RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4652
         (291 letters)



>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide
           transhydrogenase dI component {Rhodospirillum rubrum
           [TaxId: 1085]}
          Length = 194

 Score = 28.6 bits (63), Expect = 0.73
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 76  RICLTPVGVQCVSKADHDIIQENGAAV----VDCSWAKIEETPFNKMKTNHPRLLPFLIA 131
           R+ ++P  V+ +     ++I E GA V     D +      T  +       +       
Sbjct: 15  RVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV 74

Query: 132 ANPINYGKPCKLSCVEALAATFIIAGFPKEAKFYLDKFK 170
             P+   +      +    A  +        +  ++   
Sbjct: 75  QRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALT 113


>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 241

 Score = 28.4 bits (62), Expect = 0.84
 Identities = 8/73 (10%), Positives = 17/73 (23%)

Query: 180 EELLDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDV 239
           E  L           + +  E   K    +             +          D + D 
Sbjct: 164 ETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDF 223

Query: 240 VKVQNEYLKKIEE 252
                  ++K++E
Sbjct: 224 KDKYESLVEKVKE 236


>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase
           {Phormidium lapideum [TaxId: 32060]}
          Length = 193

 Score = 26.5 bits (58), Expect = 3.0
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 76  RICLTPVGVQCVSKADHDIIQENGAAV-VDCSWAKIEETPFNKMKTNHPRLLPFLIAANP 134
           R+ L+P  V+ + +A H +  E  A +    +     +     + +        ++    
Sbjct: 15  RVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVKVK 74

Query: 135 INYGKPCKLSCVEALAATFIIAGFPKEAKFYLDK 168
                   L   + L  T++     +E    L +
Sbjct: 75  EPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMR 108


>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 209

 Score = 26.4 bits (58), Expect = 3.9
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 224 EELLDLYKECDTSTDVVKVQNEYLKKIEEERNMPNVPDFPPSESEEEEEEEEEEEEED 281
            ++   ++     T+   V+    +KI    N+ N         EE  + ++ EE+E 
Sbjct: 30  PKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEP 87


>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 387

 Score = 25.6 bits (56), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 215 WGRT-FLTLNEELLDLYKECDTSTDVVKVQNEYLKKIEEE 253
           W R+ F+ LN +L  LY +     +V +V  E    +E E
Sbjct: 9   WIRSRFVELNSQLEQLYYQQTDRANVQEVGTELKHTLESE 48


>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus
           thermophilus [TaxId: 274]}
          Length = 225

 Score = 25.3 bits (54), Expect = 8.5
 Identities = 12/60 (20%), Positives = 16/60 (26%)

Query: 183 LDLYKECDTIFYEDLDGERFPKEAKFYLDKFKWGRTFLTLNEELLDLYKECDTSTDVVKV 242
             L KE   + Y+ L  ER    A                 EE+  L      +   V  
Sbjct: 21  YRLLKEAPVVLYDRLVDERVLALAPGEKVYVGKEEGESEKQEEIHRLLLRHARAHPFVVR 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,211,670
Number of extensions: 61948
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 32
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)