Query psy4652
Match_columns 291
No_of_seqs 156 out of 432
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 22:18:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4652.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4652hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u61a_ a.149.1.1 (A:) Hypothe 35.9 9.4 0.00069 28.8 2.5 25 144-168 96-120 (127)
2 d1o0wa1 a.149.1.1 (A:-1-167) R 18.5 22 0.0016 27.2 1.6 24 144-167 129-152 (169)
3 d1u61a_ a.149.1.1 (A:) Hypothe 16.3 35 0.0026 25.4 2.4 38 8-45 83-120 (127)
4 d1okga1 c.46.1.2 (A:7-162) 3-m 13.4 50 0.0036 25.4 2.6 81 83-165 6-93 (156)
5 d1kwga2 c.1.8.1 (A:1-393) A4 b 10.3 31 0.0022 26.2 0.3 25 90-114 18-45 (393)
6 d1ycca_ a.3.1.1 (A:) Mitochond 10.2 90 0.0066 22.2 3.0 77 8-95 7-99 (108)
7 d1dxya2 c.23.12.1 (A:1-100,A:3 10.1 2.1E+02 0.015 20.2 5.1 43 54-105 55-97 (131)
8 d2g7ga2 a.121.1.1 (A:74-205) P 8.8 45 0.0033 23.5 0.7 39 120-161 19-57 (132)
9 d1rhsa1 c.46.1.2 (A:1-149) Rho 8.4 1.2E+02 0.0089 22.2 3.2 73 86-159 9-90 (149)
10 d1x9fc_ a.1.1.2 (C:) Extracell 8.1 40 0.0029 24.7 0.1 19 84-110 2-20 (149)
No 1
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=35.91 E-value=9.4 Score=28.77 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=20.8
Q ss_pred cHHHHHHhHHHHcCChHHHHHhhcc
Q psy4652 144 SCVEALAATFIIAGFPKEAKFYLDK 168 (291)
Q Consensus 144 s~vEAlaa~l~i~g~~~~a~~~l~~ 168 (291)
+++|||.+++|+-|=.+..+.++.+
T Consensus 96 d~fEAliGalYLd~~~e~~~~~i~~ 120 (127)
T d1u61a_ 96 TAFEALIGYHHLLNNRERLDEIVYK 120 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7799999999998777777777654
No 2
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.48 E-value=22 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=19.3
Q ss_pred cHHHHHHhHHHHcCChHHHHHhhc
Q psy4652 144 SCVEALAATFIIAGFPKEAKFYLD 167 (291)
Q Consensus 144 s~vEAlaa~l~i~g~~~~a~~~l~ 167 (291)
.++||+.+|+|+-|=.+.|+..+.
T Consensus 129 d~~EAliGAiylD~G~~~~~~~i~ 152 (169)
T d1o0wa1 129 DAFEALLAAIYLDQGYEKIKELFE 152 (169)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999999776677776653
No 3
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=16.32 E-value=35 Score=25.36 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=26.1
Q ss_pred CCCCcchhhhhhhchHHHHhhcccccCChhhHHHHhcc
Q psy4652 8 DPKKCSGRKLARHNLIKILKLGERFRGFPKEAKFYLDK 45 (291)
Q Consensus 8 Dpkkcsg~kL~KLnCvEALaa~l~I~G~~~~A~~lL~~ 45 (291)
.||..+-..=..=+++|||-+++|+-|-.+..++++.+
T Consensus 83 ~~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~i~~ 120 (127)
T d1u61a_ 83 VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 120 (127)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcccchhHHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444433223458899999999998767777777754
No 4
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=13.43 E-value=50 Score=25.40 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=40.6
Q ss_pred CCcccCccchHHHHhcCeEEEecCccccccc----ccccCCCCCCCcCcc--hhhc-CCCCCCCCCcccHHHHHHhHHHH
Q psy4652 83 GVQCVSKADHDIIQENGAAVVDCSWAKIEET----PFNKMKTNHPRLLPF--LIAA-NPINYGKPCKLSCVEALAATFII 155 (291)
Q Consensus 83 ~~~~vs~~D~~~i~~~G~~vvdcSW~~~~~~----~~~~~~~~~~R~LP~--LiAa-Npvnygkp~kLs~vEAlaa~l~i 155 (291)
|+..||++...--. ..+.||||+|.-.+.. -|.+=+-...+.+++ .+.. .|...| |..|-..|.++..|--
T Consensus 6 ~~~lvs~~~L~~~l-~d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~-~~~lP~~~~~~~~l~~ 83 (156)
T d1okga1 6 GKVFLDPSEVADHL-AEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTA-RHPLPPCAEFIDWCMA 83 (156)
T ss_dssp TCCEECHHHHTTCG-GGSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCC-SSCCCCHHHHHHHHHH
T ss_pred CCcEeCHHHHHHhc-CCCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCC-ccccCCHHHHHHHHHh
Confidence 34456664432211 3588999999522111 122211112344443 1222 233333 3557778999998888
Q ss_pred cCChHHHHHh
Q psy4652 156 AGFPKEAKFY 165 (291)
Q Consensus 156 ~g~~~~a~~~ 165 (291)
+|....-.-+
T Consensus 84 lGI~~~~~VV 93 (156)
T d1okga1 84 NGMAGELPVL 93 (156)
T ss_dssp TTCSSSSCEE
T ss_pred ccccCCceEE
Confidence 8766543333
No 5
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=10.32 E-value=31 Score=26.21 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=19.8
Q ss_pred cchHHHHhcCeEEE--ec-Ccccccccc
Q psy4652 90 ADHDIIQENGAAVV--DC-SWAKIEETP 114 (291)
Q Consensus 90 ~D~~~i~~~G~~vv--dc-SW~~~~~~~ 114 (291)
+|.+++++.|+..| .. +|.+|+..|
T Consensus 18 ~D~~~~~~~G~n~vR~~i~~W~~iep~~ 45 (393)
T d1kwga2 18 EDARRMREAGLSHVRIGEFAWALLEPEP 45 (393)
T ss_dssp HHHHHHHHHTCCEEEECTTCHHHHCSBT
T ss_pred HHHHHHHHcCCCEEEecccchhhcCCCC
Confidence 57788899999988 55 899987654
No 6
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.20 E-value=90 Score=22.20 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=45.7
Q ss_pred CCCCcchhhhhhhchHHHHhhcccc------------cCChhhHHHHhcccCcchhHHHh----hHHHHHHHhhccchhh
Q psy4652 8 DPKKCSGRKLARHNLIKILKLGERF------------RGFPKEAKFYLDKFKWGRTFLTL----NEELLDLYKACDTVLF 71 (291)
Q Consensus 8 Dpkkcsg~kL~KLnCvEALaa~l~I------------~G~~~~A~~lL~~F~WG~~F~~i----N~elLd~Y~~C~~~~e 71 (291)
|+.+ |+++|+-+|+ +|-.| .|...........|+|..+.... |.+.|.+|-. +.+.
T Consensus 7 Da~~--G~~lF~~~C~----~CH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~ys~~l~~~~~~W~~~~L~~~l~--~P~~ 78 (108)
T d1ycca_ 7 SAKK--GATLFKTRCL----QCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLT--NPKK 78 (108)
T ss_dssp CHHH--HHHHHHHHTT----TTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHH--CHHH
T ss_pred CHHH--HHHHHHHhCh----hhCcCCCCCCcccccccCCcccCcccccCCcccCHHHhhccccCCHHHHHHHHH--chhc
Confidence 4444 8999998884 33322 13333444455678887775544 7888998864 6677
Q ss_pred hhcceEEeCCCCCcccCccchHHH
Q psy4652 72 IFLMRICLTPVGVQCVSKADHDII 95 (291)
Q Consensus 72 v~~~~i~l~P~~~~~vs~~D~~~i 95 (291)
++.++-. |+. ...++.|++-|
T Consensus 79 ~~pgt~M--~~~-gi~~~~d~~~l 99 (108)
T d1ycca_ 79 YIPGTKM--AFG-GLKKEKDRNDL 99 (108)
T ss_dssp HSTTCCC--CCC-CCCCHHHHHHH
T ss_pred cCCCCCC--CCC-CCCCHHHHHHH
Confidence 7765442 332 23467776544
No 7
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Probab=10.13 E-value=2.1e+02 Score=20.23 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=27.7
Q ss_pred HhhHHHHHHHhhccchhhhhcceEEeCCCCCcccCccchHHHHhcCeEEEec
Q psy4652 54 TLNEELLDLYKACDTVLFIFLMRICLTPVGVQCVSKADHDIIQENGAAVVDC 105 (291)
Q Consensus 54 ~iN~elLd~Y~~C~~~~ev~~~~i~l~P~~~~~vs~~D~~~i~~~G~~vvdc 105 (291)
.+++++|++...++ ++-|...-+|.-.| |.+...++||.|..+
T Consensus 55 ~~~~~vl~~l~~~~------Lk~I~~~~vG~d~I---D~~~a~~~gI~V~n~ 97 (131)
T d1dxya2 55 PYAAGVFEKMHAYG------IKFLTIRNVGTDNI---DMTAMKQYGIRLSNV 97 (131)
T ss_dssp CBCHHHHHHHHHTT------CCEEEESSSCCTTB---CHHHHHHTTCEEECC
T ss_pred CCCHHHHhhcccCC------eEEEEEcccccccc---cccccccceEEEEeC
Confidence 46777777654432 34466666666554 777788888887643
No 8
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=8.80 E-value=45 Score=23.47 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=32.0
Q ss_pred CCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHcCChHH
Q psy4652 120 TNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIAGFPKE 161 (291)
Q Consensus 120 ~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~g~~~~ 161 (291)
..||.++|.++..-|. .|-.|..+|++.++|.=+||..+
T Consensus 19 ~~HP~~~~l~~~~~~~---~p~~l~~~e~~l~~L~~aG~~~~ 57 (132)
T d2g7ga2 19 SRHPTAIRLLATETVR---DPGSLSVYHSAAAGLRGAGFPDD 57 (132)
T ss_dssp HTCGGGHHHHHTSCCC---CHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHCcCHHHHhhcCCCC---ChhHHHHHHHHHHHHHHCCCCHH
Confidence 3688888887765544 47889999999999999999765
No 9
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.38 E-value=1.2e+02 Score=22.20 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=34.6
Q ss_pred ccCccch-HHHHh----cCeEEEecCcccccc----cccccCCCCCCCcCcchhhcCCCCCCCCCcccHHHHHHhHHHHc
Q psy4652 86 CVSKADH-DIIQE----NGAAVVDCSWAKIEE----TPFNKMKTNHPRLLPFLIAANPINYGKPCKLSCVEALAATFIIA 156 (291)
Q Consensus 86 ~vs~~D~-~~i~~----~G~~vvdcSW~~~~~----~~~~~~~~~~~R~LP~LiAaNpvnygkp~kLs~vEAlaa~l~i~ 156 (291)
.||++.. +.|++ .++.||||||.-... ..|.+=+-...+.+|+--...+-.- -+..+-..+.++..|--.
T Consensus 9 lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 87 (149)
T d1rhsa1 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASP-YEVMLPSEAGFADYVGSL 87 (149)
T ss_dssp EECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSS-SSSCCCCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccc-hhhhhhhhHHHHHHHhhh
Confidence 4676554 33432 268999999943211 1133211122344554322222222 233444556666666555
Q ss_pred CCh
Q psy4652 157 GFP 159 (291)
Q Consensus 157 g~~ 159 (291)
|..
T Consensus 88 Gi~ 90 (149)
T d1rhsa1 88 GIS 90 (149)
T ss_dssp TCC
T ss_pred hcc
Confidence 544
No 10
>d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=8.09 E-value=40 Score=24.75 Aligned_cols=19 Identities=37% Similarity=0.884 Sum_probs=0.0
Q ss_pred CcccCccchHHHHhcCeEEEecCcccc
Q psy4652 84 VQCVSKADHDIIQENGAAVVDCSWAKI 110 (291)
Q Consensus 84 ~~~vs~~D~~~i~~~G~~vvdcSW~~~ 110 (291)
..|+|.+|+.+|++ ||+++
T Consensus 2 ~~~~S~~e~~~v~~--------sW~~v 20 (149)
T d1x9fc_ 2 EHCCSEEDHRIVQK--------QWDIL 20 (149)
T ss_dssp CCSSCHHHHHHHHH--------HHHGG
T ss_pred CCCCCHHHHHHHHH--------HHHHH
Done!