BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4653
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 309 bits (792), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
++LDIK+ + RSDRVK D HPTEPW+L +LY+G V +WN+ET V+S +V + PVRA
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
KF+ RKNWI+ GSDD ++ VFNYNT E+ FEAH DY+R +AVHPT+P++L+ SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
+KLWNWE WA +Q FEGH H+VM + NPKD +TFAS LDRTVKVW LG ++PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLE
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 18 VKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-----PRKNW 71
V C +P +P AS + V VW+ Q+ +F + R +V P K +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++T SDD+ + +++Y T + E H V HPT P +++ S+D +K+WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN-SST 259
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+ ++ I +P + ++ D V LG+ P +L+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV------CDLPVRAAK 64
L V HPT P +++ +G + +WN T + K+ V C A
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC----IATH 279
Query: 65 FVPRKNWIVTGSDD 78
RKN+I +G D+
Sbjct: 280 PTGRKNYIASGFDN 293
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 307 bits (786), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
++LDIK+ + RSDRVK D HPTEPW+L +LY+G V +WN+ET V+S +V + PVRA
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
KF+ RKNWI+ GSDD ++ VFNYNT E+ FEAH DY+R +AVHPT+P++L+ SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
+KLWNWE WA +Q FEGH H+VM + NPKD +TFAS LDRTVKVW LG ++PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLE
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 18 VKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-----PRKNW 71
V C +P +P AS + V VW+ Q+ +F + R +V P K +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++T SDD+ + +++Y T + E H V HPT P +++ S+D +K+WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN-SST 259
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+ ++ I +P + ++ D V LG+ P +L+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV------CDLPVRAAK 64
L V HPT P +++ +G + +WN T + K+ V C A
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC----IATH 279
Query: 65 FVPRKNWIVTGSDD 78
RKN+I +G D+
Sbjct: 280 PTGRKNYIASGFDN 293
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
++LDIK+ + RSDRVK D HPTEPW+L +LY+G V +WN+ET V+S +V + PVRA
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
KF+ RKNWI+ GSDD ++ VFNYNT E+ FEAH DY+R +AVHPT+P++L+ SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
+KLWNWE WA +Q FEGH H+VM + NPKD +TFAS LDRTVKVW LG ++PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLE
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 18 VKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-----PRKNW 71
V C +P +P AS + V VW+ Q+ +F + R +V P K +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++T SDD+ + +++Y T + E H V HPT P +++ S+D +K+WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN-SST 259
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
+ ++ I +P + ++ D V LG+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV------CDLPVRAAK 64
L V HPT P +++ +G + +WN T + K+ V C A
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC----IATH 279
Query: 65 FVPRKNWIVTGSDD 78
RKN+I +G D+
Sbjct: 280 PTGRKNYIASGFDN 293
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
++LDIK+ + RSDRVK D HPTEPW+L +LY+G V +WN+ET V+S +V + PVRA
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
KF+ RKNWI+ GSDD ++ VFNYNT E+ FEAH DY+R +AVHPT+P++L+ SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
+KLWNWE WA +Q FEGH H+VM + NPKD +TFAS LDRTVKVW LG ++PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLE
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 18 VKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-----PRKNW 71
V C +P +P AS + V VW+ Q+ +F + R +V P K +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++T SDD+ + +++Y T + E H V HPT P +++ S+D +K+WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN-SST 259
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
+ ++ I +P + ++ D V LG+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV------CDLPVRAAK 64
L V HPT P +++ +G + +WN T + K+ V C A
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC----IATH 279
Query: 65 FVPRKNWIVTGSDD 78
RKN+I +G D+
Sbjct: 280 PTGRKNYIASGFDN 293
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 9/217 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ LT S V P + ++ + V +WN Q++++ V F P
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPD 355
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
I + SDD V ++N N + + HS VR VA P + ++SDD +KLWN
Sbjct: 356 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 413
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+ Q GH+ V + +P D+ T ASAS D+TVK+W + TL GH V
Sbjct: 414 -RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 470
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
V + D + S +DD+ VK+W+ +N +QTL
Sbjct: 471 RGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTL 504
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 9/217 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ LT S V P + ++ + V +WN Q +++ VR F P
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD 396
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
I + SDD V ++N N + + HS V VA P + ++SDD +KLWN
Sbjct: 397 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN- 454
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+ Q GH+ V + +P D T ASAS D+TVK+W + TL GH V
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
V + D + S +DD+ VK+W+ +N +QTL
Sbjct: 512 RGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTL 545
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 9/217 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ LT S V P + ++ + V +WN Q +++ V F P
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPD 191
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
I + SDD V ++N N + + HS VR VA P + ++SDD +KLWN
Sbjct: 192 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 249
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+ Q GH+ V + P D T ASAS D+TVK+W + TL GH V
Sbjct: 250 -RNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 306
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
V + D + S +DD+ VK+W+ +N +QTL
Sbjct: 307 WGVAFSP--DGQTIASASDDKTVKLWN-RNGQHLQTL 340
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
Query: 53 FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP 112
E VR F P I + SDD V ++N N + + HS V VA P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 113 FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
+ ++SDD +KLWN + Q GH+ V + +P D T ASAS D+TVK+W
Sbjct: 71 TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR 127
Query: 173 GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ TL GH V V + D + S +DD+ VK+W+ +N +QTL
Sbjct: 128 -NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTL 176
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ LT S V P + + ++ + V +WN Q +++ VR F P
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD 478
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
I + SDD V ++N N + + HS VR VA P + ++SDD +KLWN
Sbjct: 479 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 536
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
+ Q GH+ V + +P D T ASAS D+TVK+W
Sbjct: 537 -RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLW 576
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ LT S V+ P + ++ + V +WN Q +++ VR F P
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD 519
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
I + SDD V ++N N + + HS V VA P + ++S D +KLWN
Sbjct: 520 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V V++ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L H V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 10/220 (4%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
+ +R L ++V C D + +++S +G V VW+ T + + V A
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 65 FVPRKNWIVTGSDDMQVCVF------NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
+ P I G D + V+ N N + S H++Y+ + + +LT+S
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQLGSASP 177
D LW+ E Q F GH V+ + + P + NTF S D+ VW + S
Sbjct: 174 GDGTCALWDVESGQLLQS-FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
E HE VN V YY GD SG+DD +++D +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLR 270
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 39/236 (16%)
Query: 2 PLRLDIKRKLTARSDRV-------KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE 54
PL D + A+ V C ++ +L + +G +W+ E+ Q ++SF
Sbjct: 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193
Query: 55 VCDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP 112
V P + N V+G D + V++ + + +FE H V V +P+
Sbjct: 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253
Query: 113 FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-------- 164
+ SDD +L++ ++ I K++ F ++S+D
Sbjct: 254 AFASGSDDATCRLYDLRAD--------------REVAIYSKESIIFGASSVDFSLSGRLL 299
Query: 165 ------RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
T+ VW + S L GHE V+ + D SG+ D +++W
Sbjct: 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP--DGTAFCSGSWDHTLRVW 353
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 6/164 (3%)
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
K IV+ S D +V V++ T + H+ +V A P+ + D ++
Sbjct: 76 KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135
Query: 129 -----EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
E A ++ HT+Y+ D +AS D T +W + S + G
Sbjct: 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL-TASGDGTCALWDVESGQLLQSFHG 194
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
H V C+D +SG D+ +WD ++ CVQ E+
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ VWN ET + + + VR ++ +V+GS D + V++ T + H H
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
VRCV + +++ + D ++K+W+ E C +GHT+ V + D
Sbjct: 239 VAAVRCVQYDGRR--VVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF---DGIHV 292
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
S SLD +++VW + + + TL GH+ + ++ L+SG D VKIWD +
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KDNILVSGNADSTVKIWDIKT 348
Query: 219 KTCVQTLES 227
C+QTL+
Sbjct: 349 GQCLQTLQG 357
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
R N I++GS D + V+N T E H+ H+ VRC+ +H + +++ S D +++W+
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 225
Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
E C V GH V + D S + D VKVW + + TL+GH
Sbjct: 226 IETG-QCLHVLMGHVAAVRCV---QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
V + + D +++SG+ D +++WD + C+ TL
Sbjct: 282 VYSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L + V+C LH E +++ + + VW+ ET Q + VR ++ R+
Sbjct: 195 LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR- 251
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+V+G+ D V V++ T H+ + H++ R ++ +++ S D I++W+ E
Sbjct: 252 -VVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---HEKG 187
C GH + + +N S + D TVK+W + + TL+G H+
Sbjct: 309 G-NCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ---TLESG 228
V C+ + +K ++I+ +DD VK+WD + ++ TLESG
Sbjct: 365 VTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 404
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N IV+GSDD + V++ T + + H+ V + +++ S D +K+WN E
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE 187
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
C GHT V + ++ K S S D T++VW + + L GH V
Sbjct: 188 TG-ECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
CV Y D ++SGA D +VK+WD + +TC+ TL+
Sbjct: 244 CVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 4/222 (1%)
Query: 4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA 63
RLD++ L V D+ T P +S + H+ +W+ E + +KS + +
Sbjct: 69 RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 128
Query: 64 KFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI 123
F P ++ TG+ +V +F + ++ +S + ++ +A P +L + + D +I
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
+++ EGH + + +P D+ +AS D +K++ + A+ TL G
Sbjct: 189 NIFDIATG-KLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
H V V + D + +S + D+ VK+WD +TCV T
Sbjct: 247 HASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 14/209 (6%)
Query: 17 RVKCCDLHPTEPWMLA----------SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
++K D P + W LA + G V+++ E+ + S + + + +
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
P ++ +G+ D + +F+ T + H+ E H+ +R + P L+T+SDD IK++
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ + A GH +V+ + P D + F S+S D++VKVW +G+ + T H+
Sbjct: 234 DVQHA-NLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291
Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWD 215
V V Y G K ++S DD+ + I+D
Sbjct: 292 QVWGVKYNGNGSK--IVSVGDDQEIHIYD 318
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 72 IVTGSDDMQVCVFNY--NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
+VTGS D V V+ + L+ S E H V V + T P +SS D I+LW+ E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
+ + G + +P D+ A+ + V ++ + S ++L+ K +
Sbjct: 111 NGKQIKSIDAGPVD-AWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
+ Y D YL SGA D ++ I+D + TLE
Sbjct: 169 SIAY--SPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 151 NPKDNN-TFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLISGAD 207
N K+N+ T + SLD VKVW+ + +LEGH+ GV VD H P S +
Sbjct: 43 NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSL 100
Query: 208 DRLVKIWDYQNKTCVQTLESG 228
D +++WD +N ++++++G
Sbjct: 101 DAHIRLWDLENGKQIKSIDAG 121
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 15/229 (6%)
Query: 2 PLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
P L R L S +V D P + W++++ +G + VWN T+Q + ++ V
Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYV-RCVAVHPTQPF 113
F P + G D +FN ++ + H Y C V +
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 114 LLTSSDDMLIKLWNWEKAWAC----QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV 169
L+T S D LW+ + GHT V+ + IN + N F S S D TV++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 170 WQLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
W L S T GHE +N V ++ G + +G+DD +++D +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQR--FGTGSDDGTCRLFDMR 279
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 14/141 (9%)
Query: 84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ--VFEGH 141
FN L + + HS V + P + +++++S D + +WN A Q+ + H
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWN---ALTSQKTHAIKLH 107
Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP-------NFTLEGHEKGVNCVDYY 194
+VM+ P + + A LD ++ L S + + L GH KG Y
Sbjct: 108 CPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH-KGYASSCQY 165
Query: 195 HGGDKPYLISGADDRLVKIWD 215
+ LI+G+ D+ +WD
Sbjct: 166 VPDQETRLITGSGDQTCVLWD 186
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 88 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 208 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 265
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 266 QTKEIVQKLQ 275
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 134 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 192 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 228
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 12 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 68
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 255
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 215 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 272
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 273 QTKEIVQKLQ 282
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 141 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 199 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKT 235
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 19 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 75
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 262
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 106 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 226 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 283
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 284 QTKEIVQKLQ 293
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 152 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 210 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 246
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 30 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 86
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 273
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 215 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 272
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 273 QTKEIVQKLQ 282
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 141 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 199 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 235
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 19 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 75
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 262
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 215 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 272
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 273 QTKEIVQKLQ 282
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 141 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 199 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKT 235
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 19 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 75
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 262
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 209 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 266
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 267 QTKEIVQKLQ 276
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 135 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 193 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 229
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 13 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 69
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 256
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 209 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 266
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 267 QTKEIVQKLQ 276
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 135 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 193 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 229
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 13 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 69
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 256
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 85 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 205 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 262
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 263 QTKEIVQKLQ 272
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 131 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 189 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 225
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 9 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 65
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 252
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 90 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 210 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 267
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 268 QTKEIVQKLQ 277
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 136 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 194 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 230
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 14 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 70
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 257
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 113 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 233 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 290
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 291 QTKEIVQKLQ 300
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 159 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 217 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKT 253
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 37 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 93
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 128
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 280
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 94 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 214 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 271
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 272 QTKEIVQKLQ 281
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 140 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 198 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 234
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 18 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 74
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 109
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 261
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 212 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 269
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 270 QTKEIVQKLQ 279
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 138 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 196 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 232
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 16 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 259
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKL+
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ AS + + +W + K+ L + +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 138 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 196 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 232
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 212 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 269
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 270 QTKEIVQKLQ 279
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + A++S D+ +K+W T+ GH+ G++
Sbjct: 16 YALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 259
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 212 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 269
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 270 QTKEIVQKLQ 279
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 138 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 196 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 232
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 16 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 259
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKL+
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D LV IW+
Sbjct: 231 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 288
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 289 QTKEIVQKLQ 298
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+K L + V P W+ +S + + +W + K+ L + +
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
+ K C + H+ V + N +D + S+S D ++W S TL +
Sbjct: 157 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V+ V + G Y+++ D +K+WDY C++T
Sbjct: 215 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKT 251
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A + GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 35 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 91
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 278
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
E HS +V VA+ F +++S D ++LWN + CQ F GHT V+ + +P D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG-QCQYKFLGHTKDVLSVAFSP-D 120
Query: 155 NNTFASASLDRTVKVWQL-GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
N S D ++VW + G + H V+CV + D P ++SG D LVK+
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 214 WDYQNKTCVQTLES 227
WD V L+
Sbjct: 181 WDLATGRLVTDLKG 194
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 11/221 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R+L S V L + +++ ++ + +WN + Q F V + F P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFE--AHSDYVRCVAVHPT--QPFLLTSSDDMLIK 124
IV+G D + V+N E H+ AH+D+V CV P+ P +++ D L+K
Sbjct: 121 NRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
+W+ +GHT+YV + ++P D + AS+ D ++W L + +
Sbjct: 180 VWDLATGRLVTD-LKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDL-TKGEALSEMAA 236
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+N + + Y + A ++ ++I+D +NK + L
Sbjct: 237 GAPINQICF---SPNRYWMCAATEKGIRIFDLENKDIIVEL 274
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
IV+G D V V++ T + H++YV V V P +S D + +LW+ K
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN-- 189
A ++ G + QI +P N + A+ ++ ++++ L + L +G
Sbjct: 229 EALSEMAAGAP--INQICFSP--NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKI 284
Query: 190 ---CVDYYHGGDKPYLISGADDRLVKIW 214
CV D L SG D ++++W
Sbjct: 285 VPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N+ V+ S D + ++N + + F H+ V VA P +++ D +++WN +
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 130 KAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
HT +V + +P D S D VKVW L + L+GH V
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYV 199
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
V D S D + ++WD + + +G
Sbjct: 200 TSVTVSP--DGSLCASSDKDGVARLWDLTKGEALSEMAAG 237
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
+R+LT S V+ L + L+ ++G + +W+ + + F V + F
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERF---HSFEAHSDYVRCVAVHPT--QPFLLTSSDDML 122
IV+ S D + ++N ++ E H D+V CV P QP ++++S D
Sbjct: 483 DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT 542
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+K+WN + GHT YV + ++P D + AS D V +W L ++LE
Sbjct: 543 VKVWNLSNC-KLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE 600
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ + + Y + A + +KIWD ++K+ V+ L+
Sbjct: 601 AN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN--WEK 130
++GS D ++ +++ F H+ V VA ++++S D IKLWN E
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 131 AWACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
+ + EGH +V + +P T SAS D+TVKVW L + TL GH V+
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
V D SG D +V +WD + +LE+
Sbjct: 566 TVAVSP--DGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 94 SFEAHSDYVRCVAVH-PTQPFLLTSSDDMLIKLWNW---EKAWA-CQQVFEGHTHYVMQI 148
+ AH+D V +A ++++S D I LW +KA+ Q+ GH+H+V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
V++ D S S D +++W L + GH K V V + D ++S + D
Sbjct: 437 VLS-SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRD 493
Query: 209 RLVKIWDYQNKTCVQTLESG 228
R +K+W+ + C T+ G
Sbjct: 494 RTIKLWNTLGE-CKYTISEG 512
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
IV+ S D V V+N + + + H+ YV VAV P + D ++ LW+ +
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 132 WACQQVFEGHTHYVMQ-IVINPKDNNTFASASLDRTVKVWQLGSAS------PNFTLEGH 184
++++ + V+ + +P N + A+ + +K+W L S S + E
Sbjct: 594 ---KKLYSLEANSVIHALCFSP--NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAE 648
Query: 185 E-----------KGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ K + C D L SG D ++++W
Sbjct: 649 KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + AH
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD T+K+W T GH+ C+ ++ G K +++SG++D +V IW+
Sbjct: 212 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNMVYIWNL 269
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 270 QTKEIVQKLQ 279
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 5/215 (2%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L + V P W+ +S + + +W + K+ L + + N
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W+ K
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VK 140
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVN 189
C + H+ V + N +D + S+S D ++W S TL + V+
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V + G Y+++ D +K+WDY C++T
Sbjct: 200 FVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 232
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 259
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
I+TGS D V V++ NT E ++ H + V + + ++T S D I +W+
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP 243
Query: 132 --WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
++V GH V + D+ SAS DRT+KVW + TL GH++G+
Sbjct: 244 TDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
C+ Y ++SG+ D +++WD + C++ LE
Sbjct: 301 CLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEG 334
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
IV+G D + +++ NTLE H+ V C+ + ++T S D +++W+
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTG 203
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---NFTLEGHEKGV 188
+ H V+ + N N + S DR++ VW + S + L GH V
Sbjct: 204 EMLNTLIH-HCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
N VD+ D Y++S + DR +K+W+ V+TL
Sbjct: 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 19/163 (11%)
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+IV+ S D + V+N +T E + H + C+ +++ S D I+LW+ E
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC 325
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA----SPN-----FTL 181
AC +V EGH V I DN S + D +KVW L +A +P TL
Sbjct: 326 G-ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
H V + + D+ ++S + D + IWD+ N Q
Sbjct: 382 VEHSGRVFRLQF----DEFQIVSSSHDDTILIWDFLNDPAAQA 420
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
L+ KR LT + V C L E ++ + V VW+ T + + + V +
Sbjct: 163 LECKRILTGHTGSVLC--LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 65 FVPRKNWIVTGSDDMQVCVFNYN-----TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
F +VT S D + V++ TL R H V V +++++S
Sbjct: 221 F--NNGMMVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVDFD--DKYIVSASG 274
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
D IK+WN C+ V + H + +D S S D T+++W + +
Sbjct: 275 DRTIKVWNTS---TCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLR 330
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
LEGHE+ V C+ + D ++SGA D +K+WD
Sbjct: 331 VLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWD 362
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
D+ S D T+K+W + L GH V C+ Y D+ +I+G+ D V++
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRV 197
Query: 214 WDYQNKTCVQTL 225
WD + TL
Sbjct: 198 WDVNTGEMLNTL 209
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 5/215 (2%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L + V P W+ +S + + +W + K+ L + + N
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+V+ SDD + +++ ++ + + + HS+YV C +P +++ S D +++W+ K
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VK 140
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVN 189
C + H+ V + N +D + S+S D ++W S TL + V+
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
V + G Y+++ D +K+WDY C++T
Sbjct: 200 FVKFSPNG--KYILAATLDNDLKLWDYSKGKCLKT 232
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + AH
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
A A+LD +K+W T GH+ C+ ++ G K +++SG++D +V IW+
Sbjct: 212 A-ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNMVYIWNL 269
Query: 217 QNKTCVQTLE 226
Q K VQ L+
Sbjct: 270 QTKEIVQKLQ 279
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+A GHT V + +P + AS+S D+ +K+W T+ GH+ G++
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D D L+S +DD+ +KIWD + C++TL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPRKNWIVTGS 76
P ++LA+ + + +W++ + +K++ + C + A V WIV+GS
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGS 259
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLW 126
+D V ++N T E + H+D V A HPT+ + +++ +D IKLW
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 47 NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA 106
N N S DL +R+ F P ++ TG++D + +++ + + H + +
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 172
Query: 107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
P+ L++ S D +++W+ + C V + ++P D A+ SLDR
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRA 230
Query: 167 VKVWQLGSA-------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-- 217
V+VW + S N + GH+ V V + G ++SG+ DR VK+W+ Q
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VVSGSLDRSVKLWNLQNA 288
Query: 218 -NKTCVQTLESG 228
NK+ +T SG
Sbjct: 289 NNKSDSKTPNSG 300
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
Y+ + +P D A+ + DR +++W + + L+GHE+ + +DY+ GDK L+
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LV 181
Query: 204 SGADDRLVKIWDYQNKTCVQTL--ESGI 229
SG+ DR V+IWD + C TL E G+
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGV 209
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 23/223 (10%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
P ++ + + +W+ E + V + + + + + P + +V+GS D V
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQV---- 137
+++ T + + D V VAV P ++ S D +++W+ E + +++
Sbjct: 191 IWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 249
Query: 138 --FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA-------SPN-----FTLEG 183
GH V +V +D + S SLDR+VK+W L +A +PN T G
Sbjct: 250 ESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
H+ V V + Y++SG+ DR V WD ++ + L+
Sbjct: 309 HKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 26/188 (13%)
Query: 16 DRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-------VRAAKFVP 67
D V + P + ++ A + V VW+ ET V+ + + V + F
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFH------------SFEAHSDYVRCVAVHPTQPFLL 115
+V+GS D V ++N ++ H D+V VA ++L
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN-----NTFASASLDRTVKVW 170
+ S D + W+ +K+ + +GH + V+ + + + N FA+ S D ++W
Sbjct: 327 SGSKDRGVLFWD-KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Query: 171 QLGSASPN 178
+ +PN
Sbjct: 386 KYKKIAPN 393
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVF--NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
VR + P N++ + S D C++ N + E + E H + V+ VA P+ L T
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 118 SDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
S D + +W + E + C V HT V +V +P ASAS D TVK+++
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEED 182
Query: 176 S--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
TLEGHE V + + G + L S +DDR V+IW
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQR--LASCSDDRTVRIW 221
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 25 PTEPWMLASLYNGHVHVW--NHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
P ++ ++ ++ +W N + + V + E + V++ + P N + T S D V
Sbjct: 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130
Query: 83 VFNYNTLERFHS---FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-AWACQQVF 138
V+ + + + +H+ V+ V HP+Q L ++S D +KL+ E+ W C
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190
Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
EGH V + +P AS S DRTV++W+ L G+E+GV C
Sbjct: 191 EGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQ-------YLPGNEQGVAC 234
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 87 NTLERFHSFEAHSDYVRC--VAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVF-EGHT 142
++L AH D RC +A +P L + D I++W E +W C+ V EGH
Sbjct: 3 DSLVLLGRVPAHPDS-RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ 61
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN--FTLEGHEKGVNCVDYYHGGDKP 200
V ++ +P N ASAS D T +W+ TLEGHE V V + G+
Sbjct: 62 RTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-- 118
Query: 201 YLISGADDRLVKIWDYQNK---TCVQTLES 227
L + + D+ V +W+ + CV L S
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEK 130
H +AHS V CVA +P +P LL S SDD + W +++
Sbjct: 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
+R L S V + + L+ ++G + +W+ T + F V + F
Sbjct: 56 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFH-SFEAHSDYVRCVAVHP--TQPFLLTSSDDMLIK 124
IV+GS D + ++N + ++ E+HS++V CV P + P +++ D L+K
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
+WN + GHT Y+ + ++P D + AS D +W L +TL+G
Sbjct: 176 VWNLANC-KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ +N + + Y + A +KIWD + K V L+
Sbjct: 234 DI-INALCF---SPNRYWLCAATGPSIKIWDLEGKIIVDELK 271
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
NY +R + HS +V V + F L+ S D ++LW+ ++ F GHT
Sbjct: 51 NYGIPQR--ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR-FVGHTKD 107
Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQ-LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
V+ + + DN S S D+T+K+W LG E H + V+CV + P ++
Sbjct: 108 VLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 204 SGADDRLVKIWDYQN 218
S D+LVK+W+ N
Sbjct: 167 SCGWDKLVKVWNLAN 181
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW 132
++GS D + +++ T F H+ V VA +++ S D IKLWN
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 133 ACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
E H+ +V + +P +N S D+ VKVW L + GH +N V
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
D SG D +WD + TL+ G
Sbjct: 199 TVSP--DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 135 QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-----TLEGHEKGVN 189
+ +GH +V QI P+ + SAS D+T+ +W+L N+ L GH V+
Sbjct: 8 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
D D + +SG+ D +++WD T +
Sbjct: 68 --DVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 99
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
+R L S V + + L+ ++G + +W+ T + F V + F
Sbjct: 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFH-SFEAHSDYVRCVAVHP--TQPFLLTSSDDMLIK 124
IV+GS D + ++N + ++ E+HS++V CV P + P +++ D L+K
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
+WN + GHT Y+ + ++P D + AS D +W L +TL+G
Sbjct: 199 VWNLANC-KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ +N + + Y + A +KIWD + K V L+
Sbjct: 257 DI-INALCF---SPNRYWLCAATGPSIKIWDLEGKIIVDELK 294
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
NY +R + HS +V V + F L+ S D ++LW+ ++ F GHT
Sbjct: 74 NYGIPQR--ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR-FVGHTKD 130
Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQ-LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
V+ + + DN S S D+T+K+W LG E H + V+CV + P ++
Sbjct: 131 VLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 204 SGADDRLVKIWDYQN 218
S D+LVK+W+ N
Sbjct: 190 SCGWDKLVKVWNLAN 204
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW 132
++GS D + +++ T F H+ V VA +++ S D IKLWN
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 133 ACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
E H+ +V + +P +N S D+ VKVW L + GH +N V
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
D SG D +WD + TL+ G
Sbjct: 222 TVSP--DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 135 QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-----TLEGHEKGVN 189
+ +GH +V QI P+ + SAS D+T+ +W+L N+ L GH V+
Sbjct: 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
D D + +SG+ D +++WD T +
Sbjct: 91 --DVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 122
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 4 RLDIKRKLTARSDRVKCCDLH--PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
R+ ++ + T R K +H +L++ +G + +W+ T V + + V
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
+ P N++ G D ++N T E H+ Y+ C ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
S D LW+ E F GHT VM + + P D F S + D + K+W +
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
T GHE +N + ++ G+ +G+DD +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
+++ S D ++ +++ T + H+ S +V A P+ ++ D + ++N +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+V GHT Y+ D+N ++S D T +W + + T GH V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ D +SGA D K+WD + C QT
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 53/250 (21%)
Query: 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVK-SFEVCDLP--VRAAKFVPRK 69
RS V C P+ ++ + ++N +T + NV+ S E+ + +F+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D 154
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N IVT S D +++ T ++ +F H+ V +++ P ++ + D KLW+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL----------------G 173
+ C+Q F GH + I P + N FA+ S D T +++ L G
Sbjct: 215 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 174 SASPNFT----------------------------LEGHEKGVNCVDYYHGGDKPYLISG 205
S +F+ L GH+ V+C+ D + +G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATG 330
Query: 206 ADDRLVKIWD 215
+ D +KIW+
Sbjct: 331 SWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 4 RLDIKRKLTARSDRVKCCDLH--PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
R+ ++ + T R K +H +L++ +G + +W+ T V + + V
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
+ P N++ G D ++N T E H+ Y+ C ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
S D LW+ E F GHT VM + + P D F S + D + K+W +
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
T GHE +N + ++ G+ +G+DD +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
+++ S D ++ +++ T + H+ S +V A P+ ++ D + ++N +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+V GHT Y+ D+N ++S D T +W + + T GH V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ D +SGA D K+WD + C QT
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 53/250 (21%)
Query: 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVK-SFEVCDLP--VRAAKFVPRK 69
RS V C P+ ++ + ++N +T + NV+ S E+ + +F+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D 154
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N IVT S D +++ T ++ +F H+ V +++ P ++ + D KLW+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL----------------G 173
+ C+Q F GH + I P + N FA+ S D T +++ L G
Sbjct: 215 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 174 SASPNFT----------------------------LEGHEKGVNCVDYYHGGDKPYLISG 205
S +F+ L GH+ V+C+ D + +G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATG 330
Query: 206 ADDRLVKIWD 215
+ D +KIW+
Sbjct: 331 SWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 4 RLDIKRKLTARSDRVKCCDLH-PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVR 61
R+ ++ + T R K +H T+ +L S +G + +W+ T V + + V
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 112
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
+ P N++ G D ++N T E H+ Y+ C ++TS
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 171
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
S D LW+ E F GHT VM + + P D F S + D + K+W +
Sbjct: 172 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 229
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
T GHE +N + ++ G+ +G+DD +++D +
Sbjct: 230 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 267
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
+V+ S D ++ +++ T + H+ S +V A P+ ++ D + ++N +
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+V GHT Y+ D+N ++S D T +W + + T GH V
Sbjct: 141 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 198
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ D +SGA D K+WD + C QT
Sbjct: 199 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 233
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 53/250 (21%)
Query: 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVK-SFEVCDLP--VRAAKFVPRK 69
RS V C P+ ++ + ++N +T + NV+ S E+ + +F+
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D 165
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N IVT S D +++ T ++ +F H+ V +++ P ++ + D KLW+
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL----------------G 173
+ C+Q F GH + I P + N FA+ S D T +++ L G
Sbjct: 226 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 283
Query: 174 SASPNFT----------------------------LEGHEKGVNCVDYYHGGDKPYLISG 205
S +F+ L GH+ V+C+ D + +G
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATG 341
Query: 206 ADDRLVKIWD 215
+ D +KIW+
Sbjct: 342 SWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 4 RLDIKRKLTARSDRVKCCDLH-PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVR 61
R+ ++ + T R K +H T+ +L S +G + +W+ T V + + V
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
+ P N++ G D ++N T E H+ Y+ C ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
S D LW+ E F GHT VM + + P D F S + D + K+W +
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
T GHE +N + ++ G+ +G+DD +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
+V+ S D ++ +++ T + H+ S +V A P+ ++ D + ++N +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+V GHT Y+ D+N ++S D T +W + + T GH V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ D +SGA D K+WD + C QT
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 53/250 (21%)
Query: 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVK-SFEVCDLP--VRAAKFVPRK 69
RS V C P+ ++ + ++N +T + NV+ S E+ + +F+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D 154
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N IVT S D +++ T ++ +F H+ V +++ P ++ + D KLW+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL----------------G 173
+ C+Q F GH + I P + N FA+ S D T +++ L G
Sbjct: 215 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 174 SASPNFT----------------------------LEGHEKGVNCVDYYHGGDKPYLISG 205
S +F+ L GH+ V+C+ D + +G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATG 330
Query: 206 ADDRLVKIWD 215
+ D +KIW+
Sbjct: 331 SWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 4 RLDIKRKLTARSDRVKCCDLH-PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVR 61
R+ ++ + T R K +H T+ +L S +G + +W+ T V + + V
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
+ P N++ G D ++N T E H+ Y+ C ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
S D LW+ E F GHT VM + + P D F S + D + K+W +
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
T GHE +N + ++ G+ +G+DD +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
+V+ S D ++ +++ T + H+ S +V A P+ ++ D + ++N +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+V GHT Y+ D+N ++S D T +W + + T GH V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ D +SGA D K+WD + C QT
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 53/250 (21%)
Query: 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVK-SFEVCDLP--VRAAKFVPRK 69
RS V C P+ ++ + ++N +T + NV+ S E+ + +F+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D 154
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N IVT S D +++ T ++ +F H+ V +++ P ++ + D KLW+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL----------------G 173
+ C+Q F GH + I P + N FA+ S D T +++ L G
Sbjct: 215 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 174 SASPNFT----------------------------LEGHEKGVNCVDYYHGGDKPYLISG 205
S +F+ L GH+ V+C+ D + +G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATG 330
Query: 206 ADDRLVKIWD 215
+ D +KIW+
Sbjct: 331 SWDSFLKIWN 340
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76 SDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
+DD ++ ++ N NT + H+ +AH+ V C++ +P F+L T S D + LW+
Sbjct: 253 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
FE H + Q+ +P + AS+ DR + VW L + E E G +
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
+ HGG ++P++I S ++D ++++W
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 19/129 (14%)
Query: 113 FLLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
+LL++SDD I LW+ + + +F GHT V + + + F S + D+
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 167 VKVWQL---GSASPNFTLEGHEKGVNCVDYYHGGDKPY----LISGADDRLVKIWDYQN- 218
+ +W ++ P+ T++ H VNC+ + PY L +G+ D+ V +WD +N
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 312
Query: 219 KTCVQTLES 227
K + + ES
Sbjct: 313 KLKLHSFES 321
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 20/189 (10%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVCDL---PV 60
+D K T + V+ H + S+ + + +W+ N K D V
Sbjct: 223 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 282
Query: 61 RAAKFVPRKNWIV-TGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTS 117
F P +I+ TGS D V +++ L+ + HSFE+H D + V P + L +S
Sbjct: 283 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 342
Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
D + +W+ K Q + GHT + NP + S S D
Sbjct: 343 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 402
Query: 165 RTVKVWQLG 173
++VWQ+
Sbjct: 403 NIMQVWQMA 411
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 52/172 (30%)
Query: 60 VRAAKFVPRKNWIV-TGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
V A+++P+ ++ T + V VF+Y HP++P
Sbjct: 133 VNRARYMPQNACVIATKTPSSDVLVFDYTK-------------------HPSKP------ 167
Query: 119 DDMLIKLWNWEKAWACQQ--VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
E + CQ GH + NP N SAS D T+ +W + +A+
Sbjct: 168 ----------EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NAT 216
Query: 177 PN----------FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
P FT GH V V +H + S ADD+ + IWD +N
Sbjct: 217 PKEHRVIDAKNIFT--GHTAVVEDV-AWHLLHESLFGSVADDQKLMIWDTRN 265
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76 SDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
+DD ++ ++ N NT + H+ +AH+ V C++ +P F+L T S D + LW+
Sbjct: 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
FE H + Q+ +P + AS+ DR + VW L + E E G +
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
+ HGG ++P++I S ++D ++++W
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 19/129 (14%)
Query: 113 FLLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
+LL++SDD I LW+ + + +F GHT V + + + F S + D+
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 167 VKVWQL---GSASPNFTLEGHEKGVNCVDYYHGGDKPY----LISGADDRLVKIWDYQN- 218
+ +W ++ P+ T++ H VNC+ + PY L +G+ D+ V +WD +N
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 310
Query: 219 KTCVQTLES 227
K + + ES
Sbjct: 311 KLKLHSFES 319
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 20/189 (10%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVCDL---PV 60
+D K T + V+ H + S+ + + +W+ N K D V
Sbjct: 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280
Query: 61 RAAKFVPRKNWIV-TGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTS 117
F P +I+ TGS D V +++ L+ + HSFE+H D + V P + L +S
Sbjct: 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
D + +W+ K Q + GHT + NP + S S D
Sbjct: 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400
Query: 165 RTVKVWQLG 173
++VWQ+
Sbjct: 401 NIMQVWQMA 409
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 129 EKAWACQQ--VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN-------- 178
E + CQ GH + NP N SAS D T+ +W + +A+P
Sbjct: 166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAK 224
Query: 179 --FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
FT GH V V +H + S ADD+ + IWD +N
Sbjct: 225 NIFT--GHTAVVEDV-AWHLLHESLFGSVADDQKLMIWDTRN 263
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76 SDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
+DD ++ ++ N NT + H+ +AH+ V C++ +P F+L T S D + LW+
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
FE H + Q+ +P + AS+ DR + VW L + E E G +
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
+ HGG ++P++I S ++D ++++W
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 19/129 (14%)
Query: 113 FLLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
+LL++SDD I LW+ + + +F GHT V + + + F S + D+
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 167 VKVWQL---GSASPNFTLEGHEKGVNCVDYYHGGDKPY----LISGADDRLVKIWDYQN- 218
+ +W ++ P+ T++ H VNC+ + PY L +G+ D+ V +WD +N
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 314
Query: 219 KTCVQTLES 227
K + + ES
Sbjct: 315 KLKLHSFES 323
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 20/189 (10%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVCDL---PV 60
+D K T + V+ H + S+ + + +W+ N K D V
Sbjct: 225 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 284
Query: 61 RAAKFVPRKNWIV-TGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTS 117
F P +I+ TGS D V +++ L+ + HSFE+H D + V P + L +S
Sbjct: 285 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 344
Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
D + +W+ K Q + GHT + NP + S S D
Sbjct: 345 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 404
Query: 165 RTVKVWQLG 173
++VWQ+
Sbjct: 405 NIMQVWQMA 413
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 129 EKAWACQQ--VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN-------- 178
E + CQ GH + NP N SAS D T+ +W + +A+P
Sbjct: 170 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAK 228
Query: 179 --FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
FT GH V V +H + S ADD+ + IWD +N
Sbjct: 229 NIFT--GHTAVVEDV-AWHLLHESLFGSVADDQKLMIWDTRN 267
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76 SDDMQVCVFNY---NTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
+DD ++ +++ NT + HS +AH+ V C++ +P F+L T S D + LW+
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
FE H + Q+ +P + AS+ DR + VW L + E E G +
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL 366
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
+ HGG ++P++I S ++D ++++W
Sbjct: 367 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 114 LLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167
LL++SDD I LW+ K + +F GHT V + + + F S + D+ +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 168 KVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPY----LISGADDRLVKIWDYQN-K 219
+W S + P+ +++ H VNC+ + PY L +G+ D+ V +WD +N K
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNLK 307
Query: 220 TCVQTLES 227
+ + ES
Sbjct: 308 LKLHSFES 315
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 20/189 (10%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVK---SFEVCDLPV 60
+D K T + V+ H + S+ + + +W+ +N K S + V
Sbjct: 217 VDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEV 276
Query: 61 RAAKFVPRKNWIV-TGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTS 117
F P +I+ TGS D V +++ L+ + HSFE+H D + V P + L +S
Sbjct: 277 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 336
Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
D + +W+ K Q + GHT + NP + S S D
Sbjct: 337 GTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Query: 165 RTVKVWQLG 173
++VWQ+
Sbjct: 397 NIMQVWQMA 405
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ V+ ET + + + + V F +I T S D +V ++N T E H+++ H
Sbjct: 645 LQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEH 704
Query: 99 SDYVRCVAVHPTQPFLL--TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
S+ V C + LL T S D +KLW+ + C+ GHT+ V +P D+
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDK 762
Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
AS S D T+K+W SA+ K +N ++ + P
Sbjct: 763 LLASCSADGTLKLWDATSAN-------ERKSINVKQFFLNLEDP 799
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 16/207 (7%)
Query: 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS 76
+V CC L P ++ NG + + N+ +S V +F + +++ S
Sbjct: 969 QVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSS 1028
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW-----EKA 131
DD ++ V+N+ L++ H + V+ + LL+ S D +K+WN EK
Sbjct: 1029 DDAEIQVWNWQ-LDKCIFLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKD 1086
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+ C H V+ I+ D F+S S D+T K+W P L GH V C
Sbjct: 1087 FVC------HQGTVLSCDIS-HDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCS 1139
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQN 218
+ D L +G D+ ++IW+ N
Sbjct: 1140 AF--SVDSTLLATGDDNGEIRIWNVSN 1164
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 4/158 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
V A F I + D + VF T E+ +AH D V C A F+ T S
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCS 682
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQI-VINPKDNNTFASASLDRTVKVWQLGSASP 177
D +K+WN ++ H+ V N + A+ S D +K+W L
Sbjct: 683 VDKKVKIWN-SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKEC 741
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
T+ GH VN + D L S + D +K+WD
Sbjct: 742 RNTMFGHTNSVNHCRF--SPDDKLLASCSADGTLKLWD 777
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
D+ A+ S+D+ VK+W + T + H + VNC + + L +G+ D +K+
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 214 WDYQNKTCVQTL 225
WD K C T+
Sbjct: 734 WDLNQKECRNTM 745
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D R + A +++ D+H + +L ++ GH H T Q CD F
Sbjct: 815 DGARIMVAAKNKIFLFDIHTS--GLLGEIHTGH-----HSTIQ------YCD-------F 854
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
P+ + V V ++N ++ + H +V V P LTSSDD I+L
Sbjct: 855 SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Query: 126 WNWEK 130
W +K
Sbjct: 915 WETKK 919
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
+D AS D+T++V++ + ++ HE V C + D ++ + + D+ VK
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF--STDDRFIATCSVDKKVK 688
Query: 213 IWDYQNKTCVQT 224
IW+ V T
Sbjct: 689 IWNSMTGELVHT 700
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVW-----NHETNQNVKSF--EVCDL 58
+ + + ++ V C P + + + +G + +W N + NVK F + D
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP 799
Query: 59 PVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNT---LERFHSFEAHSDYVRCVAVHPT 110
V +W G+ M ++ +F+ +T L H+ H ++ P
Sbjct: 800 QEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHT--GHHSTIQYCDFSPQ 857
Query: 111 QPFLLTSSDDMLIKLWNWE---KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167
+ + ++LWN + K C+ GH +V ++ +P D ++F ++S D+T+
Sbjct: 858 NHLAVVALSQYCVELWNTDSRSKVADCR----GHLSWVHGVMFSP-DGSSFLTSSDDQTI 912
Query: 168 KVWQLGSASPN 178
++W+ N
Sbjct: 913 RLWETKKVCKN 923
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 17/156 (10%)
Query: 76 SDDMQVCVFNY---NTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
+DD ++ +++ T + H +AH+ V C++ +P F+L T S D + LW+
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
FE H + Q+ +P + AS+ DR + VW L + E E G +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
+ HGG ++P++I S ++D +++IW
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 114 LLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167
LL++SDD + LW+ K + +F GH+ V + + + F S + D+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 168 KVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPY----LISGADDRLVKIWDYQN-K 219
+W S + P+ ++ H VNC+ + PY L +G+ D+ V +WD +N K
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNLK 309
Query: 220 TCVQTLES 227
+ T ES
Sbjct: 310 LKLHTFES 317
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 20/189 (10%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVCDL---PV 60
+D K T S V+ H + S+ + + +W+ +N K + D V
Sbjct: 219 VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEV 278
Query: 61 RAAKFVPRKNWIV-TGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTS 117
F P +I+ TGS D V +++ L+ + H+FE+H D + V P + L +S
Sbjct: 279 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
D + +W+ K Q + GHT + NP + S S D
Sbjct: 339 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Query: 165 RTVKVWQLG 173
+++WQ+
Sbjct: 399 NIMQIWQMA 407
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Query: 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS 76
+V CC L P ++ +G + + N+ S VR +F +++ S
Sbjct: 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
+D + V+N+ T + + +AH + V+ + LL+ S D +K+WN ++
Sbjct: 1023 EDSVIQVWNWQTGD-YVFLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITG-RIER 1079
Query: 137 VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG 196
F H V+ I+ D F+S S D+T K+W SP L+GH V C +
Sbjct: 1080 DFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--S 1136
Query: 197 GDKPYLISGADDRLVKIWDYQN 218
D L +G D+ ++IW+ +
Sbjct: 1137 LDGILLATGDDNGEIRIWNVSD 1158
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ V+ ET + + + + V F ++I T S D +V +++ T + H+++ H
Sbjct: 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698
Query: 99 SDYVRCVAVHPTQPFLL--TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
S+ V C LL T S+D +KLW+ + C+ GHT+ V +P D+
Sbjct: 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDE 756
Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
AS S D T+++W + SA+ K +N ++ + P
Sbjct: 757 LLASCSADGTLRLWDVRSAN-------ERKSINVKRFFLSSEDP 793
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
A F I + D + VF T E+ +AH D V C A ++ T S D
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSASPNFTL 181
+K+W+ ++ H+ V K N+ A+ S D +K+W L T+
Sbjct: 681 VKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 739
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
GH VN + D L S + D +++WD ++
Sbjct: 740 FGHTNSVNHCRF--SPDDELLASCSADGTLRLWDVRS 774
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
D++ A+ S D+ VK+W + T + H + VNC + + + L +G++D +K+
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 214 WDYQNKTCVQTL 225
WD K C T+
Sbjct: 728 WDLNQKECRNTM 739
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
LDIK A D V CC + ++ + V +W+ T + V +++ V
Sbjct: 651 LDIK----AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 706
Query: 65 FVPRKN--WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
F + N + TGS+D + +++ N E ++ H++ V P L + S D
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766
Query: 123 IKLWNWEKA 131
++LW+ A
Sbjct: 767 LRLWDVRSA 775
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
+D AS D+T++V++ + ++ HE V C + D Y+ + + D+ VK
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIATCSADKKVK 682
Query: 213 IWDYQNKTCVQT 224
IWD V T
Sbjct: 683 IWDSATGKLVHT 694
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 19/188 (10%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVW-----NHETNQNVKSFEVC--DL 58
+ + + ++ V C P + + + +G + +W N + NVK F + D
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 793
Query: 59 PVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNT---LERFHSFEAHSDYVRCVAVHPT 110
P V +W G + +V +F+ +T L H+ H ++ P
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPY 851
Query: 111 QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
+ + ++LWN + GH +V ++ +P D ++F +AS D+T++VW
Sbjct: 852 DHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVW 909
Query: 171 QLGSASPN 178
+ N
Sbjct: 910 ETKKVCKN 917
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Query: 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS 76
+V CC L P ++ +G + + N+ S VR +F +++ S
Sbjct: 970 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1029
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
+D + V+N+ T + + +AH + V+ + LL+ S D +K+WN ++
Sbjct: 1030 EDSVIQVWNWQTGD-YVFLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITG-RIER 1086
Query: 137 VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG 196
F H V+ I+ D F+S S D+T K+W SP L+GH V C +
Sbjct: 1087 DFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 197 GDKPYLISGADDRLVKIWDYQN 218
G L +G D+ ++IW+ +
Sbjct: 1146 G--ILLATGDDNGEIRIWNVSD 1165
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ V+ ET + + + + V F ++I T S D +V +++ T + H+++ H
Sbjct: 646 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 705
Query: 99 SDYVRCVAVHPTQPFLL--TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
S+ V C LL T S+D +KLW+ + C+ GHT+ V +P D+
Sbjct: 706 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDE 763
Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
AS S D T+++W + SA+ K +N ++ + P
Sbjct: 764 LLASCSADGTLRLWDVRSAN-------ERKSINVKRFFLSSEDP 800
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
A F I + D + VF T E+ +AH D V C A ++ T S D
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSASPNFTL 181
+K+W+ ++ H+ V K N+ A+ S D +K+W L T+
Sbjct: 688 VKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 746
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
GH VN + D L S + D +++WD ++
Sbjct: 747 FGHTNSVNHCRF--SPDDELLASCSADGTLRLWDVRS 781
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
D++ A+ S D+ VK+W + T + H + VNC + + + L +G++D +K+
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 214 WDYQNKTCVQTL 225
WD K C T+
Sbjct: 735 WDLNQKECRNTM 746
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
LDIK A D V CC + ++ + V +W+ T + V +++ V
Sbjct: 658 LDIK----AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 713
Query: 65 FVPRKN--WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
F + N + TGS+D + +++ N E ++ H++ V P L + S D
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 773
Query: 123 IKLWNWEKA 131
++LW+ A
Sbjct: 774 LRLWDVRSA 782
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
+D AS D+T++V++ + ++ HE V C + D Y+ + + D+ VK
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIATCSADKKVK 689
Query: 213 IWDYQNKTCVQT 224
IWD V T
Sbjct: 690 IWDSATGKLVHT 701
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 19/188 (10%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVW-----NHETNQNVKSFEVC--DL 58
+ + + ++ V C P + + + +G + +W N + NVK F + D
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 800
Query: 59 PVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNT---LERFHSFEAHSDYVRCVAVHPT 110
P V +W G + +V +F+ +T L H+ H ++ P
Sbjct: 801 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPY 858
Query: 111 QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
+ + ++LWN + GH +V ++ +P D ++F +AS D+T++VW
Sbjct: 859 DHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVW 916
Query: 171 QLGSASPN 178
+ N
Sbjct: 917 ETKKVCKN 924
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 76 SDDMQVCVFNY---NTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
+DD ++ +++ T + H +AH+ V C++ +P F+L T S D + LW+
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
FE H + Q+ +P + AS+ DR + VW L + E E G +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
+ HGG ++P++I S ++D + +IW
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 114 LLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167
LL++SDD + LW+ K + +F GH+ V + + + F S + D+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 168 KVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPY----LISGADDRLVKIWDYQN-K 219
+W S + P+ ++ H VNC+ + PY L +G+ D+ V +WD +N K
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNLK 309
Query: 220 TCVQTLES 227
+ T ES
Sbjct: 310 LKLHTFES 317
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 20/187 (10%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVCDL---PV 60
+D K T S V+ H + S+ + + +W+ +N K + D V
Sbjct: 219 VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEV 278
Query: 61 RAAKFVPRKNWIV-TGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTS 117
F P +I+ TGS D V +++ L+ + H+FE+H D + V P + L +S
Sbjct: 279 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
D + +W+ K Q + GHT + NP + S S D
Sbjct: 339 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Query: 165 RTVKVWQ 171
++WQ
Sbjct: 399 NIXQIWQ 405
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 36 NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94
+GH ++N K + D V AK R+ + T D++V N+N
Sbjct: 74 DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID- 132
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
+AH + + P+ L++SS DM +K+W+ K + + GH V I I +
Sbjct: 133 -QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEK---GVNCVDYYHGGDK 199
N SASLD T+++W+ G+ + T E GVN + + G D+
Sbjct: 191 RNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 237
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 36 NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94
+GH ++N K + D V AK R+ + T D++V N+N
Sbjct: 77 DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID- 135
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
+AH + + P+ L++SS DM +K+W+ K + + GH V I I +
Sbjct: 136 -QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEK---GVNCVDYYHGGDK 199
N SASLD T+++W+ G+ + T E GVN + + G D+
Sbjct: 194 RNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 94 SFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNW----EKAWACQQVFEGHTHYVMQI 148
+ E H+ +V +A QP LL++S D + W +K + F+GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK--PYLISGA 206
+ D SAS D+T+++W + + GH+ V VD DK +ISG+
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI----DKKASXIISGS 126
Query: 207 DDRLVKIWDYQNKTCVQTL 225
D+ +K+W + + C+ TL
Sbjct: 127 RDKTIKVWTIKGQ-CLATL 144
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 9/183 (4%)
Query: 50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
V+SF+ V+ + ++ S D + +++ T E + F H V V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
+++ S D IK+W + C GH +V Q+ + P D+ T SA D
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
+ VK W L GH +N + D + S D + +W+ K T
Sbjct: 176 KXVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 225 LES 227
L +
Sbjct: 234 LSA 236
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 9/184 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R S V+ C L + L++ ++ + +W+ T + + F V + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDML 122
+ I++GS D + V+ + + H+D+V V V P + ++++ +D
Sbjct: 119 ASXIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+K WN + + + F GH + + +P D ASA D + +W L + +TL
Sbjct: 178 VKAWNLNQ-FQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLS 235
Query: 183 GHEK 186
++
Sbjct: 236 AQDE 239
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
I++ +D V +N N + F H+ + + P + ++ D I LWN
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-------GH 184
A + V + +P N + +A+ +KV+ L P + ++ G+
Sbjct: 229 KAXYTL--SAQDEVFSLAFSP--NRYWLAAATATGIKVFSL---DPQYLVDDLRPEFAGY 281
Query: 185 EKGVN--CVDYYHGGDKPYLISGADDRLVKIW 214
K V D L +G D ++++W
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 94 SFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNW----EKAWACQQVFEGHTHYVMQI 148
+ E H+ +V +A QP LL++S D + W +K + F+GH+H V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK--PYLISGA 206
+ D SAS D+T+++W + + GH+ V VD DK +ISG+
Sbjct: 66 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 120
Query: 207 DDRLVKIWDYQNKTCVQTL 225
D+ +K+W + + C+ TL
Sbjct: 121 RDKTIKVWTIKGQ-CLATL 138
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
V+SF+ V+ + ++ S D + +++ T E + F H V V +
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
+++ S D IK+W + C GH +V Q+ + P D+ T SA D
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
+ VK W L GH +N + D + S D + +W+ K + T
Sbjct: 170 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 225 LES 227
L +
Sbjct: 228 LSA 230
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R S V+ C L + L++ ++ + +W+ T + + F V + +
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDML 122
+ I++GS D + V+ + + H+D+V V V P + ++++ +D +
Sbjct: 113 ASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+K WN + + + F GH + + +P D ASA D + +W L + +TL
Sbjct: 172 VKAWNLNQ-FQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Query: 183 GHEK 186
++
Sbjct: 230 AQDE 233
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
I++ +D V +N N + F H+ + + P + ++ D I LWN
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-------GH 184
A + V + +P N + +A+ +KV+ L P + ++ G+
Sbjct: 223 KAMYTL--SAQDEVFSLAFSP--NRYWLAAATATGIKVFSL---DPQYLVDDLRPEFAGY 275
Query: 185 EKGVN--CVDYYHGGDKPYLISGADDRLVKIW 214
K V D L +G D ++++W
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 94 SFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNW----EKAWACQQVFEGHTHYVMQI 148
+ E H+ +V +A QP LL++S D + W +K + F+GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK--PYLISGA 206
+ D SAS D+T+++W + + GH+ V VD DK +ISG+
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 126
Query: 207 DDRLVKIWDYQNKTCVQTL 225
D+ +K+W + + C+ TL
Sbjct: 127 RDKTIKVWTIKGQ-CLATL 144
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
V+SF+ V+ + ++ S D + +++ T E + F H V V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
+++ S D IK+W + C GH +V Q+ + P D+ T SA D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
+ VK W L GH +N + D + S D + +W+ K + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
L +
Sbjct: 234 LSA 236
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R S V+ C L + L++ ++ + +W+ T + + F V + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDML 122
+ I++GS D + V+ + + H+D+V V V P + ++++ +D +
Sbjct: 119 ASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+K WN + + + F GH + + +P D ASA D + +W L + +TL
Sbjct: 178 VKAWNLNQ-FQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 183 GHEK 186
++
Sbjct: 236 AQDE 239
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
I++ +D V +N N + F H+ + + P + ++ D I LWN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-------GH 184
A + V + +P N + +A+ +KV+ L P + ++ G+
Sbjct: 229 KAMYTL--SAQDEVFSLAFSP--NRYWLAAATATGIKVFSL---DPQYLVDDLRPEFAGY 281
Query: 185 EKGVN--CVDYYHGGDKPYLISGADDRLVKIW 214
K V D L +G D ++++W
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 94 SFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNW----EKAWACQQVFEGHTHYVMQI 148
+ E H+ +V +A QP LL++S D + W +K + F+GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK--PYLISGA 206
+ D SAS D+T+++W + + GH+ V VD DK +ISG+
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 126
Query: 207 DDRLVKIWDYQNKTCVQTL 225
D+ +K+W + + C+ TL
Sbjct: 127 RDKTIKVWTIKGQ-CLATL 144
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
V+SF+ V+ + ++ S D + +++ T E + F H V V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
+++ S D IK+W + C GH +V Q+ + P D+ T SA D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
+ VK W L GH +N + D + S D + +W+ K + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
L +
Sbjct: 234 LSA 236
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R S V+ C L + L++ ++ + +W+ T + + F V + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDML 122
+ I++GS D + V+ + + H+D+V V V P + ++++ +D +
Sbjct: 119 ASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+K WN + + + F GH + + +P D ASA D + +W L + +TL
Sbjct: 178 VKAWNLNQ-FQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 183 GHEK 186
++
Sbjct: 236 AQDE 239
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
I++ +D V +N N + F H+ + + P + ++ D I LWN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-------GH 184
A + V + +P N + +A+ +KV+ L P + ++ G+
Sbjct: 229 KAMYTL--SAQDEVFSLAFSP--NRYWLAAATATGIKVFSL---DPQYLVDDLRPEFAGY 281
Query: 185 EKGVN--CVDYYHGGDKPYLISGADDRLVKIW 214
K V D L +G D ++++W
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 94 SFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNW----EKAWACQQVFEGHTHYVMQI 148
+ E H+ +V +A QP LL++S D + W +K + F+GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK--PYLISGA 206
+ D SAS D+T+++W + + GH+ V VD DK +ISG+
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 126
Query: 207 DDRLVKIWDYQNKTCVQTL 225
D+ +K+W + + C+ TL
Sbjct: 127 RDKTIKVWTIKGQ-CLATL 144
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
V+SF+ V+ + ++ S D + +++ T E + F H V V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
+++ S D IK+W + C GH +V Q+ + P D+ T SA D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
+ VK W L GH +N + D + S D + +W+ K + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
L +
Sbjct: 234 LSA 236
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R S V+ C L + L++ ++ + +W+ T + + F V + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDML 122
+ I++GS D + V+ + + H+D+V V V P + ++++ +D +
Sbjct: 119 ASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+K WN + + + F GH + + +P D ASA D + +W L + +TL
Sbjct: 178 VKAWNLNQ-FQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 183 GHEK 186
++
Sbjct: 236 AQDE 239
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
I++ +D V +N N + F H+ + + P + ++ D I LWN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-------GH 184
A + V + +P N + +A+ +KV+ L P + ++ G+
Sbjct: 229 KAMYTL--SAQDEVFSLAFSP--NRYWLAAATATGIKVFSL---DPQYLVDDLRPEFAGY 281
Query: 185 EKGVN--CVDYYHGGDKPYLISGADDRLVKIW 214
K V D L +G D ++++W
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 94 SFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNW----EKAWACQQVFEGHTHYVMQI 148
+ E H+ +V +A QP LL++S D + W +K + F+GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK--PYLISGA 206
+ D SAS D+T+++W + + GH+ V VD DK +ISG+
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 126
Query: 207 DDRLVKIWDYQNKTCVQTL 225
D+ +K+W + + C+ TL
Sbjct: 127 RDKTIKVWTIKGQ-CLATL 144
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
V+SF+ V+ + ++ S D + +++ T E + F H V V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
+++ S D IK+W + C GH +V Q+ + P D+ T SA D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
+ VK W L GH +N + D + S D + +W+ K + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
L +
Sbjct: 234 LSA 236
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R S V+ C L + L++ ++ + +W+ T + + F V + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDML 122
+ I++GS D + V+ + + H+D+V V V P + ++++ +D +
Sbjct: 119 ASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+K WN + + + F GH + + +P D ASA D + +W L + +TL
Sbjct: 178 VKAWNLNQ-FQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 183 GHEK 186
++
Sbjct: 236 AQDE 239
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 10/149 (6%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
I++ +D V +N N + F H+ + + P + ++ D I LWN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL------GSASPNFTLEGHE 185
A + V + +P N + +A+ +KV+ L P F
Sbjct: 229 KAMYTL--SAQDEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAA 284
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ V D L +G D ++++W
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-------PNFTLEGHEKGVNCVD 192
GHT V+ I P ++N AS S D TV VW++ P TLEGH K V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV- 137
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+H + L+S D ++ +WD V TL
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL--EGHEKGVNCVDYYH 195
EGHT V + +P N SA D + VW +G+ + TL + H + VD+
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCV 222
D + + D+ V++ + + T V
Sbjct: 187 --DGALICTSCRDKRVRVIEPRKGTVV 211
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 70 NWIVTGSDDMQVCVFN-------YNTLERFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDM 121
N I +GS+D V V+ E + E H+ V VA HPT Q LL++ D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDN 154
Query: 122 LIKLWN 127
+I +W+
Sbjct: 155 VILVWD 160
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 27/179 (15%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIKLWNWE 129
+V+GS D V V++ H FE H+ VRC+ + + +++T S D + +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDN---------------------NTFASASLDRTVK 168
K + G H + P++N N S S D T+
Sbjct: 236 KESSVPD--HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
VW + + L GH + Y H ++ IS + D ++IWD +N + TL+
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDH--ERKRCISASMDTTIRIWDLENGELMYTLQG 350
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 30/182 (16%)
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N+++TG+DD + V++ + H V + + L++ S D +++W+ +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK-YAHGGILVSGSTDRTVRVWDIK 191
Query: 130 KAWACQQVFEGHTHYVMQI-VINPKDNNTFASASLDRTVKVWQLGSAS------------ 176
K C VFEGH V + ++ K+ + S D T+ VW+L S
Sbjct: 192 KG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 177 ---------PNF--TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
P F L GH V V G ++SG+ D + +WD C+ L
Sbjct: 251 LVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306
Query: 226 ES 227
Sbjct: 307 SG 308
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 33/202 (16%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVFN----------- 85
V VW+ + FE + VR V KN +IVTGS D + V+
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 86 --------YNTLERFHSF----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA 133
++T E F H VR V+ H +++ S D + +W+ +
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQM-K 301
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
C + GHT + + + + SAS+D T+++W L + +TL+GH V +
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 194 YHGGDKPYLISGADDRLVKIWD 215
DK +L+S A D ++ WD
Sbjct: 361 ---SDK-FLVSAAADGSIRGWD 378
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
++K W K + GH V+ + +DN A D+ ++V+ +
Sbjct: 100 FILKNWYNPKFVPQRTTLRGHMTSVIT-CLQFEDNYVITGAD-DKMIRVYDSINKKFLLQ 157
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L GH+ GV + Y HGG L+SG+ DR V++WD + C E
Sbjct: 158 LSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEG 201
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIKLWNWE 129
+V+GS D V V++ H FE H+ VRC+ + + +++T S D + +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDN---------------------NTFASASLDRTVK 168
K + G H + P++N N S S D T+
Sbjct: 236 KESSVPD--HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLI 293
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
VW + + L GH + Y H ++ IS + D ++IWD +N TL+
Sbjct: 294 VWDVAQXKCLYILSGHTDRIYSTIYDH--ERKRCISASXDTTIRIWDLENGELXYTLQG 350
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 30/182 (16%)
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
N+++TG+DD + V++ + H V + + L++ S D +++W+ +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK-YAHGGILVSGSTDRTVRVWDIK 191
Query: 130 KAWACQQVFEGHTHYVMQI-VINPKDNNTFASASLDRTVKVWQLGSAS------------ 176
K C VFEGH V + ++ K+ + S D T+ VW+L S
Sbjct: 192 KG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 177 ---------PNF--TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
P F L GH V V G ++SG+ D + +WD C+ L
Sbjct: 251 LVFHTPEENPYFVGVLRGHXASVRTV----SGHGNIVVSGSYDNTLIVWDVAQXKCLYIL 306
Query: 226 ES 227
Sbjct: 307 SG 308
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
++K W K + GH V+ + +DN A D+ ++V+ +
Sbjct: 100 FILKNWYNPKFVPQRTTLRGHXTSVIT-CLQFEDNYVITGAD-DKXIRVYDSINKKFLLQ 157
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L GH+ GV + Y HGG L+SG+ DR V++WD + C E
Sbjct: 158 LSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEG 201
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 33/202 (16%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVFN----------- 85
V VW+ + FE + VR V KN +IVTGS D + V+
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 86 --------YNTLERFHSF----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA 133
++T E F H VR V+ H +++ S D + +W+ +
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQX-K 301
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
C + GHT + + + + SAS D T+++W L + +TL+GH V +
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Query: 194 YHGGDKPYLISGADDRLVKIWD 215
DK +L+S A D ++ WD
Sbjct: 361 ---SDK-FLVSAAADGSIRGWD 378
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQ 111
+R+ + P + + GS D V ++ ++ E H + V+ VA
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 112 PFLLTSSDDMLIKLWNWEKA---WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
+L T S D + +W +++ + C V + H+ V ++ +P + AS+S D TV+
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVR 178
Query: 169 VWQLGSASPN--FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
+W+ L GHE V D+ L SG+DD V++W Y
Sbjct: 179 IWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 15/174 (8%)
Query: 12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV-----RAAKFV 66
TA ++ P + A ++ V +W E + + ++FE+ L + K V
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGV 113
Query: 67 PRKN---WIVTGSDDMQVCVFNYNT----LERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
N ++ T S D V ++ + E + HS V+ V HP++ L +SS
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 120 DMLIKLW-NWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQ 171
D +++W +++ W C V GH V + + S S D TV+VW+
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-------PNFTLEGHEKGVNCVD 192
GHT V+ I P ++N AS S D TV VW++ P TLEGH K V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV- 137
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+H + L+S D ++ +WD V TL
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL--EGHEKGVNCVDYYH 195
EGHT V + +P N SA D + VW +G+ + TL + H + VD+
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCV 222
D + + D+ V++ + + T V
Sbjct: 187 --DGALICTSCRDKRVRVIEPRKGTVV 211
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 70 NWIVTGSDDMQVCVFN-------YNTLERFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDM 121
N I +GS+D V V+ E + E H+ V VA HPT Q LL++ D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154
Query: 122 LIKLWN 127
+I +W+
Sbjct: 155 VILVWD 160
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+++GS D V+ +L ++ +AH+ V V ++ LT+S D IKLW +K
Sbjct: 117 VISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK 174
Query: 131 AWACQQVFEG-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
+ F G H V + + D+ F S S D +K+ + T EGHE V
Sbjct: 175 V---IKTFSGIHNDVVRHLAV--VDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
C+ GD ++S +DR V+IW +N + Q +
Sbjct: 230 CIKLLPNGD---IVSCGEDRTVRIWSKENGSLKQVI 262
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW-IVTGSDDMQVCVFNYNTLERFHSF 95
GHV +++ T+ + + + + F P + + I++GSDD V +F + +F
Sbjct: 129 GHVFLFDTGTSNGNLTGQARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-------GHTHYVMQI 148
H+ +V V +P ++ D I L+N VFE H+ V +
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGL 245
Query: 149 VINPKDNNTFASASLDRTVKVWQLGS 174
+P D ASAS D+T+K+W + +
Sbjct: 246 TWSP-DGTKIASASADKTIKIWNVAT 270
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG- 140
V N L +S+ H+ V CV+ P L T S D + +WN K + +G
Sbjct: 519 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA 578
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
H + VI + T SA D +K W +
Sbjct: 579 HAMSSVNSVI-WLNETTIVSAGQDSNIKFWNV 609
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 95 FEAHSDYVRCVAVHPTQ------PFLLTSSDDMLIKLWNWEKAWACQQ---------VFE 139
E HSD+V + +Q P L++ S D + +W K + +Q
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIW---KLYEEEQNGYFGIPHKALT 73
Query: 140 GHTHYVMQIVINPKDNNTFA-SASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD 198
GH H+V + ++ + N FA S+S D+T+++W L + + GH+ V V + D
Sbjct: 74 GHNHFVSDLALSQE--NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF--SPD 129
Query: 199 KPYLISGADDRLVKIWD 215
++S +R +K+W+
Sbjct: 130 NRQILSAGAEREIKLWN 146
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN--WEK 130
++ S D + +++ T + F H V VA P +L++ + IKLWN E
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 131 AWACQQVFEGHTHYVMQIVINP--KDNNT-------FASASLDRTVKVWQLGSASPNFTL 181
++ + E H+ +V + +P K N FAS D +KVW + +T
Sbjct: 152 KFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF 209
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
+ HE VN + G Y+ +G D+ + IWD N T Q
Sbjct: 210 KAHESNVNHLSISPNGK--YIATGGKDKKLLIWDILNLTYPQ 249
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 15/176 (8%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ LT + V L + ++S ++ + +W+ T K F V + F P
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEA--HSDYVRCV----------AVHPTQPFLLT 116
I++ + ++ ++N +F S E HSD+V CV V P P+ +
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 117 SSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
D +K+WN + + F+ H V + I+P + A+ D+ + +W +
Sbjct: 190 VGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDI 242
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKA 131
V+G D V V++ + S+ AHS V CVA P + L+ +D I LW+ K
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 132 WACQQV-FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
++ F + +P+ ++TFA V + + + T H + +
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274
Query: 191 VDY-YHGGDKPYLISGADDRLVKIWD 215
+ Y YH P+L S ++D V + D
Sbjct: 275 LAYSYH--SSPFLASISEDCTVAVLD 298
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 110 TQPFLLTSSDDMLIKLWN-WEKAWACQQVFEGHTHY-VMQIVINPKDNNTFASASLDRTV 167
++ +L +SD ++LW EK F + H +++ + D S D +V
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
KVW L + + H VNCV G D +L G D R++ +WD +
Sbjct: 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL-LWDTR 212
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 42/237 (17%)
Query: 18 VKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVC--------DLP------VRA 62
+ D+ P E +ML+ +G + +++ E N + +S+ C D P V
Sbjct: 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104
Query: 63 AKFVPRKNWIVTGSD-DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP------FLL 115
++ P + T S D + V++ NTL+ F ++ V H P +
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF----NFEETVYSHHMSPVSTKHCLVA 160
Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
+ ++L + K+ +C + +GH ++ + +P+ + A+AS D VK+W + A
Sbjct: 161 VGTRGPKVQLCDL-KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219
Query: 176 SPNF-TLEGH----EKGVNCVDYYHGG---------DKPYLISGADDRLVKIWDYQN 218
S TL+ H + V + H G D +L++ D +++W+ N
Sbjct: 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 7/192 (3%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85
+L + +G V +W + N+ + + C D V + V+GS D+ + V++
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 86 YNTLERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
S+ AH+ V CVA P + L+ S+D I LW+ Q+ Y
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Query: 145 V-MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
+ + +P+ + F + TV + S S + H + V + + P+L
Sbjct: 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL-VFSPHSVPFLA 274
Query: 204 SGADDRLVKIWD 215
S ++D + + D
Sbjct: 275 SLSEDCSLAVLD 286
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNTLERFHS 94
NG V + + ++ V S V V F P ++ + S+D + V + + E F S
Sbjct: 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295
Query: 95 FEAHSDYVRCVAVHPTQPFLLTS 117
+AH D+VR P LLT+
Sbjct: 296 -QAHRDFVRDATWSPLNHSLLTT 317
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 89 LERFHSFEAHSDYVRCVAVH---PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
L+ + +A ++ C + + P L + +I++ N C + + GH + +
Sbjct: 55 LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAI 113
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
++ +P+D N S S D +++W + + + +EGH V DY G+K +
Sbjct: 114 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK--I 171
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
+S D +K+W +K + ++
Sbjct: 172 MSCGMDHSLKLWRINSKRMMNAIK 195
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 89 LERFHSFEAHSDYVRCVAVH---PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
L+ + +A ++ C + + P L + +I++ N C + + GH + +
Sbjct: 96 LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAI 154
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
++ +P+D N S S D +++W + + + +EGH V DY G+K +
Sbjct: 155 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK--I 212
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
+S D +K+W +K + ++
Sbjct: 213 MSCGMDHSLKLWRINSKRMMNAIK 236
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 89 LERFHSFEAHSDYVRCVAVH---PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
L+ + +A ++ C + + P L + +I++ N C + + GH + +
Sbjct: 59 LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAI 117
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
++ +P+D N S S D +++W + + + +EGH V DY G+K +
Sbjct: 118 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK--I 175
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
+S D +K+W +K + ++
Sbjct: 176 MSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 89 LERFHSFEAHSDYVRCVAVH---PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
L+ + +A ++ C + + P L + +I++ N C + + GH + +
Sbjct: 60 LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAI 118
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
++ +P+D N S S D +++W + + + +EGH V DY G+K +
Sbjct: 119 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK--I 176
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
+S D +K+W +K + ++
Sbjct: 177 MSCGMDHSLKLWRINSKRMMNAIK 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 89 LERFHSFEAHSDYVRCVAVH---PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
L+ + +A ++ C + + P L + +I++ N C + + GH + +
Sbjct: 59 LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAI 117
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
++ +P+D N S S D +++W + + + +EGH V DY G+K +
Sbjct: 118 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK--I 175
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
+S D +K+W +K + ++
Sbjct: 176 MSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 85 NYNTLERFHSFEAHSDYVRCVAVHP-TQP--FLLTSSDDMLIKLWN-WEKAWACQQVFEG 140
N+N ++ + D + C++ P T P FL+ S ++ W + + +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
HT V+ + + + F +AS D+T K+W L S++ + H+ V + + +
Sbjct: 85 HTGPVLDVCWSDDGSKVF-TASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYS 142
Query: 201 YLISGADDRLVKIWDYQNKTCVQTLE 226
+++G+ D+ +K WD ++ + L+
Sbjct: 143 CVMTGSWDKTLKFWDTRSSNPMMVLQ 168
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 100 DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPKDNNTF 158
+Y+R + P L+ + + +W+ + + I+P F
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
+ S D + VW L + + +GH G +C+D + G K L +G D V+ WD +
Sbjct: 158 SCCS-DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK--LWTGGLDNTVRSWDLRE 214
Query: 219 KTCVQ 223
+Q
Sbjct: 215 GRQLQ 219
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
+Y+ + P D T T+ +W L + +P E C D
Sbjct: 98 NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 203 ISGADDRLVKIWDYQNKTCVQTLES 227
S D + +WD N+T V+ +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQG 181
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD- 198
GH + Q+ N K+ + S S D + VW + TL+GH + +D D
Sbjct: 30 GHERPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV----DC 84
Query: 199 -KPYLISGADDRLVKIWDYQNKTCVQTLES 227
Y ++G+ D +K+WD N CV T +S
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKS 114
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 25 PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG----SDDMQ 80
P + + S + + + + T Q +K +E D P+ A P K +I+ G + D+
Sbjct: 228 PDLTYFITSSRDTNSFLVDVSTLQVLKKYET-DCPLNTAVITPLKEFIILGGGQEAKDVT 286
Query: 81 VCVFNYNTLE-RFH---------SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
N E RF+ + H + VA+ P + +D I+L ++EK
Sbjct: 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346
Query: 131 AW 132
++
Sbjct: 347 SY 348
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 60 VRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVR----CVAVHPTQPFL 114
VR +F P +++T D ++ F+ + E E + V+ ++ +Q F
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 115 LTSSDDMLIKLWNWEKAWACQQ-VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
T D I++W+ + Q+ + Q+ + N S SLD T+ ++LG
Sbjct: 269 -TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
T+ GH KG+ + P LISG+ D + W
Sbjct: 328 HDEVLKTISGHNKGITALTV-----NP-LISGSYDGRIXEW 362
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 29/221 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVW----------NHETNQNVKSFEVCDLP 59
+++ S R+ C L + P ++ + V+ + T+ SF
Sbjct: 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF------ 208
Query: 60 VRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVR----CVAVHPTQPFL 114
VR +F P +++T D ++ F+ + E E + V+ ++ +Q F
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 115 LTSSDDMLIKLWNWEKAWACQQ-VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
T D I++W+ + Q+ + Q+ + N S SLD T+ ++LG
Sbjct: 269 -TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
T+ GH KG+ + P LISG+ D + W
Sbjct: 328 HDEVLKTISGHNKGITALTV-----NP-LISGSYDGRIMEW 362
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 21/176 (11%)
Query: 72 IVTGSDDMQVCVFNYN--TLERFHSFEAHSDYV-RCVAVHPTQPFLLTS-SDDMLIKLWN 127
+ T S D + +F T + + H V R HP +L S S D + +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 128 WEKA-WACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQL---GSASPNFTLE 182
E W+ V H+ V + P + AS D V V + G+ SP ++
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIID 142
Query: 183 GHEKGVNCV---------DYYHGGDKPY--LISGADDRLVKIWDYQNKTCVQTLES 227
H GVN D H G K ++G D LVKIW Y + LES
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 73 VTGSDDMQVCVFNYNTLERFH----SFEAHSDYVRCVAVHPT---QPFLLTSSDDMLIKL 125
VTG D V ++ YN+ + + + E HSD+VR VA PT + ++ + S D +
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233
Query: 126 W 126
W
Sbjct: 234 W 234
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 75/208 (36%), Gaps = 43/208 (20%)
Query: 24 HPTEPWMLASL-YNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRK--NWIVTGSDD 78
HP +LAS Y+G V +W E + + V V + ++ P + ++ S D
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 79 MQVCV--FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
+V V F N +AH+ V + WA
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------------------------WAPAT 157
Query: 137 VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCVD 192
+ E H K++ F + D VK+W+ S + + TLEGH V V
Sbjct: 158 IEEDGEHN------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 193 YYHGG-DKPYLISGADDRLVKIWDYQNK 219
+ + Y+ S + DR IW N+
Sbjct: 212 WSPTVLLRSYMASVSQDRTCIIWTQDNE 239
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 21/176 (11%)
Query: 72 IVTGSDDMQVCVFNYN--TLERFHSFEAHSDYV-RCVAVHPTQPFLLTS-SDDMLIKLWN 127
+ T S D + +F T + + H V R HP +L S S D + +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 128 WEKA-WACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQL---GSASPNFTLE 182
E W+ V H+ V + P + AS D V V + G+ SP ++
Sbjct: 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIID 144
Query: 183 GHEKGVNCV---------DYYHGGDKPY--LISGADDRLVKIWDYQNKTCVQTLES 227
H GVN D H G K ++G D LVKIW Y + LES
Sbjct: 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 200
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 72 IVTGSDDMQVCVFNYNTLERFH----SFEAHSDYVRCVAVHPT---QPFLLTSSDDMLIK 124
VTG D V ++ YN+ + + + E HSD+VR VA PT + +L + S D
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 125 LW 126
+W
Sbjct: 235 IW 236
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 98 HSDYVRCV--AVHPTQPFLLTSSDDMLIKLWNW-EKAWACQQVFEGHTHYVMQIVINP-- 152
HS V V A H P LL +S D + + + E + + H V P
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159
Query: 153 ----------KDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCVDYYHGG- 197
K++ F + D VK+W+ S + + TLEGH V V +
Sbjct: 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219
Query: 198 DKPYLISGADDRLVKIWDYQNK 219
+ YL S + DR IW N+
Sbjct: 220 LRSYLASVSQDRTCIIWTQDNE 241
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 66/175 (37%), Gaps = 21/175 (12%)
Query: 73 VTGSDDMQVCVFNYN--TLERFHSFEAHSDYV-RCVAVHPTQPFLLTS-SDDMLIKLWNW 128
T S D + +F T + + H V R HP +L S S D + +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKE 84
Query: 129 EKA-WACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQL---GSASPNFTLEG 183
E W+ V H+ V + P + AS D V V + G+ SP ++
Sbjct: 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSP-IIIDA 143
Query: 184 HEKGVNCV---------DYYHGGDKPY--LISGADDRLVKIWDYQNKTCVQTLES 227
H GVN D H G K ++G D LVKIW Y + LES
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 72 IVTGSDDMQVCVFNYNTLERFH----SFEAHSDYVRCVAVHPT---QPFLLTSSDDMLIK 124
VTG D V ++ YN+ + + + E HSD+VR VA PT + + + S D
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 125 LW 126
+W
Sbjct: 233 IW 234
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 43/208 (20%)
Query: 24 HPTEPWMLASL-YNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRK--NWIVTGSDD 78
HP +LAS Y+G V +W E + + V V + ++ P + ++ S D
Sbjct: 63 HPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
Query: 79 MQVCV--FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
+V V F N +AH+ V + WA
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------------------------WAPAT 157
Query: 137 VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCVD 192
+ E H K++ F + D VK+W+ S + + TLEGH V V
Sbjct: 158 IEEDGEHN------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 193 YYHGG-DKPYLISGADDRLVKIWDYQNK 219
+ + Y S + DR IW N+
Sbjct: 212 WSPTVLLRSYXASVSQDRTCIIWTQDNE 239
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 21/176 (11%)
Query: 72 IVTGSDDMQVCVFNYN--TLERFHSFEAHSDYV-RCVAVHPTQPFLLTS-SDDMLIKLWN 127
+ T S D + +F T + + H V R HP +L S S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 128 WEKA-WACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQL---GSASPNFTLE 182
E W+ V H+ V + P + AS D V V + G+ SP ++
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIID 142
Query: 183 GHEKGVNCV---------DYYHGGDKPY--LISGADDRLVKIWDYQNKTCVQTLES 227
H GVN D H G K ++G D LVKIW Y + LES
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 73 VTGSDDMQVCVFNYNTLERFH----SFEAHSDYVRCVAVHPT---QPFLLTSSDDMLIKL 125
VTG D V ++ YN+ + + + E HSD+VR VA PT + +L + S D +
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233
Query: 126 W 126
W
Sbjct: 234 W 234
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 98 HSDYVRCV--AVHPTQPFLLTSSDDMLIKLWNW-EKAWACQQVFEGHTHYVMQIVINP-- 152
HS V V A H P LL +S D + + + E + + H V P
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157
Query: 153 ----------KDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCVDYYHGG- 197
K++ F + D VK+W+ S + + TLEGH V V +
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217
Query: 198 DKPYLISGADDRLVKIWDYQNK 219
+ YL S + DR IW N+
Sbjct: 218 LRSYLASVSQDRTCIIWTQDNE 239
>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain
pdb|1Q7F|B Chain B, Brain Tumor Nhl Domain
Length = 286
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 14/180 (7%)
Query: 38 HVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDMQVCVF--NYNTLERFHS 94
+ ++N + Q V+ F L R + IV M+V +F N N L +F
Sbjct: 101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF-G 158
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
H ++ V V+ Q ++ + +K++N+E + Q EG T+Y + + IN
Sbjct: 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG 218
Query: 155 NNTFASASLDRTVKVW----QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
A + + ++ QL SA LE K C D D +++ D RL
Sbjct: 219 EILIADNHNNFNLTIFTQDGQLISA-----LESKVKHAQCFDVALMDDGSVVLASKDYRL 273
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 21/178 (11%)
Query: 72 IVTGSDDMQVCVFNYN--TLERFHSFEAHSDYV-RCVAVHPTQPFLLTS-SDDMLIKLWN 127
+ T S D + +F T + + H V R HP +L S S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 128 WEKA-WACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQL---GSASPNFTLE 182
E W+ V H+ V + P + AS D V V + G+ SP ++
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIID 142
Query: 183 GHEKGVNCV---------DYYHGGDKPY--LISGADDRLVKIWDYQNKTCVQTLESGI 229
H GVN D H G K ++G D LVKIW Y + LES +
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 98 HSDYVRCV--AVHPTQPFLLTSSDDMLIKLWNW-EKAWACQQVFEGHTHYVMQIVINP-- 152
HS V V A H P LL +S D + + + E + + H V P
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157
Query: 153 ----------KDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCVDYYHGG- 197
K++ F + D VK+W+ S + + TLEGH V V +
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217
Query: 198 DKPYLISGADDRLVKIWDYQNK 219
+ YL S + DR IW N+
Sbjct: 218 LRSYLASVSQDRTCIIWTQDNE 239
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 72 IVTGSDDMQVCVFNYNTLERFH----SFEAHSDYVRCVAVHPT---QPFLLTSSDDMLIK 124
VTG D V ++ YN+ + + + E HSD+VR VA PT + +L + S D
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 125 LW 126
+W
Sbjct: 233 IW 234
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 95 FEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-----VMQI 148
E + + AV P + P+L+T SD +IK+WN K +V+ Y V QI
Sbjct: 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNL-KEIIVGEVYSSSLTYDCSSTVTQI 117
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
+ P + + FA +S D + V ++ ++ E K +NC
Sbjct: 118 TMIP-NFDAFAVSSKDGQIIVLKVN----HYQQESEVKFLNC 154
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 197 GDKPYLISGADDRLVKIWDYQ 217
G+ PYLI+G+D ++KIW+ +
Sbjct: 74 GETPYLITGSDQGVIKIWNLK 94
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 65/219 (29%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVH------VWNHETNQNVKSFEVCDLPVR 61
R +T+ S RV + ++L+S +GH+H +H + S EVC L
Sbjct: 194 RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL--- 247
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
++ P + +G +D V V+ E +F H V+ VA P Q +L +
Sbjct: 248 --RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 305
Query: 118 ---SDDMLIKLWN--------------------WEK---------AWACQQV-------- 137
+ D I++WN W +A Q+
Sbjct: 306 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 365
Query: 138 -----FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171
+GHT V+ + ++P D T ASA+ D T+++W+
Sbjct: 366 AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 403
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 81/206 (39%), Gaps = 12/206 (5%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDLP---VRAAKFVPRKNWIVTGSDDMQVCVFNY 86
+LA + V++W+ + ++ ++ + P + + ++ N++ G+ +V +++
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+R + +HS V ++ + L + S I + A GH+ V
Sbjct: 188 QQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 245
Query: 147 QIVINPKDNNTFASASLDRTVKVWQL----GSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
+ P D AS D V VW G P T H+ V V +
Sbjct: 246 GLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 304
Query: 203 ISGA-DDRLVKIWDYQNKTCVQTLES 227
G DR ++IW+ + C+ +++
Sbjct: 305 TGGGTSDRHIRIWNVCSGACLSAVDA 330
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 82 CVFNYNTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
+F Y E+ + + H + + + T LL++SDD +++W+ Q F
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNCFY 286
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
GH+ ++ D S S+D +V++W L
Sbjct: 287 GHSQSIVSASWVGDDK--VISCSMDGSVRLWSL 317
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
N SAS D T+++W G+ + GH + + + G DK +IS + D V++W
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV-GDDK--VISCSMDGSVRLW 315
Query: 215 DYQNKTCV 222
+ T +
Sbjct: 316 SLKQNTLL 323
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 65/219 (29%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVH------VWNHETNQNVKSFEVCDLPVR 61
R +T+ S RV + ++L+S +GH+H +H + S EVC L
Sbjct: 183 RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL--- 236
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
++ P + +G +D V V+ E +F H V+ VA P Q +L +
Sbjct: 237 --RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 294
Query: 118 ---SDDMLIKLWN--------------------WEK---------AWACQQV-------- 137
+ D I++WN W +A Q+
Sbjct: 295 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354
Query: 138 -----FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171
+GHT V+ + ++P D T ASA+ D T+++W+
Sbjct: 355 AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 392
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 81/206 (39%), Gaps = 12/206 (5%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDLP---VRAAKFVPRKNWIVTGSDDMQVCVFNY 86
+LA + V++W+ + ++ ++ + P + + ++ N++ G+ +V +++
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+R + +HS V ++ + L + S I + A GH+ V
Sbjct: 177 QQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234
Query: 147 QIVINPKDNNTFASASLDRTVKVWQL----GSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
+ P D AS D V VW G P T H+ V V +
Sbjct: 235 GLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293
Query: 203 ISGA-DDRLVKIWDYQNKTCVQTLES 227
G DR ++IW+ + C+ +++
Sbjct: 294 TGGGTSDRHIRIWNVCSGACLSAVDA 319
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 65/219 (29%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVH------VWNHETNQNVKSFEVCDLPVR 61
R +T+ S RV + ++L+S +GH+H +H + S EVC L
Sbjct: 103 RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL--- 156
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
++ P + +G +D V V+ E +F H V+ VA P Q +L +
Sbjct: 157 --RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214
Query: 118 ---SDDMLIKLWN--------------------WEK---------AWACQQV-------- 137
+ D I++WN W +A Q+
Sbjct: 215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274
Query: 138 -----FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171
+GHT V+ + ++P D T ASA+ D T+++W+
Sbjct: 275 AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 312
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 12/206 (5%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDLP---VRAAKFVPRKNWIVTGSDDMQVCVFNY 86
+LA + V++W+ + ++ ++ + P + + ++ N++ G+ +V +++
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+R + +HS R ++ L + S I + A GH+ V
Sbjct: 97 QQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154
Query: 147 QIVINPKDNNTFASASLDRTVKVWQL----GSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
+ P D AS D V VW G P T H+ V V +
Sbjct: 155 GLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213
Query: 203 ISGA-DDRLVKIWDYQNKTCVQTLES 227
G DR ++IW+ + C+ +++
Sbjct: 214 TGGGTSDRHIRIWNVCSGACLSAVDA 239
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 7/194 (3%)
Query: 38 HVHVWNHETNQNVKSFEVCDLP--VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
+V+VWN ++ +V + D V + K+ +++ G + V +++ + + +
Sbjct: 114 NVYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
H V C++ + + L + S I + A +GH+ V + D
Sbjct: 173 AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR-SDG 229
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD-DRLVKIW 214
AS D V++W S+ P FT H V V + G D+ + W
Sbjct: 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 215 DYQNKTCVQTLESG 228
+ V T+++G
Sbjct: 290 NAATGARVNTVDAG 303
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 28 PWMLASLYNG------HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT--GSDDM 79
PW L G +H WN T V + + V + + P I++ G D
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDN 327
Query: 80 QVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
+ +++Y++ L + AH V A+ P L T++ D +K W
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 152 PKDNNTFASASL---DRTVKVWQLGSA-SPNFTL-EGHEKGVNCVDYYHGGDKPYLISGA 206
PK++ A+A+ D ++ +W L +A +P TL +GH+KG+ +D+ H D+ L+S
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCH-QDEHLLLSSG 282
Query: 207 DDRLVKIWD 215
D V +W+
Sbjct: 283 RDNTVLLWN 291
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQL----GSASPNFTLEGHEKGVNCVDYYHG 196
H V + +NP + A+AS+D+TVK+W L G AS ++L H VN +
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPD 307
Query: 197 GDK 199
G +
Sbjct: 308 GAR 310
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQL----GSASPNFTLEGHEKGVNCVDYYHG 196
H V + +NP + A+AS+D+TVK+W L G AS ++L H VN +
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPD 307
Query: 197 GDK 199
G +
Sbjct: 308 GAR 310
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQL----GSASPNFTLEGHEKGVNCVDYYHG 196
H V + +NP + A+AS+D+TVK+W L G AS ++L H VN +
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPD 308
Query: 197 GDK 199
G +
Sbjct: 309 GAR 311
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA---WACQQVFEGHTHYVMQIV-INP 152
H D V V + T S D IK++ +K W + H ++ I +P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 153 KDNNTFASASLDRTVKVWQ 171
+ ASAS D+TVK+W+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA---WACQQVFEGHTHYVMQIV-INP 152
H D V V + T S D IK++ +K W + H ++ I +P
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 153 KDNNTFASASLDRTVKVWQ 171
+ ASAS D+TVK+W+
Sbjct: 67 EYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA---WACQQVFEGHTHYVMQIV-INP 152
H D V V + T S D IK++ +K W + H ++ I +P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 153 KDNNTFASASLDRTVKVWQ 171
+ ASAS D+TVK+W+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 17 RVKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLP------VRAAKFVPRK 69
RV + HPT P +A G + +W+++ QN SF P ++ +F +
Sbjct: 74 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQ 132
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
++ + + F+ + ++ F ++ + CV V ++ L T +
Sbjct: 133 LFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL----L 188
Query: 130 KAWACQQVFEGHTHY--VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---H 184
++F+ H V NP+ + A++S+D TVK+W L + + H
Sbjct: 189 LGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH 248
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
EK VN Y++ D L++ ++++
Sbjct: 249 EKPVNAA-YFNPTDSTKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 17 RVKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLP------VRAAKFVPRK 69
RV + HPT P +A G + +W+++ QN SF P ++ +F +
Sbjct: 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQ 133
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
++ + + F+ + ++ F ++ + CV V ++ L T +
Sbjct: 134 LFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL----L 189
Query: 130 KAWACQQVFEGHTHY--VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---H 184
++F+ H V NP+ + A++S+D TVK+W L + + H
Sbjct: 190 LGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH 249
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
EK VN Y++ D L++ ++++
Sbjct: 250 EKPVNAA-YFNPTDSTKLLTTDQRNEIRVY 278
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 158 FASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGD----KPYLISGADDRLVK 212
A+ + +W L + P ++++GH++ +N +D G P +++G+ D VK
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 213 IWDYQNK 219
+WD + K
Sbjct: 143 VWDPRQK 149
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
S+ VR +++HP Q L SS+ + +WA + F + V V DNN +
Sbjct: 667 SEEVRSLSIHPHQNLL--SSEQL---------SWALETAFVDIVNLVSVEVNKATDNNYY 715
Query: 159 ASA 161
ASA
Sbjct: 716 ASA 718
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
S+ VR +++HP Q L SS+ + +WA + F + V V DNN +
Sbjct: 664 SEEVRSLSIHPHQNLL--SSEQL---------SWALETAFVDIVNLVSVEVNKATDNNYY 712
Query: 159 ASA 161
ASA
Sbjct: 713 ASA 715
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 158 FASASLDRTVKVWQLGSASPNFT--LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
A+ S DR+VK++ + + L GHE V V + H L S + DR V IW
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 216 YQNKTCVQTLE 226
+N T ++ E
Sbjct: 88 EENGTWEKSHE 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,761,658
Number of Sequences: 62578
Number of extensions: 321961
Number of successful extensions: 1552
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 379
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)