BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4653
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35605|COPB2_BOVIN Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3
Length = 906
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 198/227 (87%), Positives = 211/227 (92%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKLTARSDRVK DLHPTEPWMLASLYNG V VWNHET VK+FEVCDLPV
Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 55/223 (24%)
Query: 13 ARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWNHETNQ 48
A SD ++C +HPT+P++L S ++ GH H V N + N
Sbjct: 97 AHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNN 156
Query: 49 NV------KSFEVCDLPVRAAKFVPR----------------KNWIVTGSDDMQVCVFNY 86
++ +V L + F K ++++G+DD V +++Y
Sbjct: 157 QFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDY 216
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+ E H+ V C + HP P ++T S+D +++W+ + E +Y M
Sbjct: 217 QNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWH-----SSTYRLESTLNYGM 271
Query: 147 Q---IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ V + + +N A D + +LG P +++ + K
Sbjct: 272 ERVWCVASLRGSNNVA-LGYDEGSIIVKLGREEPAMSMDANGK 313
>sp|Q5R664|COPB2_PONAB Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1
Length = 906
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 198/227 (87%), Positives = 211/227 (92%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKLTARSDRVK DLHPTEPWMLASLYNG V VWNHET VK+FEVCDLPV
Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 55/223 (24%)
Query: 13 ARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWNHETNQ 48
A SD ++C +HPT+P++L S ++ GH H V N + N
Sbjct: 97 AHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNN 156
Query: 49 NV------KSFEVCDLPVRAAKFVPR----------------KNWIVTGSDDMQVCVFNY 86
++ +V L + F K ++++G+DD V +++Y
Sbjct: 157 QFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDY 216
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+ E H+ V C + HP P ++T S+D +++W+ + E +Y M
Sbjct: 217 QNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWH-----SSTYRLESTLNYGM 271
Query: 147 Q---IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ V + + +N A D + +LG P +++ + K
Sbjct: 272 ERVWCVASLRGSNNVA-LGYDEGSIIVKLGREEPAMSMDANGK 313
>sp|O55029|COPB2_MOUSE Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2
Length = 905
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 198/227 (87%), Positives = 211/227 (92%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKLTARSDRVK DLHPTEPWMLASLYNG V VWNHET VK+FEVCDLPV
Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 55/223 (24%)
Query: 13 ARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWNHETNQ 48
A SD ++C +HPT+P++L S ++ GH H V N + N
Sbjct: 97 AHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNN 156
Query: 49 NV------KSFEVCDLPVRAAKFVPR----------------KNWIVTGSDDMQVCVFNY 86
++ +V L + F K ++++G+DD V +++Y
Sbjct: 157 QFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDY 216
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+ E H+ V C + HP P ++T S+D +++W+ + E +Y M
Sbjct: 217 QNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWH-----SSTYRLESTLNYGM 271
Query: 147 Q---IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ V + + +N A D + +LG P +++ + K
Sbjct: 272 ERVWCVASLRGSNNVA-LGYDEGSIIVKLGREEPAMSMDANGK 313
>sp|P35606|COPB2_HUMAN Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2
Length = 906
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 198/227 (87%), Positives = 211/227 (92%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKLTARSDRVK DLHPTEPWMLASLYNG V VWNHET VK+FEVCDLPV
Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 55/223 (24%)
Query: 13 ARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWNHETNQ 48
A SD ++C +HPT+P++L S ++ GH H V N + N
Sbjct: 97 AHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNN 156
Query: 49 NV------KSFEVCDLPVRAAKFVPR----------------KNWIVTGSDDMQVCVFNY 86
++ +V L + F K ++++G+DD V +++Y
Sbjct: 157 QFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDY 216
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+ E H+ V C + HP P ++T S+D +++W+ + E +Y M
Sbjct: 217 QNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWH-----SSTYRLESTLNYGM 271
Query: 147 Q---IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ V + + +N A D + +LG P +++ + K
Sbjct: 272 ERVWCVASLRGSNNVA-LGYDEGSIIVKLGREEPAMSMDANGK 313
>sp|Q4R4I8|COPB2_MACFA Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1
Length = 906
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 198/227 (87%), Positives = 211/227 (92%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKLTARSDRVK DLHPTEPWMLASLYNG V VWNHET VK+FEVCDLPV
Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 55/223 (24%)
Query: 13 ARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWNHETNQ 48
A SD ++C +HPT+P++L S ++ GH H V N + N
Sbjct: 97 AHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNN 156
Query: 49 NV------KSFEVCDLPVRAAKFVPR----------------KNWIVTGSDDMQVCVFNY 86
++ +V L + F K ++++G+DD V +++Y
Sbjct: 157 QFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDY 216
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+ E H+ V C + HP P ++T S+D +++W+ + E +Y M
Sbjct: 217 QNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWH-----SSTYRLESTLNYGM 271
Query: 147 Q---IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ V + + +N A + ++ V +LG P +++ + K
Sbjct: 272 ERVWCVASLRGSNNVALGCDEGSIIV-KLGREEPAMSMDANGK 313
>sp|O35142|COPB2_RAT Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3
Length = 905
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 196/227 (86%), Positives = 209/227 (92%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKLTA SDRVK DLHPTEPWMLASLYNG V VWNHET VK+FEVCDLPV
Sbjct: 1 MPLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQT E
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTPEG 227
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 55/223 (24%)
Query: 13 ARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWNHETNQ 48
A SD ++C +HPT+P++L S ++ GH H V N + N
Sbjct: 97 AHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNN 156
Query: 49 NV------KSFEVCDLPVRAAKFVPR----------------KNWIVTGSDDMQVCVFNY 86
++ +V L + F K ++++G+DD V +++Y
Sbjct: 157 QFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDY 216
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+ E H+ V C HP P ++T S+D +++W+ + E +Y M
Sbjct: 217 QNKTCVQTPEGHAQNVSCATFHPELPIIITGSEDGTVRIWH-----SSTYRLESTLNYGM 271
Query: 147 Q---IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ V + + +N A D + +LG P +++ + K
Sbjct: 272 ERVWCVASLRGSNNVA-LGYDEGSIIVKLGREEPAMSMDANGK 313
>sp|O62621|COPB2_DROME Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2
SV=2
Length = 914
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 193/227 (85%), Positives = 209/227 (92%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPL+LDIKR+LT+RSDRVKC DLHP EPWML +LYNGHVH+ N+E Q VK FEVCD+PV
Sbjct: 1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
R+A+FV RKNWI+TGSDDMQ+ VFNYNTLE+ HSFEAHSDY+RC+AVHPTQP +LTSSDD
Sbjct: 61 RSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLWNWEK WACQ+VFEGHTHYVMQIV NPKDNNTFASASLDRTVKVWQLGS NFT
Sbjct: 121 MLIKLWNWEKMWACQRVFEGHTHYVMQIVFNPKDNNTFASASLDRTVKVWQLGSNFANFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 46/160 (28%)
Query: 13 ARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWNHETNQ 48
A SD ++C +HPT+P +L S ++ GH H V+N + N
Sbjct: 97 AHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFEGHTHYVMQIVFNPKDNN 156
Query: 49 NV------KSFEVCDLPVRAAKFVPR----------------KNWIVTGSDDMQVCVFNY 86
++ +V L A F K ++++G+DD V +++Y
Sbjct: 157 TFASASLDRTVKVWQLGSNFANFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
+ E H+ + V HP P +LT S+D +++W
Sbjct: 217 QNKTCVQTLEGHAQNISAVCFHPELPIVLTGSEDGTVRIW 256
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
+ SD V+CV +HP +P++L + + + + N+E + FE V + N
Sbjct: 13 SRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKD-FEVCDVPVRSARFVAR-KN 70
Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216
+ S D ++V+ + + E H + C+ + +P +++ +DD L+K+W++
Sbjct: 71 WILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHP--TQPLVLTSSDDMLIKLWNW 128
Query: 217 QNKTCVQTLESG 228
+ Q + G
Sbjct: 129 EKMWACQRVFEG 140
>sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' OS=Caenorhabditis elegans
GN=F38E11.5 PE=3 SV=3
Length = 1000
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 177/226 (78%), Positives = 203/226 (89%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLD+KRKL ARSDRVKC DLHP E W+LA+LYNG+VH+WN+ET VKSFEVCD+PV
Sbjct: 1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
RAAKFVPRK+W+VTGSDDM + VFNYNTLER H FEAHSDY+R + VHPT P++++SSDD
Sbjct: 61 RAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
ML+K+W+W+ WA +Q FEGHTHYVMQI INPKDNNTFA+ASLD+TVKVWQ GS PNFT
Sbjct: 121 MLVKMWDWDNKWAMKQSFEGHTHYVMQIAINPKDNNTFATASLDKTVKVWQFGSNVPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
LEGHEKGVNCVDYYHGG+KPY+ISGADD LVKIWDYQNKTCVQTL+
Sbjct: 181 LEGHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLD 226
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
K +I++G+DD V +++Y + + H+ V V HP P ++T S+D ++LW
Sbjct: 198 EKPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPELPLIITGSEDSTVRLW 256
>sp|Q6H8D5|COB22_ORYSJ Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica
GN=Os02g0209100 PE=2 SV=1
Length = 910
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 160/227 (70%), Positives = 194/227 (85%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKL RS+RVK DLHPTEPW+L+SLY+G V +WN++T VKSFEV +LPV
Sbjct: 1 MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
R++KF+ RK WIV G+DDM + V+NYNT+++ FEAH+DY+RCVAVHPTQPF+L+SSDD
Sbjct: 61 RSSKFIARKQWIVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W C Q+FEGH+HYVMQ+ NPKD NTFASASLDRTVKVW LGS PNFT
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L+GH KGVNCVDY+ GGD+PYLI+G+DD+ K+WDYQ K+CVQTLE
Sbjct: 181 LDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEG 227
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 48/169 (28%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEP-------------------WMLASLYNGHVHVWNHE 45
+D + A +D ++C +HPT+P WM ++ GH H
Sbjct: 89 MDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQV 148
Query: 46 T--NQNVKSFEVCDLPVRAAKF----VPRKN----------------------WIVTGSD 77
T ++ +F L R K P N +++TGSD
Sbjct: 149 TFNPKDTNTFASASLD-RTVKVWSLGSPDPNFTLDGHSKGVNCVDYFTGGDRPYLITGSD 207
Query: 78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
D V++Y T + E H+ V V HP P LT S+D ++LW
Sbjct: 208 DQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPITLTGSEDGTVRLW 256
>sp|Q6H8D6|COB23_ORYSJ Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica
GN=Os02g0209000 PE=3 SV=2
Length = 910
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 193/227 (85%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRKL RS+R K DLHPTEPW+L+SLY+G V +WN++T VKSFEV +LPV
Sbjct: 1 MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
R++KF+ RK W+V G+DDM + V+NYNT+++ FEAH+DY+RCVAVHPTQPF+L+SSDD
Sbjct: 61 RSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W C Q+FEGH+HYVMQ+ NPKD NTFASASLDRTVKVW LGS PNFT
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L+GH KGVNCVDY+ GGD+PYLI+G+DD+ K+WDYQ K+CVQTLE
Sbjct: 181 LDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEG 227
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 46/168 (27%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEP-------------------WMLASLYNGHVH----V 41
+D + A +D ++C +HPT+P WM ++ GH H V
Sbjct: 89 MDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQV 148
Query: 42 WNHETNQNVKSFEVCDLPVRAAKF-VPRKN----------------------WIVTGSDD 78
+ + N + D V+ P N +++TGSDD
Sbjct: 149 TFNPKDTNTFASASLDRTVKVWSLGSPDPNFTLDGHSKGVNCVDYFTGGDRPYLITGSDD 208
Query: 79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
V++Y T + E H+ V V HP P +LT S+D ++LW
Sbjct: 209 QTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIILTGSEDGTVRLW 256
>sp|Q8L828|COB23_ARATH Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2
SV=1
Length = 909
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 192/227 (84%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRLDIKRK RS+RVK DLHPTEPW+LASLY+G V +WN++T KSFEV +LPV
Sbjct: 1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
R+AKF+PRK W+V G+DDM + V+NYNT+++ FEAHSDY+RCVAVHPT P++L+SSDD
Sbjct: 61 RSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+WE WAC Q+FEGH+HYVMQ+V NPKD NTFASASLDRT+K+W LGS PNFT
Sbjct: 121 MLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L+ H+KGVNCVDY+ GGDKPYLI+G+DD K+WDYQ K+CVQTL+
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDG 227
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 46/168 (27%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH----- 40
+D + A SD ++C +HPT P++L+S ++ GH H
Sbjct: 89 MDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQV 148
Query: 41 --------------------VWNHETNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDD 78
+WN + + + V + K +++TGSDD
Sbjct: 149 VFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208
Query: 79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
V++Y T + + H+ V V HP P ++T S+D +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2
SV=1
Length = 926
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 192/227 (84%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRL+IKRKL RS+RVK DLHPTEPW+LASLY+G + +WN++T KSFEV +LPV
Sbjct: 1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
R+AKFV RK W+V G+DDM + V+NYNT+++ FEAHSDY+RCVAVHPT P++L+SSDD
Sbjct: 61 RSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+WEK WAC Q+FEGH+HYVMQ+ NPKD NTFASASLDRT+K+W LGS PNFT
Sbjct: 121 MLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L+ H+KGVNCVDY+ GGDKPYLI+G+DD K+WDYQ K+CVQTLE
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 46/168 (27%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH----- 40
+D + A SD ++C +HPT P++L+S ++ GH H
Sbjct: 89 MDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQV 148
Query: 41 --------------------VWNHETNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDD 78
+WN + + + V + K +++TGSDD
Sbjct: 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208
Query: 79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
V++Y T + E H+ V V HP P ++T S+D +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 11 LTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
L A V C D +P+++ + VW+++T V++ E V A F P
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240
Query: 69 KNWIVTGSDDMQVCVFNYNT 88
I+TGS+D V +++ T
Sbjct: 241 LPIIITGSEDGTVRIWHATT 260
>sp|Q5VQ78|COB21_ORYSJ Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica
GN=Os06g0143900 PE=2 SV=1
Length = 907
Score = 358 bits (920), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 152/227 (66%), Positives = 191/227 (84%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRL+IKRK RS+RVK DLHPTEPW+L+SLY+G V +W++++ VKSFEV +LPV
Sbjct: 1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
R+AKF+ RK W+V G+DDM + V+NYNT+++ FEAH+DY+RCVAVHPT P++L+SSDD
Sbjct: 61 RSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+W+K W C Q+FEGH+HYVMQ+ NPKD NTFASASLDRT K+W LGS PNFT
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L+GH+KGVNCVDY+ GGD+PYLI+G+DD K+WDYQ K+CVQTLE
Sbjct: 181 LDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEG 227
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 48/169 (28%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEP-------------------WMLASLYNGHVHVWNHE 45
+D + A +D ++C +HPT P WM ++ GH H
Sbjct: 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQV 148
Query: 46 T--NQNVKSFEVCDLPVRAAKF----VPRKN----------------------WIVTGSD 77
T ++ +F L R K P N +++TGSD
Sbjct: 149 TFNPKDTNTFASASLD-RTTKIWSLGSPDPNFTLDGHQKGVNCVDYFTGGDRPYLITGSD 207
Query: 78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
D V++Y T + E H+ + V HP P ++T S+D +++W
Sbjct: 208 DSTAKVWDYQTKSCVQTLEGHTHNISAVCFHPELPIIITGSEDGTVRIW 256
>sp|Q9CAA0|COB21_ARATH Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2
SV=2
Length = 920
Score = 358 bits (919), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 154/227 (67%), Positives = 190/227 (83%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
MPLRL+IKRK RS+RVK DLHPTEPW+LASLY+G + +WN++T VKSF+V +LPV
Sbjct: 1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPV 60
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
R+AKF+ RK W+V G+DDM + V+NYNT+++ FEAH+DY+RCVAVHPT P++L+SSDD
Sbjct: 61 RSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDD 120
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
MLIKLW+WEK W C Q+FEGH+HYVMQ+ NPKD NTFASASLDRT+K+W LGS PNFT
Sbjct: 121 MLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L+ H KGVNCVDY+ GGDKPYLI+G+DD K+WDYQ K+CVQTLE
Sbjct: 181 LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 71/231 (30%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN-QNVKSFEVCDLPVRAA 63
+D + A +D ++C +HPT P++L+S + + +W+ E + FE V
Sbjct: 89 MDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQV 148
Query: 64 KFVPR---------------------------------------------KNWIVTGSDD 78
F P+ K +++TGSDD
Sbjct: 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDD 208
Query: 79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW------------ 126
V++Y T + E H+ V V+ HP P ++T S+D +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268
Query: 127 -NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS-------ASLDRTVKV 169
E+ WA GH ++VI + + AS+D + K+
Sbjct: 269 YGLERVWAI-----GHIKGSRRVVIGYDEGSIMVKLGREIPVASMDNSGKI 314
>sp|Q54YD8|COPB2_DICDI Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3
SV=1
Length = 1005
Score = 353 bits (906), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 156/227 (68%), Positives = 193/227 (85%), Gaps = 1/227 (0%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC-DLP 59
MPLRLDIK+KL+ RSDRVK D+HPTEPW+LASLY+G+V++WN+ET VKSFEV + P
Sbjct: 1 MPLRLDIKKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNP 60
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
VR A+F+ +K WIVTGSDD + V+NYNT+E+ SFEAH+DY+RC+ VHPT P++L+SSD
Sbjct: 61 VRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADYIRCIIVHPTLPYILSSSD 120
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
DM IKLW++EK W+ QVFEGH+HYVM I NPKD N FA+ASLD+TVKVW + S P+F
Sbjct: 121 DMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHF 180
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
TLEGHEKG+N V+Y+ GG+KPYLISGADD+LVKIWDYQ+KTCVQTLE
Sbjct: 181 TLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQSKTCVQTLE 227
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 53/222 (23%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-------------------LYNGHVH-----VWN- 43
+ A +D ++C +HPT P++L+S ++ GH H WN
Sbjct: 94 KSFEAHADYIRCIIVHPTLPYILSSSDDMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNP 153
Query: 44 HETNQ--------NVK-----------SFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVC 82
+TNQ VK + E + + + ++ K ++++G+DD V
Sbjct: 154 KDTNQFATASLDKTVKVWSINSPHPHFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVK 213
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
+++Y + + E HS+ V V HP P +L+ S+D +KLW+ + E
Sbjct: 214 IWDYQSKTCVQTLEGHSNNVSVVCYHPELPLILSGSEDGTVKLWH-----SSTYRLERTL 268
Query: 143 HYVMQIV--INPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+Y M V +N + F D V ++G P +++
Sbjct: 269 NYGMGFVWSMNFLRGSNFIGLGYDDGTVVLKIGKNKPPVSMD 310
>sp|O42937|COPB2_SCHPO Probable coatomer subunit beta' OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec27 PE=3 SV=2
Length = 796
Score = 310 bits (795), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 136/225 (60%), Positives = 170/225 (75%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
+RLD +RKL + ++RVK D HPTEPW++AS YNG V +WN+ T V+SF++ D+P+RA
Sbjct: 2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRA 61
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
F+ RKNW V GSDD QV V+NYNT E+ FEAH DY+R + VHPTQPFLLTSSDDM
Sbjct: 62 CAFIARKNWFVCGSDDFQVRVYNYNTGEKVTQFEAHPDYIRALVVHPTQPFLLTSSDDMT 121
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
IK +NW+ +W C Q FEGH+ YVM + INPKD NTFAS+ LD TVKVW GS+ NFTL+
Sbjct: 122 IKCFNWDMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTLQ 181
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
H++GVN V+YY GDKPYLI+ DD L+K+WDYQ K CV+ LE
Sbjct: 182 AHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQTKACVRILEG 226
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 32 ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVCVFNYNTL 89
+S +G V VW+ ++ + + D V + P K +++T DD + V++Y T
Sbjct: 159 SSCLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQTK 218
Query: 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV 149
E H++ V H P +++ S+D +K+W+ +++ + + I
Sbjct: 219 ACVRILEGHTNNVSFAFFHSKFPIIISGSEDGTVKIWH-TLSYSLIKSYNFSLDRAWCIA 277
Query: 150 INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
N +N + D + + LG P+ T++ K V
Sbjct: 278 QNK--DNGLVTVGFDNGLITFSLGRDEPSVTMDSSGKVV 314
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 11 LTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
L A V + +P +P+++ + + + VW+++T V+ E V A F +
Sbjct: 180 LQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQTKACVRILEGHTNNVSFAFFHSK 239
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
I++GS+D V +++ + S+ D C+A + + D+ LI
Sbjct: 240 FPIIISGSEDGTVKIWHTLSYSLIKSYNFSLDRAWCIAQNKDNGLVTVGFDNGLITF 296
>sp|P41811|COPB2_YEAST Coatomer subunit beta' OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC27 PE=1 SV=1
Length = 889
Score = 309 bits (791), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
++LDIK+ + RSDRVK D HPTEPW+L +LY+G V +WN+ET V+S +V + PVRA
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
KF+ RKNWI+ GSDD ++ VFNYNT E+ FEAH DY+R +AVHPT+P++L+ SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
+KLWNWE WA +Q FEGH H+VM + NPKD +TFAS LDRTVKVW LG ++PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLE
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 18 VKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-----PRKNW 71
V C +P +P AS + V VW+ Q+ +F + R +V P K +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++T SDD+ + +++Y T + E H V HPT P +++ S+D +K+WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN-SST 259
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+ ++ I +P + ++ D V LG+ P +L+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2
SV=1
Length = 1218
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 31/232 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S+RVK HP PW+LASL++G + +W++ + F+ + PVR F +
Sbjct: 4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY T + H DY+R V H P+++++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG-----SASP------- 177
+ C V GH HYVM +PK+ + SASLD+TV+VW +G SASP
Sbjct: 124 -SRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALKKKSASPADDLMRF 181
Query: 178 ---------------NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ LEGH++GVN ++ P ++SGADDR VK+W
Sbjct: 182 SQMNSDLFGGVDAIVKYVLEGHDRGVNWASFHP--TLPLIVSGADDRQVKLW 231
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S+ V+ ++ HP +P++L S +I+LW++ + F+ H V + +
Sbjct: 5 FETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDR-FDEHEGPVRGVHFH-NS 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW + FTL GH + V ++H + P+++S +DD+ ++IW
Sbjct: 63 QPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHH--ENPWIVSASDDQTIRIW 120
Query: 215 DYQNKTCVQTL 225
++Q++TC+ L
Sbjct: 121 NWQSRTCISVL 131
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 31/189 (16%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L D ++ H PW++++ + + +WN ++ + + V A F P+++
Sbjct: 89 LLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148
Query: 71 WIVTGSDDMQVCVFNYNTLE-----------RF----------------HSFEAHSDYVR 103
+V+ S D V V++ L+ RF + E H V
Sbjct: 149 LVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDLFGGVDAIVKYVLEGHDRGVN 208
Query: 104 CVAVHPTQPFLLTSSDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
+ HPT P +++ +DD +KLW N KAW GH + V ++ + K + S
Sbjct: 209 WASFHPTLPLIVSGADDRQVKLWRMNETKAWEV-DTLRGHMNNVSSVMFHAK-QDIIVSN 266
Query: 162 SLDRTVKVW 170
S D++++VW
Sbjct: 267 SEDKSIRVW 275
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN----------------HETNQNVKSFE 54
LT + V C HP E ++++ + V VW+ + N F
Sbjct: 131 LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDLFG 190
Query: 55 VCDLPVRA-----------AKFVPRKNWIVTGSDDMQVCVFNYNTLERFH--SFEAHSDY 101
D V+ A F P IV+G+DD QV ++ N + + + H +
Sbjct: 191 GVDAIVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN 250
Query: 102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
V V H Q ++++S+D I++W+ K Q H + + + ++P+ N +A
Sbjct: 251 VSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWI-LAVHPEIN--LLAA 307
Query: 162 SLDRTVKVWQLGSASPNFTLEG 183
D + V++L P F L G
Sbjct: 308 GHDNGMIVFKLERERPAFALSG 329
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3
SV=1
Length = 1221
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 125/232 (53%), Gaps = 31/232 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K ++ RVK HPT PW+LASL++G +H++++ ++ F+ + PVR F +
Sbjct: 4 KFETKASRVKGLSFHPTRPWILASLHSGSIHLYDYRIKTLLEKFDEHEGPVRGINFHMTQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY + + H DY+R V H P++++SSDDM+I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWIVSSSDDMVIRIWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS--------------- 174
+ C GH HYVM + +PKD + SASLD+T+++W +
Sbjct: 124 -SRTCIAELNGHNHYVMSALFHPKD-DLVVSASLDQTIRIWDISGLKKKMTTVKPYREND 181
Query: 175 ------------ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
S +LEGH++GVN ++ +PY++S +DD VK+W
Sbjct: 182 PMRLQDELFGTDISVRLSLEGHDRGVNWASFH--PTQPYIVSASDDHQVKLW 231
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN 151
+ FE + V+ ++ HPT+P++L S I L+++ ++ F+ H V I +
Sbjct: 2 LYKFETKASRVKGLSFHPTRPWILASLHSGSIHLYDYRIKTLLEK-FDEHEGPVRGINFH 60
Query: 152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLV 211
F S D +KVW FTL+GH+ + V+++ + P+++S +DD ++
Sbjct: 61 -MTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHR--EAPWIVSSSDDMVI 117
Query: 212 KIWDYQNKTCVQTL 225
+IW++Q++TC+ L
Sbjct: 118 RIWNWQSRTCIAEL 131
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 52 SFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ 111
S E D V A F P + +IV+ SDD QV ++ N +F H + V C HP Q
Sbjct: 199 SLEGHDRGVNWASFHPTQPYIVSASDDHQVKLWRMND-PIVDTFRGHYNNVSCALFHPRQ 257
Query: 112 PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171
++++S+D I++W+ K + H + + +P + N FA A D + V++
Sbjct: 258 DLIISNSEDKTIRVWDIIKKSTVHMIRRDHDRF-WTLASHP-NQNLFA-AGHDSGMIVFK 314
Query: 172 LGSASPNFTLEG-------HEKGVNCVDYYHG 196
L P F G +K N D+ G
Sbjct: 315 LERERPLFVQNGDSGVFFLKKKNFNSFDFQAG 346
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 2 PLRL-------DIKRKLTARS-DR-VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS 52
P+RL DI +L+ DR V HPT+P+++++ + V +W + V +
Sbjct: 182 PMRLQDELFGTDISVRLSLEGHDRGVNWASFHPTQPYIVSASDDHQVKLWRM-NDPIVDT 240
Query: 53 FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP 112
F V A F PR++ I++ S+D + V++ H D +A HP Q
Sbjct: 241 FRGHYNNVSCALFHPRQDLIISNSEDKTIRVWDIIKKSTVHMIRRDHDRFWTLASHPNQN 300
Query: 113 FLLTSSDDMLI 123
D +I
Sbjct: 301 LFAAGHDSGMI 311
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica
GN=Os09g0127800 PE=2 SV=1
Length = 1218
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S+RVK HP PW+LASL++G + +W++ + F+ D PVR F +
Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY T + H DY+R V H P+++++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS-----ASP------- 177
+ C V GH HYVM +PK+ + SASLD+TV+VW +G+ SP
Sbjct: 124 -SRTCVAVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181
Query: 178 ---------------NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ LEGH++GVN ++ P ++SGADDR VK+W
Sbjct: 182 TQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHP--TLPLIVSGADDRQVKLW 231
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S+ V+ ++ HP +P++L S +I++W++ + F+ H V + +
Sbjct: 5 FETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDR-FDEHDGPVRGVHFHAT- 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW + FTL GH + V ++H + P+++S +DD+ ++IW
Sbjct: 63 QPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHH--EYPWIVSASDDQTIRIW 120
Query: 215 DYQNKTCVQTL 225
++Q++TCV L
Sbjct: 121 NWQSRTCVAVL 131
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 49/242 (20%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN----------------HETNQNVKSFE 54
LT + V C HP E ++++ + V VW+ T N F
Sbjct: 131 LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFG 190
Query: 55 VCDLPVRA-----------AKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFEAHSDY 101
D V+ A F P IV+G+DD QV ++ N + + H +
Sbjct: 191 GVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNN 250
Query: 102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
V CV H Q ++++S+D I++W+ K Q H + + + +P+ N +A
Sbjct: 251 VSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWI-LAAHPEMN--LLAA 307
Query: 162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221
D + V++L P F++ G + V Y DR ++ ++Y +
Sbjct: 308 GHDNGMIVFKLERERPAFSVSG-----DTVFY------------VKDRFLRFFEYSTQKE 350
Query: 222 VQ 223
VQ
Sbjct: 351 VQ 352
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 127/243 (52%), Gaps = 37/243 (15%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
+++ K +RS R K HPT+PW+L SL+NG + +W++ + F+ D PVR
Sbjct: 1 MEMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIA 60
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
F P + V+G DD +V V+NY + + S H DYVR H P++L+ SDD I+
Sbjct: 61 FHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIR 120
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW-----QLGSASP-- 177
+WNW+ + C + GH+HYVM +P + + SASLD+TV+VW ++ +A+P
Sbjct: 121 IWNWQ-SRNCIAILTGHSHYVMCAAFHPSE-DLIVSASLDQTVRVWDISGLRMKNAAPVS 178
Query: 178 --------------------------NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLV 211
F LEGH++GVN ++ P ++S DDRLV
Sbjct: 179 MSLEDQLAQAHNSISNDLFGSTDAIVKFVLEGHDRGVNWCAFH--PTLPLILSAGDDRLV 236
Query: 212 KIW 214
K+W
Sbjct: 237 KLW 239
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
+E FE+ S + VA HPTQP++LTS + I+LW++ + F+GH V I
Sbjct: 1 MEMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDR-FDGHDGPVRGI 59
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
+P F S D V VW S F+L GH V ++H + P+++S +DD
Sbjct: 60 AFHPT-QPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHH--EYPWILSCSDD 116
Query: 209 RLVKIWDYQNKTCVQTL 225
+ ++IW++Q++ C+ L
Sbjct: 117 QTIRIWNWQSRNCIAIL 133
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 37/197 (18%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L D V+ C H PW+L+ + + +WN ++ + V A F P ++
Sbjct: 91 LCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSED 150
Query: 71 WIVTGSDDMQVCVFNYNTL-------------------------ERFHS--------FEA 97
IV+ S D V V++ + L + F S E
Sbjct: 151 LIVSASLDQTVRVWDISGLRMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEG 210
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW--EKAWACQQVFEGHTHYVMQIVINPKDN 155
H V A HPT P +L++ DD L+KLW KAW GH + V + +P
Sbjct: 211 HDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTC-RGHFNNVSCCLFHPH-Q 268
Query: 156 NTFASASLDRTVKVWQL 172
SAS D+T++VW L
Sbjct: 269 ELILSASEDKTIRVWDL 285
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 43/218 (19%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN--------------------------- 43
LT S V C HP+E ++++ + V VW+
Sbjct: 133 LTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVSMSLEDQLAQAHNSI 192
Query: 44 -----HETNQNVK-SFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSF 95
T+ VK E D V F P I++ DD V ++ + +
Sbjct: 193 SNDLFGSTDAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTC 252
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
H + V C HP Q +L++S+D I++W+ + A Q F I ++PK
Sbjct: 253 RGHFNNVSCCLFHPHQELILSASEDKTIRVWDLNRRTAV-QTFRRDNDRFWFITVHPK-L 310
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
N FA+A D V V++L P H +N + Y
Sbjct: 311 NLFAAAH-DSGVMVFKLERERP-----AHALNINTLLY 342
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica
GN=Os03g0711400 PE=2 SV=1
Length = 1218
Score = 150 bits (379), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S+RVK HP PW+LASL++G + +W++ + F+ D PVR F +
Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY T + H DY+R V H P+++++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS-----ASP------- 177
+ C V GH HYVM +PK+ + SASLD+TV+VW +G+ SP
Sbjct: 124 -SRTCVAVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181
Query: 178 ---------------NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ LEGH++GVN ++ P ++SGADDR VK+W
Sbjct: 182 TQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHP--TLPLIVSGADDRQVKLW 231
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S+ V+ ++ HP +P++L S +I++W++ + F+ H V + +
Sbjct: 5 FETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDR-FDEHDGPVRGVHFHAT- 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW + FTL GH + V ++H + P+++S +DD+ ++IW
Sbjct: 63 QPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHH--EYPWIVSASDDQTIRIW 120
Query: 215 DYQNKTCVQTL 225
++Q++TCV L
Sbjct: 121 NWQSRTCVAVL 131
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN----------------HETNQNVKSFE 54
LT + V C HP E ++++ + V VW+ T N F
Sbjct: 131 LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFG 190
Query: 55 VCDLPVRA-----------AKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFEAHSDY 101
D V+ A F P IV+G+DD QV ++ N + + H +
Sbjct: 191 GVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNN 250
Query: 102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
V CV H Q ++++S+D I++W+ K Q H + + + +P+ N +A
Sbjct: 251 VSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWI-LSAHPEMN--LLAA 307
Query: 162 SLDRTVKVWQLGSASPNFTLEG 183
D + V++L P F++ G
Sbjct: 308 GHDSGMIVFKLERERPAFSVSG 329
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica
GN=Os03g0711500 PE=2 SV=1
Length = 1218
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 31/232 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S+RVK HP PW+LASL++G + +W++ + F+ D PVR F +
Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY T + H DY+R V H P+++++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG-----SASP------- 177
+ C V GH HYVM +PK+ + SASLD+TV+VW + S SP
Sbjct: 124 -SRTCVAVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDISALRKKSVSPADDILRL 181
Query: 178 ---------------NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ LEGH++GVN ++ P ++SGADDR VKIW
Sbjct: 182 TQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHP--TLPLIVSGADDRQVKIW 231
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S+ V+ ++ HP +P++L S +I++W++ + F+ H V + +
Sbjct: 5 FETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDR-FDEHDGPVRGVHFHAT- 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW + FTL GH + V ++H + P+++S +DD+ ++IW
Sbjct: 63 QPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHH--ECPWIVSASDDQTIRIW 120
Query: 215 DYQNKTCVQTL 225
++Q++TCV L
Sbjct: 121 NWQSRTCVAVL 131
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN----------------HETNQNVKSFE 54
LT + V C HP E ++++ + V VW+ T N F
Sbjct: 131 LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDISALRKKSVSPADDILRLTQMNTDLFG 190
Query: 55 VCDLPVRA-----------AKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFEAHSDY 101
D V+ A F P IV+G+DD QV ++ N + + H +
Sbjct: 191 GVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWEVDTLRGHMNN 250
Query: 102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
V CV H Q ++++S+D I++W+ K Q H + + + +P+ N +A
Sbjct: 251 VSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWI-LSAHPEMN--LLAA 307
Query: 162 SLDRTVKVWQLGSASPNFTLEG 183
D + V++L P F++ G
Sbjct: 308 GHDSGMIVFKLERERPAFSVSG 329
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1
SV=2
Length = 1216
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 31/232 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S+RVK HP PW+LASL++G + +W++ + F+ + PVR F +
Sbjct: 4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY + H DY+R V H P+++++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG-----SASP------- 177
+ C V GH HYVM +PK+ + SASLD+TV+VW +G + SP
Sbjct: 124 -SRTCVSVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDIMRL 181
Query: 178 ---------------NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ LEGH++GVN ++ P ++SGADDR VK+W
Sbjct: 182 TQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLW 231
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S+ V+ ++ HP +P++L S +I+LW++ + F+ H V + +
Sbjct: 5 FETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDR-FDEHEGPVRGVHFH-NS 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW + FTL GH + V ++H + P+++S +DD+ ++IW
Sbjct: 63 QPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIW 120
Query: 215 DYQNKTCVQTL 225
++Q++TCV L
Sbjct: 121 NWQSRTCVSVL 131
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN----------------HETNQNVKSFE 54
LT + V C HP E ++++ + V VW+ T N F
Sbjct: 131 LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMRLTQMNSDLFG 190
Query: 55 VCDLPVRA-----------AKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFEAHSDY 101
D V+ A F P IV+G+DD QV ++ N + + H +
Sbjct: 191 GVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN 250
Query: 102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
V V H Q ++++S+D I++W+ K Q H + + + ++P+ N +A
Sbjct: 251 VSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWI-LAVHPEMN--LLAA 307
Query: 162 SLDRTVKVWQLGSASPNFTLEG 183
D + V++L P F L G
Sbjct: 308 GHDSGMIVFKLERERPAFALSG 329
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 10/134 (7%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----VR 61
+K L V HPT P +++ + V +W K++EV L V
Sbjct: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM---NETKAWEVDTLRGHMNNVS 252
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
+ F +++ IV+ S+D + V++ +F D +AVHP L D
Sbjct: 253 SVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAVHPEMNLLAAGHDSG 312
Query: 122 LI--KLWNWEKAWA 133
+I KL A+A
Sbjct: 313 MIVFKLERERPAFA 326
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2
Length = 1224
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 32/233 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S RVK HP PW+L SL+NG + +W++ + F+ D PVR F ++
Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY + H DY+R H P++L++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL-GSASPNFT-------- 180
+ C V GH HYVM +P + + SASLD+TV+VW + G N +
Sbjct: 124 -SRTCVCVLTGHNHYVMCAQFHPSE-DLVVSASLDQTVRVWDISGLRKKNLSPGAVESDV 181
Query: 181 -------------------LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
LEGH++GVN ++ P ++SGADDR VKIW
Sbjct: 182 RGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHP--TMPLIVSGADDRQVKIW 232
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S V+ ++ HP +P++LTS + +I+LW++ + F+ H V I + K
Sbjct: 5 FETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDK-FDEHDGPVRGIDFH-KQ 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW FTL GH + ++H + P+++S +DD+ +++W
Sbjct: 63 QPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHH--EYPWILSASDDQTIRVW 120
Query: 215 DYQNKTCVQTL 225
++Q++TCV L
Sbjct: 121 NWQSRTCVCVL 131
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 62/276 (22%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L D ++ H PW+L++ + + VWN ++ V + V A+F P ++
Sbjct: 89 LLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSED 148
Query: 71 WIVTGSDDMQVCVFNYNTLERF----------------------------HSFEAHSDYV 102
+V+ S D V V++ + L + H E H V
Sbjct: 149 LVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGV 208
Query: 103 RCVAVHPTQPFLLTSSDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160
A HPT P +++ +DD +K+W N KAW GH + V V +P+ S
Sbjct: 209 NWAAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTC-RGHYNNVSCAVFHPR-QELILS 266
Query: 161 ASLDRTVKVWQLG------------------SASPNFTL--EGHEKGVNCVDYYHGGDKP 200
S D++++VW + +A PN L GH+ G+ + + ++P
Sbjct: 267 NSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGM--IVFKLERERP 324
Query: 201 -YLISG-----ADDRLVKIWDYQNK--TCVQTLESG 228
Y + G DR ++ D+ + V L SG
Sbjct: 325 AYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG 360
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 13/180 (7%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----VR 61
+K L V HPT P +++ + V +W + K++EV V
Sbjct: 197 VKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNES---KAWEVDTCRGHYNNVS 253
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
A F PR+ I++ S+D + V++ + +F D +A HP D
Sbjct: 254 CAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGG 313
Query: 122 LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
+I ++ E+ V HYV + D N+ S D V + GS P F +
Sbjct: 314 MI-VFKLERERPAYAVHGNMLHYVKDRFLRQLDFNS----SKDVAVMQLRSGSKFPVFNM 368
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1
Length = 1224
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 32/233 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S RVK HP PW+L SL+NG + +W++ + F+ D PVR F ++
Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY + H DY+R H P++L++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL-GSASPNFT-------- 180
+ C V GH HYVM +P + + SASLD+TV+VW + G N +
Sbjct: 124 -SRTCVCVLTGHNHYVMCAQFHPSE-DLVVSASLDQTVRVWDISGLRKKNLSPGAVESDV 181
Query: 181 -------------------LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
LEGH++GVN ++ P ++SGADDR VKIW
Sbjct: 182 RGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHP--TMPLIVSGADDRQVKIW 232
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S V+ ++ HP +P++LTS + +I+LW++ + F+ H V I + K
Sbjct: 5 FETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDK-FDEHDGPVRGIDFH-KQ 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW FTL GH + ++H + P+++S +DD+ +++W
Sbjct: 63 QPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHH--EYPWILSASDDQTIRVW 120
Query: 215 DYQNKTCVQTL 225
++Q++TCV L
Sbjct: 121 NWQSRTCVCVL 131
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 62/276 (22%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L D ++ H PW+L++ + + VWN ++ V + V A+F P ++
Sbjct: 89 LLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSED 148
Query: 71 WIVTGSDDMQVCVFNYNTLERF----------------------------HSFEAHSDYV 102
+V+ S D V V++ + L + H E H V
Sbjct: 149 LVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGV 208
Query: 103 RCVAVHPTQPFLLTSSDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160
A HPT P +++ +DD +K+W N KAW GH + V V +P+ S
Sbjct: 209 NWAAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTC-RGHYNNVSCAVFHPR-QELILS 266
Query: 161 ASLDRTVKVWQLG------------------SASPNFTL--EGHEKGVNCVDYYHGGDKP 200
S D++++VW + +A PN L GH+ G+ + + ++P
Sbjct: 267 NSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGM--IVFKLERERP 324
Query: 201 -YLISG-----ADDRLVKIWDYQNK--TCVQTLESG 228
Y + G DR ++ D+ + V L SG
Sbjct: 325 AYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG 360
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 13/180 (7%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----VR 61
+K L V HPT P +++ + V +W + K++EV V
Sbjct: 197 VKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNES---KAWEVDTCRGHYNNVS 253
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
A F PR+ I++ S+D + V++ + +F D +A HP D
Sbjct: 254 CAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGG 313
Query: 122 LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
+I ++ E+ V HYV + D N+ S D V + GS P F++
Sbjct: 314 MI-VFKLERERPAYAVHGNMLHYVKDRFLRQLDFNS----SKDVAVMQLRSGSKFPVFSM 368
>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2
Length = 1224
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 32/233 (13%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K +S RVK HP PW+L SL+NG + +W++ + F+ D PVR F ++
Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQ 63
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+G DD ++ V+NY + H DY+R H P++L++SDD I++WNW+
Sbjct: 64 PLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL-GSASPNFT-------- 180
+ C V GH HYVM +P + + SASLD+TV+VW + G N +
Sbjct: 124 -SRTCVCVLTGHNHYVMCAQFHPTE-DLVVSASLDQTVRVWDISGLRKKNLSPGAVESDV 181
Query: 181 -------------------LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
LEGH++GVN ++ P ++SGADDR VKIW
Sbjct: 182 RGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHP--TMPLIVSGADDRQVKIW 232
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
FE S V+ ++ HP +P++LTS + +I+LW++ + F+ H V I + K
Sbjct: 5 FETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDK-FDEHDGPVRGIDFH-KQ 62
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
F S D +KVW FTL GH + ++H + P+++S +DD+ +++W
Sbjct: 63 QPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHH--EYPWILSASDDQTIRVW 120
Query: 215 DYQNKTCVQTL 225
++Q++TCV L
Sbjct: 121 NWQSRTCVCVL 131
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 62/276 (22%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L D ++ H PW+L++ + + VWN ++ V + V A+F P ++
Sbjct: 89 LLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTED 148
Query: 71 WIVTGSDDMQVCVFNYNTLERF----------------------------HSFEAHSDYV 102
+V+ S D V V++ + L + H E H V
Sbjct: 149 LVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGV 208
Query: 103 RCVAVHPTQPFLLTSSDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160
A HPT P +++ +DD +K+W N KAW GH + V V +P+ S
Sbjct: 209 NWAAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTC-RGHYNNVSCAVFHPR-QELILS 266
Query: 161 ASLDRTVKVWQLG------------------SASPNFTL--EGHEKGVNCVDYYHGGDKP 200
S D++++VW + +A PN L GH+ G+ + + ++P
Sbjct: 267 NSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGM--IVFKLERERP 324
Query: 201 -YLISG-----ADDRLVKIWDYQNK--TCVQTLESG 228
Y + G DR ++ D+ + V L SG
Sbjct: 325 AYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG 360
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 13/180 (7%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----VR 61
+K L V HPT P +++ + V +W + K++EV V
Sbjct: 197 VKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNES---KAWEVDTCRGHYNNVS 253
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
A F PR+ I++ S+D + V++ + +F D +A HP D
Sbjct: 254 CAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGG 313
Query: 122 LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
+I ++ E+ V HYV + D N+ S D V + GS P F +
Sbjct: 314 MI-VFKLERERPAYAVHGNMLHYVKDRFLRQLDFNS----SKDVAVMQLRSGSKFPVFNM 368
>sp|P53622|COPA_YEAST Coatomer subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COP1 PE=1 SV=2
Length = 1201
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 38/237 (16%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
K ++S R K HP+ PW+L +L++ + +W++ + FE + PVR F P +
Sbjct: 6 KFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQ 65
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
V+ DD + V++ +T + ++ H DYVR V H P+++++SDD I++WNW+
Sbjct: 66 PIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQ 125
Query: 130 --KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW----------------- 170
K AC GH H+VM +P D + SASLD T+++W
Sbjct: 126 NRKEIAC---LTGHNHFVMCAQFHPTD-DLIVSASLDETIRIWDISGLRKRHSAPGTSSF 181
Query: 171 -------------QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
LG F LEGH +GVN ++ P ++SG+DDR VK+W
Sbjct: 182 EEQMSAQQNLLDGSLGDCVVKFILEGHTRGVNWASFH--PTLPLIVSGSDDRQVKLW 236
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
++ FE+ S + +A HP++P++L + I+LW++ + FE H V +
Sbjct: 1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHR-FEDHEGPVRGL 59
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
+P F SA D T+KVW L + +TL GH V V ++H + P++IS +DD
Sbjct: 60 DFHPT-QPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTV-FFH-RELPWIISASDD 116
Query: 209 RLVKIWDYQNKTCVQTL 225
+ ++IW++QN+ + L
Sbjct: 117 QTIRIWNWQNRKEIACL 133
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 34/199 (17%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
LT D V+ H PW++++ + + +WN + + + + V A+F P +
Sbjct: 91 LTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQNRKEIACLTGHNHFVMCAQFHPTDD 150
Query: 71 WIVTGSDDMQVCVFNYNTLERFHS------------------------------FEAHSD 100
IV+ S D + +++ + L + HS E H+
Sbjct: 151 LIVSASLDETIRIWDISGLRKRHSAPGTSSFEEQMSAQQNLLDGSLGDCVVKFILEGHTR 210
Query: 101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDNNTF 158
V + HPT P +++ SDD +KLW KAW GHT+ V ++ +P N
Sbjct: 211 GVNWASFHPTLPLIVSGSDDRQVKLWRMSATKAWEVDTC-RGHTNNVDSVIFHPH-QNLI 268
Query: 159 ASASLDRTVKVWQLGSASP 177
S D+T++VW L +P
Sbjct: 269 ISVGEDKTLRVWDLDKRTP 287
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 35/199 (17%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN-------------------HETNQNVK 51
LT + V C HPT+ ++++ + + +W+ QN+
Sbjct: 133 LTGHNHFVMCAQFHPTDDLIVSASLDETIRIWDISGLRKRHSAPGTSSFEEQMSAQQNLL 192
Query: 52 SFEVCDLPVRA-----------AKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFEAH 98
+ D V+ A F P IV+GSDD QV ++ + + + H
Sbjct: 193 DGSLGDCVVKFILEGHTRGVNWASFHPTLPLIVSGSDDRQVKLWRMSATKAWEVDTCRGH 252
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
++ V V HP Q +++ +D +++W+ +K +Q F+ I +P N
Sbjct: 253 TNNVDSVIFHPHQNLIISVGEDKTLRVWDLDKRTPVKQ-FKRENDRFWLIAAHPHIN--L 309
Query: 159 ASASLDRTVKVWQLGSASP 177
A+ D + V++L P
Sbjct: 310 FGAAHDSGIMVFKLDRERP 328
>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina
GN=HET-E1 PE=4 SV=1
Length = 1356
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 4/189 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + ++ E V + F P + + +GSDD + +++ + + E H
Sbjct: 865 IKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGH 924
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
V+ VA P + + SDD IK+W+ + C Q EGH V+ + +P D
Sbjct: 925 GGRVQSVAFSPDGQRVASGSDDHTIKIWD-AASGTCTQTLEGHGSSVLSVAFSP-DGQRV 982
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
AS S D+T+K+W S + TLEGH V V + G + + SG+DD+ +KIWD +
Sbjct: 983 ASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQR--VASGSDDKTIKIWDTAS 1040
Query: 219 KTCVQTLES 227
TC QTLE
Sbjct: 1041 GTCTQTLEG 1049
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 4/189 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + ++ E V + F P + +GSDD + +++ + + E H
Sbjct: 991 IKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGH 1050
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+V+ V P + + SDD IK+W+ + C Q EGH V + +P D
Sbjct: 1051 GGWVQSVVFSPDGQRVASGSDDHTIKIWD-AVSGTCTQTLEGHGDSVWSVAFSP-DGQRV 1108
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
AS S+D T+K+W S + TLEGH V+ V + G + + SG+ D +KIWD +
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQR--VASGSIDGTIKIWDAAS 1166
Query: 219 KTCVQTLES 227
TC QTLE
Sbjct: 1167 GTCTQTLEG 1175
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 4/189 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ V E N ++ E V + F + +GSDD + +++ + + E H
Sbjct: 823 ISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGH 882
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
V VA P + + + SDD IK+W+ + C Q EGH V + +P D
Sbjct: 883 GGSVWSVAFSPDRERVASGSDDKTIKIWD-AASGTCTQTLEGHGGRVQSVAFSP-DGQRV 940
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
AS S D T+K+W S + TLEGH V V + G + + SG+ D+ +KIWD +
Sbjct: 941 ASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQR--VASGSGDKTIKIWDTAS 998
Query: 219 KTCVQTLES 227
TC QTLE
Sbjct: 999 GTCTQTLEG 1007
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + ++ E V + F P + +GS D + +++ + + E H
Sbjct: 1075 IKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGH 1134
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+V VA P + + S D IK+W+ + C Q EGH +V + +P D
Sbjct: 1135 GGWVHSVAFSPDGQRVASGSIDGTIKIWD-AASGTCTQTLEGHGGWVQSVAFSP-DGQRV 1192
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
AS S D+T+K+W S + TLEGH V V + G + + SG+ D +KIWD +
Sbjct: 1193 ASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQR--VASGSSDNTIKIWDTAS 1250
Query: 219 KTCVQTLESG 228
TC QTL G
Sbjct: 1251 GTCTQTLNVG 1260
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 2/173 (1%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ L D V P + + +G + +W+ + ++ E V + F P
Sbjct: 1087 QTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPD 1146
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
+ +GS D + +++ + + E H +V+ VA P + + S D IK+W+
Sbjct: 1147 GQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWD- 1205
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
+ C Q EGH +V + +P D AS S D T+K+W S + TL
Sbjct: 1206 TASGTCTQTLEGHGGWVQSVAFSP-DGQRVASGSSDNTIKIWDTASGTCTQTL 1257
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%)
Query: 36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
+G + +W+ + ++ E V++ F P + +GS D + +++ + +
Sbjct: 1156 DGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTL 1215
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
E H +V+ VA P + + S D IK+W+ Q + G T
Sbjct: 1216 EGHGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGST 1262
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 5/199 (2%)
Query: 30 MLASLYNGH-VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
MLAS + V +W+ + Q +K+F+ VR+ F P + +GS D V +++ ++
Sbjct: 920 MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISS 979
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
E + F+ H+ +V VA + L T S D ++LW+ + C +F+GHT V +
Sbjct: 980 GECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSS-QCFYIFQGHTSCVRSV 1038
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
V + D AS S D+TV++W + S + +TL+GH V V + D L SG DD
Sbjct: 1039 VFS-SDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVF--SPDGAMLASGGDD 1095
Query: 209 RLVKIWDYQNKTCVQTLES 227
++V++WD + C+ TL+
Sbjct: 1096 QIVRLWDISSGNCLYTLQG 1114
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 4/210 (1%)
Query: 18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD 77
V +P + + + V +W +++ + +F+ V + F P + +GSD
Sbjct: 1287 VNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSD 1346
Query: 78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV 137
D V +++ ++ E ++F H+++V V P L + S D ++LW+ C
Sbjct: 1347 DQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSG-KCLYT 1405
Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG 197
+GH ++V IV +P D AS S D+TV++W + S +TL GH V V +
Sbjct: 1406 LQGHNNWVGSIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAF--SS 1462
Query: 198 DKPYLISGADDRLVKIWDYQNKTCVQTLES 227
D L SG+DD +K+WD + C++TL+S
Sbjct: 1463 DGLILASGSDDETIKLWDVKTGECIKTLKS 1492
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 4/207 (1%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
+P + + + V +W+ +++ + +F+ V + F P + + +GS D V
Sbjct: 1250 FNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVR 1309
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++ ++ + H+F+ H+ +V V P L + SDD ++LW+ C F GHT
Sbjct: 1310 LWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG-ECLYTFLGHT 1368
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
++V ++ +P D AS S D+TV++W + S +TL+GH V + + D L
Sbjct: 1369 NWVGSVIFSP-DGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVF--SPDGTLL 1425
Query: 203 ISGADDRLVKIWDYQNKTCVQTLESGI 229
SG+DD+ V++W+ + C+ TL I
Sbjct: 1426 ASGSDDQTVRLWNISSGECLYTLHGHI 1452
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 5/199 (2%)
Query: 30 MLASLYNGH-VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
MLAS + V +W+ + + + + VR F P + GS D V +++ ++
Sbjct: 1088 MLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISS 1147
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
+ ++ + H+++V VA P L + S D ++LW+ + C + +GHT +V +
Sbjct: 1148 KKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSS-KCLYILQGHTSWVNSV 1206
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
V NP D +T AS S D+TV++W++ S+ T +GH VN V + D L SG+ D
Sbjct: 1207 VFNP-DGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVF--NPDGSMLASGSSD 1263
Query: 209 RLVKIWDYQNKTCVQTLES 227
+ V++WD + C+ T +
Sbjct: 1264 KTVRLWDISSSKCLHTFQG 1282
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 4/192 (2%)
Query: 36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
G V W T + + + + + V + F + +GSDD V +++ ++ + +F
Sbjct: 885 GGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTF 944
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
+ H+ VR V P L + S D ++LW+ C +F+GHT +V + N D
Sbjct: 945 KGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSG-ECLYIFQGHTGWVYSVAFNL-DG 1002
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+ A+ S D+TV++W + S+ + +GH V V + D L SG+DD+ V++WD
Sbjct: 1003 SMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVF--SSDGAMLASGSDDQTVRLWD 1060
Query: 216 YQNKTCVQTLES 227
+ C+ TL+
Sbjct: 1061 ISSGNCLYTLQG 1072
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V +W +++ + +F+ V + F P + + +GS D V +++ ++ + H+F+ H
Sbjct: 1224 VRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGH 1283
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+++V VA +P L + S D ++LW + C F+GHT +V + +P D
Sbjct: 1284 TNWVNSVAFNPDGSMLASGSGDQTVRLWEISSS-KCLHTFQGHTSWVSSVTFSP-DGTML 1341
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
AS S D+TV++W + S +T GH V V + D L SG+ D+ V++W +
Sbjct: 1342 ASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF--SPDGAILASGSGDQTVRLWSISS 1399
Query: 219 KTCVQTLES 227
C+ TL+
Sbjct: 1400 GKCLYTLQG 1408
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 100/199 (50%), Gaps = 5/199 (2%)
Query: 30 MLASLYNGH-VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
MLAS + V +W+ + + + + VR+ F P + +G DD V +++ ++
Sbjct: 1046 MLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISS 1105
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
++ + ++ +VR + P L S D +++LW+ C +GHT++V +
Sbjct: 1106 GNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSK-KCLYTLQGHTNWVNAV 1164
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
+P D T AS S D+TV++W + S+ + L+GH VN V + D L SG+ D
Sbjct: 1165 AFSP-DGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVF--NPDGSTLASGSSD 1221
Query: 209 RLVKIWDYQNKTCVQTLES 227
+ V++W+ + C+ T +
Sbjct: 1222 QTVRLWEINSSKCLCTFQG 1240
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
V F P TG V + T + + + H+ +V V L + SD
Sbjct: 867 VLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSD 926
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
D ++LW+ C + F+GHT V +V +P ++ AS S D+TV++W + S +
Sbjct: 927 DQTVRLWDISSG-QCLKTFKGHTSRVRSVVFSP-NSLMLASGSSDQTVRLWDISSGECLY 984
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221
+GH V V + D L +G+ D+ V++WD + C
Sbjct: 985 IFQGHTGWVYSVAFNL--DGSMLATGSGDQTVRLWDISSSQC 1024
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Query: 30 MLASLYNGH-VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
MLAS + V +W+ + + + +F V + F P + +GS D V +++ ++
Sbjct: 1340 MLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISS 1399
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
+ ++ + H+++V + P L + SDD ++LWN C GH + V +
Sbjct: 1400 GKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSG-ECLYTLHGHINSVRSV 1458
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE--KGVN 189
+ D AS S D T+K+W + + TL+ + +G+N
Sbjct: 1459 AFS-SDGLILASGSDDETIKLWDVKTGECIKTLKSEKIYEGMN 1500
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
N+ +A VF V+ + +P D FA+ V+ W+ + T +GH
Sbjct: 849 NFTEANLAYSVFTKILGSVLTVAFSP-DGKLFATGDSGGIVRFWEAATGKELLTCKGHNS 907
Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
VN V + D L SG+DD+ V++WD + C++T +
Sbjct: 908 WVNSVGFSQ--DGKMLASGSDDQTVRLWDISSGQCLKTFKG 946
>sp|B3S4I5|LIS1_TRIAD Lissencephaly-1 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_50647
PE=3 SV=1
Length = 409
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 20/236 (8%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
K L+ + C HP M++S + + +W++E+ ++ V+ F
Sbjct: 100 KHSLSGHRSPITCVVFHPVYNVMVSSSEDASMKIWDYESGDFERTLRGHTDSVQDLAFDS 159
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+ + S DM V ++++ T E + H V V P+ FLL+SS D IK+W
Sbjct: 160 SGKLLASSSADMTVKIWDFQTFECRMTLRGHDHNVSSVCFLPSGDFLLSSSRDKTIKMWE 219
Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
+ C FEGH +V ++ + D + AS S D+TV++W L S L GHE
Sbjct: 220 VATGY-CVYNFEGHREWVRRVAV-ASDGSLMASCSNDQTVRIWSLSSKECKEELRGHEHV 277
Query: 188 VNCVDY----------------YHGGDK--PYLISGADDRLVKIWDYQNKTCVQTL 225
V C+ + G K P+L SG+ DR++KIWD C+ +L
Sbjct: 278 VECIKWAPESCNRYINEASGTEVPKGQKSGPFLASGSRDRVIKIWDVTTAVCLFSL 333
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + +S + V +W+ +T + + D V + F
Sbjct: 140 DFERTLRGHTDSVQDLAFDSSGKLLASSSADMTVKIWDFQTFECRMTLRGHDHNVSSVCF 199
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P +++++ S D + ++ T ++FE H ++VR VAV + + S+D +++
Sbjct: 200 LPSGDFLLSSSRDKTIKMWEVATGYCVYNFEGHREWVRRVAVASDGSLMASCSNDQTVRI 259
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF-------------------ASASLDRT 166
W+ C++ GH H V I P+ N + AS S DR
Sbjct: 260 WSLSSK-ECKEELRGHEHVVECIKWAPESCNRYINEASGTEVPKGQKSGPFLASGSRDRV 318
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + +A F+L GH+ V + ++ GG YL S +DD+ +KIW+ ++K C ++LE
Sbjct: 319 IKIWDVTTAVCLFSLVGHDNWVRGLAFHAGG--KYLTSASDDKTIKIWELRHKRCSKSLE 376
Query: 227 S 227
+
Sbjct: 377 A 377
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
HS H + CV HP +++SS+D +K+W++E ++ GHT V + +
Sbjct: 101 HSLSGHRSPITCVVFHPVYNVMVSSSEDASMKIWDYESG-DFERTLRGHTDSVQDLAFD- 158
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS+S D TVK+W + TL GH+ V+ V + GD +L+S + D+ +K
Sbjct: 159 SSGKLLASSSADMTVKIWDFQTFECRMTLRGHDHNVSSVCFLPSGD--FLLSSSRDKTIK 216
Query: 213 IWDYQNKTCVQTLE 226
+W+ CV E
Sbjct: 217 MWEVATGYCVYNFE 230
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 24/211 (11%)
Query: 25 PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84
P+ ++L+S + + +W T V +FE VR + + + S+D V ++
Sbjct: 201 PSGDFLLSSSRDKTIKMWEVATGYCVYNFEGHREWVRRVAVASDGSLMASCSNDQTVRIW 260
Query: 85 NYNTLERFHSFEAHSDYVRCVAVHP--------------------TQPFLLTSSDDMLIK 124
+ ++ E H V C+ P + PFL + S D +IK
Sbjct: 261 SLSSKECKEELRGHEHVVECIKWAPESCNRYINEASGTEVPKGQKSGPFLASGSRDRVIK 320
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
+W+ A C GH ++V + + SAS D+T+K+W+L + +LE H
Sbjct: 321 IWDVTTA-VCLFSLVGHDNWVRGLAFHA-GGKYLTSASDDKTIKIWELRHKRCSKSLEAH 378
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
V +D++ P++I+G+ D +K+W+
Sbjct: 379 NHFVTTIDFHRSS--PFVITGSVDLTIKVWE 407
>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_59218 PE=3 SV=1
Length = 406
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 20/239 (8%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + +W+ +T +N+K+ D V + F
Sbjct: 139 DFERTLKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHF 198
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P +++++ S D + ++ T +F H ++VR V V+ L + S+D +++
Sbjct: 199 MPNGDFLISASRDKTIKMWELATGYCVKTFTGHREWVRTVRVNQDGSLLASCSNDQTVRV 258
Query: 126 W---NWE--------------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
W N E AWA + GH VM + S S D+T+K
Sbjct: 259 WVVANKECKAELREHEHVVECIAWAPESC-NGHVSEVMGAEKKGRSGPFLLSGSRDKTIK 317
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
+W + + TL GH+ V V ++ GG Y+IS +DD+ +++WDY+NK C +TLE+
Sbjct: 318 MWDISTGVCIMTLVGHDNWVRGVVWHPGG--KYIISASDDKTIRVWDYKNKRCQKTLEA 374
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 18/219 (8%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + +W++ET ++ + V+ F + + + S DM +
Sbjct: 114 FHPVYSVMVSASEDATIKIWDYETGDFERTLKGHTDAVQDVSFDQQGKLLASCSADMTIK 173
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ T E + H V V P FL+++S D IK+W + C + F GH
Sbjct: 174 LWDFQTFENIKTMHGHDHNVSSVHFMPNGDFLISASRDKTIKMWELATGY-CVKTFTGHR 232
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + +N +D + AS S D+TV+VW + + L HE V C+ +
Sbjct: 233 EWVRTVRVN-QDGSLLASCSNDQTVRVWVVANKECKAELREHEHVVECIAWAPESCNGHV 291
Query: 195 --------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 292 SEVMGAEKKGRSGPFLLSGSRDKTIKMWDISTGVCIMTL 330
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
+S H + V HP ++++S+D IK+W++E ++ +GHT V + +
Sbjct: 100 YSLSGHRSPITRVLFHPVYSVMVSASEDATIKIWDYETG-DFERTLKGHTDAVQDVSFD- 157
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
+ AS S D T+K+W + T+ GH+ V+ V + GD +LIS + D+ +K
Sbjct: 158 QQGKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGD--FLISASRDKTIK 215
Query: 213 IWDYQNKTCVQTL 225
+W+ CV+T
Sbjct: 216 MWELATGYCVKTF 228
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%)
Query: 28 PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87
P++L+ + + +W+ T + + D VR + P +I++ SDD + V++Y
Sbjct: 305 PFLLSGSRDKTIKMWDISTGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYK 364
Query: 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+ EAH + + H + P+++T S D +K+W
Sbjct: 365 NKRCQKTLEAHQHFCTSIDFHRSAPYVITGSVDQTVKVWE 404
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 4/188 (2%)
Query: 38 HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA 97
+V +W+ +K+ + V + F P + + S D + +++ +
Sbjct: 707 NVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTG 766
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
H+D+VRCVA P L +S+ D IKLW+ + C + + HT +V + + D T
Sbjct: 767 HTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQG-KCLRTLKSHTGWVRSVAFSA-DGQT 824
Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
AS S DRT+K+W + T GH V + Y D L+SG+ DR +K+WD Q
Sbjct: 825 LASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSP--DSKILVSGSGDRTIKLWDCQ 882
Query: 218 NKTCVQTL 225
C++TL
Sbjct: 883 THICIKTL 890
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 26/230 (11%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ LT +D V+C P + +S + + +W+ + +++ + VR+ F
Sbjct: 762 QTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSAD 821
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
+ +GS D + ++NY+T E ++ H++ V +A P L++ S D IKLW+
Sbjct: 822 GQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDC 881
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+ C + GHT+ V + +P D T A SLD++V++W +
Sbjct: 882 QTH-ICIKTLHGHTNEVCSVAFSP-DGQTLACVSLDQSVRLWNCRTG------------- 926
Query: 189 NCVDYYHGG-----------DKPYLISGADDRLVKIWDYQNKTCVQTLES 227
C+ ++G D+ L SG++D+ VK+WD+Q + +LE
Sbjct: 927 QCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEG 976
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 4/217 (1%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L +D V HP + + V +WN T Q +K+ + + P
Sbjct: 1016 LLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQ 1075
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+ + S D V +++ T HS+ V P + T S D +K+W+W++
Sbjct: 1076 LLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQ 1135
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
C + GHT++V I +P D ASAS D+TV++W + + + GH V+
Sbjct: 1136 G-KCLKTLTGHTNWVFDIAFSP-DGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSS 1193
Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
V + G+ + SG+ D+ V+IW+ + C+Q L +
Sbjct: 1194 VAFSPDGE--VVASGSQDQTVRIWNVKTGECLQILRA 1228
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 4/168 (2%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
+ +A F P + T D V V+ + + HS++VR V P L +
Sbjct: 645 ILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGA 704
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
D +KLW+ C + GH H V + +P D T ASAS D+T+K+W + +
Sbjct: 705 DENVKLWSVRDG-VCIKTLTGHEHEVFSVAFHP-DGETLASASGDKTIKLWDIQDGTCLQ 762
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
TL GH V CV + G+ L S A D +K+WD C++TL+S
Sbjct: 763 TLTGHTDWVRCVAFSPDGNT--LASSAADHTIKLWDVSQGKCLRTLKS 808
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 10/192 (5%)
Query: 39 VHVWNHETNQNVKS-FEVCD--LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
V +WN T Q +K+ + D LPV F P + + +GS+D V ++++ T + S
Sbjct: 918 VRLWNCRTGQCLKAWYGNTDWALPV---AFSPDRQILASGSNDKTVKLWDWQTGKYISSL 974
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
E H+D++ +A P L ++S D ++LWN C Q+ HT +V +V +P+
Sbjct: 975 EGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTG-QCFQILLEHTDWVYAVVFHPQ-G 1032
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
A+ S D TVK+W + + TL H + + + D L S + D+ V++WD
Sbjct: 1033 KIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP--DGQLLASASADQSVRLWD 1090
Query: 216 YQNKTCVQTLES 227
CV L
Sbjct: 1091 CCTGRCVGILRG 1102
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Query: 78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV 137
D+ CVF TL S A P L T D +++W K+ +
Sbjct: 632 DLSCCVFT-ETLGNILS----------AAFSPEGQLLATCDTDCHVRVWE-VKSGKLLLI 679
Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG 197
GH+++V +V +P D AS D VK+W + TL GHE V V ++ G
Sbjct: 680 CRGHSNWVRFVVFSP-DGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDG 738
Query: 198 DKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ L S + D+ +K+WD Q+ TC+QTL
Sbjct: 739 ET--LASASGDKTIKLWDIQDGTCLQTL 764
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ L+ SD++ P + ++ + V +W+ T + V V +A F P
Sbjct: 1056 KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPN 1115
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
I T S D V ++++ + + H+++V +A P L ++S D +++W+
Sbjct: 1116 GEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDV 1175
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
C + GHTH V + +P D AS S D+TV++W +
Sbjct: 1176 NTG-KCHHICIGHTHLVSSVAFSP-DGEVVASGSQDQTVRIWNV 1217
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora
curvata GN=pkwA PE=3 SV=1
Length = 742
Score = 92.0 bits (227), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 44 HETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVR 103
HE N+ D A F P + + GS D + V++ + + H+ E H+D+VR
Sbjct: 448 HELNE--PRILTTDREAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVR 505
Query: 104 CVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163
VA P L + SDD ++LW+ A + VFEGHTHYV+ I +P D + AS S
Sbjct: 506 AVAFSPDGALLASGSDDATVRLWDVAAAEE-RAVFEGHTHYVLDIAFSP-DGSMVASGSR 563
Query: 164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
D T ++W + + + + L+GH V V + D + SG+ D +++WD
Sbjct: 564 DGTARLWNVATGTEHAVLKGHTDYVYAVAF--SPDGSMVASGSRDGTIRLWD 613
Score = 80.9 bits (198), Expect = 7e-15, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 5/188 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+HVW+ + + + E VRA F P + +GSDD V +++ E FE H
Sbjct: 483 IHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGH 542
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+ YV +A P + + S D +LWN V +GHT YV + +P D +
Sbjct: 543 THYVLDIAFSPDGSMVASGSRDGTARLWNVATGTE-HAVLKGHTDYVYAVAFSP-DGSMV 600
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
AS S D T+++W + + L+ + N V D L+ G+D V +WD +
Sbjct: 601 ASGSRDGTIRLWDVATGKERDVLQAPAE--NVVSLAFSPDGSMLVHGSDST-VHLWDVAS 657
Query: 219 KTCVQTLE 226
+ T E
Sbjct: 658 GEALHTFE 665
Score = 77.4 bits (189), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L +D V P + + +G + +W+ T + + V + F P +
Sbjct: 581 LKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGS 640
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+V GSD V +++ + E H+FE H+D+VR VA P L + SDD I+LW+
Sbjct: 641 MLVHGSDST-VHLWDVASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWD-VA 698
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
A EGHT V + +P + T ASAS D T+++W + +
Sbjct: 699 AQEEHTTLEGHTEPVHSVAFHP-EGTTLASASEDGTIRIWPIAT 741
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 43/244 (17%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L +D V+ P + + + V +W+ + FE V F P +
Sbjct: 497 LEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGS 556
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN--- 127
+ +GS D ++N T + H+DYV VA P + + S D I+LW+
Sbjct: 557 MVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVAT 616
Query: 128 ------------------------------------WEKAWA-CQQVFEGHTHYVMQIVI 150
W+ A FEGHT +V +
Sbjct: 617 GKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEALHTFEGHTDWVRAVAF 676
Query: 151 NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
+P D AS S DRT+++W + + + TLEGH + V+ V ++ G L S ++D
Sbjct: 677 SP-DGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTT--LASASEDGT 733
Query: 211 VKIW 214
++IW
Sbjct: 734 IRIW 737
>sp|Q9NDC9|LIS1_CAEEL Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2
SV=1
Length = 404
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 26/236 (11%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-----VCDLPVRAA 63
+KLT + HP M + + + VW++ET Q ++ + V D+ + AA
Sbjct: 100 QKLTGHRLPITRVIFHPLWTIMASCSEDATIKVWDYETGQLERTLKGHTDAVNDIAIDAA 159
Query: 64 KFVPRKNWIVTGSDDMQVCVFNYN-TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
+V+ S D+ + ++++ T + S + H V V PT F+L++S D
Sbjct: 160 G-----KQLVSCSSDLSIKLWDFGQTYDCLKSLKGHEHTVSSVTFLPTGDFVLSASRDHT 214
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
IK W+ + C F GH +V I I+ D FASASLD+TV VW + S L
Sbjct: 215 IKQWDISTGY-CVYTFRGHNDWVRMIRIS-NDGTLFASASLDQTVTVWSFATKSAKLVLR 272
Query: 183 GHEKGVNCVDYY-------------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
HE V CV++ G L SG+ DR +K W+ + TL
Sbjct: 273 DHEHAVECVEWAPDTAYTNVTGQQPEGNSTHILFSGSRDRSIKAWNINTGDVLFTL 328
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 111/236 (47%), Gaps = 18/236 (7%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNH-ETNQNVKSFEVCDLPVRAAKF 65
++R L +D V + +++ + + +W+ +T +KS + + V + F
Sbjct: 140 LERTLKGHTDAVNDIAIDAAGKQLVSCSSDLSIKLWDFGQTYDCLKSLKGHEHTVSSVTF 199
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P +++++ S D + ++ +T ++F H+D+VR + + ++S D + +
Sbjct: 200 LPTGDFVLSASRDHTIKQWDISTGYCVYTFRGHNDWVRMIRISNDGTLFASASLDQTVTV 259
Query: 126 WNWEKAWACQQVFEGHTH------------YVMQIVINPKDNNT--FASASLDRTVKVWQ 171
W++ + + V H H Y P+ N+T S S DR++K W
Sbjct: 260 WSFATK-SAKLVLRDHEHAVECVEWAPDTAYTNVTGQQPEGNSTHILFSGSRDRSIKAWN 318
Query: 172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
+ + FTL HE V + ++ G YLIS ADD+ +++W+ + C++ +E+
Sbjct: 319 INTGDVLFTLLAHENWVRGLAFHPKG--KYLISVADDKTLRVWELSAQRCMKAIEA 372
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
+ +GS D + +N NT + + AH ++VR +A HP +L++ +DD +++W A
Sbjct: 305 LFSGSRDRSIKAWNINTGDVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLRVWEL-SA 363
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171
C + E H H+V + + + + + S+D + KVW+
Sbjct: 364 QRCMKAIEAHEHFVSTVAFH-QTSPFVITGSVDMSCKVWE 402
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 19/225 (8%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D + L V PT ++L++ + + W+ T V +F + VR +
Sbjct: 182 DCLKSLKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDISTGYCVYTFRGHNDWVRMIRI 241
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP---------TQP---- 112
+ S D V V+++ T H V CV P QP
Sbjct: 242 SNDGTLFASASLDQTVTVWSFATKSAKLVLRDHEHAVECVEWAPDTAYTNVTGQQPEGNS 301
Query: 113 --FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
L + S D IK WN + H ++V + +PK S + D+T++VW
Sbjct: 302 THILFSGSRDRSIKAWNINTGDVLFTLL-AHENWVRGLAFHPK-GKYLISVADDKTLRVW 359
Query: 171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+L + +E HE V+ V ++ P++I+G+ D K+W+
Sbjct: 360 ELSAQRCMKAIEAHEHFVSTVAFHQTS--PFVITGSVDMSCKVWE 402
>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3
SV=1
Length = 417
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 15/234 (6%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
+ + L +D V+ P+ ++ + + V +W+ Q +K+ D V + F
Sbjct: 155 EFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVKLWDFTIYQCIKTLTGHDHNVSSVAF 214
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P +++V+ S D + ++ +T +F H++++R V P L + S+D I++
Sbjct: 215 LPSGDFLVSASRDKTIKMWEVSTGYCTKTFIGHTEWIRSVRPSPEGNLLASCSNDHTIRI 274
Query: 126 WNWEKAWACQQVFEGHTHYVMQI--VINPKDNNT----------FASASLDRTVKVWQLG 173
W+ E CQ V GH H V I +P++ N+ S S DRT++ W +
Sbjct: 275 WSVESR-ECQVVLRGHEHVVECIAWASHPQNLNSLPSSMNSSLLLVSGSRDRTIRFWDVN 333
Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
F L GH+ V + ++ G L+S +DD+ +++WD +N+ C +TL +
Sbjct: 334 IGICLFVLIGHDNWVRQLVFHPHGR--LLLSASDDKTIRVWDLKNRRCHKTLNA 385
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
P+ F P N V+ S+D + V++Y T E H+ + H+D V+ VA P+ FL + S
Sbjct: 124 PITRVLFHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCS 183
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM +KLW++ + C + GH H V + P + SAS D+T+K+W++ +
Sbjct: 184 ADMQVKLWDF-TIYQCIKTLTGHDHNVSSVAFLPS-GDFLVSASRDKTIKMWEVSTGYCT 241
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221
T GH + + V G+ L S ++D ++IW +++ C
Sbjct: 242 KTFIGHTEWIRSVRPSPEGN--LLASCSNDHTIRIWSVESREC 282
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
+ H + V HP +++S+D IK+W++E + +GHT V + +P
Sbjct: 117 TLTGHRSPITRVLFHPHYNVFVSASEDASIKVWDYETG-EFEHTLKGHTDSVQDVAFDPS 175
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
AS S D VK+W TL GH+ V+ V + GD +L+S + D+ +K+
Sbjct: 176 -GKFLASCSADMQVKLWDFTIYQCIKTLTGHDHNVSSVAFLPSGD--FLVSASRDKTIKM 232
Query: 214 WDYQNKTCVQTL 225
W+ C +T
Sbjct: 233 WEVSTGYCTKTF 244
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
VR F P +++ SDD + V++ + AHS +V + V+ P+ +T S
Sbjct: 348 VRQLVFHPHGRLLLSASDDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGSV 407
Query: 120 DMLIKLWN 127
D I +W+
Sbjct: 408 DQTIHIWD 415
>sp|Q8HXX0|LIS1_MACFA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P L+++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + +V+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHLVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
S S D T+K+W T+ GH+ V+ V GD +L+S + D+ +K
Sbjct: 160 HSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HLVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|Q4RJN5|LIS1_TETNG Lissencephaly-1 homolog OS=Tetraodon nigroviridis GN=pafah1b1 PE=3
SV=1
Length = 410
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDLTGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ + E + H V VA+ P ++++S D +K+W + C + F GH
Sbjct: 176 LWDFQSFECIRTMHGHDHNVSSVAIMPNGDHIISASRDKTMKMWEVATGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + S L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 LDATSSESKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 22/239 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ T + + + + +W+ ++ + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDLTGKLLASCSADMTIKLWDFQSFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + I++ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIISASRDKTMKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINP-------------------KDNNTFASASLDRT 166
W C+ H H V I P K S S D+T
Sbjct: 261 WVVASK-ECKAELREHEHVVECISWAPESAHPTILDATSSESKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+K+W + + TL GH+ V V ++ GG ++++ ADD+ ++IWDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHPGG--KFIVTCADDKTLRIWDYKNKRCMKTL 376
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ T L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDLTGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ ++ C + GH H V + I P ++ SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-SFECIRTMHGHDHNVSSVAIMPNGDHII-SASRDKTMKMWEVATGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W +K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVASKECKAEL 272
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV 149
ER+ + H V V HP ++++S+D IK+W++E ++ +GHT V I
Sbjct: 100 ERY-ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDIS 157
Query: 150 INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
+ AS S D T+K+W S T+ GH+ V+ V GD ++IS + D+
Sbjct: 158 FDLT-GKLLASCSADMTIKLWDFQSFECIRTMHGHDHNVSSVAIMPNGD--HIISASRDK 214
Query: 210 LVKIWDYQNKTCVQTL 225
+K+W+ CV+T
Sbjct: 215 TMKMWEVATGYCVKTF 230
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIISASRDKTMKMWEVATGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA-----VHPT------------- 110
I + S+D V V+ + E H V C++ HPT
Sbjct: 246 GTLIASCSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTILDATSSESKKSG 305
Query: 111 --QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ +P A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHPGGKFIVTCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+W + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 IWDYKNKRCMKTLCAHEHFVTSLDFHKAA--PYVVTGSVDQTVKVWE 408
>sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo
sapiens GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus
musculus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|B0LSW3|LIS1_FELCA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Felis catus GN=PAFAH1B1 PE=2 SV=1
Length = 410
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|Q9PTR5|LIS1_CHICK Lissencephaly-1 homolog OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTL 334
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ T + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WD++NK C++TL
Sbjct: 320 IKMWDISTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDFKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ T L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDISTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDFKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|Q5IS43|LIS1_PANTR Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan
troglodytes GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGFVDQTVKVWE 408
>sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos
taurus GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVEDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|Q5REG7|LIS1_PONAB Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + ++ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D ++ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D ++ + + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSIQDIPFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT + I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSIQDIPFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|Q7T394|LIS1A_DANRE Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3
Length = 410
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP ++++ + + VW+HET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVIVSASEDATIKVWDHETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS+S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 LEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTL 334
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ T + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + +SS+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASSSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINP-------------------KDNNTFASASLDRT 166
W C+ H H V I P K S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + TL GH+ V V + GG Y++S ADD+ ++IWDY+NK C +TL
Sbjct: 320 IKMWDVSIGMCLMTLVGHDNWVRGVLVHPGGK--YIVSCADDKTLRIWDYKNKRCTKTLS 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + IV+ S+D + V+++ T + + + H+D V+ ++ T L + S
Sbjct: 110 PVTRVIFHPVFSVIVSASEDATIKVWDHETGDFERTLKGHTDSVQDISFDHTGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVATGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASSSNDQTVRVWVVATKECKAEL 272
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA-----VHPT------------- 110
I + S+D V V+ T E H V C++ HPT
Sbjct: 246 GTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILEATGSETKKSG 305
Query: 111 --QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++++P S + D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSIG-MCLMTLVGHDNWVRGVLVHP-GGKYIVSCADDKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+W + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 IWDYKNKRCTKTLSAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W+ E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVIVSASEDATIKVWDHETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ CV+T
Sbjct: 218 MWEVATGYCVKTF 230
>sp|Q9GL51|LIS1_PIG Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus
scrofa GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P +++++ D IK+W + + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + + L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ + + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ + D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
W C+ H H V I P+ + + S S D+T
Sbjct: 261 WVVATK-ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+K+W + + TL GH+ V V ++ GG +++S ADD+ +++WDY+NK C++TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
+
Sbjct: 378 A 378
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SA+ D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSAARDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAEL 272
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S A D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSAARDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ Q CV+T
Sbjct: 218 MWEVQTGYCVKTF 230
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W +T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----------------- 111
I + S+D V V+ T E H V C++ P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 112 ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++ + + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
VW + TL HE V +D++ PY+++G+ D+ VK+W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>sp|B5X3C4|LIS1B_SALSA Lissencephaly-1 homolog B OS=Salmo salar GN=pafah1b1-2 PE=2 SV=1
Length = 410
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+ S + + VW++E ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVTSSEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV----DYYH--- 195
+V + N +D + AS S D+TV+VW S L HE V C+ D H
Sbjct: 235 EWVRMVRPN-QDGSLIASCSNDQTVRVWVATSKECKAELREHEHVVECIAWAPDTAHPTI 293
Query: 196 -----------GGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 LEATSSESKKNGKSGPFLLSGSRDKTIKMWDISTGMCLMTL 334
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 22/239 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ T + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGSLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINP-------------------KDNNTFASASLDRT 166
W + C+ H H V I P K S S D+T
Sbjct: 261 WV-ATSKECKAELREHEHVVECIAWAPDTAHPTILEATSSESKKNGKSGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+K+W + + TL GH+ V V + GG +++S ADD+ ++IWDY+NK C++TL
Sbjct: 320 IKMWDISTGMCLMTLVGHDNWVRGVLVHPGGR--FIVSCADDKTLRIWDYKNKRCMKTL 376
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +VT S+D + V++Y + + + H+D V+ ++ T L + S
Sbjct: 110 PVTRVIFHPVFSVMVTSSEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVATGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W +K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDGS--LIASCSNDQTVRVWVATSKECKAEL 272
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV 149
ER+ + H V V HP ++TSS+D IK+W++E A ++ +GHT V I
Sbjct: 100 ERY-ALSGHRSPVTRVIFHPVFSVMVTSSEDATIKVWDYE-AGDFERTLKGHTDSVQDIS 157
Query: 150 INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
+ + AS S D T+K+W T+ GH+ V+ V GD +++S + D+
Sbjct: 158 FD-QTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDK 214
Query: 210 LVKIWDYQNKTCVQTL 225
+K+W+ CV+T
Sbjct: 215 TIKMWEVATGYCVKTF 230
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA-----VHPT------------- 110
+ I + S+D V V+ + E H V C+A HPT
Sbjct: 246 GSLIASCSNDQTVRVWVATSKECKAELREHEHVVECIAWAPDTAHPTILEATSSESKKNG 305
Query: 111 --QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++++P S + D+T++
Sbjct: 306 KSGPFLLSGSRDKTIKMWDISTG-MCLMTLVGHDNWVRGVLVHP-GGRFIVSCADDKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+W + TL HE V +D + PY+++G+ D+ VK+W+
Sbjct: 364 IWDYKNKRCMKTLCAHEHFVTSLDMHQTA--PYVVTGSVDQTVKVWE 408
>sp|B5X3Z6|LIS1A_SALSA Lissencephaly-1 homolog A OS=Salmo salar GN=pafah1b1-1 PE=2 SV=1
Length = 410
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 20/221 (9%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
HP M+++ + + VW++ET ++ + V+ F + + S DM +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIK 175
Query: 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142
++++ E + H V VA+ P ++++S D IK+W + C + F GH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGY-CVKTFTGHR 234
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY-------- 194
+V + N +D AS S D+TV+VW + S L HE V C+ +
Sbjct: 235 EWVRMVRPN-QDGTLIASCSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTI 293
Query: 195 ----------HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G P+L+SG+ D+ +K+WD C+ TL
Sbjct: 294 LEATGSESKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTL 334
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 4/167 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ T L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVATGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
T GH + V V G + S ++D+ V++W +K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVWVVASKECKAEL 272
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 22/239 (9%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
D +R L +D V+ T + + + + +W+ + + +++ D V +
Sbjct: 141 DFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+P + IV+ S D + ++ T +F H ++VR V + + + S+D +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINP-------------------KDNNTFASASLDRT 166
W C+ H H V I P K S S D+T
Sbjct: 261 WVVASK-ECKAELREHEHVVECISWAPESAHPTILEATGSESKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+K+W + TL GH+ V + + GG +++S ADD+ ++IWDY+NK C++TL
Sbjct: 320 IKMWDVSIGMCLMTLVGHDNWVRGMLVHPGGK--FILSCADDKTLRIWDYKNKRCMKTL 376
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
++ H V V HP ++++S+D IK+W++E ++ +GHT V I +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
AS S D T+K+W T+ GH+ V+ V GD +++S + D+ +K
Sbjct: 160 HTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
+W+ CV+T
Sbjct: 218 MWEVATGYCVKTF 230
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 24/227 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V + P ++++ + + +W T VK+F VR +
Sbjct: 186 RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQD 245
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA-----VHPT------------- 110
I + S+D V V+ + E H V C++ HPT
Sbjct: 246 GTLIASCSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTILEATGSESKKSG 305
Query: 111 --QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
PFLL+ S D IK+W+ C GH ++V ++++P + A D+T++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSIG-MCLMTLVGHDNWVRGMLVHPGGKFILSCAD-DKTLR 363
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+W + TL HE V +D++ + PY+++G+ D+ VK+W+
Sbjct: 364 IWDYKNKRCMKTLGAHEHFVTSLDFHK--NAPYVVTGSVDQTVKVWE 408
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,364,817
Number of Sequences: 539616
Number of extensions: 3749110
Number of successful extensions: 19588
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 707
Number of HSP's that attempted gapping in prelim test: 7988
Number of HSP's gapped (non-prelim): 6726
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)