Query psy4652
Match_columns 291
No_of_seqs 156 out of 432
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 22:17:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3154|consensus 100.0 2.7E-76 5.8E-81 535.2 12.6 171 1-257 47-217 (263)
2 COG2042 Uncharacterized conser 100.0 1.3E-70 2.9E-75 479.9 9.9 163 1-250 16-178 (179)
3 PRK02287 hypothetical protein; 100.0 3.3E-70 7.2E-75 476.5 10.4 164 1-249 6-169 (171)
4 PF04034 DUF367: Domain of unk 100.0 8.1E-63 1.7E-67 413.5 9.3 127 77-248 1-127 (127)
5 PF04034 DUF367: Domain of unk 99.9 1.9E-23 4E-28 176.1 3.8 59 16-74 62-120 (127)
6 KOG3154|consensus 99.8 4E-22 8.6E-27 182.3 4.2 59 16-74 143-201 (263)
7 COG2042 Uncharacterized conser 99.8 1.1E-21 2.3E-26 172.7 3.7 59 16-74 111-169 (179)
8 PRK02287 hypothetical protein; 99.8 1.1E-21 2.4E-26 172.1 3.6 59 16-74 103-161 (171)
9 PF04068 RLI: Possible Fer4-li 98.7 7.6E-09 1.6E-13 70.4 1.1 28 1-28 5-32 (35)
10 PF03942 DTW: DTW domain; Int 93.7 0.051 1.1E-06 47.7 2.7 72 96-171 113-194 (203)
11 KOG2409|consensus 49.9 8.2 0.00018 40.8 1.3 35 218-253 20-54 (647)
12 PRK05844 pyruvate flavodoxin o 48.0 20 0.00043 31.2 3.2 88 94-185 86-180 (186)
13 PF04889 Cwf_Cwc_15: Cwf15/Cwc 42.8 8.7 0.00019 36.0 0.2 18 274-291 141-158 (244)
14 cd00593 RIBOc RIBOc. Ribonucle 42.7 18 0.00039 28.5 2.0 29 141-169 95-123 (133)
15 KOG4032|consensus 42.0 19 0.00042 33.1 2.2 21 177-197 89-109 (184)
16 smart00535 RIBOc Ribonuclease 38.9 23 0.00049 28.1 2.0 27 142-168 94-120 (129)
17 PRK06274 indolepyruvate oxidor 38.4 34 0.00073 29.7 3.1 46 137-185 138-187 (197)
18 TIGR02618 tyr_phenol_ly tyrosi 36.6 24 0.00052 36.0 2.2 55 93-151 124-198 (450)
19 PF13524 Glyco_trans_1_2: Glyc 36.4 31 0.00067 25.6 2.3 44 133-179 4-47 (92)
20 KOG3988|consensus 31.5 22 0.00048 35.4 1.0 25 47-71 208-232 (378)
21 smart00013 LRRNT Leucine rich 29.9 31 0.00068 22.5 1.2 15 101-115 11-25 (33)
22 PRK06702 O-acetylhomoserine am 27.0 1.8E+02 0.0039 29.2 6.4 68 149-220 277-345 (432)
23 COG0703 AroK Shikimate kinase 26.8 87 0.0019 28.2 3.8 77 43-134 49-126 (172)
24 PF09361 Phasin_2: Phasin prot 25.6 2.1E+02 0.0045 21.3 5.2 71 175-253 4-74 (102)
25 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 24.8 35 0.00075 25.2 0.8 10 130-139 40-49 (50)
26 PTZ00446 vacuolar sorting prot 24.6 2.1E+02 0.0045 26.3 5.9 22 147-168 54-75 (191)
27 COG4402 Uncharacterized protei 24.5 32 0.00069 34.8 0.7 16 2-19 313-328 (457)
28 PRK08534 pyruvate ferredoxin o 22.3 74 0.0016 27.5 2.5 83 94-185 86-172 (181)
No 1
>KOG3154|consensus
Probab=100.00 E-value=2.7e-76 Score=535.23 Aligned_cols=171 Identities=58% Similarity=1.141 Sum_probs=166.4
Q ss_pred CCCCCCCCCCCcchhhhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeC
Q psy4652 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLT 80 (291)
Q Consensus 1 m~d~~~cDpkkcsg~kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~ 80 (291)
||||+||||||||||||.||+||..|..+..+-| ||||
T Consensus 47 mwdf~hCdpkrCsGkKL~rlglv~~lr~g~kF~G------------------------------------------vVlS 84 (263)
T KOG3154|consen 47 MWDFGHCDPKRCSGKKLARLGLVRNLRVGQKFGG------------------------------------------VVLS 84 (263)
T ss_pred hhcccCCCccccchHHHHhhhhHHHhhccCccCc------------------------------------------eEEC
Confidence 9999999999999999999999999999999999 9999
Q ss_pred CCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCChH
Q psy4652 81 PVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPK 160 (291)
Q Consensus 81 P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~~ 160 (291)
|+|++||||+|+++|.+.|++||||||++|+++||.||+..|+||||||||||||||||||+|||||||||+|||+||++
T Consensus 85 P~gk~~vsp~D~d~v~~~G~avvdCSWArLdevpF~kl~~~h~RLLP~lVAANpVNYGrP~rLnCvEAlaA~l~I~G~~e 164 (263)
T KOG3154|consen 85 PVGKQCVSPADRDVVERSGAAVVDCSWARLDEVPFGKLRGRHERLLPYLVAANPVNYGRPWRLNCVEALAACLYICGFPE 164 (263)
T ss_pred CCCCcccCHHHHHHHHhcCceEEecchhhccccchhhcCCCcccccchhhhcCccccCCCceecHHHHHHhHeeeecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCcHHHH
Q psy4652 161 EAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV 240 (291)
Q Consensus 161 ~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~~Ev~ 240 (291)
+|..+|++|||||.||+|| +++|+.|++|.+++||+
T Consensus 165 ~A~~lL~~F~wG~~Fl~lN--------------------------------------------~~lLd~Ya~C~~s~ev~ 200 (263)
T KOG3154|consen 165 EARELLDKFKWGHAFLELN--------------------------------------------KDLLDEYAKCASSAEVV 200 (263)
T ss_pred HHHHHHhcCcchHHHHHHh--------------------------------------------HHHHHHHHhhCCHHHHH
Confidence 9999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q psy4652 241 KVQNEYLKKIEEERNMP 257 (291)
Q Consensus 241 ~iq~eyl~~~~~~~~~~ 257 (291)
++|++|++++++..+.+
T Consensus 201 ~~qn~~Le~~~~~~Qe~ 217 (263)
T KOG3154|consen 201 EVQNEFLESQEKSPQEP 217 (263)
T ss_pred HHHHHHHHHhhhcccCC
Confidence 99999999888764443
No 2
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-70 Score=479.93 Aligned_cols=163 Identities=51% Similarity=0.944 Sum_probs=158.8
Q ss_pred CCCCCCCCCCCcchhhhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeC
Q psy4652 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLT 80 (291)
Q Consensus 1 m~d~~~cDpkkcsg~kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~ 80 (291)
|||++|||||||||+||.|+++|+.+.-+....| ||||
T Consensus 16 i~~~~qcDPKkCT~~KL~R~g~a~~~r~~~~~~~------------------------------------------vvL~ 53 (179)
T COG2042 16 IYHAGQCDPKKCTGKKLERFGLARLLRVGGKFPG------------------------------------------VVLT 53 (179)
T ss_pred EEecCCCChhhhhHHHHHhcchhhhhcccCccce------------------------------------------eEEC
Confidence 7999999999999999999999999998888777 9999
Q ss_pred CCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCChH
Q psy4652 81 PVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPK 160 (291)
Q Consensus 81 P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~~ 160 (291)
|.|.+.|||+|++++++.||+||||||++++++ |.++++.++|+||||||||||||||||+||||||+||||||+||++
T Consensus 54 P~ae~~lSp~D~~iver~Gi~vvdcSW~~~~~~-f~~l~~~~~R~LP~LvAaNPVNYGkp~kLss~EAlaAaLYI~G~~d 132 (179)
T COG2042 54 PFAEKALSPADRDIVERFGITVVDCSWNRVERV-FKKLRGREHRRLPFLVAANPVNYGKPFKLSSAEALAAALYIVGFKD 132 (179)
T ss_pred CCcccccChhhHHHHHhcCeEEEEccHHHHHHH-HHhcCccccccccHhhhcCCcccCCcchhchHHHHHHHHHHhCcHH
Confidence 999999999999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCcHHHH
Q psy4652 161 EAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV 240 (291)
Q Consensus 161 ~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~~Ev~ 240 (291)
+|..+|++|+|||+||+|| +|+||+|++|+++.||+
T Consensus 133 eA~~lls~F~WG~~FleLN--------------------------------------------~e~Le~Y~~a~~s~eVv 168 (179)
T COG2042 133 EASELLSKFKWGHTFLELN--------------------------------------------KELLEEYSNAEDSAEVV 168 (179)
T ss_pred HHHHHHhhCcccHHHHHHh--------------------------------------------HHHHHHHHhccchHHHH
Confidence 9999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHH
Q psy4652 241 KVQNEYLKKI 250 (291)
Q Consensus 241 ~iq~eyl~~~ 250 (291)
+||++|+++.
T Consensus 169 eiq~~~l~~~ 178 (179)
T COG2042 169 EIQEEYLEKG 178 (179)
T ss_pred HHHHHHHhcc
Confidence 9999999874
No 3
>PRK02287 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-70 Score=476.54 Aligned_cols=164 Identities=46% Similarity=0.809 Sum_probs=156.5
Q ss_pred CCCCCCCCCCCcchhhhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeC
Q psy4652 1 MWDMKHCDPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLT 80 (291)
Q Consensus 1 m~d~~~cDpkkcsg~kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~ 80 (291)
||||+||||||||||||.|++.|+.+.....+.+ ++||||
T Consensus 6 ~~~~~qcDPKkCTg~KL~r~g~~~~~~~~~~~~~----------------------------------------g~IvL~ 45 (171)
T PRK02287 6 VYHANQDDPKKCTARKLVRFGLARLVRSIRKIPR----------------------------------------GSIVLN 45 (171)
T ss_pred EEeCCCCCcccchHHHHHhCCceeEecccccCCC----------------------------------------CeEEEC
Confidence 8999999999999999999999999988777754 359999
Q ss_pred CCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCChH
Q psy4652 81 PVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPK 160 (291)
Q Consensus 81 P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~~ 160 (291)
|+|+++|||+|+++++++|++||||||++++++||.+++ +++|+||||||||||||||||+||||||+||||||+|+++
T Consensus 46 P~a~~~lSp~D~~~~~~~Gi~vlDcSW~~~~~~~~~~~~-~~~R~LP~LvAaNPvNYGkp~kLs~vEAlAaaLyI~G~~~ 124 (171)
T PRK02287 46 PFAEKALSPADRDIVEKRGIVALDCSWNEAERVFFKLLR-GHHRRLPFLVAANPVNYGKPFKLSSVEALAAALYILGFKE 124 (171)
T ss_pred CCCCcCcCHHHHHhhhhCCEEEEECCHHHHhhhhhhccC-CCcccCccccccCCCcCCCcccccHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999998874 5699999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCcHHHH
Q psy4652 161 EAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVV 240 (291)
Q Consensus 161 ~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~~Ev~ 240 (291)
+|..+|++|+|||+|++|| +|+||+|++|+|++||+
T Consensus 125 ~A~~ll~~F~WG~~Fl~lN--------------------------------------------~elLe~Y~~~~~~~ev~ 160 (171)
T PRK02287 125 EAEKILSKFKWGHTFLELN--------------------------------------------KEPLEAYARAKDSEEIV 160 (171)
T ss_pred HHHHHHhhCCChHHHHHHH--------------------------------------------HHHHHHHHccCCHHHHH
Confidence 9999999999999999999 89999999999999999
Q ss_pred HHHHHHHHH
Q psy4652 241 KVQNEYLKK 249 (291)
Q Consensus 241 ~iq~eyl~~ 249 (291)
++|++|+++
T Consensus 161 ~~q~~~~~~ 169 (171)
T PRK02287 161 EIQKEYLGK 169 (171)
T ss_pred HHHHHHHhh
Confidence 999999975
No 4
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=100.00 E-value=8.1e-63 Score=413.49 Aligned_cols=127 Identities=55% Similarity=1.072 Sum_probs=124.8
Q ss_pred EEeCCCCCcccCccchHHHHhcCeEEEecCcccccccccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHc
Q psy4652 77 ICLTPVGVQCVSKADHDIIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIA 156 (291)
Q Consensus 77 i~l~P~~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~ 156 (291)
|||||+|+++|||+||++|+++|++||||||++++++ |.+|+.+|+|+|||||||||||||||||||||||+||||||+
T Consensus 1 ivLsP~~~~~lSp~Dr~iv~~~Gi~viDCSW~~l~~~-f~k~~~~~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~ 79 (127)
T PF04034_consen 1 IVLSPFATKYLSPADREIVEKSGIAVIDCSWNRLDEV-FKKLRSRNHRLLPYLVAANPVNYGKPCKLSCVEALAAALYIL 79 (127)
T ss_pred CeeCCCCCcccCHHHHHHHHHCCEEEEECcHHHHHHH-HHhcCCCCCccCchhhccCCcccCCcccccHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCc
Q psy4652 157 GFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTS 236 (291)
Q Consensus 157 g~~~~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~ 236 (291)
||+++|..+|++||||++|++|| +|+||+|++|+|+
T Consensus 80 G~~~~A~~lL~~FkWG~~F~~LN--------------------------------------------~elLe~Y~~~~~~ 115 (127)
T PF04034_consen 80 GFKEQAEELLSKFKWGHTFLELN--------------------------------------------KELLEAYAKCKTS 115 (127)
T ss_pred CCHHHHHHHHhcCCCcHHHHHHH--------------------------------------------HHHHHHHHcCCCH
Confidence 99999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4652 237 TDVVKVQNEYLK 248 (291)
Q Consensus 237 ~Ev~~iq~eyl~ 248 (291)
+||+++|++|++
T Consensus 116 ~ev~~~q~~~le 127 (127)
T PF04034_consen 116 EEVIEIQNEYLE 127 (127)
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
No 5
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=99.88 E-value=1.9e-23 Score=176.07 Aligned_cols=59 Identities=37% Similarity=0.609 Sum_probs=57.8
Q ss_pred hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652 16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL 74 (291)
Q Consensus 16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~ 74 (291)
|++|||||||+||+|||+|++++|+.||++||||++|++||+|+|++|++|+|++||+.
T Consensus 62 kP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~ 120 (127)
T PF04034_consen 62 KPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIE 120 (127)
T ss_pred CcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999975
No 6
>KOG3154|consensus
Probab=99.85 E-value=4e-22 Score=182.28 Aligned_cols=59 Identities=41% Similarity=0.666 Sum_probs=57.6
Q ss_pred hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652 16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL 74 (291)
Q Consensus 16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~ 74 (291)
|+|||||||||||++|||||+++|+.||++|+|||+||+||++|||.|++|.+++||+.
T Consensus 143 rP~rLnCvEAlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~ 201 (263)
T KOG3154|consen 143 RPWRLNCVEALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVE 201 (263)
T ss_pred CCceecHHHHHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999975
No 7
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.1e-21 Score=172.71 Aligned_cols=59 Identities=36% Similarity=0.504 Sum_probs=57.5
Q ss_pred hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652 16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL 74 (291)
Q Consensus 16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~ 74 (291)
|+||||||||+||||||+||+++|.+||++|+|||+|++||+|+||+|+.|+++.||+.
T Consensus 111 kp~kLss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVve 169 (179)
T COG2042 111 KPFKLSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVVE 169 (179)
T ss_pred CcchhchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999874
No 8
>PRK02287 hypothetical protein; Provisional
Probab=99.83 E-value=1.1e-21 Score=172.06 Aligned_cols=59 Identities=36% Similarity=0.487 Sum_probs=57.8
Q ss_pred hhhhhchHHHHhhcccccCChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhc
Q psy4652 16 KLARHNLIKILKLGERFRGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFL 74 (291)
Q Consensus 16 kL~KLnCvEALaa~l~I~G~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~ 74 (291)
|++||||||||||++||+|+.++|+.||++|+||++|++||+|+|++|++|+|++||+.
T Consensus 103 kp~kLs~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~ 161 (171)
T PRK02287 103 KPFKLSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVE 161 (171)
T ss_pred CcccccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999985
No 9
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=98.65 E-value=7.6e-09 Score=70.38 Aligned_cols=28 Identities=46% Similarity=1.144 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCcchhhhhhhchHHHHhh
Q psy4652 1 MWDMKHCDPKKCSGRKLARHNLIKILKL 28 (291)
Q Consensus 1 m~d~~~cDpkkcsg~kL~KLnCvEALaa 28 (291)
|||++|||||||||+||.|++-|+.+..
T Consensus 5 v~d~~~CdPkKCt~~kl~r~~~~~~~r~ 32 (35)
T PF04068_consen 5 VWDFDQCDPKKCTGKKLIRFCPVRIVRT 32 (35)
T ss_dssp EE-CCC--CCCCSS-HHHHH-HH--HHC
T ss_pred EEEcCCCCccccCHHHHHhcCCceeeec
Confidence 7999999999999999999999877653
No 10
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=93.71 E-value=0.051 Score=47.70 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=47.1
Q ss_pred HhcCeEEEecCccccccc----c-cc---cCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCCh-HH-HHHh
Q psy4652 96 QENGAAVVDCSWAKIEET----P-FN---KMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFP-KE-AKFY 165 (291)
Q Consensus 96 ~~~G~~vvdcSW~~~~~~----~-~~---~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~-~~-a~~~ 165 (291)
....+.|||..|++...+ | +. ++.-...+.--|-+--|| ++.-||++||++.+|-.+|-. +. +..+
T Consensus 113 ~~~~lIviDgTW~qA~km~~~~p~l~~lp~v~l~~~~~s~y~lRk~~----~~~~lsT~EAv~~~L~~l~~~~~~~~~~L 188 (203)
T PF03942_consen 113 KPKTLIVIDGTWRQAKKMLRRSPWLQQLPRVSLKPSPPSFYRLRKQP----KEGCLSTLEAVAYALKELEEAPDEVADNL 188 (203)
T ss_pred CceEEEEECCchHHHHHHHhhCccccCCceeeCCCCcccceeeEecC----CCCCEeHHHHHHHHHHHhcchhHHHHHHH
Confidence 345789999999875432 1 01 111112222333444444 678899999999999999999 54 8888
Q ss_pred hccCCC
Q psy4652 166 LDKFKW 171 (291)
Q Consensus 166 l~~fkw 171 (291)
|+-|+.
T Consensus 189 l~~f~~ 194 (203)
T PF03942_consen 189 LDAFDA 194 (203)
T ss_pred HHHHHH
Confidence 877754
No 11
>KOG2409|consensus
Probab=49.85 E-value=8.2 Score=40.82 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=28.0
Q ss_pred hhhhhcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q psy4652 218 TFLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEEE 253 (291)
Q Consensus 218 ~Fl~lN~ELLE~Ya~c~~~~Ev~~iq~eyl~~~~~~ 253 (291)
+|. +|.....+|.--+..+++..+...|.+....+
T Consensus 20 ~~~-in~~yAk~~~~~kk~E~lQk~~~k~~e~~~s~ 54 (647)
T KOG2409|consen 20 QFK-INKDYAKRYAHNKKREELQKYEDKYGEASKSE 54 (647)
T ss_pred ccc-hhhhHHHHHHHHHhHHHHHHHHhhhccchhcc
Confidence 444 89999999999999999988888887765443
No 12
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=47.98 E-value=20 Score=31.25 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=46.7
Q ss_pred HHHhcCeEEEecCccccccc-ccccCCCCCCCcCcch-hhcCCCCCCCCCcccHHHHHHhHHHHcCC-hHH--HHHhhcc
Q psy4652 94 IIQENGAAVVDCSWAKIEET-PFNKMKTNHPRLLPFL-IAANPINYGKPCKLSCVEALAATFIIAGF-PKE--AKFYLDK 168 (291)
Q Consensus 94 ~i~~~G~~vvdcSW~~~~~~-~~~~~~~~~~R~LP~L-iAaNpvnygkp~kLs~vEAlaa~l~i~g~-~~~--a~~~l~~ 168 (291)
.+...|+.||+++|..-+.. ........+--.+|+- ||..- .|+|. .|.| +++|.+..+|+ +-+ -+.+-+.
T Consensus 86 ~l~~~g~iiins~~~~~~~~~~~~~~~~~~~~~i~a~~iA~e~--~g~~~-~N~v-~lGa~~~l~g~~~~e~l~~~i~~~ 161 (186)
T PRK05844 86 NEKEDTKYIITTHLSKEELIEKKPELKGKKVFLVDCIKISMET--IGRPI-PNTP-MLGALMKVSGMLEIDAFKEAFKKV 161 (186)
T ss_pred CcCCCeEEEEECCCCHHHHHHhchhcccCeEEEEeHHHHHHHH--cCCCc-hhHH-HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35677888899887431100 0000000011123332 22221 36774 3665 77888888897 555 3445566
Q ss_pred C--CCCcchhhhcHHHHHH
Q psy4652 169 F--KWGRTFLTLNEELLDL 185 (291)
Q Consensus 169 f--kwG~~FleLN~elLe~ 185 (291)
| |-+..+.+.|.+.++.
T Consensus 162 ~~~k~~~~~~e~N~~A~~~ 180 (186)
T PRK05844 162 LGKKLPQKVIDANMLAIQR 180 (186)
T ss_pred HhhhcCcHHHHHHHHHHHH
Confidence 6 2346799999666654
No 13
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=42.77 E-value=8.7 Score=36.00 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=13.2
Q ss_pred hhhhhhhhHHHHHHhcCC
Q psy4652 274 EEEEEEEDKAIEDELGRI 291 (291)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ 291 (291)
++++++++.+|..||.+|
T Consensus 141 ~~ddeDd~~~Ll~ELekI 158 (244)
T PF04889_consen 141 DDDDEDDTAALLRELEKI 158 (244)
T ss_pred ccccchHHHHHHHHHHHH
Confidence 456667778888888765
No 14
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=42.70 E-value=18 Score=28.54 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.6
Q ss_pred CcccHHHHHHhHHHHcCChHHHHHhhccC
Q psy4652 141 CKLSCVEALAATFIIAGFPKEAKFYLDKF 169 (291)
Q Consensus 141 ~kLs~vEAlaa~l~i~g~~~~a~~~l~~f 169 (291)
..=+++||+.+|+|+-+-.+.|..++..+
T Consensus 95 ~~ad~~eAliGAiyld~g~~~~~~~i~~~ 123 (133)
T cd00593 95 ILADVFEALIGAIYLDGGFEAARKFLLRL 123 (133)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34578999999999999889999988765
No 15
>KOG4032|consensus
Probab=41.96 E-value=19 Score=33.07 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=14.9
Q ss_pred hhcHHHHHHhhhhcccccccc
Q psy4652 177 TLNEELLDLYKECDTIFYEDL 197 (291)
Q Consensus 177 eLN~elLe~Y~a~~si~ye~l 197 (291)
.+-+.|+..|..|-.-||+.+
T Consensus 89 ~ia~~L~n~f~~~~~~N~~~i 109 (184)
T KOG4032|consen 89 EIAQLLLNLFHDIQNGNYAII 109 (184)
T ss_pred HHHHHHHHHHHHHHcccHHHH
Confidence 444567778888888887655
No 16
>smart00535 RIBOc Ribonuclease III family.
Probab=38.91 E-value=23 Score=28.12 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.2
Q ss_pred cccHHHHHHhHHHHcCChHHHHHhhcc
Q psy4652 142 KLSCVEALAATFIIAGFPKEAKFYLDK 168 (291)
Q Consensus 142 kLs~vEAlaa~l~i~g~~~~a~~~l~~ 168 (291)
.=+++||+.+|+|+-+=.+.|.+++.+
T Consensus 94 ~a~~~eAliGAi~ld~g~~~~~~~i~~ 120 (129)
T smart00535 94 LADVFEALIGAIYLDSGLEAAREFIRD 120 (129)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 346899999999999877888887654
No 17
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=38.39 E-value=34 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCCCcccHHHHHHhHHH--HcCC-hHHHHHhhc-cCCCCcchhhhcHHHHHH
Q psy4652 137 YGKPCKLSCVEALAATFI--IAGF-PKEAKFYLD-KFKWGRTFLTLNEELLDL 185 (291)
Q Consensus 137 ygkp~kLs~vEAlaa~l~--i~g~-~~~a~~~l~-~fkwG~~FleLN~elLe~ 185 (291)
+|.|...|.+ +++|.+. ++|+ .+..+..|. .| |..+.++|.+.++.
T Consensus 138 ~g~~~~~N~v-~lGa~~~~~~l~i~~e~~~~ai~~~~--~~~~ve~N~~A~~~ 187 (197)
T PRK06274 138 IGNPRSLNVI-MLGAAFGAGLLPLSKESVLETIEAEL--PEKLREINLAAFEL 187 (197)
T ss_pred cCChHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHc--CchhHHHHHHHHHH
Confidence 5777655554 4455545 5565 366777775 57 78899999666654
No 18
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=36.56 E-value=24 Score=36.02 Aligned_cols=55 Identities=20% Similarity=0.390 Sum_probs=35.0
Q ss_pred HHHHhcCeEEEec------------------CcccccccccccCCCCCCCcCcchhhcCCCCC--CCCCcccHHHHHHh
Q psy4652 93 DIIQENGAAVVDC------------------SWAKIEETPFNKMKTNHPRLLPFLIAANPINY--GKPCKLSCVEALAA 151 (291)
Q Consensus 93 ~~i~~~G~~vvdc------------------SW~~~~~~~~~~~~~~~~R~LP~LiAaNpvny--gkp~kLs~vEAlaa 151 (291)
..|+..|+..||| +..+++. .++..+.+..|++.+.||+|. |.|+.+.-+.++..
T Consensus 124 ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~----aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~e 198 (450)
T TIGR02618 124 YHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQK----LIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRE 198 (450)
T ss_pred HHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHH----HhccccCcccCceEEEEecccCCCeeCCHHHHHHHHH
Confidence 3467789999999 2223322 122233445688999999994 79977655555543
No 19
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=36.36 E-value=31 Score=25.61 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCCCCCCCCcccHHHHHHhHHHHcCChHHHHHhhccCCCCcchhhhc
Q psy4652 133 NPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFKWGRTFLTLN 179 (291)
Q Consensus 133 Npvnygkp~kLs~vEAlaa~l~i~g~~~~a~~~l~~fkwG~~FleLN 179 (291)
||-++ ....+-..|++|+...+++....+-. .-|++|.+.+..+
T Consensus 4 n~~~~-~~~~~r~~E~~a~G~~vi~~~~~~~~--~~~~~~~~~~~~~ 47 (92)
T PF13524_consen 4 NPSRS-DGPNMRIFEAMACGTPVISDDSPGLR--EIFEDGEHIITYN 47 (92)
T ss_pred eCCCC-CCCchHHHHHHHCCCeEEECChHHHH--HHcCCCCeEEEEC
Confidence 66555 44667899999998888887663333 3499997776665
No 20
>KOG3988|consensus
Probab=31.51 E-value=22 Score=35.40 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=19.0
Q ss_pred CcchhHHHhhHHHHHHHhhccchhh
Q psy4652 47 KWGRTFLTLNEELLDLYKACDTVLF 71 (291)
Q Consensus 47 ~WG~~F~~iN~elLd~Y~~C~~~~e 71 (291)
++-.-|-+-|+++=--|.+|.+.-.
T Consensus 208 syr~c~tkWN~aie~M~~QC~~vg~ 232 (378)
T KOG3988|consen 208 SYRQCMTKWNQAIEVMYFQCMEVGK 232 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455677788999999999988654
No 21
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=29.91 E-value=31 Score=22.46 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=12.6
Q ss_pred EEEecCccccccccc
Q psy4652 101 AVVDCSWAKIEETPF 115 (291)
Q Consensus 101 ~vvdcSW~~~~~~~~ 115 (291)
.+||||+..+.++|-
T Consensus 11 ~~V~C~~~~L~~vP~ 25 (33)
T smart00013 11 TAVDCSGRGLTEVPL 25 (33)
T ss_pred CEeEeCCCCcCccCC
Confidence 479999999988774
No 22
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.02 E-value=1.8e+02 Score=29.22 Aligned_cols=68 Identities=18% Similarity=0.058 Sum_probs=41.4
Q ss_pred HHhHHHHcCChHHHHHhhccCCCCcchhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHh-hccCCCchhh
Q psy4652 149 LAATFIIAGFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYL-DKFKWGRTFL 220 (291)
Q Consensus 149 laa~l~i~g~~~~a~~~l~~fkwG~~FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL-~kFkWG~~Fl 220 (291)
+.|.|.+-|.+.-+.++=.. -.+...|- +.|+..-....++|-+|.....-+.|++.| ..|+=..+|-
T Consensus 277 ~~a~l~~rgL~Tl~lR~~r~---~~Na~~la-~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~ 345 (432)
T PRK06702 277 FNAYISNIGLETLHLRMERH---SENALAVA-KWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFG 345 (432)
T ss_pred HHHHHHHhccCcHHHHHHHH---HHHHHHHH-HHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEE
Confidence 44556666666544444332 14445555 556666667778888887777777888887 5455555554
No 23
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=26.84 E-value=87 Score=28.21 Aligned_cols=77 Identities=18% Similarity=0.395 Sum_probs=53.1
Q ss_pred hcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeCCCCCcccCccchHHHHhcCeEE-EecCcccccccccccCCCC
Q psy4652 43 LDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAV-VDCSWAKIEETPFNKMKTN 121 (291)
Q Consensus 43 L~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~P~~~~~vs~~D~~~i~~~G~~v-vdcSW~~~~~~~~~~~~~~ 121 (291)
.++.||. .|-++-.++|+...... ..|++.=|-.+++++-|..+.++|+.| +|++|..+ ..+++
T Consensus 49 F~~~GE~-~FR~~E~~vl~~l~~~~--------~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l----~~Rl~-- 113 (172)
T COG0703 49 FEEEGEE-GFRRLETEVLKELLEED--------NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETL----YERLQ-- 113 (172)
T ss_pred HHHHhHH-HHHHHHHHHHHHHhhcC--------CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHH----HHHhc--
Confidence 3444443 45566666666655544 288999999999999999999998765 48888654 33433
Q ss_pred CCCcCcchhhcCC
Q psy4652 122 HPRLLPFLIAANP 134 (291)
Q Consensus 122 ~~R~LP~LiAaNp 134 (291)
+.+-.|.|...+|
T Consensus 114 ~~~~RPll~~~~~ 126 (172)
T COG0703 114 RDRKRPLLQTEDP 126 (172)
T ss_pred cccCCCcccCCCh
Confidence 5666677776655
No 24
>PF09361 Phasin_2: Phasin protein; InterPro: IPR018968 Phasins (or granule-associate proteins) are surface proteins found covering Polyhydroxyalkanoate (PHA) storage granules in bacteria. Polyhydroxyalkanoates are linear polyesters produced by bacterial fermentation of sugar or lipids for the purpose of storing carbon and energy, and are accumulated as intracellular granules by many bacteria under unfavorable conditions, enhancing their fitness and stress resistance []. The layer of phasins stabilises the granules and prevents coalescence of separated granules in the cytoplasm and nonspecific binding of other proteins to the hydrophobic surfaces of the granules. For example, in Ralstonia eutropha (strain ATCC 17699/H16/DSM 428/Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)), the major surface protein of polyhydroxybutyrate (PHB) granules is phasin PhaP1(Reu), which occurs along with three homologues (PhaP2, PhaP3, and PhaP4) that have the capacity to bind to PHB granules but are present at minor levels [, ]. These four phasins lack a highly conserved domain but share homologous hydrophobic regions. This entry describes a group of phasins that associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB).
Probab=25.58 E-value=2.1e+02 Score=21.27 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred hhhhcHHHHHHhhhhcccccccccCCCcHHHHHHHhhccCCCchhhhhcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q psy4652 175 FLTLNEELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEEE 253 (291)
Q Consensus 175 FleLN~elLe~Y~a~~si~ye~l~~~~f~eqA~~lL~kFkWG~~Fl~lN~ELLE~Ya~c~~~~Ev~~iq~eyl~~~~~~ 253 (291)
|....++.++.+.....+..+ |+.+-+...|+- .+..+.-+-+.++.=..|++..|+..+|.+|++..-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~a~~~~e~~~~Q~~~~~~~~e~ 74 (102)
T PF09361_consen 4 FSEAQQKNLEAFQALAEAALE-----GAEALAALNLEA---ARQNVEEAFAQAQQLASAKDPQELVALQSEFAQEQFER 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 444555556666666555442 223333222221 12223334566777789999999999999999886554
No 25
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=24.77 E-value=35 Score=25.16 Aligned_cols=10 Identities=40% Similarity=0.962 Sum_probs=7.4
Q ss_pred hhcCCCCCCC
Q psy4652 130 IAANPINYGK 139 (291)
Q Consensus 130 iAaNpvnygk 139 (291)
...||+|||-
T Consensus 40 yl~dP~~ygt 49 (50)
T PF11427_consen 40 YLKDPVNYGT 49 (50)
T ss_dssp HHHSCCCTT-
T ss_pred HhcChhhccC
Confidence 3579999994
No 26
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=24.64 E-value=2.1e+02 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=12.7
Q ss_pred HHHHhHHHHcCChHHHHHhhcc
Q psy4652 147 EALAATFIIAGFPKEAKFYLDK 168 (291)
Q Consensus 147 EAlaa~l~i~g~~~~a~~~l~~ 168 (291)
++.|-.+.--|-+..|..+|.+
T Consensus 54 ~~~Ak~~~~~~kk~~Al~~Lkr 75 (191)
T PTZ00446 54 EIEAKQKVEQNQMSNAKILLKR 75 (191)
T ss_pred HHHHHHHHHcccHHHHHHHHHH
Confidence 3445555556666666666654
No 27
>COG4402 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.51 E-value=32 Score=34.82 Aligned_cols=16 Identities=56% Similarity=1.236 Sum_probs=14.4
Q ss_pred CCCCCCCCCCcchhhhhh
Q psy4652 2 WDMKHCDPKKCSGRKLAR 19 (291)
Q Consensus 2 ~d~~~cDpkkcsg~kL~K 19 (291)
|||+.||| ||+..|.+
T Consensus 313 wDMgScdp--cs~DPL~p 328 (457)
T COG4402 313 WDMGSCDP--CSRDPLLP 328 (457)
T ss_pred ccccCCCc--ccCCCCCH
Confidence 99999999 99988765
No 28
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=22.33 E-value=74 Score=27.53 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHHhcCeEEEecCcccccccccccCCCCCCCcCcch-hhcCCCCCCCCCcccHHHHHHhHHHHcC-ChHHH-HHhh-ccC
Q psy4652 94 IIQENGAAVVDCSWAKIEETPFNKMKTNHPRLLPFL-IAANPINYGKPCKLSCVEALAATFIIAG-FPKEA-KFYL-DKF 169 (291)
Q Consensus 94 ~i~~~G~~vvdcSW~~~~~~~~~~~~~~~~R~LP~L-iAaNpvnygkp~kLs~vEAlaa~l~i~g-~~~~a-~~~l-~~f 169 (291)
.+...|+.|+|.++..-+ +..+.+ ..---+|+- +|..- -|.|.. |.+ +++|.+..+| ++.++ +..+ ++|
T Consensus 86 ~l~~gg~vi~ns~~~~~~--~~~~~~-~~~~~vp~~~iA~~~--~g~~~~-N~v-~lGa~~~l~~~~~~e~l~~~i~~~f 158 (181)
T PRK08534 86 GLKKDGIIIINTTKDPED--LKYDTK-AKVYTIDATKIALDV--LGVPIV-NTT-MLGAFAGATGEVSLESLKKAILERF 158 (181)
T ss_pred CcCCCcEEEEECCCChHH--HhhhcC-CEEEEEeHHHHHHHH--cCCcch-hHH-HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 367889999998765211 111100 011113331 12111 255654 665 7777777788 66544 3333 445
Q ss_pred CCCcchhhhcHHHHHH
Q psy4652 170 KWGRTFLTLNEELLDL 185 (291)
Q Consensus 170 kwG~~FleLN~elLe~ 185 (291)
++.+.+.|.+.++.
T Consensus 159 --~~k~~e~N~~A~~~ 172 (181)
T PRK08534 159 --PGKLGEKNAEAVEK 172 (181)
T ss_pred --chHHHHHHHHHHHH
Confidence 33399999666553
Done!