Query psy4652
Match_columns 291
No_of_seqs 156 out of 432
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 22:18:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 33.3 44 0.0015 27.9 4.3 30 222-253 122-151 (169)
2 3t7k_A RTT107, regulator of TY 26.9 40 0.0014 31.1 3.1 49 35-104 4-52 (256)
3 2ca6_A RAN GTPase-activating p 24.7 16 0.00053 32.1 0.0 12 99-110 160-171 (386)
4 2ca6_A RAN GTPase-activating p 22.4 17 0.0006 31.8 -0.1 12 99-110 188-199 (386)
5 3dxi_A Putative aldolase; TIM 21.0 97 0.0033 28.5 4.5 41 205-245 257-306 (320)
6 3utn_X Thiosulfate sulfurtrans 18.1 44 0.0015 30.7 1.5 73 85-161 28-113 (327)
7 3o2r_A Ribonuclease III; struc 15.7 49 0.0017 27.7 1.1 25 144-168 137-161 (170)
8 2gsl_A Hypothetical protein; a 15.7 82 0.0028 26.0 2.5 25 144-168 100-124 (137)
9 1ihn_A Hypothetical protein MT 14.5 40 0.0014 26.8 0.3 40 48-100 7-62 (113)
10 1qwg_A PSL synthase;, (2R)-pho 13.9 53 0.0018 30.0 0.9 58 44-110 42-109 (251)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=33.31 E-value=44 Score=27.91 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=20.6
Q ss_pred hcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q psy4652 222 LNEELLDLYKECDTSTDVVKVQNEYLKKIEEE 253 (291)
Q Consensus 222 lN~ELLE~Ya~c~~~~Ev~~iq~eyl~~~~~~ 253 (291)
+|.+..+.|.. +.++-.+..++|.++....
T Consensus 122 ~n~~aa~~~~~--d~~~y~~~~r~~~~~~a~~ 151 (169)
T 1ayz_A 122 ANVEAATLFKD--HKSQYVKRVKETVEKSWED 151 (169)
T ss_dssp SSHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CHHHHHHHHHHHHHHHcCC
Confidence 56777777753 5677777777777776654
No 2
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=26.94 E-value=40 Score=31.06 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=36.4
Q ss_pred ChhhHHHHhcccCcchhHHHhhHHHHHHHhhccchhhhhcceEEeCCCCCcccCccchHHHHhcCeEEEe
Q psy4652 35 FPKEAKFYLDKFKWGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVD 104 (291)
Q Consensus 35 ~~~~A~~lL~~F~WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~P~~~~~vs~~D~~~i~~~G~~vvd 104 (291)
++.+|.++|++|-= .+=+.|+.|+|=.-..-++..|+..++.-||.||+
T Consensus 4 ~~~~a~~il~~~~~---------------------~~~~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~ 52 (256)
T 3t7k_A 4 HMTKAEKILARFNE---------------------LPNYDLKAVCTGCFHDGFNEVDIEILNQLGIKIFD 52 (256)
T ss_dssp ---CHHHHHHTCSC---------------------CCCCCEEEEESSSCSSCCCHHHHHHHHHTTEEECS
T ss_pred hHHHHHHHHHhccc---------------------CCCeeEEEEecCCcccccCHHHHHHHHHcCeEEEe
Confidence 57788888887642 22267889998777347999999999999999984
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=24.75 E-value=16 Score=32.14 Aligned_cols=12 Identities=8% Similarity=0.291 Sum_probs=5.4
Q ss_pred CeEEEecCcccc
Q psy4652 99 GAAVVDCSWAKI 110 (291)
Q Consensus 99 G~~vvdcSW~~~ 110 (291)
.+..+|+|++++
T Consensus 160 ~L~~L~L~~n~l 171 (386)
T 2ca6_A 160 PLRSIICGRNRL 171 (386)
T ss_dssp CCCEEECCSSCC
T ss_pred CCcEEECCCCCC
Confidence 344444444444
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=22.43 E-value=17 Score=31.80 Aligned_cols=12 Identities=17% Similarity=-0.122 Sum_probs=5.0
Q ss_pred CeEEEecCcccc
Q psy4652 99 GAAVVDCSWAKI 110 (291)
Q Consensus 99 G~~vvdcSW~~~ 110 (291)
.+..+++|++++
T Consensus 188 ~L~~L~L~~n~l 199 (386)
T 2ca6_A 188 LLHTVKMVQNGI 199 (386)
T ss_dssp TCCEEECCSSCC
T ss_pred CcCEEECcCCCC
Confidence 344444444443
No 5
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=20.95 E-value=97 Score=28.48 Aligned_cols=41 Identities=10% Similarity=0.264 Sum_probs=22.6
Q ss_pred HHHHHhhccCCC-------chhhhhcHHHHHHHhcCC--CcHHHHHHHHH
Q psy4652 205 EAKFYLDKFKWG-------RTFLTLNEELLDLYKECD--TSTDVVKVQNE 245 (291)
Q Consensus 205 qA~~lL~kFkWG-------~~Fl~lN~ELLE~Ya~c~--~~~Ev~~iq~e 245 (291)
....++.++.|| .+|.-+|+.....+..-. +.++|+++.+.
T Consensus 257 ~~~~~~~~~~~g~~~~~~~sg~~g~H~~~i~~~~~~~~~s~~~i~~~~~~ 306 (320)
T 3dxi_A 257 TFTPLLEKYQWGTNLPYMLSGANNIPQKEVMDWVTNRVYSFNSIIRALDN 306 (320)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHTTCCHHHHHHHHC---CCHHHHHHTC--
T ss_pred HHHHHHHhcCCCCchhhHHHhccCCCHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 344556677777 345566777776664433 56666665443
No 6
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=18.15 E-value=44 Score=30.75 Aligned_cols=73 Identities=12% Similarity=0.219 Sum_probs=39.2
Q ss_pred cccCccch-HHHHhcC---eEEEecCcccccccc------c-cc--CCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHh
Q psy4652 85 QCVSKADH-DIIQENG---AAVVDCSWAKIEETP------F-NK--MKTNHPRLLPFLIAANPINYGKPCKLSCVEALAA 151 (291)
Q Consensus 85 ~~vs~~D~-~~i~~~G---~~vvdcSW~~~~~~~------~-~~--~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa 151 (291)
+.|||+.. +.+.+.. +.+|||||-- ...+ | .+ |+ ..+.+.+=--+.|-. +-|-.|-..|.++.
T Consensus 28 ~LIsp~~l~~ll~~~~~~rvv~lDasw~l-P~~~r~~~~E~~~~~HIP--GAv~~Dld~~~d~~~-~~ph~LP~~~~f~~ 103 (327)
T 3utn_X 28 DLISPKAFVKLVASEKVHRIVPVDATWYL-PSWKLDNKVDFLTKPRIP--NSIFFDIDAISDKKS-PYPHMFPTKKVFDD 103 (327)
T ss_dssp EEECHHHHHHHHHHCSSSCEEEEECCCCC-GGGCCCHHHHHHHSCBCT--TCEECCTTTSSCTTS-SSTTCCCCHHHHHH
T ss_pred cccCHHHHHHHHhCCCCCcEEEEEecCCC-CCCCCCHHHHHHhhCcCC--CCeeeChHHhcCCCC-CCCCCCcCHHHHHH
Confidence 46787654 4554443 7889999931 0000 1 11 11 122222111122222 34788999999999
Q ss_pred HHHHcCChHH
Q psy4652 152 TFIIAGFPKE 161 (291)
Q Consensus 152 ~l~i~g~~~~ 161 (291)
.+--+|....
T Consensus 104 ~l~~lGI~~d 113 (327)
T 3utn_X 104 AMSNLGVQKD 113 (327)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHcCCCCC
Confidence 9987776543
No 7
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=15.73 E-value=49 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=20.1
Q ss_pred cHHHHHHhHHHHcCChHHHHHhhcc
Q psy4652 144 SCVEALAATFIIAGFPKEAKFYLDK 168 (291)
Q Consensus 144 s~vEAlaa~l~i~g~~~~a~~~l~~ 168 (291)
+++||+.+|+|+-|=.+.|+.++.+
T Consensus 137 d~fEAliGAiylD~G~~~a~~~i~~ 161 (170)
T 3o2r_A 137 DALEAIIGAIHLEAGFEFAKTIALR 161 (170)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 6899999999998666778777643
No 8
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=15.72 E-value=82 Score=26.01 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.7
Q ss_pred cHHHHHHhHHHHcCChHHHHHhhcc
Q psy4652 144 SCVEALAATFIIAGFPKEAKFYLDK 168 (291)
Q Consensus 144 s~vEAlaa~l~i~g~~~~a~~~l~~ 168 (291)
+..|||.++||+.|-.+.++.++.+
T Consensus 100 t~fEALiGaLYLd~~~erl~~ll~~ 124 (137)
T 2gsl_A 100 TALEAIIGAMYLLKKEEEIKKIINI 124 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4789999999999988888888764
No 9
>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1
Probab=14.49 E-value=40 Score=26.79 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=26.1
Q ss_pred cchhHHHhhHHHHHHHhhccchhhhhcceEEeCCCCCc----------------ccCccchHHHHhcCe
Q psy4652 48 WGRTFLTLNEELLDLYKACDTVLFIFLMRICLTPVGVQ----------------CVSKADHDIIQENGA 100 (291)
Q Consensus 48 WG~~F~~iN~elLd~Y~~C~~~~ev~~~~i~l~P~~~~----------------~vs~~D~~~i~~~G~ 100 (291)
||..+++||. ......|++.|.|.. .|+++|.+.+.+.++
T Consensus 7 yg~G~~~i~g-------------~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~ll~~~~ 62 (113)
T 1ihn_A 7 CRFGSVTYRG-------------REYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKP 62 (113)
T ss_dssp EETTEEEETT-------------EEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHHHHTTCC
T ss_pred EcCCEEEECC-------------EEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHHHHhcCC
Confidence 5556777774 345567999998872 356677766665543
No 10
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=13.93 E-value=53 Score=30.01 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=35.2
Q ss_pred cccCcchhHHHh---hHHHHHHHhhccchhhhhcceEEeCCCCC---cccCc----cchHHHHhcCeEEEecCcccc
Q psy4652 44 DKFKWGRTFLTL---NEELLDLYKACDTVLFIFLMRICLTPVGV---QCVSK----ADHDIIQENGAAVVDCSWAKI 110 (291)
Q Consensus 44 ~~F~WG~~F~~i---N~elLd~Y~~C~~~~ev~~~~i~l~P~~~---~~vs~----~D~~~i~~~G~~vvdcSW~~~ 110 (291)
=||+||.+.+.= =++.++.|+... |-.+|=|+ .+++. +=.+...+.|..+|.+|=--+
T Consensus 42 lKfg~Gt~~l~~~~~l~eki~l~~~~g---------V~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i 109 (251)
T 1qwg_A 42 VKFGWGTSAVIDRDVVKEKINYYKDWG---------IKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSS 109 (251)
T ss_dssp EEECTTGGGGSCHHHHHHHHHHHHTTT---------CEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSS
T ss_pred EEecCceeeecCHHHHHHHHHHHHHcC---------CeEECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcc
Confidence 389999999844 467788887653 55555552 11111 123455667777777774433
Done!