BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4652
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UJK0|TSR3_HUMAN Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3
PE=1 SV=1
Length = 312
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 114/191 (59%), Gaps = 42/191 (21%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
MW++ HCDP++C+GRKLAR L++ L+LG RF G
Sbjct: 62 MWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGG-------------------------- 95
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
+ L+PVG Q S AD ++ ++G AV+DCSWA+++ETPF KM+
Sbjct: 96 ----------------LVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRG 139
Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
+H RLLP+L+AANP+NYG+P +LSCVEA AATF I GFP A L KFKWG+ FL LN
Sbjct: 140 SHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNR 199
Query: 181 ELLDLYKECDT 191
+LLD Y C +
Sbjct: 200 QLLDKYAACGS 210
>sp|Q5HZH2|TSR3_MOUSE Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3
PE=2 SV=1
Length = 323
Score = 184 bits (466), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 42/189 (22%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
MW++ HCDPK+C+GRKLAR L++ L+L +RF G
Sbjct: 62 MWELGHCDPKRCTGRKLARLGLVRCLRLSQRFGG-------------------------- 95
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
+ L+PVG + VS AD ++ ++G AV+DCSWAK+++TPF KM+
Sbjct: 96 ----------------LVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRG 139
Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
+H RLLP+L+AANP+NYG+PCKLSCVEA AA F I GF A L KFKWG+ FL LN
Sbjct: 140 SHLRLLPYLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNR 199
Query: 181 ELLDLYKEC 189
ELLD Y C
Sbjct: 200 ELLDKYAAC 208
>sp|Q10409|TSR3_SCHPO Ribosome biogenesis protein tsr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tsr3 PE=3 SV=1
Length = 288
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 42/189 (22%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
MWD HC+P CSG++L R ++ L++G++FRG
Sbjct: 31 MWDFGHCNPNACSGKRLERLGCVRNLRIGQKFRG-------------------------- 64
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
+ +TP G VS AD + GA+VV+CSWA+IEE PF+++
Sbjct: 65 ----------------VVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGG 108
Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
RLLP+L+A+NP+NYG+P +L+C EALAA I G+P EA+ +D FKWG +F +NE
Sbjct: 109 RCERLLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNE 168
Query: 181 ELLDLYKEC 189
ELLD+Y +C
Sbjct: 169 ELLDIYAQC 177
>sp|Q12094|TSR3_YEAST Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR3 PE=1 SV=1
Length = 313
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 109/189 (57%), Gaps = 42/189 (22%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
MWD HCDPK+CSG+KL R LIK L++G++F+G
Sbjct: 50 MWDFDHCDPKRCSGKKLERLGLIKSLRVGQKFQG-------------------------- 83
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
I ++P G V D +I++++GA+VV+CSWA++EE PFNK+
Sbjct: 84 ----------------IVVSPNGKGVVCPDDLEIVEQHGASVVECSWARLEEVPFNKIGG 127
Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
H RLLP+L+AAN +NYG+P +L+CVEALAA F I G A L F WG FL LN+
Sbjct: 128 KHERLLPYLVAANQVNYGRPWRLNCVEALAACFAIVGRMDWASELLSHFSWGMGFLELNK 187
Query: 181 ELLDLYKEC 189
ELL++Y++C
Sbjct: 188 ELLEIYQQC 196
>sp|Q2NET3|TSR3_METST Probable ribosome biogenesis protein Msp_1293 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1293 PE=3 SV=1
Length = 171
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 94/190 (49%), Gaps = 42/190 (22%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
++ CDPK+C+ KL + N + I R P A
Sbjct: 6 IYHSNECDPKRCTSIKLQKQNKVAIT---HNMRKIPYNA--------------------- 41
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFN-KMK 119
I L + VS+ D + I + G + +DCSW K++++ FN K K
Sbjct: 42 ----------------IVLDAEADKAVSREDREKITKYGLSALDCSWKKLKKSSFNFKSK 85
Query: 120 TNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLN 179
NH RLLPFL+AANP+NYGKPC LS EAL+A I G+ EA+ ++ FKWG F+TLN
Sbjct: 86 KNH-RLLPFLVAANPVNYGKPCILSSAEALSAALYIVGYKDEARDLMNSFKWGPHFITLN 144
Query: 180 EELLDLYKEC 189
E LL+ Y E
Sbjct: 145 ENLLEAYSEA 154
>sp|A5UJF3|TSR3_METS3 Probable ribosome biogenesis protein Msm_0126 OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0126
PE=3 SV=1
Length = 171
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 69/115 (60%)
Query: 77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
+ L P + VS D+ + G +DCSW ++ + + + R LPFLIA NP+N
Sbjct: 41 VVLNPFAQKAVSYEDYRYVHRRGVVGLDCSWNEVSSSKKFFSLSKYHRSLPFLIATNPVN 100
Query: 137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDT 191
YGKPC LS VEA++AT I F EAK LD FKWG TFL LN +LL+ Y E DT
Sbjct: 101 YGKPCILSTVEAVSATLYITRFKDEAKDILDGFKWGHTFLELNHDLLEAYSEADT 155
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 35 FPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDT 68
F EAK LD FKWG TFL LN +LL+ Y DT
Sbjct: 122 FKDEAKDILDGFKWGHTFLELNHDLLEAYSEADT 155
>sp|Q8TXM4|TSR3_METKA Probable ribosome biogenesis protein MK0638 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0638 PE=3 SV=1
Length = 169
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Query: 77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEE--TPFNKMKTNHPRLLPFLIAANP 134
+ L P + +S+ D D E G VDCSW + P + + H R+LP+LIAANP
Sbjct: 39 VVLDPTVEKALSREDRDAALERGLVAVDCSWEHVHRYFGPLRR-RCRH-RILPYLIAANP 96
Query: 135 INYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDT 191
+NYGKPCKLS VEALAA I GF +EA+ ++ +FKWG FL LN E L+ Y+ +T
Sbjct: 97 VNYGKPCKLSTVEALAAALYILGFRREAEEFISRFKWGPAFLELNRERLEAYRRAET 153
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 34 GFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDT 68
GF +EA+ ++ +FKWG FL LN E L+ Y+ +T
Sbjct: 119 GFRREAEEFISRFKWGPAFLELNRERLEAYRRAET 153
>sp|O26654|TSR3_METTH Probable ribosome biogenesis protein MTH_554 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_554 PE=3 SV=2
Length = 169
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 65/115 (56%)
Query: 77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
+ L P + VS D D++ G A +DCSW K++++ + R LPFL+AANP N
Sbjct: 41 LVLNPFSEKAVSPEDRDMVLRRGIAALDCSWKKVKKSSVIFQTARNHRSLPFLVAANPTN 100
Query: 137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDT 191
YGKPC LS EA+AAT I G A + FKWG FL LN ELL+ Y +
Sbjct: 101 YGKPCILSTAEAVAATLYIVGLKDIASDIMSYFKWGPHFLDLNRELLEAYSRAEN 155
>sp|Q12ZL9|TSR3_METBU Probable ribosome biogenesis protein Mbur_0088 OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_0088 PE=3 SV=1
Length = 173
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 44/190 (23%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
++ K CDPKKC+G+K+AR L +I ++ + P+ +
Sbjct: 13 IFHAKQCDPKKCTGKKMARFELARIF---DKVQKIPRGS--------------------- 48
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
I L P+ Q +S AD E V+DCSW +EE + M+
Sbjct: 49 ----------------ILLDPMAKQALSPADK---HEQNITVLDCSWETVEEVFPHLMRL 89
Query: 121 N-HPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLN 179
+ R LP+L+A NP+N+G+P KL+ VEA AA I G K+A+ L KF WG FL +N
Sbjct: 90 HLQHRALPYLVATNPVNFGRPFKLTSVEAFAAALYILGNKKQAEKILSKFNWGHVFLDMN 149
Query: 180 EELLDLYKEC 189
+E L+ Y +
Sbjct: 150 KEPLEDYSKA 159
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 34 GFPKEAKFYLDKFKWGRTFLTLNEELLDLY-KACDT 68
G K+A+ L KF WG FL +N+E L+ Y KA D+
Sbjct: 127 GNKKQAEKILSKFNWGHVFLDMNKEPLEDYSKAKDS 162
>sp|Q8PSK5|TSR3_METMA Probable ribosome biogenesis protein MM_3074 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=MM_3074 PE=3 SV=1
Length = 173
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
++ CDPKKC+GRK+AR L + L +R P+ A
Sbjct: 13 IYHAGQCDPKKCTGRKMARFELAR---LYDRISRLPRSA--------------------- 48
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEET--PFNKM 118
I L P+ + +S AD + G V+DCSW ++E K+
Sbjct: 49 ----------------ILLDPMAEKALSPADDP---KKGIIVLDCSWEEVERVFPELEKL 89
Query: 119 KTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTL 178
H R LP+++A NP+N+G+P KL+ EA AA I G+ ++A+ + KF WG +FL L
Sbjct: 90 NLEH-RALPYMLAGNPVNFGRPFKLNSAEAFAAALYILGYKEQAEKVMSKFNWGHSFLEL 148
Query: 179 NEELLDLY 186
N E L+ Y
Sbjct: 149 NREPLEEY 156
>sp|Q8TMY6|TSR3_METAC Probable ribosome biogenesis protein MA_2508 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_2508 PE=3 SV=1
Length = 174
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
++ CDPKKC+GRK+AR L + L ++ P+ A
Sbjct: 14 IYHAGQCDPKKCTGRKMARFELAR---LYDKISRLPRSA--------------------- 49
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEET--PFNKM 118
I L P+ + +S AD + G V+DCSW ++E K+
Sbjct: 50 ----------------ILLDPMAEKALSPADD---PKKGIIVLDCSWEEVERVFPELEKL 90
Query: 119 KTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTL 178
H R LP+++A NP+N+G+P KL+ EA AA I G+ ++A+ + KF WG +FL L
Sbjct: 91 NLEH-RALPYMLAGNPVNFGRPFKLNSAEAFAAALYILGYKEQAEKVMSKFNWGHSFLEL 149
Query: 179 NEELLDLY 186
N E LD Y
Sbjct: 150 NREPLDEY 157
>sp|Q469W0|TSR3_METBF Probable ribosome biogenesis protein Mbar_A2412 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A2412 PE=3
SV=1
Length = 173
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
++ CDPKKC+GRKLAR +L + L +R P+ A
Sbjct: 13 IYHAGQCDPKKCTGRKLARFDLAR---LYDRISRLPRSA--------------------- 48
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEET--PFNKM 118
I L P + +S AD + G V+DCSW ++E K+
Sbjct: 49 ----------------ILLDPTVEKALSPADD---YKKGIIVLDCSWEEVERVFPDLAKL 89
Query: 119 KTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTL 178
H R LP+L+A NP+N+G+P KL+ EA AA I G ++A+ L KF WG +FL L
Sbjct: 90 NLKH-RALPYLLAGNPVNFGRPFKLNSAEAFAAALYILGHKEQAEKVLSKFNWGHSFLEL 148
Query: 179 NEELLDLY 186
N+E L+ Y
Sbjct: 149 NKEPLEEY 156
>sp|Q58118|TSR3_METJA Probable ribosome biogenesis protein MJ0708 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0708 PE=3 SV=1
Length = 172
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 41/186 (22%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
++ C+PKKC+ K+A+ N +LK + +K + L LN
Sbjct: 9 IYHANQCNPKKCTSLKMAKMNKAILLK----------------NPYKVPKNSLILN---- 48
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
P + +S D +I+++ G +DCSW K E F K K
Sbjct: 49 --------------------PYAEKALSPEDKEIVEKFGITALDCSW-KEAELMFKKFKF 87
Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
+ R LPFL+A NPINYGKPC LS +EA A I F EA FKW TF+ +N
Sbjct: 88 KNQRSLPFLVACNPINYGKPCMLSTLEAFIAALYITNFKDEAWDLTSCFKWAETFIKVNY 147
Query: 181 ELLDLY 186
ELL+ Y
Sbjct: 148 ELLERY 153
>sp|C3NEV4|TSR3_SULIY Probable ribosome biogenesis protein YG5714_1581 OS=Sulfolobus
islandicus (strain Y.G.57.14 / Yellowstone #1)
GN=YG5714_1581 PE=3 SV=1
Length = 166
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 46/183 (25%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DPKKC+GRKL + L ++ ++G RG
Sbjct: 12 DPKKCTGRKLVKLKLAELTRVG---RG--------------------------------- 35
Query: 68 TVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLP 127
I L P + +S D DI+ ++G ++D SW + F ++ H RL P
Sbjct: 36 ---------IILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-P 85
Query: 128 FLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 187
L A NPI+YG KLS +EAL AT I KEA + + KWG TF+ LN+ELL+ Y+
Sbjct: 86 ILFAGNPIHYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAYR 145
Query: 188 ECD 190
D
Sbjct: 146 NKD 148
>sp|C3NGU0|TSR3_SULIN Probable ribosome biogenesis protein YN1551_1255 OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2)
GN=YN1551_1255 PE=3 SV=1
Length = 166
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 46/183 (25%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DPKKC+GRKL + L ++ ++G RG
Sbjct: 12 DPKKCTGRKLVKLKLAELTRVG---RG--------------------------------- 35
Query: 68 TVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLP 127
I L P + +S D DI+ ++G ++D SW + F ++ H RL P
Sbjct: 36 ---------IILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-P 85
Query: 128 FLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 187
L A NPI+YG KLS +EAL AT I KEA + + KWG TF+ LN+ELL+ Y+
Sbjct: 86 ILFAGNPIHYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAYR 145
Query: 188 ECD 190
D
Sbjct: 146 NKD 148
>sp|C3MWA4|TSR3_SULIM Probable ribosome biogenesis protein M1425_1577 OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1577
PE=3 SV=1
Length = 166
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 46/183 (25%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DPKKC+GRKL + L ++ ++G RG
Sbjct: 12 DPKKCTGRKLVKLKLAELTRVG---RG--------------------------------- 35
Query: 68 TVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLP 127
I L P + +S D DI+ ++G ++D SW + F ++ H RL P
Sbjct: 36 ---------IILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-P 85
Query: 128 FLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 187
L A NPI+YG KLS +EAL AT I KEA + + KWG TF+ LN+ELL+ Y+
Sbjct: 86 ILFAGNPIHYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAYR 145
Query: 188 ECD 190
D
Sbjct: 146 NKD 148
>sp|C3MQM6|TSR3_SULIL Probable ribosome biogenesis protein LS215_1685 OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1685
PE=3 SV=1
Length = 166
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 46/183 (25%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DPKKC+GRKL + L ++ ++G RG
Sbjct: 12 DPKKCTGRKLVKLKLAELTRVG---RG--------------------------------- 35
Query: 68 TVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLP 127
I L P + +S D DI+ ++G ++D SW + F ++ H RL P
Sbjct: 36 ---------IILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-P 85
Query: 128 FLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 187
L A NPI+YG KLS +EAL AT I KEA + + KWG TF+ LN+ELL+ Y+
Sbjct: 86 ILFAGNPIHYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAYR 145
Query: 188 ECD 190
D
Sbjct: 146 NKD 148
>sp|C4KHW1|TSR3_SULIK Probable ribosome biogenesis protein M164_1574 OS=Sulfolobus
islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1574
PE=3 SV=1
Length = 166
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 46/183 (25%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DPKKC+GRKL + L ++ ++G RG
Sbjct: 12 DPKKCTGRKLVKLKLAELTRVG---RG--------------------------------- 35
Query: 68 TVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLP 127
I L P + +S D DI+ ++G ++D SW + F ++ H RL P
Sbjct: 36 ---------IILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-P 85
Query: 128 FLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 187
L A NPI+YG KLS +EAL AT I KEA + + KWG TF+ LN+ELL+ Y+
Sbjct: 86 ILFAGNPIHYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAYR 145
Query: 188 ECD 190
D
Sbjct: 146 NKD 148
>sp|C3N6E6|TSR3_SULIA Probable ribosome biogenesis protein M1627_1693 OS=Sulfolobus
islandicus (strain M.16.27) GN=M1627_1693 PE=3 SV=1
Length = 166
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 46/183 (25%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DPKKC+GRKL + L ++ ++G RG
Sbjct: 12 DPKKCTGRKLVKLKLAELTRVG---RG--------------------------------- 35
Query: 68 TVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLP 127
I L P + +S D DI+ ++G ++D SW + F ++ H RL P
Sbjct: 36 ---------IILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-P 85
Query: 128 FLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 187
L A NPI+YG KLS +EAL AT I KEA + + KWG TF+ LN+ELL+ Y+
Sbjct: 86 ILFAGNPIHYGIAYKLSSLEALMATLYILDEMKEAIKFSNVVKWGHTFIELNKELLEAYR 145
Query: 188 ECD 190
D
Sbjct: 146 NKD 148
>sp|Q9HM46|TSR3_THEAC Probable ribosome biogenesis protein Ta0023 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta0023 PE=3 SV=2
Length = 163
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 90/187 (48%), Gaps = 44/187 (23%)
Query: 4 MKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLY 63
+K DPKK + RKL R + + R P A+ DK L L
Sbjct: 9 LKQDDPKKSTMRKLERFGIAR--------RISPGGAR---DK--------------LMLT 43
Query: 64 KACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHP 123
++ DTVL SK D I + +G V++ SW + E F ++ +
Sbjct: 44 RSADTVL-----------------SKNDRFIAERSGICVIEGSWNR--EDTFAGLRFPYG 84
Query: 124 RLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELL 183
R LP L+AANP+NYGK KLS +EA+AA I GF +A L K+ WG+ FL LN+ L
Sbjct: 85 RRLPKLLAANPVNYGKLEKLSSIEAVAAALYIMGFQDDASAILSKYTWGQNFLQLNKNPL 144
Query: 184 DLYKECD 190
D Y+E D
Sbjct: 145 DEYREAD 151
>sp|Q975W6|TSR3_SULTO Probable ribosome biogenesis protein STK_03110 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=STK_03110 PE=3 SV=1
Length = 167
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 80/187 (42%), Gaps = 46/187 (24%)
Query: 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELL 60
+ D DPKKC+GRKL + N ++ + G+
Sbjct: 5 IIDYHRDDPKKCTGRKLIKLNFAELTRYGKG----------------------------- 35
Query: 61 DLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKT 120
I L P + +S D DI + G +VD SW + F K+K
Sbjct: 36 ----------------IILDPYSKRILSILDKDIALKTGITIVDTSWNSTSKIEFEKIKG 79
Query: 121 NHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNE 180
H RL P L A NP NYG KLS +EA+ A+ I +EA + KWG TFL LN+
Sbjct: 80 EHRRL-PILFAGNPTNYGIAYKLSSIEAVIASLYILNEVEEAIKIANIIKWGHTFLELNK 138
Query: 181 ELLDLYK 187
ELL+ Y+
Sbjct: 139 ELLESYR 145
>sp|Q9UWV6|TSR3_SULSO Probable ribosome biogenesis protein SSO0551 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0551 PE=3 SV=2
Length = 166
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPIN 136
+ L P +S D DI++ G +VD SW ++ F ++ H R+ P L A NPI+
Sbjct: 36 VVLDPFAQITLSNKDKDIVRRIGITIVDTSWNNTSQSEFKNIRGEHRRI-PILFAGNPIH 94
Query: 137 YGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYK 187
YG KLS +EAL AT I +EA + KWG TF+ LN+ELL+ YK
Sbjct: 95 YGIAYKLSSIEALIATLYIVDEVEEAIKLSNVVKWGHTFIELNKELLEAYK 145
>sp|Q9HNJ6|TSR3_HALSA Probable ribosome biogenesis protein VNG_2075C OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_2075C PE=3 SV=2
Length = 176
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 83/184 (45%), Gaps = 49/184 (26%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DP+KC+ RKLAR +L + + G R P
Sbjct: 23 DPEKCTARKLARFDLAALHRTG---RETPA------------------------------ 49
Query: 68 TVLFIFLMRICLTPVGVQCVSKADH-DIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLL 126
+ L P + +S AD D++ +DCSW F ++ H R L
Sbjct: 50 --------GVVLNPHAERALSPADDTDML-----VALDCSWETAGRAMF-EIDGEH-RAL 94
Query: 127 PFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLY 186
PFL+AANP+NYG+P +L+ VEA A I G + A+ L KF WG TFL LNEE L Y
Sbjct: 95 PFLVAANPVNYGQPFQLNTVEAFAGALAILGRWERAEELLSKFTWGHTFLELNEEPLRRY 154
Query: 187 KECD 190
+C+
Sbjct: 155 ADCE 158
>sp|B0R700|TSR3_HALS3 Probable ribosome biogenesis protein OE_3895F OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_3895F
PE=3 SV=1
Length = 165
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 83/184 (45%), Gaps = 49/184 (26%)
Query: 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACD 67
DP+KC+ RKLAR +L + + G R P
Sbjct: 12 DPEKCTARKLARFDLAALHRTG---RETPA------------------------------ 38
Query: 68 TVLFIFLMRICLTPVGVQCVSKADH-DIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLL 126
+ L P + +S AD D++ +DCSW F ++ H R L
Sbjct: 39 --------GVVLNPHAERALSPADDTDML-----VALDCSWETAGRAMF-EIDGEH-RAL 83
Query: 127 PFLIAANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLY 186
PFL+AANP+NYG+P +L+ VEA A I G + A+ L KF WG TFL LNEE L Y
Sbjct: 84 PFLVAANPVNYGQPFQLNTVEAFAGALAILGRWERAEELLSKFTWGHTFLELNEEPLRRY 143
Query: 187 KECD 190
+C+
Sbjct: 144 ADCE 147
>sp|Q97CM6|TSR3_THEVO Probable ribosome biogenesis protein TV0075 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV0075 PE=3 SV=1
Length = 164
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 75 MRICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANP 134
+++ LTP +S+ D + ++ G V++ SW KI+ +K R LP L+AANP
Sbjct: 38 LKLVLTPYADIFLSREDAVLYEKYGLCVIEGSWNKIDS--IKSLKFRIERRLPALLAANP 95
Query: 135 INYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECD 190
+NYGK LS VEA AA I G+ A L KF WG F+ LNE L+ Y D
Sbjct: 96 VNYGKIGILSSVEATAAALYIIGYWDTAYALLSKFSWGLNFIKLNENPLNEYSTAD 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,289,637
Number of Sequences: 539616
Number of extensions: 5278244
Number of successful extensions: 96187
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 67632
Number of HSP's gapped (non-prelim): 15422
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)