RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4651
(721 letters)
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 31.0 bits (69), Expect = 0.45
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 240 ELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNI 283
++R +E + ++ E EVK D R +
Sbjct: 221 LIYRSGKTLDEVKPEIA----ELAETYPEVKAFTDFFARSTRGL 260
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 128
Score = 29.5 bits (66), Expect = 0.63
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 324 ELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR-----DDAREQLGIVERRANALQNEL 378
++ +E I+ +Q + T E R R+ G + L
Sbjct: 65 DIIMDKSENLAVIETLKQTYDEALTFFENNDRQGFIDAFHKVRDWFGDYSEQF------L 118
Query: 379 EESRQLLEQA 388
+ESRQLL+QA
Sbjct: 119 KESRQLLQQA 128
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 30.1 bits (67), Expect = 1.3
Identities = 49/325 (15%), Positives = 107/325 (32%), Gaps = 8/325 (2%)
Query: 220 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG 279
+ E+ Q+ + L + + ++E V++E L + +++
Sbjct: 177 LVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYK 236
Query: 280 GRNIHEVEKARKRLEVEKD---ELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI 336
I E++ EL+ E A L +E+ V L + I
Sbjct: 237 PGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEI 296
Query: 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAE 396
Q L + + L ++ R E E L E E + Q E
Sbjct: 297 VEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPE 356
Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
+A +++ + A + LH L+ +A+ + +
Sbjct: 357 GARVEAGDKIVAAIDPEEEVIAEAEGVV----HLHEPASILVVKARVYPFEDDVEVSTGD 412
Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELE 516
R+A D + + + +E + +R+ E+ + + G +AIQ+L + +
Sbjct: 413 RVA-PGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEA 471
Query: 517 NELDGEQRRHADAQKNLRKTERRIK 541
E + + ++ K +R++
Sbjct: 472 LEKELLEEMKHPSRARRAKARKRLE 496
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing
protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Length = 239
Score = 28.7 bits (64), Expect = 2.1
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 79 EWKLKVSLQLEVDRANAIANAAEKKAKAIDKI--IGEWKLKGSLDFINTLYCLLFIPFLN 136
S+++ + + + K IG + ++ D +N + +L +P +N
Sbjct: 142 GMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVN 201
Query: 137 EKSLKHPYPL 146
EK L+ +PL
Sbjct: 202 EK-LQKGFPL 210
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium
roqueforti) [TaxId: 5082]}
Length = 300
Score = 29.0 bits (64), Expect = 2.3
Identities = 6/50 (12%), Positives = 14/50 (28%)
Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTA 349
+ A + + E E + + K Y + L+ +
Sbjct: 242 IPATKRVLWSMTREWETVHDEIVAEKIASPDGCSEAAKAYMKGLEYQMSG 291
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.0 bits (64), Expect = 2.6
Identities = 21/186 (11%), Positives = 66/186 (35%), Gaps = 15/186 (8%)
Query: 420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL 479
+++ + + L ++++ + K + +K + + + + E ++ ++
Sbjct: 588 QKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGK 647
Query: 480 ETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERR 539
+ N +KG + E + EN ++G + + + L
Sbjct: 648 --PYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWS 705
Query: 540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEE- 598
+ + ++++ + + +++ + A++I +L F QE +
Sbjct: 706 LTKE---------RYQKLLKQKQEKETELENLLKL--SAKDIWNTDLKAFEVGYQEFLQR 754
Query: 599 -AEERA 603
AE R
Sbjct: 755 DAEARG 760
Score = 27.9 bits (61), Expect = 6.1
Identities = 18/150 (12%), Positives = 49/150 (32%), Gaps = 8/150 (5%)
Query: 465 EQDHAQTQEKLRKALETQIKELQIRLDEAENNA--LKGGKKAIQKLEQRVR-ELENEL-- 519
+ + E +K + + LQ +++ +K + + + R + EL
Sbjct: 577 SEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELEN 636
Query: 520 DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
G R + + + I E + + E + + + I + E
Sbjct: 637 LGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYE 696
Query: 580 EIAALNLAKFRK-AQQELEEAEERADLAEQ 608
+ + + K Q+L +++ + +
Sbjct: 697 YLLGMRIWSLTKERYQKLL--KQKQEKETE 724
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 28.1 bits (61), Expect = 3.8
Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 4/155 (2%)
Query: 226 ELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHE 285
L + ++ +G + A + + D +L + + E G
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 286 VEKARKRLEVEKDELQAALEEAEAALEQEEN----KVLRAQLELSQANAEAQKNIKRYQQ 341
+ L + + A EQ ++ R LE+ A A N+ Q
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 342 QLKDVQTALEEEQRARDDAREQLGIVERRANALQN 376
Q +Q AL + A + N L+
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438
{Mycoplasma genitalium [TaxId: 2097]}
Length = 181
Score = 27.6 bits (60), Expect = 3.9
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIA 582
E+ + + + +V L QK+ YK+++ I
Sbjct: 127 AGEIKVPYVKSFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIR 169
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 28.0 bits (62), Expect = 4.5
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 31/169 (18%)
Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
R+ L +A + L +AL +D + A A+A
Sbjct: 334 TRRTIFELRKARDRAHILEALAVALAN---------------IDPIIELIRHAPTPAEAK 378
Query: 210 DKIIGEWKLKVDDLAAELDASQKECR--NYSTELFRLKGAYEEAQEQLEAV--------- 258
++ + A A R E G Y ++Q +A+
Sbjct: 379 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 438
Query: 259 RRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL-EVEKDELQAALEE 306
E++ L DE K+LLDQI E + + + RL EV ++EL+ E+
Sbjct: 439 GLEHEKLLDEYKELLDQIAE----LLRILGSADRLMEVIREELELVREQ 483
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 25.8 bits (57), Expect = 4.5
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
A++LR E D ++ R + I E + D EN ++ E R++++E +
Sbjct: 10 AEKLREELDFLKSVR--RPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAK 67
Query: 519 LD 520
L
Sbjct: 68 LS 69
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 137
Score = 26.5 bits (58), Expect = 6.5
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 553 NHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAK-FRKAQQELEEAEERADLAEQAVS 611
Q K+ +Y++ + E A + K F + E E + + + E A
Sbjct: 66 LGLFSQHFNLATFNKLVSYRKAMYHTLEKARVRAGKTFSSSPGESLEDQLKP-MLEWAHG 124
Query: 612 KIRTKG 617
+ G
Sbjct: 125 GFKPTG 130
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 27.6 bits (60), Expect = 6.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 252 QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL 293
+++ E + R N+ A E++ +Q + + RK L
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQ-------LFQSNMERKEL 36
Score = 27.2 bits (59), Expect = 8.8
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 340 QQQLKDVQTALEEEQRARDDAREQL--GIVERRANALQNELEESR 382
+Q+ +++ E++ + +EQL +ER+ L N + + R
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERK--ELHNTVMDLR 44
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
associated protein, CAP {Dictyostelium discoideum
[TaxId: 44689]}
Length = 176
Score = 26.6 bits (59), Expect = 6.8
Identities = 10/58 (17%), Positives = 25/58 (43%)
Query: 365 GIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRK 422
V + L ++ + L+ A + ++ ++ L + + LN +A+ I + R
Sbjct: 25 PEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRS 82
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 26.0 bits (57), Expect = 7.8
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 378 LEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE-GELQTLHSDLDE 436
++E+++ L+ + + E D E +NE ++ + + L L+
Sbjct: 11 VDETKEYLQNLNDTLLELEKNPEDM-ELINEAFRALHTLKGMAGTMGFSSMAKLCHTLEN 69
Query: 437 LLNEAKNSEEKAKKAMVDAARLA-DELRAEQDHAQT 471
+L++A+NSE K ++D D + D +
Sbjct: 70 ILDKARNSEIKITSDLLDKIFAGVDMITRMVDKIVS 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.126 0.321
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,385,977
Number of extensions: 116954
Number of successful extensions: 966
Number of sequences better than 10.0: 1
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 288
Length of query: 721
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 629
Effective length of database: 1,144,436
Effective search space: 719850244
Effective search space used: 719850244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.6 bits)