RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4651
(721 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 124 bits (314), Expect = 2e-29
Identities = 70/336 (20%), Positives = 150/336 (44%), Gaps = 12/336 (3%)
Query: 231 QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR 290
++E + EL R K ++A+ +L+ + +++ L +E L +++ E E+ R
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 291 KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
RL +K EL+ L E EA +E+EE + + + Q K+ QQQ+ D++ L
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEE-----------ERSQQLQAEKKKMQQQMLDLEEQL 964
Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
EEE+ AR + + + + +++++ + + R+ E ++D L E
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Query: 411 AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
+A +++ K K E + L L + + E+ +K +++ L +++ Q
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 471 TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ 530
+ E +++ RL++ E + K I++LE + +L+ +L+ E+ A+
Sbjct: 1085 ELKAQLAKKEEELQAALARLED-ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 531 KNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
K R ++ L + E+ Q+L +
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 118 bits (298), Expect = 1e-27
Identities = 66/352 (18%), Positives = 149/352 (42%), Gaps = 19/352 (5%)
Query: 169 QKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELD 228
KV E+ Q E++ + +A A E+K + + + K+
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 229 ASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK 288
+++ + + L+ E + ++E ++ L E K + Q+ + + E E
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 289 ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
AR++L++EK +++ E + E++ N + K K ++++ D+ T
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQ-----------NNKLTKERKLLEERVSDLTT 1018
Query: 349 ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNE 408
L EE+ + + E + L+ L++ + ++ ++ +R+ E E +D HEQ+ E
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Query: 409 LSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDH 468
L AQ + A K E ELQ + L++ ++ N+ +K ++ + L ++L +E+
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138
Query: 469 AQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
EK ++ L +++ L+ L++ ++ + D
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTL--------DTTATQQELRGSDYKDDD 1182
Score = 116 bits (292), Expect = 7e-27
Identities = 65/424 (15%), Positives = 154/424 (36%), Gaps = 58/424 (13%)
Query: 288 KARKRLEVEKDELQAALE-----EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQ 342
ARK + +L++ + + L + ++ ++ ++
Sbjct: 806 LARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEE 865
Query: 343 LKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
L+ + ++ + + ++ + N LQ +L+ +L +A+ R + + +
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 403 HEQLNELSA-------QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDA 455
E L+E+ A ++ + A K+K++ ++ L L+E + + + A
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Query: 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVREL 515
++ D++ +D K RK LE ++ +L L E E K K K E + EL
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE-KAKNLTKLKNKHESMISEL 1044
Query: 516 ENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQI 575
E L E++ + +K RK E +L Q E + ++ + K +++++ ++
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104
Query: 576 EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTF 635
E+ L K R+ + + + +E + + A +K
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA---------------------- 1142
Query: 636 CRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEA 695
E +++ L++++ LE A ++
Sbjct: 1143 -----------------------EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Query: 696 DINE 699
D ++
Sbjct: 1180 DDDD 1183
Score = 107 bits (269), Expect = 4e-24
Identities = 56/301 (18%), Positives = 121/301 (40%), Gaps = 18/301 (5%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
+ LQ +L E + + L KQ L + +++ ++ + + + K +
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
+ + + + ++++ A Q E ++ +++ ++Q + +E K L + V
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
DL + E E+ K L K++ ++ + E E L++EE ++
Sbjct: 1014 SDLTTNL-------AEEEEKAKNLTKLKNKHESMISELEVRLKKEE-----------KSR 1055
Query: 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
E +K ++ + + D+ + E Q + + QL E A LE+ A
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115
Query: 390 RGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK 449
+ R+ E+ ++D E L A KR L EL+ L ++L++ L+ +E
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
Query: 450 K 450
Sbjct: 1176 S 1176
Score = 101 bits (252), Expect = 4e-22
Identities = 51/262 (19%), Positives = 115/262 (43%), Gaps = 10/262 (3%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
+++L+ L E E IE ++ L+ K+++ ++ DL+ +++ A + +
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
D I + + + + + + KE + + L E +E+ + + + +
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
+L ++ + ++ E+EK +++LE E +L + E +A + + + ++ + + EL A
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101
Query: 330 AE----------AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE 379
A A K I+ + + D+Q LE E+ AR+ A +Q + AL+ ELE
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161
Query: 380 ESRQLLEQADRGRRQAETELAD 401
++ R + D
Sbjct: 1162 DTLDTTATQQELRGSDYKDDDD 1183
Score = 88.4 bits (219), Expect = 4e-18
Identities = 52/359 (14%), Positives = 133/359 (37%), Gaps = 37/359 (10%)
Query: 15 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 74
+ L +E + ++ LE+ +L E LQ ++ + AE+ +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 75 KIIGEWKLKVS-LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
E + + ++ ++ + + + K + + + + + +
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ---------------- 963
Query: 134 FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
L E+ R+KLQ A+ I+ + ++ +E +L E + L+ V
Sbjct: 964 -LEEEEAA--------RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Query: 194 RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQE 253
E+KAK + K+ + + + +L L +K + +L+G + E
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074
Query: 254 QLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ 313
Q+ ++ + L ++ +++ + + + + EL++ + + + LE
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Query: 314 EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
E+ A +A+K + ++L+ ++T LE+ +E G + +
Sbjct: 1135 EK-----------AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 73.3 bits (180), Expect = 2e-13
Identities = 41/295 (13%), Positives = 108/295 (36%), Gaps = 53/295 (17%)
Query: 6 DQLNKLKT-KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIAN 64
++ +L+ K+K+Q ++ + EE +E L+ K +++ ++ ++ N
Sbjct: 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 65 AAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFIN 124
K+ K L+ V E+KAK + K+
Sbjct: 1001 KLTKERKL-------------LEERVSDLTTNLAEEEEKAKNLTKL-------------- 1033
Query: 125 TLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATE 184
+ K ++ ++E E ++ + LEK K++L E
Sbjct: 1034 -------------------------KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 185 VEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRL 244
DL ++ A + + ++ + +++D ++ + + K+ R + + L
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 245 KGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDE 299
+ E + ++ ++L++E++ L ++ + ++ R + D+
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 69.9 bits (171), Expect = 2e-12
Identities = 49/306 (16%), Positives = 120/306 (39%), Gaps = 41/306 (13%)
Query: 12 KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 71
K++L+ L E E IE ++ L+ K+++ ++ DL+ +++ A + +
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 72 AIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLF 131
D I + ++ ++ N K+ K +++ + + + +
Sbjct: 980 TADGKIKK------MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE---------- 1023
Query: 132 IPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLE 191
E+ K+ L + K ++ ++E E ++ + LEK K++L E DL +
Sbjct: 1024 -----EEKAKN---LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 192 VDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEA 251
+ A + + ++ + +++D ++ + + K+ R L+ +
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR-------ELESHISDL 1128
Query: 252 QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAAL 311
QE LE+ + + +DL + E+E + LE D E +
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSE----------ELEALKTELEDTLDTTATQQELRGSDY 1178
Query: 312 EQEENK 317
+ +++K
Sbjct: 1179 KDDDDK 1184
Score = 63.3 bits (154), Expect = 2e-10
Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 67/291 (23%)
Query: 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
+ + ELQ + E K E+K + + L ++L+AE + E++R
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 479 LETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER 538
L + Q+LE+ + E+E ++ E+ R Q +K ++
Sbjct: 918 LAAKK----------------------QELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955
Query: 539 RIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEE 598
++ +L Q EE+ +++Q KIK + I E+ + + ++ + +
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Query: 599 AEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEF 658
E+ +
Sbjct: 1016 LTTNLAEEEEKA---------------------------------------------KNL 1030
Query: 659 ENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANK 709
+ H+ + ++ L+ E K + E ++K+KLE + ++L +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Score = 54.5 bits (131), Expect = 1e-07
Identities = 47/251 (18%), Positives = 101/251 (40%), Gaps = 45/251 (17%)
Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
QE+ +A + +++ + R +AE +++LEQ+ +L E + Q + +
Sbjct: 855 QEEEMQAKDEELQRTKERQQKAE--------AELKELEQKHTQLCEEKNLLQEKLQAETE 906
Query: 532 NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK 591
+ E L+ + +E L++ + + +IEE EE + A+ +K
Sbjct: 907 LYAEAEEMRVRLAAKKQE--------------LEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 592 AQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHL 651
QQ++ + EE+ + E A K++ + + K+ +
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLE--------------------KVTADGKIKKMEDDI 992
Query: 652 FLLEE---EFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHAN 708
++E+ + RK + + + +L E + ++K K E+ I+ELE+ L
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 709 KVRVAAISRKK 719
K R K+
Sbjct: 1053 KSRQELEKIKR 1063
Score = 50.2 bits (120), Expect = 2e-06
Identities = 32/212 (15%), Positives = 77/212 (36%), Gaps = 25/212 (11%)
Query: 1 MGEQIDQLNKL-KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA 59
+ DQ NKL K ++ L+ R+++ + +K L K K + + + +L++ + +
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Query: 60 NAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGS 119
EK + ++ L ++ A + + ++ + +
Sbjct: 1052 EKSRQELEKIKRKLE------GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR-- 1103
Query: 120 LDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQ 179
E R+L++ +++ +E +ES EK K+
Sbjct: 1104 ----------------LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147
Query: 180 RLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
L+ E+E L+ E++ ++ + K
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 99.0 bits (247), Expect = 2e-21
Identities = 39/272 (14%), Positives = 90/272 (33%), Gaps = 20/272 (7%)
Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
+ V K + + LQA L + + + + Q + Y + L
Sbjct: 829 YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIII-QKHVRGWLARVHYHRTL 887
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
K + Q A +L+ + +E+ + E ++
Sbjct: 888 KAIV-------------YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQ 934
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
+++E + + S+ LE T L + + SEE+AK A L +E+
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
+ + +K +E + + ++ + K+ L+ EL + +
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL----KEQNTLLKTEKEELNRRIHDQA 1050
Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNHE 555
+ + + +K K+L ++R ++
Sbjct: 1051 KEITETME--KKLVEETKQLELDLNDERLRYQ 1080
Score = 76.3 bits (188), Expect = 2e-14
Identities = 40/254 (15%), Positives = 90/254 (35%), Gaps = 16/254 (6%)
Query: 243 RLKGAYEEAQEQLEA--VRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDEL 300
++ A Q L VR + + + E K ++ Q G R L
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG---WLARVHYHRTLKAIVYL 893
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
Q A E ++ K+ +E +K + ++ +Q ++E+ +
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVE------RYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
E++ +E + +L + L ++ + A + E++ +L + K
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
+ +E + ++L++E K K + R R + E + K L
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR-----RIHDQAKEITETMEKKLV 1062
Query: 481 TQIKELQIRLDEAE 494
+ K+L++ L++
Sbjct: 1063 EETKQLELDLNDER 1076
Score = 68.6 bits (168), Expect = 5e-12
Identities = 34/207 (16%), Positives = 84/207 (40%), Gaps = 7/207 (3%)
Query: 154 QARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKII 213
R A + ++ L+ +R+ + E +L++ +K ++ I
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI--EARSVERYKKLHIGLENKI 930
Query: 214 GEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLL 273
+ + K+D+ E + ++ N E+L E KN + V L
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 274 DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ 333
++I + + +H+ + +K +E D+ + E+ + L+++ + + EL++ +
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050
Query: 334 KNI-----KRYQQQLKDVQTALEEEQR 355
K I K+ ++ K ++ L +E+
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDERL 1077
Score = 67.1 bits (164), Expect = 1e-11
Identities = 35/237 (14%), Positives = 78/237 (32%), Gaps = 8/237 (3%)
Query: 231 QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR 290
Q R Y E ++ R + L + + + A+
Sbjct: 846 QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL--QCCYRRMMAK 903
Query: 291 KRLEVEKDELQA--ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
+ L+ K E ++ ++ LE + ++ R E ++ + + +
Sbjct: 904 RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
Query: 349 ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQL-- 406
L + + E+ R +LQ E+ + R+ L Q ++ E +
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 407 --NELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE 461
+EL Q T + K +L + ++ E + + E K + ++ RL +
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 65.5 bits (160), Expect = 4e-11
Identities = 26/194 (13%), Positives = 75/194 (38%), Gaps = 20/194 (10%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEK----TKQRLATEVEDLQLEVDRANAIANAAEKKA 206
++ +L ++E + I LE ++++ + ++ + +K
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY-----------KSLLEKM 951
Query: 207 KAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 266
++ K+ L S++E +N + + L+ + +++L + E K +
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011
Query: 267 DEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELS 326
+ + + + E+++ L+ EK+EL + + + + K L + +
Sbjct: 1012 EWADKYKHETEQ---LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Query: 327 QANAEAQKNIKRYQ 340
+ + ++ RYQ
Sbjct: 1069 ELDLNDER--LRYQ 1080
Score = 63.2 bits (154), Expect = 2e-10
Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 12/250 (4%)
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
R LQ L E + R + L+
Sbjct: 839 RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898
Query: 481 TQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRI 540
+ + +++ + E +++ KK LE ++ +L+ ++D + + + + + E
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958
Query: 541 KELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQEL---- 596
+ + D + ++ ++ + + +I + + + + ++
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 597 EEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEE 656
E E+ ++ + ++T+ + R ++IT + KLV LE
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQA--------KEITETMEKKLVEETKQLEL 1070
Query: 657 EFENTRKNHQ 666
+ + R +Q
Sbjct: 1071 DLNDERLRYQ 1080
Score = 47.0 bits (112), Expect = 2e-05
Identities = 34/265 (12%), Positives = 85/265 (32%), Gaps = 35/265 (13%)
Query: 445 EEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKA 504
+A + R+ + Q L+ L + + ++ E+ ++ +K
Sbjct: 815 RTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIII-QKH 873
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
++ RV + + ++ +++K + E +K H +++ + +L
Sbjct: 874 VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 565 QQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGS 624
Q+KI ++ + E + ++L ER ++E+ +
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR-------- 985
Query: 625 SPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKA 684
+ L+EE RK + + E K K
Sbjct: 986 --------------------------VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Query: 685 EALRMKKKLEADINELEIALDHANK 709
E ++ +L+ L+ + N+
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044
Score = 46.6 bits (111), Expect = 2e-05
Identities = 30/278 (10%), Positives = 88/278 (31%), Gaps = 46/278 (16%)
Query: 446 EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI 505
++ + L LR + Q LR+ I++ +R A + + K +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK-HVRGWLARVHYHRTLKAIV 891
Query: 506 Q----KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLV 561
+ +L E R +K E +I +L + +E K ++ + + +
Sbjct: 892 YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951
Query: 562 DKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVA 621
+ L+ T ++ E ++ + + A + +E + + + +T+
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE----- 1006
Query: 622 RGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAK 681
++ E ++ + + + L+ +
Sbjct: 1007 ---------------------------------KKTIEEWADKYKHETEQLVSELKEQ-- 1031
Query: 682 GKAEALRMKKKLEADINELEIALDHANKVRVAAISRKK 719
K++L I++ + + ++ +++
Sbjct: 1032 -NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Score = 36.2 bits (84), Expect = 0.040
Identities = 34/204 (16%), Positives = 70/204 (34%), Gaps = 49/204 (24%)
Query: 3 EQIDQLNKLKTK-----RKLQARLAEAEETIESLNQKVIALEKTKQ----RLATEVEDLQ 53
+++ KL +LQ ++ E + +SL +K+ LE T +L ++VE L+
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973
Query: 54 LEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGE 113
+ + A N + I KL+ L I A+K ++++ E
Sbjct: 974 MSEEEAKNATNRVLSLQEEIA------KLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 114 WKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIA 173
K + L+ E I +++
Sbjct: 1028 LKEQ--------------------------------NTLLKTEKEELNRRIHDQAKEI-- 1053
Query: 174 LEKTKQRLATEVEDLQLEVDRANA 197
E +++L E + L+L+++
Sbjct: 1054 TETMEKKLVEETKQLELDLNDERL 1077
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 2e-12
Identities = 92/676 (13%), Positives = 200/676 (29%), Gaps = 170/676 (25%)
Query: 1 MGEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLAT-EVEDLQLEVDRA 59
GE + + K L + +++ + K + + K L+ E++ + + D
Sbjct: 11 TGEH-----QYQYKDILSVFE---DAFVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAV 61
Query: 60 NA----IANAAEKKAKAIDKIIGEWKLKVSLQLEVD-RANAIANAAEKKAKAIDKIIGEW 114
+ K+ + + K + E L++ + I E++ ++ +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSPIKT--EQRQPSMMTRMYI- 113
Query: 115 KLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLN-QKVIA 173
+ + LY N+ + Y + R + +L +A + L K +
Sbjct: 114 ------EQRDRLY--------NDNQVFAKYNV--SRLQPYLKLRQA---LLELRPAKNVL 154
Query: 174 LE----KTKQRLATEV-EDLQLEVDRANAI--ANAAEKKAKAIDKIIGEWKL--KVD-DL 223
++ K +A +V +++ I N + KL ++D +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNW 213
Query: 224 AAELDASQK------ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD----EVKDLL 273
+ D S + L + K YE L V+ N + K LL
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQ--NAKAWNAFNLSCKILL 270
Query: 274 ---DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA------ALEQEENKVLRAQ-- 322
+ + + A + D L E L+ L +
Sbjct: 271 TTRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVL 323
Query: 323 ----LELSQANAEAQKNIKRYQQ----QLKDVQTALE--------EEQRARDDAREQLGI 366
LS + + + + T +E E R ++L +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSV 380
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
A+ LL + +D +N+L S +++ +
Sbjct: 381 FPPSAHI-------PTILLS-----LIWFDVIKSDVMVVVNKLHKY----SLVEKQPKES 424
Query: 427 LQTLHSDLDELLNEAKNSEEKAK-KAMVDAARLA------DELRAEQD---------HAQ 470
++ + L + K E A +++VD + D + D H
Sbjct: 425 TISIP-SIY-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-- 480
Query: 471 TQEKLRKALETQIKEL--QIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHAD 528
L+ + L + LD + LEQ++R +
Sbjct: 481 ----LKNIEHPERMTLFRMVFLD-------------FRFLEQKIRHDSTAWNASGSILNT 523
Query: 529 AQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAK 588
Q L+ + I N + + LV+ + + + + ++ L +A
Sbjct: 524 LQ-QLKFYKPYI----------CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 589 FRKAQQELEEAEERAD 604
+ + EEA ++
Sbjct: 573 MAEDEAIFEEAHKQVQ 588
Score = 68.3 bits (166), Expect = 6e-12
Identities = 92/657 (14%), Positives = 191/657 (29%), Gaps = 181/657 (27%)
Query: 103 KAKAIDKIIGEWKLKGSLDFINTLYCLLFIP------FLNEKSLKHPYPLFFPRRKLQAR 156
+ ID II + + LL F+ E L+ Y L +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEE-VLRINYKF------LMSP 97
Query: 157 LAEAEETIESLNQKVIALEKTKQRLATEVEDL-QLEVDRA---NAIANAAEKKAKAIDKI 212
+ E+ S+ ++ + + RL + + + V R + A + + +
Sbjct: 98 IKT-EQRQPSMMTRM--YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNV 153
Query: 213 I-------GEWKLKVDDLAAELDASQKECRNYSTELFRLK-GAYEEAQEQLEAVRRENKN 264
+ G+ +A ++ S K ++F L + LE +++
Sbjct: 154 LIDGVLGSGKT---W--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 265 LADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE 324
+ D IH ++ +RL K L VL
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------------VLL---- 251
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG---IVERR----ANALQNE 377
+VQ A + A + L ++ R + L
Sbjct: 252 --------------------NVQNA--KAWNAFN-----LSCKILLTTRFKQVTDFLSAA 284
Query: 378 LEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL 437
+ L+ E + L + L +L
Sbjct: 285 -TTTHISLDHHSMTLTPDEVK---------SLLLKY----------------LDCRPQDL 318
Query: 438 LNEAKNSEEKAKKAMVDAARLADEL-RAEQ-DHAQTQEKLRKALETQIKELQIRLDEAEN 495
E + + +++ A + D L + H +KL +E+ + L+ AE
Sbjct: 319 PREVLTTNPRR-LSII-AESIRDGLATWDNWKHVNC-DKLTTIIESSLNV----LEPAEY 371
Query: 496 NAL--------KGGK---KAIQKL-----EQRVRELENELDGEQRRHADAQKNLRKTERR 539
+ + + + V + N+L +++ +K +++
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL----HKYSLVEKQPKESTIS 427
Query: 540 IKELSF----QAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAK------- 588
I + + E + H +VD KT+ +++++ L +
Sbjct: 428 IPSIYLELKVKLENEYALHRS---IVDHYNIP-KTF-----DSDDLIPPYLDQYFYSHIG 478
Query: 589 --FRKAQQELEEAEERA---DLA--EQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQ-IT 640
+ + R D EQ KIR + S L + + F + I
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 641 VQIT--SKLVLHL--FLLEEEFENTRKNHQRALDSMQASLEAEAKG-KAEALRMKKK 692
+LV + FL + E + D ++ +L AE + EA + ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKY---TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 67.2 bits (163), Expect = 1e-11
Identities = 70/504 (13%), Positives = 134/504 (26%), Gaps = 172/504 (34%)
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVE--KDELQAAL--EEAEAALEQ--EENKVLR--A 321
KD+L + + + +D ++ L EE + + + LR
Sbjct: 19 KDILS---------VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 322 QLELSQANAEAQKNIKRYQQQLKDV--------QTALEEEQRARDDAREQLGIVERRANA 373
L Q Q+ +++V + ++ EQR +E+R +
Sbjct: 70 TLLSKQEEM--------VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IEQR-DR 118
Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNE----------------LSAQATSIS 417
L N Q+ + + R Q +L A +L ++
Sbjct: 119 LYN----DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 418 AAKRKLEGE------------------LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
+ K++ + LQ L +D + K
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-------LRI 227
Query: 460 DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN----NALKGGKKAIQKLEQRVREL 515
++AE + L + L +N NA K + L R +++
Sbjct: 228 HSIQAELRRLLKSKPYENCL--------LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQV 277
Query: 516 ENELDGEQRRHA---DAQKNLRKTER----------RIKELSFQAEEDRKNH-------- 554
+ L H L E R ++L E +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIA 334
Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQ----ELEEAEERADLAEQAV 610
E ++D + +K +N K + LE AE R +V
Sbjct: 335 ESIRDGLATWDN----WKH----------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 611 ----SKIRTKGGSVARGSSPLKLVC------SVTFCRQITVQITSK-LV----------L 649
+ I P L+ + + ++ LV +
Sbjct: 381 FPPSAHI------------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 650 H--LFLLEEEFENTRKNHQRALDS 671
L+ + EN H+ +D
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDH 452
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 66.1 bits (160), Expect = 3e-11
Identities = 54/346 (15%), Positives = 117/346 (33%), Gaps = 16/346 (4%)
Query: 239 TELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKD 298
T+LF Q +R+ + + + + + + +V D
Sbjct: 358 TDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGD 417
Query: 299 ELQAALEEAEAALEQEE--NKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRA 356
+ ++ ++ ++ V + EL + ++ + + L + + A + + RA
Sbjct: 418 TVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDE-EEATDNDLRA 476
Query: 357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI 416
+ R Q L+ E R +L++A + Q + + + L +
Sbjct: 477 KFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPEL 536
Query: 417 SAA-----------KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465
+AA ++ L++L S+LDE+ E + E K D A+
Sbjct: 537 NAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQ 596
Query: 466 QDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525
+ L+ L ++ E +G K IQ Q +++ + R
Sbjct: 597 DGVINEEALSVTELDRVYGGLTTKVQE-SLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655
Query: 526 HADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
+ KNL EL +E K + + +++ + Q K
Sbjct: 656 E-EVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI 700
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 57.4 bits (139), Expect = 1e-08
Identities = 28/294 (9%), Positives = 74/294 (25%), Gaps = 35/294 (11%)
Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
A +E+ + L ++ S A + ++ + ++
Sbjct: 751 LARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLE-------------------S 791
Query: 368 ERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGEL 427
+++++ Q A + ++ E E + K E +
Sbjct: 792 RDFGDSIES-----VQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFV 846
Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487
+E+ + E+ ++ + Q ++ K LE
Sbjct: 847 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS 906
Query: 488 IRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQA 547
+ L E A+Q + + + E + + ++ +
Sbjct: 907 VYLGSNETGDS---ITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY----- 958
Query: 548 EEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601
E + Q+ K E + L + +K +
Sbjct: 959 ---NGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 50.8 bits (122), Expect = 1e-06
Identities = 27/192 (14%), Positives = 51/192 (26%), Gaps = 12/192 (6%)
Query: 240 ELFRLKGAYEEAQEQLEAVRREN-----KNLADEVKDLLDQIGEGGRNIHEVEKARKRLE 294
E+ L+ Y Q +L ++RE +E+ + + + E + + +
Sbjct: 822 EVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ 881
Query: 295 VEKDELQAALEEAEAALEQEEN--KVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
+ L LE V E + Q +K + + Q+ E
Sbjct: 882 KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQS--LE 939
Query: 353 EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ 412
Q D + E N + E Q G ++ L +
Sbjct: 940 GQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTG---VKSSAETYKNTLLAELER 996
Query: 413 ATSISAAKRKLE 424
I
Sbjct: 997 LQKIEDLHHHHH 1008
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 9/171 (5%)
Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
K + +A A T ++ ALEK +Q A + + + + K ++
Sbjct: 840 IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLE 899
Query: 211 KIIGEWKLK--VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE-NKNLAD 267
+ ++ + A Q + +N + ++ L ++ + + +
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Query: 268 EVKDLLDQIGEGGRNIH-----EVEKARKRLEVEKDELQAALEEAEAALEQ 313
V +L ++ E + L E + LQ +E+
Sbjct: 960 GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK-IEDLHHHHHH 1009
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 2e-08
Identities = 54/379 (14%), Positives = 110/379 (29%), Gaps = 122/379 (32%)
Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAAR----LADELRAEQDHAQTQEKLRKALETQ 482
+ L + A + E +V + ++ + Q + L L
Sbjct: 38 NKILPEPTEGF---AADDEPTTPAELV--GKFLGYVSSLVE-PSKVGQFDQVLNLCL--- 88
Query: 483 IKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN----LRKTER 538
E EN L+G I L +L E D + + KN +R
Sbjct: 89 --------TEFENCYLEG--NDIHAL---AAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 539 RIKELS----FQAEEDRK-----------NHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583
+ S F+A + N + D ++L+ +TY + + + +A
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---DYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 584 LNLAKFRKAQQE--------------LEEAEERAD---LAEQAVSKIRTKGGSVARGSSP 626
L++ + + LE D L + S P
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-------------SCP 239
Query: 627 L----KLVCSVTFCRQI-------------TVQITSKLVLHLFLLE----EEF-ENTRK- 663
L +L V + + + LV + + E E F + RK
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 664 ----------NHQRA-LDSMQASL--EAEAKGKAEALRM-------KKKLEADINELEIA 703
++ S+ S+ ++ + M +++++ +N+
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 704 LDHANKVRVAAI-SRKKYV 721
L +V ++ + K V
Sbjct: 360 LPAGKQVEISLVNGAKNLV 378
Score = 51.2 bits (122), Expect = 1e-06
Identities = 66/504 (13%), Positives = 127/504 (25%), Gaps = 201/504 (39%)
Query: 297 KDELQAALEEAEAALEQEENKVLRAQLELSQ------ANAEAQKNIKRYQQQLK------ 344
+++ L E ++ EL ++ + ++ Q L
Sbjct: 34 QEQFNKILPEPTEGFAADDE--PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 345 --------DVQT---ALEEEQRARDDAREQLGIVER---RANALQNELEESRQ---LLEQ 387
D+ L +E ++L I + A + + + L
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKEL-I--KNYITARIMAKRPFDKKSNSALFRA 148
Query: 388 ADRGRR--------Q--AET---ELAD---------------AHEQLNELSAQATSISAA 419
G Q + EL D + E L+EL
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 420 KRK-------LEGE---------------------LQTLH-------SDLD--ELLNEAK 442
+ LE +Q H EL + K
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL---------------- 486
+ + + +V A +A + E ++ I L
Sbjct: 269 GATGHS-QGLVTAVAIA--------ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 487 --QIRLDEAENN--------ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN---- 532
I D ENN ++ + +++ V + + L ++ + N
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTNSHLPAGKQVEI-SLVNGAKN 376
Query: 533 ---------LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE--- 580
L +++ + D Q +I +R+++ +
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLD--------------QSRIPFSERKLKFSNRFLP 422
Query: 581 IAA-----LNLAKFRKAQQELEEAEER--ADLAEQAVS------KI---RTKGGSVARGS 624
+A+ L L A + DL + VS +I T GS R
Sbjct: 423 VASPFHSHL-----------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 625 SPLKLVCSVTFCRQITVQITSKLV 648
S S++ +I I V
Sbjct: 472 SG-----SIS--ERIVDCIIRLPV 488
Score = 45.0 bits (106), Expect = 8e-05
Identities = 54/322 (16%), Positives = 89/322 (27%), Gaps = 128/322 (39%)
Query: 230 SQ-----KECRNYSTELFRLKGAYEEAQEQLEAVRRENK--NLADEVKDLLDQI-----G 277
SQ + S + + + A ++ ++ D V + + G
Sbjct: 1626 SQEQGMGMDLYKTS-KAAQ--DVWNRADNHF----KDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 278 EGGRNIHE----------------VEKARKRL---------EVEKDEL------QAALEE 306
E G+ I E EK K + EK L Q AL
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 307 AE-AALEQEENKVLRAQLELSQANA--------EAQKNIKRYQQQLKDVQTALEEEQRAR 357
E AA E L+++ L A+A E Y AL +
Sbjct: 1739 MEKAAFE-----DLKSK-GLIPADATFAGHSLGE-------Y--------AALA----SL 1773
Query: 358 ------DDAREQLGIVERRANALQNELEESRQLLEQ----ADRGRRQAETELADAHEQLN 407
+ + +V R +Q + A R A + +A + +
Sbjct: 1774 ADVMSIESL---VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 408 ELSAQATSISAAKRKLE--------------GELQTLHSDLDELLNEAKNSEEKAKKAMV 453
E + T +E G+L+ LD + N K +K +
Sbjct: 1831 ERVGKRTG-----WLVEIVNYNVENQQYVAAGDLR----ALDTVTNVLNFI--KLQK--I 1877
Query: 454 DAARLADELRAEQDHAQTQEKL 475
D L L E + + L
Sbjct: 1878 DIIELQKSLSLE----EVEGHL 1895
Score = 43.1 bits (101), Expect = 4e-04
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 39/126 (30%)
Query: 2 GE-----------QIDQLNKLKTKR-KLQARLAEAEETIESLNQKVIALEKTKQRLATEV 49
GE I+ L ++ R +E S N +IA+ + +
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS-NYGMIAINPGRVAASFSQ 1823
Query: 50 EDLQLEVDRANA-------IAN----------AAEKKA-----KAIDKI----IGEWKLK 83
E LQ V+R I N A + +A ++ I I +L+
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 84 VSLQLE 89
SL LE
Sbjct: 1884 KSLSLE 1889
Score = 34.3 bits (78), Expect = 0.16
Identities = 60/395 (15%), Positives = 109/395 (27%), Gaps = 128/395 (32%)
Query: 3 EQIDQLNKLKTKRKLQARLAEAEET------IESL-----NQKVIALEKTKQRL-----A 46
++ + + L L E E I +L + L KTK+ + A
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 47 TEVEDLQLEVDRANAIANAAEK-KAK--AI---------------------DKIIGEWKL 82
+ + +A+ A + A+ AI ++G+
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 83 KVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKH 142
+ L + +A + + ++ I EW L+ + + Y LL IP S
Sbjct: 190 FSAETLS-ELIRTTLDAEKVFTQGLN--ILEW-LENPSNTPDKDY-LLSIPI----SC-- 238
Query: 143 PYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAA 202
PL +Q LA T + L L + + L A AIA
Sbjct: 239 --PLIG---VIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT----AVAIAET- 286
Query: 203 EKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRREN 262
W + + +K T LF + G E
Sbjct: 287 -----------DSW-------ESFFVSVRK----AITVLFFI-GV--RCYEAYPNTSLPP 321
Query: 263 KNLADEVKDLLDQIGEG---------GRNIHEVEK----ARKRLEVEKD----------- 298
L D +++ EG +V+ L K
Sbjct: 322 SILEDSLEN-----NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 299 -----------ELQAALEEAEAALEQEENKVLRAQ 322
L L +A+A +++++ ++
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Score = 32.3 bits (73), Expect = 0.76
Identities = 42/321 (13%), Positives = 97/321 (30%), Gaps = 103/321 (32%)
Query: 377 ELEES----RQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS 432
+L ++ + + +AD + + SI L T+H
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFK----------DTYGF------SILDIVINNPVNL-TIHF 1676
Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT-------QEKLRKALETQ--- 482
++ +N + +VD +++ E + T + L TQ
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 483 ----------IKELQIRLDEA--------ENNAL--KGG----KKAIQKLEQRVRELENE 518
+K + +A E AL + ++ + R
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR------- 1789
Query: 519 LDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578
G + A + L ++ + ++ + E +Q +V+++ ++
Sbjct: 1790 --GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG-------KRTGWL 1840
Query: 579 EEIAALNLAKFRKAQQ-----ELEEAEERA-DLAEQAVSKIRTKGGSVARGSSPLKLVCS 632
EI N+ QQ +L RA D ++ I+ + + ++
Sbjct: 1841 VEIVNYNVE----NQQYVAAGDL-----RALDTVTNVLNFIKLQK---------IDII-- 1880
Query: 633 VTFCRQITVQITSKLV-LHLF 652
++ ++ + V HLF
Sbjct: 1881 -----ELQKSLSLEEVEGHLF 1896
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 55.7 bits (133), Expect = 3e-08
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
+ Q R+ +L+N L Q+ + D+ ++ A + +
Sbjct: 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANN---RDNTYNRVSE 113
Query: 563 KLQQKIKTYKRQI-EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVA 621
L+ +I+ KR++ E+ + I L R +++ E D+ KIR+ GS +
Sbjct: 114 DLRSRIEVLKRKVIEKVQHIQLLQ-KNVRAQLVDMKRLEVDIDI------KIRSCRGSCS 166
Query: 622 RGSS 625
R +
Sbjct: 167 RALA 170
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 48.4 bits (115), Expect = 1e-05
Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 11/174 (6%)
Query: 31 LNQKVIALEKTKQRLATEVEDL---QLEVDRANAIANAAEK----KAKAIDKIIGEWKLK 83
+N+K LE+ + L ++ L + +V + K + ++ + +
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967
Query: 84 VSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHP 143
Q + A + + +K I K+K D + +
Sbjct: 1968 ---QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQ-LENAA 2023
Query: 144 YPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197
L + ++ A + E++I + ++ L + +++ TE ++ +VDR+ A
Sbjct: 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077
Score = 46.8 bits (111), Expect = 3e-05
Identities = 29/263 (11%), Positives = 83/263 (31%), Gaps = 19/263 (7%)
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
E D Q + + + L + ++ + Q + E
Sbjct: 1822 GSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIR 1881
Query: 519 LDGEQRRHADA--QKNLRKTERRIKELSFQAEEDRKNHERM----------QDLVDKLQQ 566
L Q R + L + + ++ + ++ + + + V LQ
Sbjct: 1882 LLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQV 1941
Query: 567 KIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSP 626
+ R+++ E A L + + QQ E ++ A + + + +
Sbjct: 1942 SLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVR-------NKEIAV 1994
Query: 627 LKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEA 686
K+ + + V L E + + + +++ S+ + A
Sbjct: 1995 QKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054
Query: 687 LRMKKKLEADINELEIALDHANK 709
+R ++++ + ++++ +D +
Sbjct: 2055 IRETEQIKTESSKVKNKVDRSIA 2077
Score = 41.0 bits (96), Expect = 0.002
Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 41/213 (19%)
Query: 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
+ + +K Q L L+ + E++ Q L+Q
Sbjct: 1930 RDTEAQVKDLQVSLAQKNRELDVKN------------------------EQANQKLKQMV 1965
Query: 390 RGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK 449
+ ++ AE + DA E +L + I+ K K +L K
Sbjct: 1966 QDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADL-------------EKAEPTGPL 2012
Query: 450 KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN--NALKGGKKAIQK 507
+ V+ A + + + LE I + +K ++
Sbjct: 2013 REEVEQLENAAN-ELKLKQDEIVATITA-LEKSIATYKEEYATLIRETEQIKTESSKVKN 2070
Query: 508 LEQRVRELENELDGEQRRHADAQKNLRKTERRI 540
R L + L+ E+ R +N +
Sbjct: 2071 KVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103
Score = 39.9 bits (93), Expect = 0.003
Identities = 37/247 (14%), Positives = 88/247 (35%), Gaps = 18/247 (7%)
Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
+Q L+ R + L H+ + E + + R+ T
Sbjct: 1843 IQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLK--RQGRQNY---VTPRHY 1897
Query: 434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493
LD + EK + + L L+ +D + L+ +L + +EL ++ ++A
Sbjct: 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957
Query: 494 EN---------NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELS 544
A + +K ++L+ ++ E+ ++ A +L K E L
Sbjct: 1958 NQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK---VKAYADLEKAE-PTGPLR 2013
Query: 545 FQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
+ E+ ++ D++ I ++ I +E A + + + + E + + + D
Sbjct: 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073
Query: 605 LAEQAVS 611
+ +
Sbjct: 2074 RSIALLD 2080
Score = 31.8 bits (72), Expect = 1.0
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 12 KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 61
+ ++ A + E++I + ++ L + +++ TE ++ +VDR+ A
Sbjct: 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 45.3 bits (107), Expect = 5e-05
Identities = 11/134 (8%), Positives = 39/134 (29%), Gaps = 10/134 (7%)
Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
+ R E++ LL Q + +E ++ +
Sbjct: 24 GIADFFNKYRLTTDGELLEIEGLLQQ----------ATNSTGSIEYLIQHIKTIYPSEKQ 73
Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
L Q ++ + ++ + + I ++ ++ + ++++ +E
Sbjct: 74 TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133
Query: 370 RANALQNELEESRQ 383
+ E ++
Sbjct: 134 HCQEPCKDTAEIQE 147
Score = 33.3 bits (76), Expect = 0.25
Identities = 13/113 (11%), Positives = 37/113 (32%), Gaps = 3/113 (2%)
Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
+ + R +L +E N L++ + +E + + +L+
Sbjct: 27 DFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHI---KTIYPSEKQTLPQSIEQLT 83
Query: 411 AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
++ I + E + + + +L + + K + A+L +
Sbjct: 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQ 136
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 46.0 bits (108), Expect = 5e-05
Identities = 51/465 (10%), Positives = 137/465 (29%), Gaps = 19/465 (4%)
Query: 138 KSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197
+ K+ A E E+ +E + L + +R +E+ E
Sbjct: 226 SGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENTMQAM 285
Query: 198 IANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 257
+ + + L + Q + R + F + +
Sbjct: 286 QQKLEDFRDYRRLHK-PPKVQEKCQLEINFNTLQTKLRLSNRPAFM-----PSEGKMVSD 339
Query: 258 VRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENK 317
+ L K + + R + ++ ++ + ++ + EA L+Q++ +
Sbjct: 340 INNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYE 399
Query: 318 V--LRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQ 375
L L + + + ++ +Q +++ + +E + NA
Sbjct: 400 TATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV-------NARC 452
Query: 376 NELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ-ATSISAAKRKLEGELQTLHSDL 434
++ + L + RR+A E +++L + A + +EG ++ L
Sbjct: 453 QKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTF 512
Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
E A + + E+ + +
Sbjct: 513 IVHTIEEIQGLTTAHEQFKA---TLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYT 569
Query: 495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
+ + + Q V + L E R ++ ++ + + + +
Sbjct: 570 TITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEI 629
Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEA 599
R+ + + + RQ E++ + + Q+++EA
Sbjct: 630 GRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEA 674
Score = 33.0 bits (74), Expect = 0.45
Identities = 17/198 (8%), Positives = 53/198 (26%), Gaps = 1/198 (0%)
Query: 162 ETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVD 221
E I+ L + T E + + + + I + +++
Sbjct: 518 EEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEIN 577
Query: 222 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGG- 280
+ E + E ++Q A + + +I
Sbjct: 578 GKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMH 637
Query: 281 RNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ 340
+ + ++ E + +++ E +Q + ++ + + ++
Sbjct: 638 GTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLL 697
Query: 341 QQLKDVQTALEEEQRARD 358
+ +E + RD
Sbjct: 698 TTIARTINEVENQILTRD 715
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 45.0 bits (107), Expect = 5e-05
Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE-AQKNIKRYQQQLKD---VQTA 349
++ ++ + ++E EA L + LRAQ + ++A + A+ R Q+ + Q
Sbjct: 61 VIDPEQAENQIKEVEATLME-----LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD 115
Query: 350 LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
L+ + Q+G ++ + Q L+ ++ L+
Sbjct: 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYT 154
Score = 32.7 bits (75), Expect = 0.34
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANA-------EAQKNIK 337
++++ L L+A ++AEA L+ R Q L+Q A A +
Sbjct: 70 QIKEVEATLME----LRAQRQQAEAELKLARVTYSRQQ-RLAQTQAVSQQDLDNAATEMA 124
Query: 338 RYQQQLKDVQTALEEEQRARDDAREQLG 365
Q Q+ + ++ Q + D A+ L
Sbjct: 125 VKQAQIGTIDAQIKRNQASLDTAKTNLD 152
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 44.4 bits (104), Expect = 1e-04
Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 5/207 (2%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARK-RLEVEKDELQAALEEA 307
+ + L D+ R ++++ + +E+ + +AA +
Sbjct: 617 TLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHE 676
Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
LEQE L Q L Q+ AE + + + + + +A ++R + +
Sbjct: 677 AQRLEQEARGRLERQKILDQSEAEKAR-KELLELEAMSMAVESTGNAKAEAESRAEAARI 735
Query: 368 ERRANALQNELEESRQLLE---QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE 424
E + LQ +L+ +E + +R ++ E EL A QL ++A ++ + K
Sbjct: 736 EGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKF 795
Query: 425 GELQTLHSDLDELLNEAKNSEEKAKKA 451
E+ E + K
Sbjct: 796 KEMTEALGPGTIRDLAVAGPEMQVKLL 822
Score = 44.4 bits (104), Expect = 1e-04
Identities = 30/200 (15%), Positives = 69/200 (34%), Gaps = 3/200 (1%)
Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492
++ + +++ +++ + ++ + E A+ + + +++ R LE Q Q ++
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701
Query: 493 AENNALKGGKKAIQKLEQRVRELENELDGE-QRRHADAQKNLRKTERRIKELSFQAEEDR 551
A L+ ++ + E E E R + K + + + +AE +R
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761
Query: 552 KNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA-- 609
R +L+ Q + + A A A Q
Sbjct: 762 VKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
Query: 610 VSKIRTKGGSVARGSSPLKL 629
+ + K + GSSP+ L
Sbjct: 822 LQSLGLKSTLITDGSSPINL 841
Score = 43.3 bits (101), Expect = 3e-04
Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 7/184 (3%)
Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE 306
+ E ++ + + LA E+ + ++AR RLE +K Q+ E+
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701
Query: 307 AEAALEQEENKVLRAQ-LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
A L + E + + ++A AE++ R + + +Q L+ + A + E
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL-- 759
Query: 366 IVERRANALQNELEESRQLLE-QADRGRRQAETELADAHEQLNELSAQAT-SISAAKRKL 423
ER + EL +R LE + + ++ A E E L ++ A ++
Sbjct: 760 --ERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEM 817
Query: 424 EGEL 427
+ +L
Sbjct: 818 QVKL 821
Score = 41.0 bits (95), Expect = 0.002
Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 5/172 (2%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARK---RLEVEKDELQAALE 305
Q A + E + L E + L++ + + E EKARK LE +++
Sbjct: 664 ITTNSQEAAAKHEAQRLEQEARGRLER--QKILDQSEAEKARKELLELEAMSMAVESTGN 721
Query: 306 EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
A + E + + + QA +AQ + +L+ V+ E E E
Sbjct: 722 AKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEV 781
Query: 366 IVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
++ ++ + + R A + L L ++T I+
Sbjct: 782 SKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLIT 833
Score = 35.2 bits (80), Expect = 0.083
Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 7/185 (3%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANA-AEKKAKA 208
+ ++ + ++ Q I + Q A + E +LE + + +++A
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699
Query: 209 IDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADE 268
+L+ +A E + K E R++G Q +L+A + A+
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759
Query: 269 VKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQA 328
+ + E +A+ LEV K + A +E + E + +L+ A
Sbjct: 760 ERVKKVREME-----LIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIR-DLAVA 813
Query: 329 NAEAQ 333
E Q
Sbjct: 814 GPEMQ 818
Score = 33.6 bits (76), Expect = 0.25
Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 8/143 (5%)
Query: 173 ALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQK 232
+Q++ + E + + A + ++ K E + + + E Q
Sbjct: 685 RGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQA 744
Query: 233 ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKR 292
+ + + E + +LE V++ + + L+ + + VE + +
Sbjct: 745 K--------LKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFK 796
Query: 293 LEVEKDELQAALEEAEAALEQEE 315
E + A A E +
Sbjct: 797 EMTEALGPGTIRDLAVAGPEMQV 819
Score = 31.3 bits (70), Expect = 1.2
Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 19/241 (7%)
Query: 336 IKRYQQQLKDVQTALEEEQRARDDAREQLGIVE---RRANALQNELEESRQLLEQADRGR 392
I R ++ + AR+Q + ++ +E Q A +
Sbjct: 598 IIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRS 657
Query: 393 RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAM 452
Q E+ ++ A+ +LE + + + +E+ K+ +
Sbjct: 658 VQLAIEITTNSQEAAAKHEAQRLEQEARGRLE----------RQKILDQSEAEKARKELL 707
Query: 453 VDAARLADELRAEQDHAQTQEKLRKAL-----ETQIKELQIRLDEAENNALKGGKKAIQK 507
A A+ + + A +L+ + E A K +++
Sbjct: 708 ELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVRE 767
Query: 508 LEQRVRELENELDGEQRRH-ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
+E + EL+ + + A+ + K + E L+ L
Sbjct: 768 MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGL 827
Query: 567 K 567
K
Sbjct: 828 K 828
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 42.6 bits (99), Expect = 5e-04
Identities = 39/278 (14%), Positives = 91/278 (32%), Gaps = 13/278 (4%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR 357
L+ E A L + Q ++ + +
Sbjct: 36 QWLEKQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQ 95
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADR--GRRQAETELADAHEQLNELSAQATS 415
+D + + + + L+E R++LE A R + + ++ EL ++ +
Sbjct: 96 EDPIQM-------SMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRN 148
Query: 416 ISAAKRKLEGELQTLHSDLDELLNEAKNSE-EKAKKAMVDAARLADELRAEQDHAQTQEK 474
+ +E E+++L DE + K + + + V + E + +
Sbjct: 149 VKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDN 208
Query: 475 LRKALETQIKELQIRLDEAENNALKG---GKKAIQKLEQRVRELENELDGEQRRHADAQK 531
RK + +I EL + +N + K Q+ LD Q +
Sbjct: 209 KRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAE 268
Query: 532 NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
+L++ +++K+L ++ H+ + L +
Sbjct: 269 SLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTF 306
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 41.7 bits (98), Expect = 6e-04
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 17/110 (15%)
Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE-AQKNIKRYQQQLKDVQTALEE 352
E++ L +AAL +AQL + + A N +R + T+L+
Sbjct: 62 EIDSTTQINTLNTRKAALAS-----YQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDT 116
Query: 353 EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
+ A+ L N + E++ ++ ++QA+ AET L
Sbjct: 117 ----LNTAKATL-------NNAKAEMDVVQENIKQAEIEVNTAETNLGYT 155
Score = 33.2 bits (76), Expect = 0.30
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 13/86 (15%)
Query: 293 LEVEKDELQAALEEAEAALEQEENKVLRAQLEL------------SQANAE-AQKNIKRY 339
+ +AAL +A L + A S A+ +
Sbjct: 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNA 127
Query: 340 QQQLKDVQTALEEEQRARDDAREQLG 365
+ ++ VQ +++ + + A LG
Sbjct: 128 KAEMDVVQENIKQAEIEVNTAETNLG 153
Score = 29.4 bits (66), Expect = 4.5
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 217 KLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276
++ L+ + +Y +L K AY+ A + + + L
Sbjct: 62 EIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSK------------LYGQ 109
Query: 277 GEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
+ + A+ L +A ++ + ++Q E +V A+ L
Sbjct: 110 KATSLD--TLNTAKATLNN----AKAEMDVVQENIKQAEIEVNTAETNLGYTK 156
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 41.5 bits (97), Expect = 0.001
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487
+ + + L EL +E +N + K + EL + + E Q L
Sbjct: 93 RGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILN 152
Query: 488 IRLD------EAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER 538
+ E+ ++ A+QK E + E R DA KN + ER
Sbjct: 153 KAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVER 209
Score = 36.1 bits (83), Expect = 0.045
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
+ ++ +++ELE+E E R K K + ++E+ + + D L
Sbjct: 93 RGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILN 152
Query: 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
+ + +Y + + E + + + A Q +E ER V + R K
Sbjct: 153 KAVTSYNKILTEEDL----QMRRLATALQ--KEIGERTHAETVMVKEYRDK 197
Score = 31.5 bits (71), Expect = 1.0
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 143 PYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAA 202
P PL R +QA+L E E+ + ++ +K K++ E+E++ ++
Sbjct: 85 PDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIED 144
Query: 203 EKKAKAIDKIIGEWKLKV----DDLAAELDASQKECRNYSTELFRLKGAYEEAQEQL-EA 257
EK+ ++K + + + + A QKE + + Y + + L A
Sbjct: 145 EKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNA 204
Query: 258 VRRENKNLADE 268
+ E + +E
Sbjct: 205 IEVERDGMQEE 215
Score = 28.4 bits (63), Expect = 9.1
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 223 LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRN 282
+ A+L + E RN L E+ ++LE V A+ + Q +
Sbjct: 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA 154
Query: 283 IHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQ 342
+ K +++ L AL++ E ++ E + I +
Sbjct: 155 VTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMV----------KEYRDKIDALKNA 204
Query: 343 LKDVQTALEEE 353
++ + ++EE
Sbjct: 205 IEVERDGMQEE 215
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.003
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
AD L E E +RK E Q K LQ D A K Q+ ++ ++ +
Sbjct: 77 ADRLTQEP------ESIRKWREEQRKRLQEL-DAAS-------KVMEQEWREKAKK---D 119
Query: 519 LDGEQRRHADAQKNLRKTERRIKELSFQAEED 550
L+ E + Q K RI + +F + D
Sbjct: 120 LE-EWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 30.9 bits (69), Expect = 0.85
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 276 IGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKN 335
I + R E E RK E ++ LQ E A+ E+ +A+ +L + N +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQ---ELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 336 IKRYQQQLKDVQTALEEEQRARDD 359
+++ + + + + D
Sbjct: 131 VEKNKINNRIAD---KAFYQQPDA 151
Score = 30.1 bits (67), Expect = 1.5
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 213 IGEWKLKVDDLAAELDASQKECRNYSTELFR--LKGAYEEAQEQLEAVRRENKNLADE 268
I +W+ + ELDA+ K E + L+ + EQ+E + N+
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 39.9 bits (92), Expect = 0.003
Identities = 34/264 (12%), Positives = 99/264 (37%), Gaps = 9/264 (3%)
Query: 237 YSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVE 296
Y ++ + E+ ++L + R+++ E ++ + + ++ +LE +
Sbjct: 335 YEQQMGQKVQLPTESLQELLDLHRDSE---REAIEVFIRSSFKDVDHLFQKELAAQLEKK 391
Query: 297 KDELQAALEEAEAALEQEENKVLRAQLE--LSQANAEAQKNIKRYQQQLKDVQTALEEEQ 354
+D+ +EA + +V+ + LE + + + Q+L+D++ EE
Sbjct: 392 RDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEP 451
Query: 355 RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT 414
R A E L + ++ + + ++ Q L + ++ + A L
Sbjct: 452 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ- 510
Query: 415 SISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEK 474
++ + + + + + L E ++ + EQ + +K
Sbjct: 511 ---RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 567
Query: 475 LRKALETQIKELQIRLDEAENNAL 498
+ ++ +I++LQ ++ + +
Sbjct: 568 ESRIMKNEIQDLQTKMRRRKACTI 591
Score = 34.2 bits (77), Expect = 0.17
Identities = 35/259 (13%), Positives = 96/259 (37%), Gaps = 8/259 (3%)
Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQL 384
+ +A A ++ + + Q + L + R + ++ I + +E
Sbjct: 328 VQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQ 387
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNS 444
LE+ + E + + K + + + +L + K
Sbjct: 388 LEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY 447
Query: 445 EEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKA 504
E+ +K + L L++++ + + L + KE+++ +AE+ + +
Sbjct: 448 YEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESA-----QAS 502
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH---ERMQDLV 561
+ L + R+ E ++ ++R + + K L + + + +E E+ Q L
Sbjct: 503 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK 562
Query: 562 DKLQQKIKTYKRQIEEAEE 580
+ Q++ + K +I++ +
Sbjct: 563 EGFQKESRIMKNEIQDLQT 581
Score = 29.9 bits (66), Expect = 3.2
Identities = 43/265 (16%), Positives = 98/265 (36%), Gaps = 4/265 (1%)
Query: 282 NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQ 341
N V+KA E + + E+ L R +E+ ++ + ++
Sbjct: 324 NSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKE 383
Query: 342 QLKDVQTALEEEQRARDDAREQL--GIVERRANALQNELEESRQLLEQADRGRRQAETEL 399
++ ++ + +A G+++ + L+ E++ R Q +L
Sbjct: 384 LAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDL 443
Query: 400 ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEA-KNSEEKAKKAMVDAARL 458
+ + QA I K + + D+ L E K E + KA A
Sbjct: 444 KKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASA 503
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI-QKLEQRVRELEN 517
++ + Q E+ ++ + +K+L +++ LK ++ + KL+++ + L+
Sbjct: 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 563
Query: 518 ELDGEQRRHADAQKNLRKTERRIKE 542
E R + ++L+ RR K
Sbjct: 564 GFQKESRIMKNEIQDLQTKMRRRKA 588
Score = 29.9 bits (66), Expect = 3.7
Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 2/154 (1%)
Query: 230 SQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKA 289
++ G Y ++L+ ++++ + + + ++ + A
Sbjct: 415 FSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDA 474
Query: 290 RKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTA 349
+ + E + +E E + + ++ + YQ+ LK +
Sbjct: 475 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534
Query: 350 LEEEQRARDDAREQLGIVERRANALQNELEESRQ 383
+E ++ +EQ + + + L+E Q
Sbjct: 535 MENDRVQL--LKEQERTLALKLQEQEQLLKEGFQ 566
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.005
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 666 QRALDSMQASLEAEAKGKAEALRMKKKLE 694
++AL +QASL+ A A AL +K +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 34.2 bits (77), Expect = 0.053
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 12/37 (32%)
Query: 67 EKKA-KAIDKIIGEWKLKVSLQL-EVDRANAIA-NAA 100
EK+A K KL+ SL+L D A A+A A
Sbjct: 18 EKQALK---------KLQASLKLYADDSAPALAIKAT 45
Score = 33.0 bits (74), Expect = 0.13
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIA-ALNLAKFRKAQQE 595
E+ + KLQ +K Y A++ A AL + KA E
Sbjct: 18 EKQA--LKKLQASLKLY------ADDSAPALAI----KATME 47
Score = 29.9 bits (66), Expect = 1.5
Identities = 4/12 (33%), Positives = 10/12 (83%)
Query: 502 KKAIQKLEQRVR 513
K+A++KL+ ++
Sbjct: 19 KQALKKLQASLK 30
Score = 29.5 bits (65), Expect = 2.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 203 EKKAKAIDKIIGEWKLKVDDLAAEL--DAS 230
EK+A + K+ KL DD A L A+
Sbjct: 18 EKQA--LKKLQASLKLYADDSAPALAIKAT 45
Score = 29.5 bits (65), Expect = 2.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 14/37 (37%)
Query: 480 ETQ-IKELQIRL-----DEAENNALKGGKKAIQ-KLE 509
E Q +K+LQ L D A AL AI+ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAP--AL-----AIKATME 47
Score = 29.1 bits (64), Expect = 3.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 3 EQIDQLNKLKTKRKLQA-----RLA-EAEETIE 29
E+ L KL+ KL A LA +A T+E
Sbjct: 18 EK-QALKKLQASLKLYADDSAPALAIKA--TME 47
Score = 28.8 bits (63), Expect = 3.7
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 340 QQQLKDVQTALEEEQRARDDAREQLGI---VE 368
+Q LK +Q +L + DD+ L I +E
Sbjct: 19 KQALKKLQASL---KLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 4.5
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 21/40 (52%)
Query: 137 EK-SLKHPYPLFFPRRKLQARL-------AEA---EETIE 165
EK +LK KLQA L A A + T+E
Sbjct: 18 EKQALK----------KLQASLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 9.5
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 331 EAQKNIKRYQQQLK----DVQTAL 350
E Q +K+ Q LK D AL
Sbjct: 18 EKQA-LKKLQASLKLYADDSAPAL 40
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 37.9 bits (87), Expect = 0.010
Identities = 24/197 (12%), Positives = 68/197 (34%), Gaps = 21/197 (10%)
Query: 220 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG 279
V + L+ ++ R +L + E Q+ + + K+ D +
Sbjct: 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVT 70
Query: 280 GRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRY 339
+ + ++E+ L+ + + + L +A+E + + +L + KR
Sbjct: 71 RQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEEL----------ADWKR- 119
Query: 340 QQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETEL 399
+QQ+ + L +E +L ++RQ +++ + +++ +
Sbjct: 120 RQQIACIGGPPN----------ICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKG 169
Query: 400 ADAHEQLNELSAQATSI 416
+ L + +
Sbjct: 170 DPIVQHRPMLEERIVEL 186
Score = 34.1 bits (77), Expect = 0.20
Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 13/190 (6%)
Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADR 390
E Q+ ++++ Q ++ LE++ + ++ ++ L++ + + L
Sbjct: 13 EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDF---NYKTLKS-QGDMQDLNGNNQS 68
Query: 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL-DELLNEAKNSEEKAK 449
RQ +L + L L SI + L ++ + L DE L + K ++ A
Sbjct: 69 VTRQKMQQL---EQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIA- 124
Query: 450 KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLE 509
L ++ + + + QIK+L+ L + + + LE
Sbjct: 125 ---CIGGPPNICLDRLENWITSLAESQLQTRQQIKKLE-ELQQKVSYKGDPIVQHRPMLE 180
Query: 510 QRVRELENEL 519
+R+ EL L
Sbjct: 181 ERIVELFRNL 190
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 37.8 bits (88), Expect = 0.015
Identities = 36/271 (13%), Positives = 73/271 (26%), Gaps = 19/271 (7%)
Query: 343 LKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
++ Q +EE R +++ + +AL + EE + E A + +
Sbjct: 147 VEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYR 206
Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLHSDL--DELLNEAKNSE--EKAKKAMVDAARL 458
+ + A R L E+L E ++ +V+ L
Sbjct: 207 FPRRVRVEYVKK-ERAGLR-LPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKEL 264
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL--KGGKKAIQKLEQRVRELE 516
E + + L + L + + E + + R ++E
Sbjct: 265 E-EGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVE 323
Query: 517 NELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE 576
E +GE + + R++ + E +V
Sbjct: 324 AEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVA----------AIDP 373
Query: 577 EAEEIAALNLAKFRKAQQELEEAEERADLAE 607
E E IA + + R E
Sbjct: 374 EEEVIAEAEGVVHLHEPASILVVKARVYPFE 404
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 37.1 bits (84), Expect = 0.020
Identities = 15/141 (10%), Positives = 54/141 (38%)
Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
EK++ + + + + A G +KA + ++++E+E
Sbjct: 98 LEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 157
Query: 521 GEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
+ + + + + S E+ +K ++++ + + + Y++ ++E ++
Sbjct: 158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQ 217
Query: 581 IAALNLAKFRKAQQELEEAEE 601
+ + ++ ++ EE
Sbjct: 218 GTPQYMENMEQVFEQCQQFEE 238
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 37.0 bits (86), Expect = 0.022
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
K + V ++ + E R + + ++ +EL + E+ K+
Sbjct: 145 KNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRR 204
Query: 563 KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
++ ++KTYK E +EAE R +
Sbjct: 205 RIHGELKTYKSPGLEVLFQG--------PRGSRYDEAEGRFE 238
Score = 32.4 bits (74), Expect = 0.49
Identities = 13/120 (10%), Positives = 41/120 (34%), Gaps = 8/120 (6%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKI 212
Q + + ++ + E E+L+ ++++ + A + K + I
Sbjct: 150 FQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGE 209
Query: 213 IGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDL 272
+ +K ++ + +G +E + E ++ E K + ++ +
Sbjct: 210 LKTYKSPGLEVLFQGPRGS--------RYDEAEGRFEVINNETEQLKAEEKKILNQFLKI 261
Score = 30.4 bits (69), Expect = 2.4
Identities = 14/139 (10%), Positives = 49/139 (35%), Gaps = 4/139 (2%)
Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
KD + I + +VE ++ A + + +E + ++ + E +
Sbjct: 129 KDYSIFLENENILIKAKNFLVFQGDVE--QIAAQSPVELSRMFEEVSGSIQYKKEYEELK 186
Query: 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
+ +K K + +K+ + + E + ++ R + + + +
Sbjct: 187 EKIEKLSKSATESIKNRR-RIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETE 245
Query: 390 RGRRQAETELADAHEQLNE 408
+ + E ++ + ++ +
Sbjct: 246 Q-LKAEEKKILNQFLKIKK 263
Score = 28.5 bits (64), Expect = 9.8
Identities = 16/154 (10%), Positives = 46/154 (29%), Gaps = 26/154 (16%)
Query: 437 LLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
++ S + + + L ++ Q + + EL +E
Sbjct: 120 KIDGKTVSYKDYSIFLENENILIKA----KNFLVFQGDVEQIAAQSPVELSRMFEEVSG- 174
Query: 497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ---------- 546
+ ++ EL+ +++ + ++ KN R+ +K
Sbjct: 175 --------SIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPR 226
Query: 547 AEEDRKNHERMQDLV---DKLQQKIKTYKRQIEE 577
+ R + + ++L+ + K Q +
Sbjct: 227 GSRYDEAEGRFEVINNETEQLKAEEKKILNQFLK 260
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 36.8 bits (84), Expect = 0.029
Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 4/172 (2%)
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE-EKAKKAMVDAARLADEL 462
++ EL ++ ++ +E E+++L DE + K + + + V + E
Sbjct: 2 DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQ 61
Query: 463 RAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKG---GKKAIQKLEQRVRELENEL 519
+ + RK + +I EL + +N + K Q+ L
Sbjct: 62 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACL 121
Query: 520 DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
D Q ++L++ +++K+L ++ H+ + L + +
Sbjct: 122 DQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSL 173
Score = 33.7 bits (76), Expect = 0.26
Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 15/190 (7%)
Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADR 390
+ QK + + +KD +E E ++ +D +++ + LQN E+ + +
Sbjct: 2 DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDF---KCKTLQNREHETNGVAKSD-- 56
Query: 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD-LDELLNEAKNSEEKAK 449
++Q + L + L + + +L + + +++ L E K ++ A
Sbjct: 57 -QKQEQLLL---KKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSA- 111
Query: 450 KAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLE 509
L Q+ + + + Q+K+L+ L++ K Q L
Sbjct: 112 ---CIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLE-ELEQKYTYEHDPITKNKQVLW 167
Query: 510 QRVRELENEL 519
R L +L
Sbjct: 168 DRTFSLFQQL 177
Score = 28.7 bits (63), Expect = 8.2
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 528 DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLA 587
D QK L R +K+ E + K+ ++DL D+ K KT + + E +A +
Sbjct: 2 DKQKELDSKVRNVKDKVMCIEHEIKS---LEDLQDEYDFKCKTLQNREHETNGVAKSDQK 58
Query: 588 KFRKAQQELEEA--EERADLAEQ 608
+ + +++ +R ++ +
Sbjct: 59 QEQLLLKKMYLMLDNKRKEVVHK 81
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 36.1 bits (84), Expect = 0.042
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL 293
+E++ A++ + L +++KD + E + + E R+ L
Sbjct: 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50
Score = 28.8 bits (65), Expect = 7.6
Identities = 9/55 (16%), Positives = 21/55 (38%)
Query: 376 NELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTL 430
+++ ++ + + ++ D + EL+ +R L ELQ L
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57
Score = 28.4 bits (64), Expect = 9.3
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 426 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKE 485
++ L + L + +EK K + L + L E E +R+ L +++E
Sbjct: 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE-------ETVRRTLHNELQE 56
Query: 486 LQ--IR 489
L+ IR
Sbjct: 57 LRGNIR 62
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 35.2 bits (82), Expect = 0.062
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 27/89 (30%)
Query: 542 ELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAE- 600
E DR+ HER+ + ++ +KI+ K+ I E ELE+AE
Sbjct: 251 EKGRPRTVDREVHERL---IKRIVEKIEKNKKDIFTYETY-------------ELEDAEI 294
Query: 601 --------ERADLAEQAVSKIRTKGGSVA 621
R+ A +AV +R +G
Sbjct: 295 GVVATGIVARS--ALRAVKMLREEGIKAG 321
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 35.3 bits (82), Expect = 0.072
Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 9/107 (8%)
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
+DA L R+ +L + + RQ ++ E+ ++ +
Sbjct: 51 EDAARALD--LRKGELRSKDLPG----IISTWQELRQLREQIRSLEEEKEAVTEA---VR 101
Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
A + L + ++ A+L ++
Sbjct: 102 ALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148
Score = 31.9 bits (73), Expect = 0.88
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKA--K 207
R L R E +I+ + ++L ++ L+ EK+A +
Sbjct: 54 ARALDLR---KGELRSKDLPGIISTWQELRQLREQIRSLE------------EEKEAVTE 98
Query: 208 AIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD 267
A+ ++ + + + R +L L + +EQ N
Sbjct: 99 AVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTH 158
Query: 268 E 268
Sbjct: 159 P 159
Score = 29.9 bits (68), Expect = 3.7
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 31/130 (23%)
Query: 253 EQLEAVRR--ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAA 310
E R + + KDL I + ++L + L+
Sbjct: 48 AYPEDAARALDLRKGELRSKDL--------PGIISTWQELRQLREQIRSLEE-------- 91
Query: 311 LEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERR 370
E+ V ++A N Q Q +L R R+QL ++ +
Sbjct: 92 ---EKEAV-------TEAVRALVVNQDNSQVQQDPQYQSLRARGRE---IRKQLTLLYPK 138
Query: 371 ANALQNELEE 380
L+ +
Sbjct: 139 EAQLEEQFYL 148
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis;
HET: MSE PMP; 1.80A {Coxiella burnetii}
Length = 374
Score = 35.2 bits (82), Expect = 0.073
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 20/90 (22%)
Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRA 321
+ A++++ + G R++ R+ D +QA +
Sbjct: 202 SDEYAEKLRLYRNH-GLINRDVCVEYGINCRM----DTIQAV--------------IANR 242
Query: 322 QLE-LSQANAEAQKNIKRYQQQLKDVQTAL 350
+ L + + Y Q D+ +
Sbjct: 243 LMNQLETITEKRRGIAHLYDQSFVDLSEFI 272
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 35.3 bits (80), Expect = 0.083
Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 10/238 (4%)
Query: 137 EKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN 196
++ + + QA L EA++ I L +++ L+ K+ L +LQ + R
Sbjct: 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397
Query: 197 AIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 256
N + + ++ I + +V + E++ E R E+ + +EA L
Sbjct: 398 ETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457
Query: 257 AVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKD---ELQAALEEAEAALEQ 313
A + E D E +
Sbjct: 458 AATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLH 517
Query: 314 EENKVLRAQLELSQANAEAQKNIKRYQQQLK---DVQTALEE----EQRARDDAREQL 364
+ K L+ L S + K +++ ++ D L E + R D E +
Sbjct: 518 NQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLREIRKGNTKRRVDQFENM 575
Score = 31.4 bits (70), Expect = 1.3
Identities = 27/174 (15%), Positives = 60/174 (34%)
Query: 442 KNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGG 501
K ++ + + + A A++ + E Q + + L+
Sbjct: 316 KQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL 375
Query: 502 KKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLV 561
+ A ++LEQR EL+ + + +K E I+ + ++ E
Sbjct: 376 QAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSET 435
Query: 562 DKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRT 615
+LQ++++ +R+ +EA E + + D A A S+
Sbjct: 436 RRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGG 489
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 34.7 bits (80), Expect = 0.12
Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 14/210 (6%)
Query: 291 KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ-ANAEAQKNIKRYQQQLKDVQTA 349
KRL E + A+ E AL+ E + QL Q A+ Q ++K + L V+ A
Sbjct: 5 KRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVK---EDLDKVEPA 61
Query: 350 LEEEQRARDDAREQLGIVERRA---------NALQNELEESRQLLEQADRGRRQAETELA 400
+ E Q A ++Q +VE R+ AL++ + + R E
Sbjct: 62 VIEAQNAVKSIKKQH-LVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENF 120
Query: 401 DAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLAD 460
+ +I +K + + ++ + A K A ++ A +
Sbjct: 121 IPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLK 180
Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRL 490
+ ++ Q E K + +++ L +++
Sbjct: 181 RVEPLRNELQKLEDDAKDNQQKLEALLLQV 210
Score = 30.8 bits (70), Expect = 1.6
Identities = 31/204 (15%), Positives = 75/204 (36%), Gaps = 20/204 (9%)
Query: 335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEES----RQLLEQADR 390
++KR +Q+ + A+ E+ A D E L V+ + + Q + + ++ L++ +
Sbjct: 3 DLKRLRQEPEVFHRAIREKGVALD--LEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEP 60
Query: 391 GRRQAETELADAHEQ-LNELSAQATSISAAKRKLEG---ELQTLHSDLDEL-LNEAKNSE 445
+A+ + +Q L E+ + A +A K LE L +D ++ + +
Sbjct: 61 AVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENF 120
Query: 446 EKAKKAM----VDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA---- 497
+ A + + ++ + N A
Sbjct: 121 IPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLK 180
Query: 498 -LKGGKKAIQKLEQRVRELENELD 520
++ + +QKLE ++ + +L+
Sbjct: 181 RVEPLRNELQKLEDDAKDNQQKLE 204
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 34.2 bits (79), Expect = 0.13
Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNS 444
+ +AD+ R+ + + + +N S + A K+ E + T +
Sbjct: 39 IIEADKKWRRTQFLTEASKKLINICSKA---VGAKKKAKEADGDTSEIPPQVKEAYENGT 95
Query: 445 EEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL------------DE 492
+ + + +L + D K + LE + +L + + DE
Sbjct: 96 LKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDE 155
Query: 493 AENN 496
N
Sbjct: 156 ETGN 159
Score = 32.3 bits (74), Expect = 0.66
Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
R + R A+ + + +I +K +R E + + N + A K KA
Sbjct: 23 RESQRRRFADPD-----IVDAIIEADKKWRRTQFLTEASKKLI---NICSKAVGAKKKAK 74
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
+ ++ A + + K + + +LK ++ +Q+ + +E + L +E
Sbjct: 75 EADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEER 134
Query: 270 KDLLDQIG 277
L+ +G
Sbjct: 135 DKLMLNVG 142
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars,
antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces
venezuelae} PDB: 2oge_A*
Length = 399
Score = 34.1 bits (79), Expect = 0.14
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 20/86 (23%)
Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRA 321
+ LA+ ++ L + G + HE + RL DE+QAA VLR
Sbjct: 228 DPELAERLRMLRNY-GSRQKYSHETKGTNSRL----DEMQAA--------------VLRI 268
Query: 322 QLE-LSQANAEAQKNIKRYQQQLKDV 346
+L L N Y L +
Sbjct: 269 RLAHLDSWNGRRSALAAEYLSGLAGL 294
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 34.0 bits (79), Expect = 0.15
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
RE+ V+ R EL + + D+ RR+ L + N+LS + I K
Sbjct: 8 REKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKE---IGKLK 64
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
R EG+ D E+ N K +E+ + + ++ +EL+
Sbjct: 65 R--EGK------DTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100
Score = 29.8 bits (68), Expect = 3.6
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
+ +L R E ++ KV+ L+K ++ + +E L+ E ++ + +++ K
Sbjct: 15 KERLATRDKELVSLVD----KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT 70
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTEL 241
+I V +L E+D ++E R EL
Sbjct: 71 TEIQNR----VKELKEEIDRLEEELRKVEEEL 98
Score = 28.2 bits (64), Expect = 9.7
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 455 AARLAD---ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA-------LKGGKKA 504
RLA EL + D +K R+ + +++ L+ +E N LK K
Sbjct: 15 KERLATRDKELVSLVDKVLELDKRRREIIKRLEALR-----SERNKLSKEIGKLKREGKD 69
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRK 535
+++ RV+EL+ E+D + ++ L+
Sbjct: 70 TTEIQNRVKELKEEIDRLEEELRKVEEELKN 100
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.0 bits (77), Expect = 0.18
Identities = 24/134 (17%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL 479
+ KLE + + + E K + + + + +E+R Q + K
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMR------QMFVQRVKEK 353
Query: 480 ETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERR 539
E ++KE + L E + K + +KLE + + L++E++ ++R A+ + +
Sbjct: 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQA 413
Query: 540 IKELSFQAEEDRKN 553
+ + ++++KN
Sbjct: 414 GGSQTLKRDKEKKN 427
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 33.8 bits (78), Expect = 0.19
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
+A + A+A L + + R + L A + +QQ D A + + A + A
Sbjct: 80 EADYQSAQANLASTQEQAQRYK-LLVADQAVS-------KQQYADANAAYLQSKAAVEQA 131
Query: 361 REQLG 365
R L
Sbjct: 132 RINLR 136
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 33.8 bits (77), Expect = 0.23
Identities = 28/209 (13%), Positives = 65/209 (31%), Gaps = 5/209 (2%)
Query: 174 LEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKE 233
++K+K + + E +A + + E ++ EL+
Sbjct: 1 MKKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADP 60
Query: 234 CRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGR-NIHEVEKARKR 292
L +E+ E + + +D V+ L +IG+ + E ++
Sbjct: 61 LDLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHEIGQVPLLTLEEEIDLARK 120
Query: 293 LEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
+E + ++ E E V L ++ K + +++V L+
Sbjct: 121 VEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLKS 180
Query: 353 EQRARDDAREQLGIVERRANALQNELEES 381
+ + R A + L E+
Sbjct: 181 LPKELKRYLH----IAREGEAARQHLIEA 205
Score = 31.1 bits (70), Expect = 1.5
Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 28/236 (11%)
Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
+++ + + + ++ E E E A+ + L E + + L
Sbjct: 1 MKKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADP 60
Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL 486
L +LL E EE+ ++ + +D +R L E +
Sbjct: 61 LDLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHEIGQVPLLTLEEEIDLARK 120
Query: 487 QIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ 546
EA + + + + VR Q+ +K KT +
Sbjct: 121 VEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLKS 180
Query: 547 AEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEER 602
++ K + + + A+Q L EA R
Sbjct: 181 LPKELKRYLHIA----------------------------REGEAARQHLIEANLR 208
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 33.2 bits (76), Expect = 0.23
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL 323
N+ + + +G ++ + L+ +EL E ++ENK L+ L
Sbjct: 2 NIVAKPTSFISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADL--KKENKDLKESL 59
Query: 324 ELSQANAEAQK 334
+++ + +
Sbjct: 60 DITDSIRDYDP 70
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 33.3 bits (76), Expect = 0.30
Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 16/179 (8%)
Query: 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQ 363
E A++ R L L + EA + R + + A Q+A D A E
Sbjct: 39 TTAGEMAVQ-------RG-LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Query: 364 LGIVERRANAL--QNELEESRQLLEQA---DRGRRQAETELADAHEQLNELSAQATSISA 418
GI +AL + E + +A +L + +L + A +
Sbjct: 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150
Query: 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHA-QTQEKLR 476
+ + + + L+E ++ E+ A A +A +R +++ LR
Sbjct: 151 VRAAVAQGVGAVEPFA--FLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPLR 207
Score = 31.7 bits (72), Expect = 1.0
Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 22/113 (19%)
Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARD- 358
+ A L + + A + + + D QR
Sbjct: 1 MTADGPRELLQLRA--------AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL 52
Query: 359 -----DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQL 406
+A +LG V Q E+ LL+QA A E L
Sbjct: 53 HPGHPEAVARLGRVRWT----QQRHAEAAVLLQQA----SDAAPEHPGIALWL 97
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 33.3 bits (75), Expect = 0.31
Identities = 24/195 (12%), Positives = 66/195 (33%), Gaps = 12/195 (6%)
Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADR 390
+ I + ++L+ + E E + +E I + + +Q + + QL Q
Sbjct: 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERM 71
Query: 391 GR-----RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD-LDELLNEAKNS 444
R ++ + + L ++ +K L+ + LD+ L + K
Sbjct: 72 SRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRR 131
Query: 445 EEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKA 504
++ A + L Q + ++ QI+ + + ++
Sbjct: 132 QQLA----GNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIPG--PVEEM 185
Query: 505 IQKLEQRVRELENEL 519
+ ++ + ++ + L
Sbjct: 186 LAEVNATITDIISAL 200
Score = 30.9 bits (69), Expect = 1.5
Identities = 32/203 (15%), Positives = 77/203 (37%), Gaps = 22/203 (10%)
Query: 220 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG 279
+ +++ +E R + + ++ QE +E+ + + L
Sbjct: 10 MSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLG------ 63
Query: 280 GRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRY 339
+ R E LQ E L++E + + ++EL++ + + + +++
Sbjct: 64 ----QLNPQERMSRE---TALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQ 116
Query: 340 QQQLKDVQTALEEEQRARDDAR------EQLGIVERRANALQNELEESRQLLEQADRGRR 393
Q + D + L + +R + A L +++ L + ++RQ + +A+ +
Sbjct: 117 QTIILDDE--LIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQ 174
Query: 394 QAETELADAHEQLNELSAQATSI 416
Q E L E++A T I
Sbjct: 175 QLPIP-GPVEEMLAEVNATITDI 196
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 33.1 bits (75), Expect = 0.42
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
EQ+ S +I+AA R+ E E + LL +A+ + A++A A +LAD+LR
Sbjct: 83 EQILPQSVSRAAITAAYRRPETEA------VSMLLEQARLPQPVAEQAHKLAYQLADKLR 136
Query: 464 AEQDHAQTQEKLRKALE 480
+++ + ++ L+
Sbjct: 137 NQKNASGRAGMVQGLLQ 153
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 32.8 bits (74), Expect = 0.42
Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 18/192 (9%)
Query: 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE-----QRARD 358
L E E E + + Q++ KR L + +
Sbjct: 163 LVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSS 222
Query: 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISA 418
+ + EE L+ Q + +L E +E
Sbjct: 223 SGYQGETDLNDAITEAGKTYEEIASLVA------EQPKKDLHFLMECNHEYKGFLGCFPD 276
Query: 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQ------ 472
+G ++ + + D+L+ +K + + + + + ++ L+AE +H +
Sbjct: 277 IIGTHKGAIEKVK-ESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYN 335
Query: 473 EKLRKALETQIK 484
+R LE Q++
Sbjct: 336 SVIRLYLEQQVQ 347
>1q06_A Transcriptional regulator CUER; MERR family transcriptional
regulator, copper efflux regulator; 2.07A {Escherichia
coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Length = 135
Score = 31.1 bits (71), Expect = 0.44
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
+L ++ R+A + LEES +L+ + +R + E++ E+ +
Sbjct: 41 QQHLNELTLL-RQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQ 99
Query: 418 AAKRKLEGELQTLHSD 433
+ + +L D
Sbjct: 100 SMRDQLLALANACPGD 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 32.6 bits (75), Expect = 0.44
Identities = 5/50 (10%), Positives = 17/50 (34%)
Query: 244 LKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL 293
+ + ++ +R+ + L + ++ + + RK L
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 50
Score = 29.2 bits (66), Expect = 4.8
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 368 ERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGEL 427
AL E+ RQ E+ R Q EL EQL + + + +++L +
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNME-------RKELHNTV 54
Query: 428 QTL 430
L
Sbjct: 55 MDL 57
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 32.6 bits (75), Expect = 0.48
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 385 LEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNS 444
+ + + +L + +++LN + + I + E D +L+ E +
Sbjct: 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKE---IGKRFKAKE--------DAKDLIAEKEKL 83
Query: 445 EEKAKKAMVDAARLADELRA 464
+ K+ + A LR+
Sbjct: 84 SNEKKEIIEKEAEADKNLRS 103
Score = 29.1 bits (66), Expect = 5.7
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 536 TERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQE 595
E + + D N + + +Q++I + E+A+++ +A+ K E
Sbjct: 40 KEWV----KLRFDLDEHNKKL-----NSVQKEIGKRFKAKEDAKDL----IAEKEKLSNE 86
Query: 596 LEEAEERADLAEQAVSKI 613
+E E+ A++ +
Sbjct: 87 KKEIIEKEAEADKNLRSK 104
Score = 28.7 bits (65), Expect = 7.1
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
+ + R E L ++IA K +L ++++ KK ++
Sbjct: 19 KASQKKRGDSVE-----LVDEIIAEYKEWVKLRFDLDEHN--------------KKLNSV 59
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADE 268
K IG+ +D + E S E + EA + L + + N+ E
Sbjct: 60 QKEIGKRFKAKEDAKDLI----AEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHE 114
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 32.5 bits (74), Expect = 0.48
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 548 EEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEER 602
+ +K +++ + V L+Q ++ QI+E E+ +N + QQ+L + +
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 32.4 bits (74), Expect = 0.50
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 339 YQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETE 398
L + + + A AR L R L +++ EQA QA +E
Sbjct: 89 DSADLAQANSDAAKARAAMTMARRNL----DRQRELDKSEIAAKRDFEQAQSDYDQAASE 144
Query: 399 LADAHEQLNELSAQATSISAAKR 421
A +L +L A+ A
Sbjct: 145 SQRADARLAQLGAKGGGTLQAGG 167
Score = 30.8 bits (70), Expect = 1.6
Identities = 10/102 (9%), Positives = 34/102 (33%), Gaps = 18/102 (17%)
Query: 237 YSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVE 296
S +L + +A+ + RR D ++L + + +
Sbjct: 89 DSADLAQANSDAAKARAAMTMARRN----LDRQRELDKS------------EIAAKRDF- 131
Query: 297 KDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKR 338
++ Q+ ++A + ++ + ++ + + +I
Sbjct: 132 -EQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILA 172
Score = 28.9 bits (65), Expect = 5.9
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 286 VEKARKRL--EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
+ K+L EV+ ++ ++ A+ A + RA + + A++N+ R ++
Sbjct: 68 IVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTM------ARRNLDRQRELD 121
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETEL 399
K A +R + A+ + L + + +
Sbjct: 122 KSEIAA----KRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAV 173
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 32.6 bits (73), Expect = 0.53
Identities = 28/258 (10%), Positives = 64/258 (24%), Gaps = 37/258 (14%)
Query: 372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLH 431
E+++Q E A + EQ ++
Sbjct: 188 KDESQRQEKAKQQAEDAWDRLPPNVRKFDVDVEQF-HYLVVLDDYGNVLSVTRTGVRPYV 246
Query: 432 SDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD 491
+ K + + + L + Q Q + +KA + D
Sbjct: 247 GSEKAKAGIMDKVDHKTPEE------IYEALGFNNEEPQRQNQAKKAAYDVFYSFSMNRD 300
Query: 492 EAENNALKG--------GKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKEL 543
+++ L G K L + L E+ + + K +R + +
Sbjct: 301 RIQSDVLNKAAEVISDIGNKVGDYLGDAYKSLAREIADDVKNFQG--KTIRSYDDAMA-- 356
Query: 544 SFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ-IEEA-----EEIAALNLAKFRKAQQELE 597
+ ++ K + + A L KA + +
Sbjct: 357 ------------SLNKVLSNPGFKFNRADSDALANVWRSIDAQDMANKLGNISKAFKFAD 404
Query: 598 EAEERADLAEQAVSKIRT 615
+ + E+++ T
Sbjct: 405 VVMKVEKVREKSIEGYET 422
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 32.5 bits (75), Expect = 0.59
Identities = 16/145 (11%), Positives = 46/145 (31%), Gaps = 41/145 (28%)
Query: 418 AAKRKLEGELQTLHSDLDE------LLNEAKNSEEKAKKAMVDAARLAD---ELRAEQDH 468
+++ L+ + ++E L+ A E+ KA+V A L D
Sbjct: 739 PPAQEVRVYLEGETAPVEENLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDV 798
Query: 469 AQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE---------- 518
+ + + K L+ + ++ +++ L +
Sbjct: 799 EEWRRRQEKRLKELLAL-------------------AERSQRK---LASPGFREKAPKEV 836
Query: 519 LDGEQRRHADAQKNLRKTERRIKEL 543
++ E+ R + + + + ++
Sbjct: 837 VEAEEARLKENLEQAERIREALSQI 861
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 32.2 bits (74), Expect = 0.61
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 345 DVQTALEEEQRARD--DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
D +E E RAR+ D R+ E+ L+ E+ ++ E + R + T
Sbjct: 253 DEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKE 312
Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLH 431
+ + K KLE + L
Sbjct: 313 RSYIKYREKRQQQPLKPKEKLERDSNVLP 341
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
helical barrel, beta barrel; 2.10A {Escherichia coli}
SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Length = 428
Score = 32.0 bits (73), Expect = 0.75
Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 11/162 (6%)
Query: 302 AALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALE--EEQRARDD 359
AL E A ++ Q L A A N+ L Q E Q +
Sbjct: 82 RALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTT 141
Query: 360 AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAA 419
R +G+V +++ +R + A L +A EQL +++ A
Sbjct: 142 QRFNVGLVAI------TDVQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYP-ELA 194
Query: 420 KRKLEGELQTLHSDLDELLNEAK--NSEEKAKKAMVDAARLA 459
+E ++ LL EA+ N + D AR
Sbjct: 195 ALNVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQ 236
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 30.7 bits (69), Expect = 0.94
Identities = 33/156 (21%), Positives = 76/156 (48%), Gaps = 1/156 (0%)
Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
++ +L + + + LE E+ L L+ A+ SE K+ + + + + L++
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 465 EQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR 524
+ A+ + E +IK L +L EAE A ++++ KLE+ + +LE+EL ++
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF-AERSVTKLEKSIDDLEDELYAQKL 119
Query: 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL 560
++ + +++ E +++EL + R++ L
Sbjct: 120 KYKAISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 32.0 bits (72), Expect = 0.95
Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
Q +E L D R + + + ++ + A + EL L
Sbjct: 317 EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEM 376
Query: 434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493
+ E E + +AR + + D T L + +K R
Sbjct: 377 IGEQDIEPLLQAANSDSEDAQSARQ-ELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHT 435
Query: 494 ENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKN 553
L + +V + + R D R + + + D +
Sbjct: 436 IKLPL----PTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRV 491
Query: 554 HERMQDLVDKLQQKI 568
M L QK+
Sbjct: 492 EWLMGYLTSHRSQKV 506
Score = 30.8 bits (69), Expect = 1.7
Identities = 37/347 (10%), Positives = 100/347 (28%), Gaps = 28/347 (8%)
Query: 197 AIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 256
+ + A + + + + + +EQ E
Sbjct: 620 VLVRWYHEGLDAFEHTCPT----GRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHE 675
Query: 257 AVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEEN 316
A++ + + D + ++ GE + + E + + + + +
Sbjct: 676 ALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGD 735
Query: 317 KVL------RAQLELSQANAEAQKNI---KRYQQQLKDVQ---------TALEEEQRARD 358
++ + +E I + +D Q + + D
Sbjct: 736 NMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGD 795
Query: 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISA 418
+ +++ +A + L E ++E + Q L ++ L +++A
Sbjct: 796 TGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRM-LLDKNGNNLAA 854
Query: 419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
+ E +T + L+ + + A + V A E + E+ + R
Sbjct: 855 -----QVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNE 909
Query: 479 LETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525
+ ++ RL+ + +E +++ LD R
Sbjct: 910 ADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWR 956
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 31.7 bits (71), Expect = 0.95
Identities = 33/241 (13%), Positives = 66/241 (27%), Gaps = 38/241 (15%)
Query: 359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQL-NELSAQATSIS 417
D ++ V+ + + QL A R+ ++L + A + S
Sbjct: 182 DLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQ 241
Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK 477
L + S + K D ++ D L +
Sbjct: 242 MDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKN--DLFQMLDTLS---LYQGLLSNFPD 296
Query: 478 ALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTE 537
+ Q K Q++ R +++E DG +RR L+
Sbjct: 297 IIHLQKGAFAKV-------------KESQRMSDEGRMVQDEADGIRRRCRVVGFALQ--- 340
Query: 538 RRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELE 597
AE + + R D +Q + ++QI + + K + +
Sbjct: 341 ---------AEMNHFHQRRELDFKHMMQNYL---RQQILFYQRVGQQ----LEKTLRMYD 384
Query: 598 E 598
Sbjct: 385 N 385
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 31.3 bits (70), Expect = 1.0
Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 15/148 (10%)
Query: 466 QDHAQTQEKLRKALETQI-KELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR 524
+ ++ ++R+ L + ++ A + + GG +A + E R+ + +
Sbjct: 89 ERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLK 148
Query: 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 584
++K+ + K + + + Q+ + KLQ+++ ++ E+ +
Sbjct: 149 EVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQ 208
Query: 585 NLAKFRKAQ--------------QELEE 598
LA+ + Q E
Sbjct: 209 TLAELNRYTPRYMEDMEQAFESCQAAER 236
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEENKV--LRAQLELSQANA 330
+ A + +++ +AA E AE L+ +++ + RA+L L +A
Sbjct: 79 AQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMN 125
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 31.0 bits (71), Expect = 1.2
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQ 394
+ G+V R ++ LQ+ L + L +A+R +R
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMLQSALADRSAALAEAERLKRD 42
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 31.2 bits (71), Expect = 1.2
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 14/137 (10%)
Query: 357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI 416
R D ++ + QL++ AD R+ + ++ N S I
Sbjct: 9 RVDKGGDPALIRETQEKRFKDPGLVDQLVK-ADSEWRRCRFRADNLNKLKNLCSKT---I 64
Query: 417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLR 476
+K E D+ A A +++ +
Sbjct: 65 GEKMKKKE-------PVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAI--- 114
Query: 477 KALETQIKELQIRLDEA 493
+ + +L+ E
Sbjct: 115 LKCDAERIKLEAERFEN 131
Score = 31.2 bits (71), Expect = 1.5
Identities = 13/127 (10%), Positives = 35/127 (27%), Gaps = 17/127 (13%)
Query: 255 LEAVRRENKNLADEVKDLLDQIGEGGRNIHEV---EKARKRLEVEKDELQA--------- 302
L+ R + +++ ++ + + ++ + +R D L
Sbjct: 5 LDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTI 64
Query: 303 -----ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR 357
E EN + L IK+ + + + + E+
Sbjct: 65 GEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKL 124
Query: 358 DDAREQL 364
+ R +
Sbjct: 125 EAERFEN 131
Score = 30.5 bits (69), Expect = 2.4
Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 25/129 (19%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
R + R + L +++ + +R ++L K
Sbjct: 20 RETQEKRFKDPG-----LVDQLVKADSEWRRCRFRADNLN--------------KLKNLC 60
Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
K IGE + E + F A A ++ +++ + + +
Sbjct: 61 SKTIGEKM------KKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 270 KDLLDQIGE 278
+ +
Sbjct: 115 LKCDAERIK 123
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 31.4 bits (71), Expect = 1.2
Identities = 41/208 (19%), Positives = 62/208 (29%), Gaps = 37/208 (17%)
Query: 306 EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
A L++ E L + + + K I R + V A +Q+
Sbjct: 337 LALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALN----HTAGLSTPQQVQ 392
Query: 366 IVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ---ATSISAAKRK 422
+ AL +E +E + L+Q R R +E + + K
Sbjct: 393 MALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDYYTLIDLQDVTAK 452
Query: 423 LEGE-----LQTLHSDLD---ELLNEAK---------------------NSEEKAKKAMV 453
L GE S D + +E N E A+
Sbjct: 453 LYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIG 512
Query: 454 DA-ARLADELRAEQDHAQTQEKLRKALE 480
A ++ADEL AE KL ALE
Sbjct: 513 RALRKMADELYAEYSGQAQNLKLAAALE 540
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 30.9 bits (69), Expect = 1.3
Identities = 21/157 (13%), Positives = 65/157 (41%), Gaps = 5/157 (3%)
Query: 164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDL 223
I L++++ +LE + +++ + + N E++ A+ + + + + D
Sbjct: 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72
Query: 224 AAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNI 283
A++ + QK+ +E + + + + E+++L ++I
Sbjct: 73 NAKIASIQKKMSEIKSERE-----LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127
Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLR 320
+++K LE EL++ +E +++ + + +
Sbjct: 128 EDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164
Score = 29.3 bits (65), Expect = 3.6
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 9/173 (5%)
Query: 282 NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQ 341
I ++K LE E + L++A E + +L + E + K
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK------- 64
Query: 342 QLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD 401
+ + A + ER +L E + +++ QA+R + E+
Sbjct: 65 --NEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKR 122
Query: 402 AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD 454
E+ +L + + +LE ++ ++ E +E +
Sbjct: 123 KSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175
Score = 28.9 bits (64), Expect = 5.4
Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 6/155 (3%)
Query: 426 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKE 485
E+ L ++D L + + KA+ D + ++ + E +++
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71
Query: 486 LQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSF 545
++ + K + K E+ +R L E D + R A + + + IK S
Sbjct: 72 TNAKIASIQK------KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125
Query: 546 QAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
+ E+ +K ++ L +L+ ++ + I+E ++
Sbjct: 126 KQEDLKKEMLELEKLALELESLVENEVKNIKETQQ 160
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein;
NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Length = 102
Score = 29.1 bits (65), Expect = 1.4
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIK 484
G+L L DL E+L + K + D + + L+ +K
Sbjct: 3 GKLNDLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMK 62
Query: 485 ELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
E Q LDE NN L+GGK + +EQ ++E+ + L+
Sbjct: 63 EFQQVLDEL-NNHLQGGKHTVHHIEQNIKEIFHHLE 97
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ-KNIKRYQQQL 343
+ A + ++++ A +AE + V AQ A A AQ + I+ ++ +
Sbjct: 80 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM 138
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris,
coiled-coil, structur genomics, PSI-2, protein
structure initiative; 2.00A {Xanthomonas campestris PV}
Length = 78
Score = 28.6 bits (64), Expect = 1.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 17 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL--QLEVDRANAIANAAE 67
L+ RL+ E+ + L++ + T R A + L L R+ A+AA+
Sbjct: 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADAAD 71
Score = 28.6 bits (64), Expect = 1.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDL--QLEVDRANAIANAAE 203
L+ RL+ E+ + L++ + T R A + L L R+ A+AA+
Sbjct: 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADAAD 71
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 29.4 bits (67), Expect = 1.5
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 252 QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE--- 308
Q + E +++ D++++ +I E R I + ++ + LQ A+ +AE
Sbjct: 14 QTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73
Query: 309 -AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
AL+ NK+ + L +A + + ++ Y Q+L + + AL+ E
Sbjct: 74 ELALKDARNKLAELEEALQKAKQDMARLLREY-QELMNTKLALDVE 118
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 31.0 bits (71), Expect = 1.5
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 15/50 (30%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLE-LSQANAEAQKNIKRYQQQLKDV 346
E AA + L+ + ++N Y++ L D+
Sbjct: 245 SEAAAA--------------MGLTSLDAFPEVIDRNRRNHAAYREHLADL 280
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO
bundle, rudimentary enzymatic activitie; 2.20A
{Synthetic construct}
Length = 102
Score = 29.1 bits (65), Expect = 1.5
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIK 484
G+L L + ELL + + + + + D + ++L E H + L+ I
Sbjct: 3 GKLNKLVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQGNQDDGKLQNMIH 62
Query: 485 ELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
E+Q +++ +N L+ + +++EL N
Sbjct: 63 EMQQFMNQV-DNHLQSESDTVHHFHNKLQELMNNFH 97
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 30.7 bits (69), Expect = 1.6
Identities = 13/133 (9%), Positives = 42/133 (31%)
Query: 504 AIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDK 563
++ ++ + L+ + + + ++ R K+ + + E+R+ H+ +
Sbjct: 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL 143
Query: 564 LQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARG 623
+ +R++EE + + Q+ + +
Sbjct: 144 TRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKR 203
Query: 624 SSPLKLVCSVTFC 636
P L ++F
Sbjct: 204 DIPDYLCGKISFE 216
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 31.0 bits (69), Expect = 1.6
Identities = 45/268 (16%), Positives = 97/268 (36%), Gaps = 12/268 (4%)
Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG--GRNIHEVEKARKRLEVEKDELQAAL 304
+ +EA + ++ NK LA + + + E N EV+KA+K LE + +
Sbjct: 311 SLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLE 370
Query: 305 EEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQL 364
+E E LE + +A A+A + + RA +
Sbjct: 371 KEVEKKLESKS-----GNKNKMEAKAQANSQKDEIFAL---INKEANRDARAIAYTQNLK 422
Query: 365 GIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE 424
GI ++ L+ ++ + + D + + + A E L L + +
Sbjct: 423 GIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWIS 482
Query: 425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL-ETQI 483
+++ L++ L+E N K +A D ++ Q + L +A+ +
Sbjct: 483 -KVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKA 541
Query: 484 KELQIRLDEAENNALKGGKKAIQKLEQR 511
R+++ + K+ + + Q+
Sbjct: 542 MGDFSRVEQVLADLKNFSKEQLAQQAQK 569
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 30.8 bits (69), Expect = 1.6
Identities = 22/182 (12%), Positives = 68/182 (37%), Gaps = 5/182 (2%)
Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
++ R+ ++ ++E I +DEA N K + E+ + E+ ++ +Q + ++++
Sbjct: 161 IDRYREFIDIDLREYMIVIDEAHN-----LDKVNELEERSLSEITIQMAIKQSKSEESRR 215
Query: 532 NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK 591
L K +++E+ E+ K + ++L+ Y+ +++ + +N
Sbjct: 216 ILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGS 275
Query: 592 AQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHL 651
+ + + ++ K ++ + L T+ +
Sbjct: 276 ILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSIILMSGTLPPREYMEKVW 335
Query: 652 FL 653
+
Sbjct: 336 GI 337
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis,
F1-ATPase, single analysis, thermoalkaliphilic,
hydrolase; 3.06A {Bacillus SP}
Length = 135
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEENK---VLRAQLELSQANA 330
+ A E++ + + A E L++ + LR + L +A
Sbjct: 79 ADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEV 126
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 30.3 bits (69), Expect = 1.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 241 LFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNI 283
L++ + EEA+ QL + + + VK L+D + R I
Sbjct: 239 LYKNSLSLEEAKVQLSELAQAGGDGDAAVKALVDFVESSQRGI 281
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 30.5 bits (69), Expect = 1.8
Identities = 7/77 (9%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 507 KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
K+ + + + E + + I+ L + + +++ V +L+
Sbjct: 1 KMLEEIMKYEASIL--------------THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46
Query: 567 KIKTYKRQIEEAEEIAA 583
+ + + + +I
Sbjct: 47 QCQEPCKDTVQIHDITG 63
Score = 29.0 bits (65), Expect = 5.4
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 470 QTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADA 529
E ++ I+ LQ + I L+++V +LE + +
Sbjct: 7 MKYEASILTHDSSIRYLQEIYNSNNQK--------IVNLKEKVAQLEAQCQEPCKDTVQI 58
Query: 530 QK 531
Sbjct: 59 HD 60
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics,
PSI-2, protein ST initiative; NMR {Agrobacterium
tumefaciens str}
Length = 112
Score = 29.0 bits (65), Expect = 1.8
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 279 GGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENK--VLRAQLELSQANAEAQKNI 336
G VE K L + EL L + EA E+ N RA + +
Sbjct: 2 AGGKSMNVESYEKILRDRQRELYRRLHKIEADFEEPRNPDDEDRASERSNDEVLDELGQ- 60
Query: 337 KRYQQQLKDVQTALE 351
Q +L+ + AL
Sbjct: 61 -VGQDELRAIDAALA 74
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 270 KDLLDQIGEGGRNIHEVEKARKRL-----EVEKDELQAALEEAEAALEQEENKVLRAQLE 324
+ L +Q E R + + A E+ + A + ++ + ++
Sbjct: 139 RMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIK 198
Query: 325 -LSQANAEAQKNIKRYQQQLKDVQT 348
+ + + +R Q ++
Sbjct: 199 NVDKQTQDFAA--RRMDQSVRRALK 221
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct
genomics, joint center for structural genomics, JCSG;
HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Length = 377
Score = 30.6 bits (70), Expect = 2.0
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 15/50 (30%)
Query: 298 DELQAALEEAEAALEQEENKVLRAQLE-LSQANAEAQKNIKRYQQQLKDV 346
E AA+ A ++ E + + Y+Q L+
Sbjct: 236 SEYAAAI--------------GIATMKKWDDKLKERTRISEWYKQLLQSN 271
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 30.6 bits (70), Expect = 2.2
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
R++ + R L+ L DR ++ + L + + N+++ + + A
Sbjct: 8 RQEPEVFHRAIREKGVALDLEA--LLALDREVQELKKRLQEVQTERNQVAKR---VPKAP 62
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
+ + + L+ K E+AK+ L A
Sbjct: 63 PE----------EKEALIARGKALGEEAKRLEEALREKEARLEA 96
Score = 28.6 bits (65), Expect = 8.8
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 22/105 (20%)
Query: 253 EQLEAVRR--ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA---ALEEA 307
++ E R K +A +++ LL +++ + L+ E+Q + +
Sbjct: 9 QEPEVFHRAIREKGVALDLEALL-----------ALDREVQELKKRLQEVQTERNQVAKR 57
Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
EE + L A+ + KR ++ L++ + LE
Sbjct: 58 VPKAPPEEKEALIARG------KALGEEAKRLEEALREKEARLEA 96
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, ATP synthesis, CF1, hydrogen ION transport,
hydrolase; NMR {Thermosynechococcus elongatus} PDB:
2rq7_A
Length = 138
Score = 29.2 bits (66), Expect = 2.4
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEENK-----VLRAQLELSQANA 330
V A + ++ ++ +A A+AAL Q E ++A +A A
Sbjct: 78 VNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARA 127
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.3 bits (68), Expect = 2.5
Identities = 13/140 (9%), Positives = 37/140 (26%), Gaps = 20/140 (14%)
Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEA-----------ENNALKGGKKAIQKLE 509
L H +E++ + ++ I + + G +
Sbjct: 12 GLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTI 71
Query: 510 QRVREL-----ENELDG---EQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLV 561
+ +R+ E R Q + + + A R + + +
Sbjct: 72 ENLRQAYLRMGFEEYINPVIVDERDIYKQ-FGPEAMAVLDRCFYLAGLPRPDVGLSDEKI 130
Query: 562 DKLQQKIKTYKRQIEEAEEI 581
++++ E ++I
Sbjct: 131 SQIEKLGIKVSEHKESLQKI 150
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 30.4 bits (68), Expect = 2.6
Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 11/236 (4%)
Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366
A A+ N + A L L+ A A + +Q L+ VQ L +A Q+
Sbjct: 169 AMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVA 228
Query: 367 VERRANALQN--ELEESRQLLEQA---DRGRRQAETELADAHEQLNELSAQATSISAAKR 421
+ Q ++ +L QA + A + L + + A
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQA-H 287
Query: 422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL----ADELRAEQDHAQTQEKLRK 477
L + + + + + A L + + Q E +++
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQR-LLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR 346
Query: 478 ALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNL 533
L + + D+ A GG K + QR+ + + G A +
Sbjct: 347 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 402
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein,
multidrug resistanc membrane protein; HET: BOG; 1.80A
{Vibrio cholerae}
Length = 442
Score = 30.4 bits (69), Expect = 2.6
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARD- 358
+AA+ A + L E + + A+L +S + A A + R + V AL+ + +
Sbjct: 118 NRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVEL 177
Query: 359 -DAREQLGIVER--RANALQNELEESRQLLEQADRGRRQAETELA 400
+ R G+ + A + L + + LA
Sbjct: 178 LEKRYANGLETLGSVSQA-KAVAASVEAELLGIQESIQLQKNALA 221
Score = 29.2 bits (66), Expect = 5.7
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 24/114 (21%)
Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDD 359
+ AA E AA + A+L +S + A A + R + V AL+ +
Sbjct: 122 VVAATSELAAAEAESVA----ARLMISTSIANAYAELARLYANQETVHAALQVRNKT--- 174
Query: 360 AREQLGIVERRANA-LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ 412
+ ++E+R L+ QA+ A +L +
Sbjct: 175 ----VELLEKRYANGLETLGS------------VSQAKAVAASVEAELLGIQES 212
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 30.1 bits (68), Expect = 2.7
Identities = 24/203 (11%), Positives = 51/203 (25%), Gaps = 5/203 (2%)
Query: 178 KQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNY 237
+A E+ L++D + A A++ + W+ + L Q
Sbjct: 19 LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAV-HAWRNALTGAPLNLTPEQVVAIAS 77
Query: 238 STELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK 297
+ + L + + + +
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137
Query: 298 DELQAALEEAEAALEQEEN----KVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
+++ A E VL L+ A + +Q L+ VQ L
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 354 QRARDDAREQLGIVERRANALQN 376
+A +Q+ + Q
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQA 220
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 29.9 bits (67), Expect = 2.8
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Query: 233 ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI-GEGGRNIHEVEKARK 291
R+ EL + G +E A EQL + L + R A
Sbjct: 32 SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATA 91
Query: 292 RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEA 332
++ E +EL +L ++ ++ + + + +
Sbjct: 92 KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 30.3 bits (69), Expect = 3.0
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 440 EAKNSEEKAKKAMVDAARLADELRAEQD---HAQTQEKLRKALETQIK------ELQIRL 490
A S++K KK +D R DEL+ E H + ++L T + + L
Sbjct: 18 NATKSKKKGKKDKIDKKRDLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEIL 77
Query: 491 DEAENNALKGGKK--AIQK-LEQ 510
N+L K Q
Sbjct: 78 ARDGPNSLTPPPTTPEWIKFCRQ 100
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 30.3 bits (69), Expect = 3.0
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 537 ERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE-IAALNLAKFRKAQQE 595
++ +++ AE DRK E + ++ + + ++Q+EEA + + A + A
Sbjct: 513 QKMVRDAEANAEADRKFDELV-QTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTA 571
Query: 596 LEEAEERADLAE 607
LE A + D A
Sbjct: 572 LETALKGEDKAA 583
Score = 29.5 bits (67), Expect = 4.1
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 23/99 (23%)
Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL-----EVEKDELQAA 303
E ++ E V + +N D + +H K + +K +++A
Sbjct: 524 EADRKFDELV--QTRNQGDHL-------------LHSTRKQVEEAGDKLPADDKTAIESA 568
Query: 304 LEEAEAALEQEENKVLRAQLE-LSQANAEAQKNIKRYQQ 341
L E AL+ E+ + A+++ L+Q + + + QQ
Sbjct: 569 LTALETALKGEDKAAIEAKMQELAQVSQKLMEIA--QQQ 605
Score = 28.7 bits (65), Expect = 7.0
Identities = 15/91 (16%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 432 SDLDELLNEA-KNSEE-KAKKAMVDAARLADEL--RAEQDHAQTQEKL----RKALETQI 483
++ +++ +A N+E + +V D L + + +KL + A+E+ +
Sbjct: 510 DEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESAL 569
Query: 484 KELQIRLDEAENNALKGGKKAIQKLEQRVRE 514
L+ L + A++ + + ++ Q++ E
Sbjct: 570 TALETALKGEDKAAIEAKMQELAQVSQKLME 600
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 29.8 bits (68), Expect = 3.2
Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
++ L +R E++ L + R + LS + + ++ D+
Sbjct: 9 LEALHERHEEVQALL---------GDAQTIADQERFRALS-------REYAQLSDVSRCF 52
Query: 565 QQKIKTYKRQIEEAEEIAALNLAKFRK-AQQELEEAEERADLAEQAV 610
+ + IE A+ + L+ + R+ AQ EL EA+E+++ EQ +
Sbjct: 53 TD-WQQVQEDIETAQMM--LDDPEMREMAQDELREAKEKSEQLEQQL 96
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 29.7 bits (66), Expect = 3.2
Identities = 18/154 (11%), Positives = 52/154 (33%), Gaps = 7/154 (4%)
Query: 243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA 302
+L+ +E Q+ E + +K +EV L+ + ++K+++ + E +
Sbjct: 95 KLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQER 154
Query: 303 ALEEAEAALEQE--ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
+E E E K +A + ++Q++ + ++ +
Sbjct: 155 LKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIH 214
Query: 361 REQL-----GIVERRANALQNELEESRQLLEQAD 389
+++ ++ + EE +
Sbjct: 215 IKEIIGSLSNAIKEIHLQIGQVHEEFINNMANTT 248
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 29.7 bits (66), Expect = 3.5
Identities = 18/135 (13%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 466 QDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525
E L + ++ + + K+ + Q R + +L+ ++
Sbjct: 83 GQRELVAENLSVRVCLELTKYSQEM-----------KQERKMHFQEGRRAQQQLENGFKQ 131
Query: 526 HADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALN 585
++++ + R ++ + AE ++ + V+K +Q+ EE++ A
Sbjct: 132 LENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQ 191
Query: 586 LAKFRKAQQELEEAE 600
L +F + Q ++
Sbjct: 192 LQRFNRDQAHFYFSQ 206
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 28.6 bits (65), Expect = 3.5
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 252 QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA-- 309
+ E + RE ++ V+ +I E R + +E + K L+ +LEE +
Sbjct: 16 FTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75
Query: 310 --ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
L Q + + + +L+Q E ++ + Y + L DV+T LE+E
Sbjct: 76 CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY-KILLDVKTRLEQE 120
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 29.9 bits (66), Expect = 3.7
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
E+ K L + +E + ++ ++ E L + Q L
Sbjct: 341 EELTTTLKVLCMPAEEFRELKDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSVLLTL 400
Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
+ T L+ +Q + + R ALQ + + +L Q
Sbjct: 401 QTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQ-KMILHQL 444
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 29.4 bits (67), Expect = 3.8
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 23/91 (25%)
Query: 253 EQLEAVRRENKNLADEVKDL--LDQI-----GEGGRNIHEVEKARKRLEVE--------- 296
L + K + D+ LD + G+ G + + L E
Sbjct: 2 SHLAELVASAKAAISQASDVAALDNVRVEYLGKKGH-LTLQMTTLRELPPEERPAAGAVI 60
Query: 297 ---KDELQAALEEAEAALEQEENKVLRAQLE 324
K+++Q AL +A LE L A+L
Sbjct: 61 NEAKEQVQQALNARKAELESAA---LNARLA 88
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 29.8 bits (66), Expect = 3.9
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 15/89 (16%)
Query: 472 QEKLRKALETQIKELQ---------------IRLDEAENNALKGGKKAIQKLEQRVRELE 516
E LR+ +E KEL L + L + + + L
Sbjct: 50 HEILRRRIENGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLS 109
Query: 517 NELDGEQRRHADAQKNLRKTERRIKELSF 545
R +A+ +RRI L
Sbjct: 110 QTDGAGDWREKEAKDLTELVQRRITYLQN 138
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.5 bits (67), Expect = 4.0
Identities = 14/65 (21%), Positives = 34/65 (52%)
Query: 282 NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQ 341
N+ E+E+ + EKD + E +AA ++ + LR Q+E ++ + + ++ + +
Sbjct: 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEV 454
Query: 342 QLKDV 346
+ D+
Sbjct: 455 TVDDI 459
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 29.6 bits (66), Expect = 4.3
Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 36/195 (18%)
Query: 420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL 479
KRK + + L ++++ + K + +K + + + +
Sbjct: 587 KRK-DHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAI----------------- 628
Query: 480 ETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERR 539
I+EL+ N K GK + E N++ G D + + TE
Sbjct: 629 ---IQELENLGFPRFN---KEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENV 682
Query: 540 IKELSFQAEE-----DRKNHERMQDLVDKLQQKIKTYKRQIEE-----AEEIAALNLAKF 589
I + ++ KL ++ + + ++E A++I +L F
Sbjct: 683 INGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 742
Query: 590 RKA--QQELEEAEER 602
+ +AE R
Sbjct: 743 EVGYQEFLQRDAEAR 757
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.4 bits (65), Expect = 4.4
Identities = 19/113 (16%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 482 QIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIK 541
++ + + N + K + ++E+ RE ++ ++ Q K + +++
Sbjct: 294 KLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKM--KKMEMEMEQVFEMKVKEKVQ 351
Query: 542 ELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQ 594
+L E ++ HE+M+ ++ ++++ +RQ E +E A + QQ
Sbjct: 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFE--DEKANWEAQQRILEQQ 402
Score = 28.6 bits (63), Expect = 7.4
Identities = 17/122 (13%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDH--AQTQEKLRKALETQIKELQIRLD 491
L + ++ + + +E R E + + ++ + E ++KE +L
Sbjct: 295 LAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLK 354
Query: 492 EAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDR 551
++E + ++ + LE + +ELE + + A+ + R E++ + + + +
Sbjct: 355 DSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKK 414
Query: 552 KN 553
Sbjct: 415 GK 416
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 29.5 bits (67), Expect = 4.9
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 476 RKALETQIKELQIRLDEAENNALKGGKKAIQKLEQR----VRE-LENELD 520
+ Q+ L+ L GG A + R VRE + LD
Sbjct: 39 AATMLEQVNALRTLLGRI---HEGGGSAAQARHSARGKLLVRERINRLLD 85
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs,
transferase; 2.40A {Infectious bursal disease virus}
PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Length = 852
Score = 29.6 bits (65), Expect = 5.0
Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 7/184 (3%)
Query: 75 KIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPF 134
+++G W + + + A A E K +D+ + EW + +
Sbjct: 634 RLVGGWNYPLLNKACKNNAGAARRHLEAKGFPLDEFLAEWSELSEFGEAFEGFNIKL-TV 692
Query: 135 LNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 194
+E + P+ P + +++++ + + + + L R
Sbjct: 693 TSESLAELNKPV--PPKPPNVNRPVNTGGLKAVSNALKTGRYRNEAGLSGLVLLATARSR 750
Query: 195 AN----AIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEE 250
A A A + D +W + + L+ L+ + + + L A E
Sbjct: 751 LQDAVKAKAEAEKLHKSKPDDPDADWFERSETLSDLLEKADIASKVAHSALVETSDALEA 810
Query: 251 AQEQ 254
Q
Sbjct: 811 VQST 814
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.0 bits (64), Expect = 5.0
Identities = 15/137 (10%), Positives = 45/137 (32%)
Query: 383 QLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK 442
+ +D + + D + Q+ + + + K +L+ L + +
Sbjct: 75 ESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLL 134
Query: 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK 502
EKAK A + ++ +A L ++ + + + + +
Sbjct: 135 AKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYE 194
Query: 503 KAIQKLEQRVRELENEL 519
+AI ++ + ++
Sbjct: 195 QAIAEITKYNSVYIEDM 211
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 28.4 bits (64), Expect = 5.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL 325
+EK + + E L+ L+ AE L+ ++K LR +
Sbjct: 9 TLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADF 49
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 29.5 bits (67), Expect = 5.5
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 468 HAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI--QKLEQRVR 513
H + E L + L+ KEL R+ + + + Q+L++R
Sbjct: 243 HYLSPEGLEEILKEIEKELWERVRY-----FEERGEVLYAQRLKERTL 285
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 29.3 bits (66), Expect = 5.6
Identities = 25/204 (12%), Positives = 56/204 (27%), Gaps = 6/204 (2%)
Query: 399 LADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
A A+E L + +S + + ++ L+ LN+ + + + D R
Sbjct: 99 RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNK-QAMKVLNENLSKDEGRG 157
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
+ L + A LE D A ++ ++ +
Sbjct: 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL 217
Query: 519 LDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578
L + + ++E + A L + L + I
Sbjct: 218 LTKSTDMYHSLLSANTVDD-PLRENAALALCYTGI---FHFLKNNLLDAQVLLQESINLH 273
Query: 579 EEIAAL-NLAKFRKAQQELEEAEE 601
+ LA ++ +E +
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFK 297
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 28.7 bits (65), Expect = 5.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 296 EKDELQAALEEAEAALEQEENKVLRAQLELS 326
E D+ A ++A AA+ + V A++ L+
Sbjct: 99 EYDQALADAQQANAAVTAAKAAVETARINLA 129
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 27.1 bits (61), Expect = 6.0
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 297 KDELQAALEEAEA----ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
+ L+ + E E ++ + R Q E+ E ++++ Y Q L +V+ AL+
Sbjct: 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY-QDLLNVKMALDI 68
Query: 353 E 353
E
Sbjct: 69 E 69
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 6.1
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 221 DDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADE---VKDL---LD 274
+ +A ++ R +S + E A L + E L + + DL L
Sbjct: 683 NIIAEGIEKMG--VRTFSQK--------EMAFNLLGLLTPEVVELCQKSPVMADLNGGLQ 732
Query: 275 QIGEGGRNIHEV-EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ 333
+ + E K RK L E E++ A+ E ALE + A +Q + +
Sbjct: 733 FV----PELKEFTAKLRKELV-ETSEVRKAVS-IETALEHKVVNGNSADAAYAQVEIQPR 786
Query: 334 KNIKRYQQQLKDVQTALE 351
NI+ +LK + +
Sbjct: 787 ANIQLDFPELKPYKQVKQ 804
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 29.0 bits (65), Expect = 6.2
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 453 VDAARLADELRAEQDHAQTQEKLRKALETQIKE-----LQIRLDEAENNALKGGKKAIQK 507
V A + Q ++L A + +++ +++ + +Q+
Sbjct: 495 VHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQT------LQQ 548
Query: 508 LEQRVREL 515
L +V L
Sbjct: 549 LLAQVSHL 556
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 29.1 bits (65), Expect = 6.5
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKA 592
+ + + ++++ + K + + ++ + I R ++A+EIA RKA
Sbjct: 181 INEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRKA 240
Query: 593 QQELEE 598
EL E
Sbjct: 241 --ELNE 244
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA
cleavage, RNAse, DN protein; 2.10A {Drosophila
melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Length = 249
Score = 28.5 bits (63), Expect = 6.5
Identities = 12/71 (16%), Positives = 28/71 (39%)
Query: 341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
+ Q ++ EQ R++ R + +E + Q +L+ L Q A ++
Sbjct: 22 DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 81
Query: 401 DAHEQLNELSA 411
++ +L+
Sbjct: 82 LCAQKYQKLAE 92
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 28.9 bits (65), Expect = 6.6
Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 14/181 (7%)
Query: 377 ELEESRQLLEQADRGRRQAET--ELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
+E+ + +QA + ++A E +A +++N+L ++++ + + +
Sbjct: 12 NIEKLKASFQQALQSFQKASNAEEQNEAMKEINQLRNDFSTMAQ--------ICYIRHTI 63
Query: 435 DELLNEAKNSEEKAKKAMVDAARLADE----LRAEQDHAQTQEKLRKALETQIKELQIRL 490
D K ++ + L ++ L + +Q + K K L +
Sbjct: 64 DTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEGKWGKQLFALAEAELKTY 123
Query: 491 DEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEED 550
L+ K + + V + +GE+R A Q + +R +++ + +A
Sbjct: 124 SPDIVEDLQLENKLTSEYTKLVASAKIFFEGEERTLAQLQPFVESPDRDMRKRASEARFT 183
Query: 551 R 551
Sbjct: 184 F 184
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.1 bits (66), Expect = 6.8
Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 33/139 (23%)
Query: 362 EQLGIVERRANALQNELEESRQLLEQADRGRRQA-ETELADAHEQLNELSAQATSISAAK 420
E++ +ER+ L+ E E ++ + + R +A E E+A E++ +L A+ +
Sbjct: 401 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAE---WERER 457
Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
L L+ L DE+R E + A+ Q L +A E
Sbjct: 458 EILRK-LREAQHRL-------------------------DEVRREIELAERQYDLNRAAE 491
Query: 481 TQ---IKELQIRLDEAENN 496
+ + +L+ ++
Sbjct: 492 LRYGELPKLEAEVEALSEK 510
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain,
hydrophobic GATE magnesium binding site, metal
transport; 1.28A {Saccharomyces cerevisiae}
Length = 261
Score = 28.6 bits (63), Expect = 6.9
Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 3/118 (2%)
Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN 532
+ + + +L+ ++ + L K + Q+ + + LD D
Sbjct: 144 KLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANM 203
Query: 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFR 590
++ K+ E + + D+ Q+ ++ + I+ EEI + L R
Sbjct: 204 YLTVKKSPKDNFSDLEMLIETYYT---QCDEYVQQSESLIQDIKSTEEIVNIILDANR 258
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 28.4 bits (63), Expect = 7.2
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 4/172 (2%)
Query: 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ 327
++DLL + E + E VE + ++E+ K+ RA+ + Q
Sbjct: 13 YLQDLLAWVEENQHRVDGAEWGVDLPSVE--AQLGSHRGLHQSIEEFRAKIERARSDEGQ 70
Query: 328 ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ 387
+ + + +L L +AR + E L A L E +
Sbjct: 71 LSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEEEVG 130
Query: 388 ADRGRRQAETE-LADAHEQL-NELSAQATSISAAKRKLEGELQTLHSDLDEL 437
D R +++ L EL + I + + L+ H +
Sbjct: 131 FDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTV 182
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 28.7 bits (64), Expect = 7.5
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 13/136 (9%)
Query: 243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA 302
GA E R LL ++ A +R+E
Sbjct: 549 DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE-------- 600
Query: 303 ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR--AR--D 358
AL E + Q VL L+ + N + +I + ++ +E R AR
Sbjct: 601 ALPPTEPRVLQIRALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAP 660
Query: 359 DAREQLGIVERRANAL 374
R + +V+ AN +
Sbjct: 661 TQRHRYTLVD-MANKV 675
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 28.7 bits (65), Expect = 7.8
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 20/107 (18%)
Query: 505 IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
+Q +E R EL L + ++ +R ELS + ++ V
Sbjct: 19 LQAVEDRYEELGELL---------SDPDVVSDTKRFMELS-------REEANSRETVAVY 62
Query: 565 QQKIKTYKRQIEEAEEIAALNL--AKFRK-AQQELEEAEERADLAEQ 608
++ K + I +A+E+ + + A++EL+ ++ + E+
Sbjct: 63 RE-YKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEE 108
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 28.4 bits (64), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 297 KDELQAALEEAEAALEQEENKVLRAQLE 324
K L+AALE E ALE+ L+ LE
Sbjct: 58 KAALEAALEAREKALEEAA---LKEALE 82
>1vl4_A PMBA-related protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS regulation; 1.95A {Thermotoga maritima} SCOP:
d.283.1.1
Length = 447
Score = 28.4 bits (64), Expect = 8.4
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 46 ATEVEDLQLEVDRANAIANAAEKKAKAI----DKIIGEWKL--KVSLQLEVDRANAIANA 99
+E+ + + A + + + K K E + +L V +A
Sbjct: 78 TQVLENPEKCFEEALSNLQVKDSEEKEYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKK 137
Query: 100 AEKKAKAIDKII 111
A + A ++++
Sbjct: 138 AHESAAKDERVV 149
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 28.6 bits (64), Expect = 9.3
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 408 ELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQD 467
+ +A + E+ LL + S + + A RL + +R D
Sbjct: 2 HMPNIPPPFTAPYAPDDAEI------AARLLPASHLSPPQEARIHRTATRLIEAIRKRDD 55
Query: 468 HAQTQEKL 475
E +
Sbjct: 56 RLGGVEDM 63
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 28.3 bits (63), Expect = 9.7
Identities = 24/192 (12%), Positives = 65/192 (33%), Gaps = 10/192 (5%)
Query: 190 LEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE 249
+ A +++A+ + + DL A + + + E G
Sbjct: 9 AQAQEAQETEVLVQEEAEELPEFPEG--EPDPDLEDPDLALEDDLLDLPEE-----GEGL 61
Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
+ +E+ E + + +D V+ L +IG+ E E L + +E A+++
Sbjct: 62 DLEEEEEDLPIPKISTSDPVRQYLHEIGQVPLLTLEEE---VELARKVEEGMEAIKKLSE 118
Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
+ + + +A + + ++++ ++ ++ + R
Sbjct: 119 ITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAR 178
Query: 370 RANALQNELEES 381
A + L E+
Sbjct: 179 EGEAARQHLIEA 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.321
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,544,265
Number of extensions: 694174
Number of successful extensions: 5062
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4205
Number of HSP's successfully gapped: 1133
Length of query: 721
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 621
Effective length of database: 3,909,693
Effective search space: 2427919353
Effective search space used: 2427919353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.3 bits)