKL LE++ K+ L +A A++G + I++ + ++E
Sbjct: 296 LTEELRVELEANRSLAEKLEMELESE-KKCTEELKDALQRAMQGHARIIEQYAE-LQEKY 353
Query: 517 NELDGEQRRHADAQKNLRKT----------ERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
N+L + RR + ++++K R L+ + R E+ ++L+ K +
Sbjct: 354 NDLLEKHRRIMEGIEDVKKAAAKAGVKGAGSRFANALAAELSALRAEREKERELLKKENK 413
Query: 567 KIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
++ R EA + A L + R+A++ A+ERA LAEQ K++ +
Sbjct: 414 SLQIQLRDTAEAVQAAGELLVRLREAEEAATLAQERAMLAEQENEKLKKQ 463
>gnl|CDD|216980 pfam02335, Cytochrom_C552, Cytochrome c552. Cytochrome c552
(cytochrome c nitrite reductase) is a crucial enzyme in
the nitrogen cycle catalyzing the reduction of nitrite
to ammonia. The crystal structure of cytochrome c552
reveals it to be a dimer, with with 10 close-packed type
c haem groups.
Length = 383
Score = 29.2 bits (66), Expect = 8.7
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487
+ L ++ + + + +A+ A+V A E +A D T+E++++ALE I+ Q
Sbjct: 282 EWLRDRVEAIQDRVMELQLRAEDALVKAH---FEAKAAWDAGATEEEMKEALE-LIRHAQ 337
Query: 488 IRLD--EAEN 495
R D AEN
Sbjct: 338 WRWDFAIAEN 347
>gnl|CDD|151614 pfam11172, DUF2959, Protein of unknown function (DUF2959). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 201
Score = 28.8 bits (65), Expect = 8.8
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 292 RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALE 351
R+E +D + A E+ ++ALEQ + + + E N QL D E
Sbjct: 29 RVEDARDSQEDAQEQFKSALEQ-----FSSVVNFDGGDLEDVYN------QLND---EYE 74
Query: 352 EEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
+ + A ++ +++ VE A AL +E E+ A RR ++ +L + Q +L
Sbjct: 75 DSEAAAEEVSDRIDAVEDVAEALFDEWEDELDQYSNASL-RRSSQRKLRETRRQYRQL-- 131
Query: 412 QATSISAAKRKLEGELQTLH 431
++ A+ K+E L L
Sbjct: 132 -IRAMKRAEAKMEPVLTALR 150
>gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional.
Length = 184
Score = 28.6 bits (64), Expect = 8.9
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKR 421
G++++RA +++ELEE+R L R +A+T LA + E+ QA I AA +
Sbjct: 53 GGMLDKRAEGIRSELEEARAL-------REEAQTLLASYERKQREVQEQADRIVAAAK 103
>gnl|CDD|218618 pfam05508, Ran-binding, RanGTP-binding protein. The small Ras-like
GTPase Ran plays an essential role in the transport of
macromolecules in and out of the nucleus and has been
implicated in spindle and nuclear envelope formation
during mitosis in higher eukaryotes. The S. cerevisiae
ORF YGL164c encoding a novel RanGTP-binding protein,
termed Yrb30p was identified. The protein competes with
yeast RanBP1 (Yrb1p) for binding to the GTP-bound form
of yeast Ran (Gsp1p) and is, like Yrb1p, able to form
trimeric complexes with RanGTP and some of the
karyopherins.
Length = 302
Score = 28.8 bits (65), Expect = 8.9
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 463 RAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGG-------------KKAIQKLE 509
+ + + EKLRK LET+I + +D E A +G ++ I + +
Sbjct: 38 KIPESDKKELEKLRKKLETKIDIISPAIDLIELAAARGNTSLESTVPLTKSLRREIDEFD 97
Query: 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEED 550
+R+ E + + R + +++++K ER +K+L + EE
Sbjct: 98 ERLDEAASSEELSSRTSENEKESIKKIERYMKDLLARIEEA 138
>gnl|CDD|219951 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68). Proteins in
this family are subunits the FACT complex. The FACT
complex plays a role in transcription initiation and
promotes binding of TATA-binding protein (TBP) to a TATA
box in chromatin.
Length = 152
Score = 28.4 bits (64), Expect = 9.0
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 25/70 (35%)
Query: 540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEA 599
IKEL+F++ K+ + +QD+ + IK ++++ ++ E
Sbjct: 67 IKELTFRS----KDSKHLQDVF----KAIKELQKRV-----------------KKRETER 101
Query: 600 EERADLAEQA 609
+E+AD+ EQ
Sbjct: 102 KEKADVVEQE 111
>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 29.1 bits (65), Expect = 9.1
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 13/146 (8%)
Query: 364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT--------S 415
LG ++ + N E+ + +ADR R QAE + + + S
Sbjct: 151 LGQIKTWNQSAWNARNEANRSRNEADRARNQAE----RFNNESGASATNTKQWRSEADGS 206
Query: 416 ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKL 475
S A R +G ++ S ++ +A++S ++A A A + A A
Sbjct: 207 NSEANR-FKGYADSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASAAHASEVNAANS 265
Query: 476 RKALETQIKELQIRLDEAENNALKGG 501
A T + + D A+ A K G
Sbjct: 266 ATAAATSANRAKQQADRAKTEADKLG 291
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.1 bits (66), Expect = 9.3
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISA 418
+ +E+L +E L+ ELE+ ++LL++ + R + EQL +L +S
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPP--EKREQLEKLLETKEKLSE 388
Query: 419 AKRKLEGELQTLHSDLDELLNEAK 442
+LE EL+ L +L+ L +E K
Sbjct: 389 ELEELEEELKELKEELESLYSEGK 412
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.1 bits (65), Expect = 9.4
Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 17/252 (6%)
Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
++AV + + + + Q + + +K +++ E QAA +E
Sbjct: 45 GGGSVIDAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLK 104
Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
LE+E K Q + AE Q +++ QQ+ + + A E++++A + +
Sbjct: 105 QLEKERLKAQEQQKQ--AEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
Query: 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
A E+++ E+A +A E E AA K + E +
Sbjct: 163 LKAA-----AEAKKKAEEA----AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEA 213
Query: 430 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
+ E K +KA + + A + +A++ A + RKA + ++
Sbjct: 214 ------KAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALDDIFGG 267
Query: 490 LDEAENNALKGG 501
L +N GG
Sbjct: 268 LSSGKNAPKTGG 279
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 29.1 bits (66), Expect = 9.4
Identities = 50/260 (19%), Positives = 111/260 (42%), Gaps = 21/260 (8%)
Query: 333 QKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE---ESRQLLEQAD 389
+K ++ ++Q+ LEE D+A E+ +E R + L + LE ++++ +E+
Sbjct: 251 EKELQDLKEQIDQNLALLEELDL--DEAEEENEEIEERIDTLYDILEKEVKAKKFVEKNI 308
Query: 390 RGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK 449
+ L A EQ +L + + + E EL+T +L++ L E + ++
Sbjct: 309 D---KLTDFLEHAREQNKQLLLELDRLQQSYTLNEDELET-VRELEKQLEELEAQYDQLV 364
Query: 450 KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLE 509
+ + + EL+ E + + Q +I++ Q L E+ K +A +KL+
Sbjct: 365 ERIAEKKVAYSELQEELEEIEKQL-------EEIEKEQEELSESLQGLRKDELEAREKLQ 417
Query: 510 QRVRELENELDGEQRRH-----ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
+ ++L ++ + D + I+ L+ + E N + + +++
Sbjct: 418 EYRQKLHEIKRYLEKSNLPGLPEDYLEYFFVVSDEIEALADELNEVPINMDAVNRQLEEA 477
Query: 565 QQKIKTYKRQIEEAEEIAAL 584
++T K + EE + A L
Sbjct: 478 TDDVETLKEKTEELVDNATL 497
>gnl|CDD|217135 pfam02601, Exonuc_VII_L, Exonuclease VII, large subunit. This
family consist of exonuclease VII, large subunit
EC:3.1.11.6 This enzyme catalyzes exonucleolytic
cleavage in either 5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. This exonuclease VII enzyme
is composed of one large subunit and 4 small ones.
Length = 295
Score = 28.8 bits (65), Expect = 9.4
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 21/136 (15%)
Query: 410 SAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDH- 468
+A A + + +L +L+ L L L L EQD
Sbjct: 135 TAAAELLVPDRTELLQKLEGLEQRLSRALKN--------------------RLEKEQDRL 174
Query: 469 AQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHAD 528
+E+L+ +++ + RL E + + + + + + R+ L + E+ +
Sbjct: 175 NLLRERLKSLSRRLLEQHEERLAELRDRLISSIQNLLSRKQSRLERLILNRELEKNSLLE 234
Query: 529 AQKNLRKTERRIKELS 544
+ ++K LS
Sbjct: 235 NKLATANLTAQLKALS 250
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 29.3 bits (66), Expect = 9.6
Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 29/148 (19%)
Query: 369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQ 428
+R A + E R QA+ + Q +L + +A++ LE + Q
Sbjct: 357 QRQQANDAQTAELRVKT-------EQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQ 409
Query: 429 TLHSDLDE-LLNEAKNSEEKAK---------KAMVDAARLADELRAEQDHAQTQEKLRKA 478
L + D+ ++ E + A + + A + AD A D Q +RKA
Sbjct: 410 DLSRNRDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAV-AVRKA 468
Query: 479 LETQIKELQ-----------IRLDEAEN 495
+ I+ L+ I+LD+A
Sbjct: 469 IAQDIERLKAAPSADLTGLAIKLDDAIA 496
>gnl|CDD|176962 CHL00019, atpF, ATP synthase CF0 B subunit.
Length = 184
Score = 28.3 bits (64), Expect = 9.8
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492
+ +E EA EKA+ + A ADE+R +EK + L Q KE RL+
Sbjct: 66 NSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREK--ENLINQAKEDLERLEN 123
Query: 493 AENNALK-GGKKAIQKLEQRV 512
+N ++ ++AI ++ Q+V
Sbjct: 124 YKNETIRFEQQRAINQVRQQV 144
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory
protein. This family represents an accessory protein
that works with the bacteriocin maturation and ABC
transport secretion protein described by TIGR01193
[Transport and binding proteins, Other].
Length = 457
Score = 28.9 bits (65), Expect = 9.9
Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 327 QANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLE 386
Q + YQ QLK ++ Q L ++++ + LQ + + ++
Sbjct: 205 ANFNPYQSLYENYQAQLKSASDKDQKNQVKST----ILATIQQQIDQLQKSIASYQ--VQ 258
Query: 387 QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEE 446
+A + A + + +L +L Q + K++ E+ L+ L EL ++ K+ +E
Sbjct: 259 KAGLTKSTASNYASSQNSKLAQLKEQQLA------KVKQEITDLNQKLLELESKIKSLKE 312
Query: 447 KAKKAMVDA 455
++K ++ A
Sbjct: 313 DSQKGVIKA 321
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.126 0.321
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,405,364
Number of extensions: 3836344
Number of successful extensions: 17437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11561
Number of HSP's successfully gapped: 2671
Length of query: 721
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 617
Effective length of database: 6,324,786
Effective search space: 3902392962
Effective search space used: 3902392962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.1 bits)