Query psy4653
Match_columns 229
No_of_seqs 141 out of 1916
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 22:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 3.1E-46 1E-50 296.1 31.6 225 4-228 2-227 (304)
2 1vyh_C Platelet-activating fac 100.0 5E-42 1.7E-46 282.6 30.5 219 8-228 101-337 (410)
3 2ynn_A Coatomer subunit beta'; 100.0 1.7E-41 5.8E-46 268.8 31.1 219 8-228 48-269 (304)
4 3ow8_A WD repeat-containing pr 100.0 4.5E-41 1.5E-45 268.5 30.9 218 7-228 72-289 (321)
5 3frx_A Guanine nucleotide-bind 100.0 1.3E-40 4.3E-45 265.5 31.4 222 3-228 5-237 (319)
6 1vyh_C Platelet-activating fac 100.0 5.1E-41 1.7E-45 276.6 29.0 220 6-228 141-379 (410)
7 4ery_A WD repeat-containing pr 100.0 8.2E-40 2.8E-44 259.4 33.7 222 3-228 11-233 (312)
8 1got_B GT-beta; complex (GTP-b 100.0 1.1E-39 3.8E-44 262.1 32.8 217 5-226 45-265 (340)
9 4gqb_B Methylosome protein 50; 100.0 5.2E-40 1.8E-44 264.8 30.7 213 13-228 80-298 (344)
10 2pbi_B Guanine nucleotide-bind 100.0 2.9E-39 9.9E-44 261.3 32.5 219 5-226 54-279 (354)
11 3ow8_A WD repeat-containing pr 100.0 2.1E-39 7.1E-44 258.9 29.0 205 8-216 115-319 (321)
12 3iz6_a 40S ribosomal protein R 100.0 3.4E-40 1.1E-44 269.0 24.6 221 4-227 55-289 (380)
13 4gqb_B Methylosome protein 50; 100.0 1.9E-39 6.7E-44 261.5 28.7 208 10-220 122-333 (344)
14 2hes_X YDR267CP; beta-propelle 100.0 2.8E-39 9.5E-44 258.9 28.1 212 5-219 4-231 (330)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-39 7.4E-44 261.1 27.3 214 1-217 1-224 (345)
16 2pm7_B Protein transport prote 100.0 6.8E-39 2.3E-43 253.1 28.6 210 10-219 4-239 (297)
17 4ery_A WD repeat-containing pr 100.0 2.7E-38 9.4E-43 250.6 30.3 220 7-228 57-278 (312)
18 2xzm_R RACK1; ribosome, transl 100.0 2.3E-38 7.9E-43 254.7 29.1 214 2-218 8-244 (343)
19 4aow_A Guanine nucleotide-bind 100.0 1.1E-37 3.6E-42 248.9 32.1 226 1-228 24-256 (340)
20 1got_B GT-beta; complex (GTP-b 100.0 4.2E-38 1.4E-42 253.0 29.0 205 7-215 135-340 (340)
21 3f3f_A Nucleoporin SEH1; struc 100.0 7.7E-38 2.6E-42 249.2 29.2 219 8-228 4-350 (351)
22 2pbi_B Guanine nucleotide-bind 100.0 2.1E-37 7.3E-42 250.3 31.6 205 7-215 146-354 (354)
23 4g56_B MGC81050 protein; prote 100.0 4.4E-38 1.5E-42 254.7 26.7 216 9-226 88-309 (357)
24 1nr0_A Actin interacting prote 100.0 2.6E-37 8.8E-42 266.3 30.5 216 6-227 50-279 (611)
25 3bg1_A Protein SEC13 homolog; 100.0 1.4E-38 4.8E-43 253.4 20.9 212 7-218 5-247 (316)
26 4g56_B MGC81050 protein; prote 100.0 1.6E-37 5.5E-42 251.4 26.7 206 11-219 135-344 (357)
27 1erj_A Transcriptional repress 100.0 4.7E-37 1.6E-41 251.5 29.2 211 7-219 157-390 (393)
28 3dm0_A Maltose-binding peripla 100.0 7.3E-37 2.5E-41 266.9 31.4 221 6-228 373-602 (694)
29 1erj_A Transcriptional repress 100.0 2E-36 6.7E-41 247.8 31.9 209 16-228 124-351 (393)
30 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-37 1.1E-41 272.5 29.2 225 4-228 2-227 (814)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.3E-37 1.8E-41 247.1 27.9 213 11-225 57-342 (345)
32 2hes_X YDR267CP; beta-propelle 100.0 9E-37 3.1E-41 244.3 28.4 205 13-220 56-282 (330)
33 3frx_A Guanine nucleotide-bind 100.0 3.4E-36 1.2E-40 239.9 31.5 212 8-226 58-275 (319)
34 2pm7_B Protein transport prote 100.0 2.2E-36 7.7E-41 238.6 26.9 210 6-217 44-284 (297)
35 4e54_B DNA damage-binding prot 100.0 7.3E-37 2.5E-41 253.4 23.7 218 6-227 110-336 (435)
36 3iz6_a 40S ribosomal protein R 100.0 1.5E-36 5.2E-41 247.4 23.8 211 6-220 148-377 (380)
37 3dwl_C Actin-related protein 2 100.0 6.6E-38 2.3E-42 254.1 14.8 214 11-228 7-250 (377)
38 3jrp_A Fusion protein of prote 100.0 8.1E-36 2.8E-40 241.0 26.8 213 7-219 3-241 (379)
39 2xzm_R RACK1; ribosome, transl 100.0 2.8E-35 9.7E-40 236.7 29.5 207 8-222 69-289 (343)
40 3zwl_B Eukaryotic translation 100.0 6.3E-35 2.2E-39 234.7 30.5 215 8-226 25-257 (369)
41 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-35 1.2E-39 237.0 29.1 215 11-228 4-243 (372)
42 3bg1_A Protein SEC13 homolog; 100.0 5.5E-36 1.9E-40 238.4 23.2 217 8-226 50-304 (316)
43 3ei3_B DNA damage-binding prot 100.0 3.1E-35 1.1E-39 239.1 27.4 217 5-226 63-290 (383)
44 1nr0_A Actin interacting prote 100.0 5.2E-35 1.8E-39 252.0 29.4 211 9-225 141-362 (611)
45 2ymu_A WD-40 repeat protein; u 100.0 8.4E-35 2.9E-39 248.0 28.8 201 7-215 377-577 (577)
46 4h5i_A Guanine nucleotide-exch 100.0 1.2E-34 4.2E-39 235.1 28.0 201 13-218 131-343 (365)
47 2ymu_A WD-40 repeat protein; u 100.0 3.1E-34 1.1E-38 244.5 31.8 211 9-228 338-548 (577)
48 3gre_A Serine/threonine-protei 100.0 7.6E-35 2.6E-39 240.7 26.3 219 7-228 54-302 (437)
49 3vl1_A 26S proteasome regulato 100.0 1.1E-34 3.8E-39 238.2 26.2 209 7-218 131-365 (420)
50 3dm0_A Maltose-binding peripla 100.0 4.4E-34 1.5E-38 249.3 30.3 213 8-226 423-640 (694)
51 3dw8_B Serine/threonine-protei 100.0 2.1E-34 7.1E-39 238.2 26.9 211 14-228 27-326 (447)
52 3mmy_A MRNA export factor; mRN 100.0 8.3E-34 2.8E-38 228.1 29.0 220 5-228 29-314 (368)
53 3v7d_B Cell division control p 100.0 1.1E-33 3.7E-38 235.5 29.3 213 8-228 114-351 (464)
54 1sq9_A Antiviral protein SKI8; 100.0 3.7E-34 1.3E-38 233.3 25.7 216 6-226 53-330 (397)
55 3k26_A Polycomb protein EED; W 100.0 1.2E-34 4E-39 233.1 22.4 204 14-220 68-320 (366)
56 2aq5_A Coronin-1A; WD40 repeat 100.0 6.4E-34 2.2E-38 233.1 27.1 210 8-220 74-301 (402)
57 3k26_A Polycomb protein EED; W 100.0 3E-34 1E-38 230.7 24.3 205 11-221 14-263 (366)
58 1gxr_A ESG1, transducin-like e 100.0 1.5E-32 5.2E-37 218.4 33.6 207 13-225 95-303 (337)
59 1sq9_A Antiviral protein SKI8; 100.0 2.8E-34 9.4E-39 234.0 23.9 217 5-227 6-276 (397)
60 3dwl_C Actin-related protein 2 100.0 1.2E-34 4.1E-39 235.0 20.9 207 6-217 46-280 (377)
61 3odt_A Protein DOA1; ubiquitin 100.0 4.6E-33 1.6E-37 219.5 29.5 214 4-228 7-224 (313)
62 2pm9_A Protein WEB1, protein t 100.0 2.3E-34 7.9E-39 235.7 22.7 213 7-221 105-340 (416)
63 2oaj_A Protein SNI1; WD40 repe 100.0 8.6E-34 3E-38 253.6 28.2 207 12-224 14-248 (902)
64 2pm9_A Protein WEB1, protein t 100.0 6.6E-34 2.2E-38 233.0 25.1 214 13-228 65-304 (416)
65 2j04_B YDR362CP, TAU91; beta p 100.0 2E-34 6.7E-39 243.7 22.4 204 10-218 202-428 (524)
66 3vl1_A 26S proteasome regulato 100.0 3.1E-33 1.1E-37 229.5 28.6 215 8-227 91-332 (420)
67 1r5m_A SIR4-interacting protei 100.0 1.1E-32 3.7E-37 225.6 31.2 212 12-228 42-329 (425)
68 3jro_A Fusion protein of prote 100.0 6.6E-34 2.2E-38 250.4 25.1 213 8-220 2-240 (753)
69 3v7d_B Cell division control p 100.0 6.8E-33 2.3E-37 230.7 29.9 212 6-226 153-389 (464)
70 4aez_A CDC20, WD repeat-contai 100.0 5.5E-33 1.9E-37 227.7 28.9 212 12-227 88-302 (401)
71 3jrp_A Fusion protein of prote 100.0 2.2E-33 7.5E-38 226.7 26.0 212 6-219 46-288 (379)
72 1gxr_A ESG1, transducin-like e 100.0 1.3E-32 4.6E-37 218.7 30.0 206 11-222 47-259 (337)
73 1yfq_A Cell cycle arrest prote 100.0 6.3E-33 2.2E-37 221.6 27.7 216 9-228 5-292 (342)
74 2xyi_A Probable histone-bindin 100.0 2.9E-33 9.9E-38 231.5 26.5 213 5-219 171-411 (430)
75 1r5m_A SIR4-interacting protei 100.0 8.3E-33 2.8E-37 226.3 28.9 201 14-220 107-363 (425)
76 1k8k_C P40, ARP2/3 complex 41 100.0 4.4E-33 1.5E-37 224.7 26.5 208 7-218 44-274 (372)
77 3sfz_A APAF-1, apoptotic pepti 100.0 7.9E-33 2.7E-37 254.4 31.4 215 10-228 610-881 (1249)
78 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-32 4.2E-37 228.8 29.7 214 11-228 98-354 (450)
79 3mkq_A Coatomer beta'-subunit; 100.0 4E-33 1.4E-37 246.3 28.2 220 7-228 47-269 (814)
80 3ei3_B DNA damage-binding prot 100.0 1.1E-32 3.9E-37 224.0 28.2 210 11-227 114-348 (383)
81 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-32 7.7E-37 226.3 30.2 204 12-228 130-335 (435)
82 4a11_B DNA excision repair pro 100.0 2.8E-32 9.6E-37 222.2 30.1 211 12-226 96-373 (408)
83 3i2n_A WD repeat-containing pr 100.0 3E-33 1E-37 224.3 23.7 215 9-225 12-250 (357)
84 4a11_B DNA excision repair pro 100.0 2.5E-32 8.6E-37 222.5 29.4 214 7-224 35-282 (408)
85 2xyi_A Probable histone-bindin 100.0 5.7E-33 1.9E-37 229.8 25.8 207 11-218 124-353 (430)
86 1pgu_A Actin interacting prote 100.0 1.8E-32 6E-37 234.7 29.5 217 6-228 54-293 (615)
87 3zwl_B Eukaryotic translation 100.0 8.1E-32 2.8E-36 216.6 31.1 218 6-228 65-314 (369)
88 4aez_A CDC20, WD repeat-contai 100.0 4.3E-32 1.5E-36 222.4 29.9 206 13-224 132-342 (401)
89 4gga_A P55CDC, cell division c 100.0 3.4E-32 1.2E-36 224.3 29.5 212 11-226 143-403 (420)
90 3dw8_B Serine/threonine-protei 100.0 5.7E-33 1.9E-37 229.5 24.4 211 7-222 73-377 (447)
91 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-32 7.8E-37 227.3 27.6 206 16-226 5-279 (450)
92 3gre_A Serine/threonine-protei 100.0 4.3E-33 1.5E-37 230.2 22.8 212 13-228 109-369 (437)
93 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4E-32 1.4E-36 225.2 28.5 209 7-228 110-318 (445)
94 3i2n_A WD repeat-containing pr 100.0 1.6E-32 5.3E-37 220.2 24.3 204 12-219 62-292 (357)
95 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-33 9.4E-38 236.7 20.2 211 14-228 132-396 (524)
96 1p22_A F-BOX/WD-repeat protein 100.0 4.6E-32 1.6E-36 224.4 26.5 209 6-228 164-384 (435)
97 2w18_A PALB2, fancn, partner a 100.0 3.2E-32 1.1E-36 215.5 23.7 196 16-217 112-356 (356)
98 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-31 6.3E-36 210.2 28.0 209 8-228 52-265 (313)
99 1pgu_A Actin interacting prote 100.0 5.4E-32 1.9E-36 231.6 26.3 209 11-225 14-245 (615)
100 4aow_A Guanine nucleotide-bind 100.0 6.9E-31 2.3E-35 209.4 30.6 215 7-227 78-295 (340)
101 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.2E-31 1.4E-35 219.1 30.3 208 6-227 150-357 (445)
102 4ggc_A P55CDC, cell division c 100.0 8.9E-31 3E-35 206.9 30.7 205 11-220 63-317 (318)
103 4e54_B DNA damage-binding prot 100.0 3.1E-32 1.1E-36 225.6 22.6 213 10-226 159-395 (435)
104 3vu4_A KMHSV2; beta-propeller 100.0 3.4E-31 1.2E-35 214.1 26.5 203 10-219 14-272 (355)
105 4h5i_A Guanine nucleotide-exch 100.0 7.6E-31 2.6E-35 212.8 28.2 165 59-228 135-311 (365)
106 3jro_A Fusion protein of prote 100.0 7.5E-32 2.6E-36 237.3 22.6 212 6-219 44-286 (753)
107 4gga_A P55CDC, cell division c 100.0 3.5E-30 1.2E-34 212.3 31.2 205 18-228 108-320 (420)
108 3lrv_A PRE-mRNA-splicing facto 100.0 7.9E-32 2.7E-36 216.5 19.7 197 21-226 42-252 (343)
109 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-30 4.1E-35 240.0 29.7 209 7-218 649-913 (1249)
110 4ggc_A P55CDC, cell division c 100.0 7.4E-30 2.5E-34 201.6 30.0 205 18-229 28-284 (318)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-31 1.7E-35 216.0 22.7 201 17-221 36-257 (402)
112 4gq1_A NUP37; propeller, trans 100.0 4.4E-31 1.5E-35 216.2 21.3 205 8-216 129-387 (393)
113 3mmy_A MRNA export factor; mRN 100.0 1.2E-30 4E-35 209.7 23.0 204 9-216 80-344 (368)
114 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-31 7.3E-36 238.2 20.6 215 10-227 430-741 (902)
115 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-30 4E-35 209.7 23.0 197 16-219 77-293 (343)
116 2j04_A TAU60, YPL007P, hypothe 100.0 9.8E-31 3.4E-35 219.0 23.0 195 13-217 83-296 (588)
117 4gq1_A NUP37; propeller, trans 100.0 7.4E-32 2.5E-36 220.7 16.0 214 14-227 88-357 (393)
118 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-30 5.1E-35 217.9 22.2 196 13-221 13-257 (588)
119 1yfq_A Cell cycle arrest prote 100.0 5.7E-29 2E-33 198.6 22.2 198 9-215 93-321 (342)
120 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-28 9.2E-33 194.0 22.9 175 6-181 48-344 (351)
121 3bws_A Protein LP49; two-domai 100.0 2.8E-26 9.6E-31 188.9 30.4 212 10-227 164-399 (433)
122 3vu4_A KMHSV2; beta-propeller 100.0 4.8E-27 1.6E-31 189.7 24.3 198 16-218 59-336 (355)
123 1l0q_A Surface layer protein; 100.0 6.1E-26 2.1E-30 184.6 30.7 212 8-228 25-243 (391)
124 2w18_A PALB2, fancn, partner a 100.0 9.5E-28 3.2E-32 190.0 19.1 161 8-172 171-355 (356)
125 1l0q_A Surface layer protein; 100.0 1.2E-25 4.2E-30 182.8 31.7 212 8-228 67-285 (391)
126 3bws_A Protein LP49; two-domai 99.9 7.6E-26 2.6E-30 186.3 21.9 211 10-227 118-343 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.6E-24 1.6E-28 175.8 28.8 211 8-228 171-396 (415)
128 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-24 3.6E-29 180.6 19.5 199 15-219 36-279 (434)
129 2ojh_A Uncharacterized protein 99.9 9.1E-23 3.1E-27 158.6 21.0 206 10-221 36-261 (297)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.4E-22 1.2E-26 164.6 23.6 206 9-222 111-348 (415)
131 1nir_A Nitrite reductase; hemo 99.9 1.1E-21 3.6E-26 166.8 27.0 215 8-228 172-419 (543)
132 1nir_A Nitrite reductase; hemo 99.9 2.1E-21 7.1E-26 165.0 27.4 200 22-227 144-364 (543)
133 2oit_A Nucleoporin 214KDA; NH2 99.9 2.7E-22 9.1E-27 166.2 17.2 159 14-175 91-279 (434)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-21 8.4E-26 169.7 23.4 205 15-226 36-329 (741)
135 3vgz_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 148.4 27.2 208 16-228 89-313 (353)
136 3vgz_A Uncharacterized protein 99.9 7.4E-20 2.5E-24 146.3 27.9 208 15-227 40-271 (353)
137 3u4y_A Uncharacterized protein 99.9 9.8E-20 3.3E-24 144.7 27.6 205 10-221 35-255 (331)
138 1pby_B Quinohemoprotein amine 99.9 7.9E-20 2.7E-24 145.0 26.1 203 17-228 35-320 (337)
139 1ri6_A Putative isomerase YBHE 99.9 6E-20 2.1E-24 146.0 23.9 209 13-226 35-274 (343)
140 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-21 7.1E-26 169.7 16.2 203 16-225 17-296 (723)
141 2ecf_A Dipeptidyl peptidase IV 99.9 2E-20 7E-25 163.9 19.9 203 17-227 110-376 (741)
142 1ri6_A Putative isomerase YBHE 99.9 3.7E-19 1.3E-23 141.4 24.2 199 17-220 85-312 (343)
143 3u4y_A Uncharacterized protein 99.9 2.1E-18 7E-23 137.0 27.9 202 21-227 3-219 (331)
144 3hfq_A Uncharacterized protein 99.9 2.1E-18 7.1E-23 138.1 27.7 209 11-222 81-323 (347)
145 2z3z_A Dipeptidyl aminopeptida 99.8 1.1E-19 3.7E-24 158.6 21.2 208 16-228 82-353 (706)
146 1jmx_B Amine dehydrogenase; ox 99.8 5.5E-19 1.9E-23 140.9 23.4 203 17-228 44-335 (349)
147 2ojh_A Uncharacterized protein 99.8 2.4E-19 8.1E-24 139.2 19.3 194 11-209 79-293 (297)
148 1k32_A Tricorn protease; prote 99.8 6.3E-19 2.2E-23 160.2 21.9 206 10-227 240-469 (1045)
149 3hfq_A Uncharacterized protein 99.8 8.8E-18 3E-22 134.4 25.3 210 13-226 37-282 (347)
150 3o4h_A Acylamino-acid-releasin 99.8 1.8E-18 6.3E-23 147.8 21.6 200 15-227 21-235 (582)
151 1xfd_A DIP, dipeptidyl aminope 99.8 8E-19 2.7E-23 153.3 19.5 205 10-220 52-347 (723)
152 1jmx_B Amine dehydrogenase; ox 99.8 6.6E-18 2.2E-22 134.6 22.8 157 21-182 5-183 (349)
153 2z3z_A Dipeptidyl aminopeptida 99.8 4E-18 1.4E-22 148.6 23.3 198 18-220 183-437 (706)
154 1k32_A Tricorn protease; prote 99.8 8.9E-19 3E-23 159.2 19.8 198 14-220 294-504 (1045)
155 1pby_B Quinohemoprotein amine 99.8 1.3E-17 4.4E-22 132.2 24.0 191 28-227 2-278 (337)
156 1z68_A Fibroblast activation p 99.8 1.4E-19 4.6E-24 158.3 12.6 199 19-225 19-298 (719)
157 3o4h_A Acylamino-acid-releasin 99.8 8.1E-18 2.8E-22 143.9 16.7 199 10-223 58-279 (582)
158 4a5s_A Dipeptidyl peptidase 4 99.8 1.6E-17 5.3E-22 146.0 17.8 200 14-220 15-296 (740)
159 3scy_A Hypothetical bacterial 99.8 7.7E-16 2.6E-20 123.8 26.3 199 14-217 48-290 (361)
160 1z68_A Fibroblast activation p 99.8 6.5E-18 2.2E-22 147.7 15.2 199 17-220 61-348 (719)
161 3fvz_A Peptidyl-glycine alpha- 99.8 6.9E-16 2.4E-20 123.0 24.3 209 15-226 23-285 (329)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.7E-16 3E-20 124.1 25.1 204 15-222 39-296 (365)
163 3scy_A Hypothetical bacterial 99.8 2.4E-15 8.3E-20 120.9 27.2 204 14-223 98-344 (361)
164 3azo_A Aminopeptidase; POP fam 99.7 3E-16 1E-20 135.9 22.2 203 14-223 128-374 (662)
165 1q7f_A NHL, brain tumor CG1071 99.7 2.7E-15 9.4E-20 116.8 25.5 200 13-221 74-283 (286)
166 1q7f_A NHL, brain tumor CG1071 99.7 8.3E-15 2.8E-19 114.1 27.5 205 13-226 27-245 (286)
167 1jof_A Carboxy-CIS,CIS-muconat 99.7 9.3E-16 3.2E-20 123.9 22.8 201 18-219 85-342 (365)
168 3azo_A Aminopeptidase; POP fam 99.7 2.3E-16 8E-21 136.6 19.9 211 10-227 62-333 (662)
169 2xdw_A Prolyl endopeptidase; a 99.7 6.1E-15 2.1E-19 129.0 28.2 210 13-227 122-377 (710)
170 2oiz_A Aromatic amine dehydrog 99.7 9E-15 3.1E-19 118.1 25.2 207 10-225 46-343 (361)
171 3pe7_A Oligogalacturonate lyas 99.7 4.1E-15 1.4E-19 120.4 22.9 209 8-221 23-276 (388)
172 2gop_A Trilobed protease; beta 99.7 8.3E-15 2.8E-19 116.9 23.7 191 16-224 59-297 (347)
173 3no2_A Uncharacterized protein 99.7 8.7E-15 3E-19 114.0 22.6 192 26-226 4-203 (276)
174 3e5z_A Putative gluconolactona 99.7 2E-14 6.8E-19 112.6 24.2 206 11-227 23-254 (296)
175 2dg1_A DRP35, lactonase; beta 99.7 2.1E-13 7.1E-18 108.3 29.3 209 11-226 40-270 (333)
176 4a5s_A Dipeptidyl peptidase 4 99.7 5.9E-15 2E-19 129.7 20.5 200 19-223 65-358 (740)
177 2bkl_A Prolyl endopeptidase; m 99.7 1.1E-14 3.8E-19 127.1 21.1 208 13-227 118-359 (695)
178 3fvz_A Peptidyl-glycine alpha- 99.7 1.3E-13 4.4E-18 109.8 24.8 200 13-218 88-322 (329)
179 3c5m_A Oligogalacturonate lyas 99.6 1.8E-15 6.3E-20 122.5 12.9 201 18-223 38-278 (396)
180 1rwi_B Serine/threonine-protei 99.6 1.4E-13 4.7E-18 106.0 21.5 199 16-220 67-266 (270)
181 3e5z_A Putative gluconolactona 99.6 2.3E-13 7.8E-18 106.5 22.9 203 10-221 63-289 (296)
182 3pe7_A Oligogalacturonate lyas 99.6 1.3E-13 4.6E-18 111.4 22.1 207 11-222 76-333 (388)
183 2gop_A Trilobed protease; beta 99.6 1.2E-13 4.2E-18 110.1 21.1 188 18-226 106-337 (347)
184 1yr2_A Prolyl oligopeptidase; 99.6 3.6E-13 1.2E-17 118.4 24.4 207 13-226 160-402 (741)
185 1xip_A Nucleoporin NUP159; bet 99.6 1.1E-13 3.7E-18 112.2 18.7 170 17-204 39-230 (388)
186 3c5m_A Oligogalacturonate lyas 99.6 6.5E-14 2.2E-18 113.3 15.7 196 19-221 84-332 (396)
187 2oiz_A Aromatic amine dehydrog 99.6 3E-12 1E-16 103.4 25.0 144 26-173 14-181 (361)
188 1rwi_B Serine/threonine-protei 99.6 1E-12 3.5E-17 101.1 20.8 199 17-221 25-225 (270)
189 3no2_A Uncharacterized protein 99.6 3.4E-12 1.1E-16 99.3 23.7 208 8-225 28-259 (276)
190 3dsm_A Uncharacterized protein 99.6 2.6E-12 8.8E-17 102.3 23.1 209 9-227 78-310 (328)
191 2xdw_A Prolyl endopeptidase; a 99.5 1.6E-12 5.4E-17 113.8 23.0 200 17-220 172-416 (710)
192 1qks_A Cytochrome CD1 nitrite 99.5 1.6E-11 5.5E-16 104.6 28.4 208 16-227 197-437 (567)
193 2dg1_A DRP35, lactonase; beta 99.5 6.2E-13 2.1E-17 105.6 18.4 195 16-218 6-213 (333)
194 1qks_A Cytochrome CD1 nitrite 99.5 1.8E-11 6.3E-16 104.2 28.0 199 24-227 164-382 (567)
195 2z2n_A Virginiamycin B lyase; 99.5 3.1E-11 1E-15 93.8 26.9 203 11-221 10-215 (299)
196 2z2n_A Virginiamycin B lyase; 99.5 9.3E-11 3.2E-15 91.1 27.4 198 14-220 55-256 (299)
197 2bkl_A Prolyl endopeptidase; m 99.5 2.9E-12 9.8E-17 111.9 19.5 197 19-221 171-400 (695)
198 3hrp_A Uncharacterized protein 99.5 3.3E-11 1.1E-15 98.8 24.3 199 16-221 131-357 (409)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.4E-11 2.2E-15 92.9 24.5 199 14-219 69-300 (314)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.7E-11 9.2E-16 95.1 22.2 204 15-226 17-264 (314)
201 3g4e_A Regucalcin; six bladed 99.5 2.2E-10 7.6E-15 89.7 27.2 204 17-228 14-239 (297)
202 2hz6_A Endoplasmic reticulum t 99.5 2.5E-14 8.4E-19 116.0 3.8 188 26-226 8-200 (369)
203 3iuj_A Prolyl endopeptidase; h 99.4 4E-11 1.4E-15 104.7 22.9 207 12-225 125-365 (693)
204 3g4e_A Regucalcin; six bladed 99.4 2.9E-10 9.8E-15 89.1 24.9 178 14-194 52-249 (297)
205 2qc5_A Streptogramin B lactona 99.4 8.1E-10 2.8E-14 85.8 26.8 199 14-221 18-220 (300)
206 2qc5_A Streptogramin B lactona 99.4 9.3E-10 3.2E-14 85.4 26.4 195 15-217 61-259 (300)
207 1xip_A Nucleoporin NUP159; bet 99.4 3.2E-11 1.1E-15 97.8 18.3 135 13-160 86-230 (388)
208 3dsm_A Uncharacterized protein 99.4 2.3E-10 7.8E-15 91.0 23.1 196 16-221 44-256 (328)
209 2mad_H Methylamine dehydrogena 99.4 2.4E-09 8.1E-14 86.8 28.0 196 20-225 70-357 (373)
210 1yr2_A Prolyl oligopeptidase; 99.4 9.5E-11 3.3E-15 103.0 20.7 199 18-221 211-444 (741)
211 2ghs_A AGR_C_1268P; regucalcin 99.3 3E-09 1E-13 84.5 26.1 197 18-226 51-267 (326)
212 3hrp_A Uncharacterized protein 99.3 2.2E-09 7.5E-14 88.0 22.7 189 21-216 176-408 (409)
213 2ghs_A AGR_C_1268P; regucalcin 99.3 1.2E-08 4.1E-13 80.9 25.8 186 15-208 89-293 (326)
214 3c75_H MADH, methylamine dehyd 99.2 5.7E-09 1.9E-13 85.7 23.5 203 20-225 122-409 (426)
215 2mad_H Methylamine dehydrogena 99.2 2.4E-08 8.3E-13 80.8 27.1 144 22-172 27-194 (373)
216 3sjl_D Methylamine dehydrogena 99.2 1.8E-09 6.2E-14 87.3 20.2 192 20-220 37-258 (386)
217 3sjl_D Methylamine dehydrogena 99.2 1.7E-09 5.8E-14 87.4 18.2 204 20-227 82-329 (386)
218 3dr2_A Exported gluconolactona 99.2 1.8E-08 6E-13 79.1 23.6 198 15-226 44-274 (305)
219 1yiq_A Quinohemoprotein alcoho 99.2 1.2E-08 4.1E-13 89.0 23.6 188 36-227 182-514 (689)
220 2qe8_A Uncharacterized protein 99.2 3.7E-09 1.3E-13 84.5 18.7 201 16-221 17-281 (343)
221 2qe8_A Uncharacterized protein 99.2 9.1E-09 3.1E-13 82.2 20.9 196 13-211 64-314 (343)
222 1mda_H Methylamine dehydrogena 99.2 2.6E-09 8.8E-14 86.2 17.2 201 20-228 69-356 (368)
223 3dr2_A Exported gluconolactona 99.1 1.6E-08 5.5E-13 79.3 20.7 192 11-212 81-301 (305)
224 1npe_A Nidogen, entactin; glyc 99.1 6.2E-07 2.1E-11 68.8 28.4 206 17-227 37-247 (267)
225 1kb0_A Quinohemoprotein alcoho 99.1 2.4E-08 8.3E-13 86.9 22.6 196 28-227 175-516 (677)
226 2iwa_A Glutamine cyclotransfer 99.0 1.9E-07 6.5E-12 71.7 21.6 206 6-219 10-238 (266)
227 3c75_H MADH, methylamine dehyd 99.0 1.1E-07 3.8E-12 78.0 20.8 186 25-219 82-296 (426)
228 2hz6_A Endoplasmic reticulum t 99.0 6.2E-11 2.1E-15 95.9 0.2 147 68-225 8-156 (369)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.9E-07 6.6E-12 75.2 20.6 189 27-225 53-265 (376)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.0 7E-07 2.4E-11 71.8 23.8 187 29-227 145-346 (376)
231 3iuj_A Prolyl endopeptidase; h 99.0 1E-07 3.5E-12 83.2 20.1 196 19-221 178-408 (693)
232 3nol_A Glutamine cyclotransfer 98.9 5.8E-07 2E-11 68.5 21.0 191 6-205 32-243 (262)
233 1yiq_A Quinohemoprotein alcoho 98.9 1.6E-07 5.5E-12 81.9 19.6 185 19-207 238-538 (689)
234 3hxj_A Pyrrolo-quinoline quino 98.9 4.7E-07 1.6E-11 71.2 19.4 184 27-225 107-290 (330)
235 3mbr_X Glutamine cyclotransfer 98.9 2.5E-06 8.6E-11 64.4 22.0 192 6-206 10-223 (243)
236 1kb0_A Quinohemoprotein alcoho 98.9 3.7E-07 1.3E-11 79.5 20.0 197 17-217 244-566 (677)
237 2ece_A 462AA long hypothetical 98.9 2.9E-06 1E-10 69.5 23.5 199 25-227 93-364 (462)
238 3v64_C Agrin; beta propeller, 98.8 1.4E-05 4.8E-10 63.9 26.3 205 17-225 74-282 (349)
239 1kv9_A Type II quinohemoprotei 98.8 1.9E-06 6.4E-11 75.0 22.0 189 36-227 177-497 (668)
240 3v65_B Low-density lipoprotein 98.8 8.6E-06 2.9E-10 66.1 24.6 207 16-226 116-326 (386)
241 3nok_A Glutaminyl cyclase; bet 98.8 2.4E-06 8.1E-11 65.2 19.6 191 6-206 44-254 (268)
242 1npe_A Nidogen, entactin; glyc 98.8 2.2E-05 7.6E-10 60.0 25.1 190 28-221 2-201 (267)
243 3hxj_A Pyrrolo-quinoline quino 98.8 5.3E-07 1.8E-11 70.8 16.1 191 16-221 137-327 (330)
244 1mda_H Methylamine dehydrogena 98.7 7E-07 2.4E-11 72.0 16.6 112 17-130 20-158 (368)
245 2xe4_A Oligopeptidase B; hydro 98.7 3.5E-06 1.2E-10 74.2 21.6 195 13-214 170-394 (751)
246 3qqz_A Putative uncharacterize 98.7 4.1E-05 1.4E-09 58.4 25.1 202 9-215 20-250 (255)
247 3p5b_L Low density lipoprotein 98.7 8E-05 2.7E-09 60.7 27.8 208 15-226 111-328 (400)
248 2ece_A 462AA long hypothetical 98.7 8.5E-06 2.9E-10 66.8 21.1 152 20-173 142-351 (462)
249 3sov_A LRP-6, low-density lipo 98.7 6.9E-05 2.4E-09 59.1 25.7 206 17-226 36-246 (318)
250 1fwx_A Nitrous oxide reductase 98.6 6.1E-06 2.1E-10 69.9 19.2 199 24-228 98-381 (595)
251 2ad6_A Methanol dehydrogenase 98.6 2.1E-05 7.3E-10 67.1 22.8 196 28-227 161-503 (571)
252 2fp8_A Strictosidine synthase; 98.6 8.2E-05 2.8E-09 58.5 24.9 200 17-226 20-276 (322)
253 2iwa_A Glutamine cyclotransfer 98.6 2.9E-05 9.8E-10 59.6 21.2 172 48-227 10-190 (266)
254 1ijq_A LDL receptor, low-densi 98.6 0.0001 3.5E-09 58.0 28.3 206 16-225 30-245 (316)
255 1flg_A Protein (quinoprotein e 98.6 4.7E-05 1.6E-09 65.1 24.1 195 29-227 170-525 (582)
256 1w6s_A Methanol dehydrogenase 98.6 4.8E-05 1.7E-09 65.2 23.6 187 36-227 181-512 (599)
257 1kv9_A Type II quinohemoprotei 98.5 1.1E-05 3.6E-10 70.2 19.1 194 27-225 66-340 (668)
258 3m0c_C LDL receptor, low-densi 98.5 0.00025 8.6E-09 62.7 26.0 206 16-225 424-639 (791)
259 3v65_B Low-density lipoprotein 98.5 0.00032 1.1E-08 56.8 24.7 198 17-219 78-278 (386)
260 1fwx_A Nitrous oxide reductase 98.5 2.1E-05 7.1E-10 66.6 18.0 200 17-220 135-433 (595)
261 2p4o_A Hypothetical protein; p 98.5 0.00027 9.2E-09 55.2 23.8 198 16-221 32-244 (306)
262 2fp8_A Strictosidine synthase; 98.4 0.0002 6.9E-09 56.2 23.0 195 17-219 81-314 (322)
263 3v64_C Agrin; beta propeller, 98.4 0.00033 1.1E-08 56.0 25.5 200 15-219 33-235 (349)
264 3nok_A Glutaminyl cyclase; bet 98.4 0.00014 4.8E-09 55.4 20.6 169 48-227 44-219 (268)
265 3nol_A Glutamine cyclotransfer 98.4 0.00021 7.1E-09 54.4 20.7 169 49-227 33-210 (262)
266 1flg_A Protein (quinoprotein e 98.4 0.00013 4.5E-09 62.3 21.3 183 20-207 250-549 (582)
267 3amr_A 3-phytase; beta-propell 98.4 0.00053 1.8E-08 54.5 23.9 203 19-226 29-272 (355)
268 1k3i_A Galactose oxidase precu 98.4 9.3E-05 3.2E-09 64.2 20.4 111 20-130 190-323 (656)
269 1w6s_A Methanol dehydrogenase 98.3 0.00027 9.3E-09 60.6 22.2 161 20-184 245-513 (599)
270 2ad6_A Methanol dehydrogenase 98.3 0.0003 1E-08 60.0 21.5 161 20-184 239-504 (571)
271 1n7d_A LDL receptor, low-densi 98.3 1.5E-05 5.2E-10 69.6 13.3 207 17-227 407-623 (699)
272 3mbr_X Glutamine cyclotransfer 98.2 0.0007 2.4E-08 51.0 22.0 170 48-227 10-188 (243)
273 3tc9_A Hypothetical hydrolase; 98.2 0.00097 3.3E-08 54.8 23.1 155 17-174 138-301 (430)
274 3s94_A LRP-6, low-density lipo 98.1 0.0018 6.2E-08 55.7 23.6 206 16-225 40-250 (619)
275 4a2l_A BT_4663, two-component 98.1 0.0039 1.3E-07 55.2 28.0 195 15-222 356-575 (795)
276 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0043 1.5E-07 53.5 27.0 204 16-225 37-244 (628)
277 4a2l_A BT_4663, two-component 98.0 0.0072 2.5E-07 53.4 27.7 193 15-221 405-617 (795)
278 3m0c_C LDL receptor, low-densi 98.0 0.0078 2.7E-07 53.3 24.8 182 35-219 402-590 (791)
279 1ijq_A LDL receptor, low-densi 98.0 0.0037 1.3E-07 49.0 25.4 185 29-218 3-195 (316)
280 2xe4_A Oligopeptidase B; hydro 98.0 0.0022 7.6E-08 56.5 21.1 150 19-170 224-394 (751)
281 4hw6_A Hypothetical protein, I 97.9 0.0045 1.5E-07 50.9 21.4 199 17-219 140-374 (433)
282 2p4o_A Hypothetical protein; p 97.8 0.0058 2E-07 47.5 21.9 174 16-194 72-263 (306)
283 3p5b_L Low density lipoprotein 97.8 0.0081 2.8E-07 48.8 27.3 188 28-219 84-278 (400)
284 2p9w_A MAL S 1 allergenic prot 97.8 0.0067 2.3E-07 47.8 22.7 195 19-218 16-265 (334)
285 4a0p_A LRP6, LRP-6, low-densit 97.8 0.013 4.6E-07 50.4 28.1 202 16-223 340-554 (628)
286 3v9f_A Two-component system se 97.8 0.01 3.5E-07 52.3 22.0 195 15-221 362-571 (781)
287 3s94_A LRP-6, low-density lipo 97.7 0.017 5.7E-07 49.8 24.8 199 17-219 350-552 (619)
288 3sov_A LRP-6, low-density lipo 97.7 0.011 3.8E-07 46.4 21.4 175 17-194 80-258 (318)
289 3tc9_A Hypothetical hydrolase; 97.7 0.0045 1.5E-07 50.8 17.2 154 60-217 139-300 (430)
290 4hw6_A Hypothetical protein, I 97.6 0.02 7E-07 46.9 22.6 155 15-172 181-372 (433)
291 3v9f_A Two-component system se 97.6 0.035 1.2E-06 48.9 26.7 198 14-221 311-527 (781)
292 3kya_A Putative phosphatase; s 97.6 0.026 8.8E-07 47.1 22.3 155 17-173 140-340 (496)
293 2xbg_A YCF48-like protein; pho 97.5 0.022 7.4E-07 44.8 25.1 190 16-216 122-320 (327)
294 1n7d_A LDL receptor, low-densi 97.3 0.00077 2.6E-08 58.9 8.4 180 36-218 385-571 (699)
295 2xbg_A YCF48-like protein; pho 97.3 0.038 1.3E-06 43.3 17.4 153 14-172 161-320 (327)
296 3kya_A Putative phosphatase; s 97.2 0.069 2.4E-06 44.6 24.1 206 16-225 186-482 (496)
297 2vpj_A Kelch-like protein 12; 97.2 0.049 1.7E-06 41.9 16.7 184 26-220 62-280 (301)
298 3qqz_A Putative uncharacterize 97.1 0.051 1.7E-06 41.2 21.2 166 57-226 26-211 (255)
299 3amr_A 3-phytase; beta-propell 97.0 0.085 2.9E-06 41.9 16.9 151 69-225 40-222 (355)
300 2p9w_A MAL S 1 allergenic prot 97.0 0.086 3E-06 41.5 18.6 158 59-219 14-216 (334)
301 3ii7_A Kelch-like protein 7; p 97.0 0.071 2.4E-06 41.1 16.2 185 26-220 55-274 (306)
302 2xzh_A Clathrin heavy chain 1; 97.0 0.088 3E-06 41.5 25.2 197 20-224 71-296 (365)
303 2ism_A Putative oxidoreductase 96.9 0.11 3.6E-06 41.3 22.0 142 17-162 32-221 (352)
304 2xn4_A Kelch-like protein 2; s 96.9 0.072 2.5E-06 40.9 15.2 185 26-220 61-278 (302)
305 1tl2_A L10, protein (tachylect 96.9 0.067 2.3E-06 39.6 13.9 103 16-124 41-157 (236)
306 3pbp_A Nucleoporin NUP82; beta 96.8 0.15 5.1E-06 41.6 18.7 141 68-213 31-207 (452)
307 1bpo_A Protein (clathrin); cla 96.8 0.17 5.6E-06 41.6 24.3 197 20-224 70-295 (494)
308 2vpj_A Kelch-like protein 12; 96.7 0.14 4.7E-06 39.3 15.4 185 26-220 14-233 (301)
309 2be1_A Serine/threonine-protei 96.4 0.0078 2.7E-07 47.7 6.8 191 28-222 11-235 (339)
310 4asc_A Kelch repeat and BTB do 96.4 0.23 8E-06 38.4 17.1 152 18-175 37-222 (315)
311 2xn4_A Kelch-like protein 2; s 96.4 0.19 6.5E-06 38.5 14.5 183 27-220 16-231 (302)
312 2xzh_A Clathrin heavy chain 1; 96.4 0.27 9.3E-06 38.8 22.3 182 35-220 124-334 (365)
313 1zgk_A Kelch-like ECH-associat 96.3 0.18 6.2E-06 38.9 14.1 184 26-220 70-289 (308)
314 3ei3_A DNA damage-binding prot 96.2 0.69 2.4E-05 42.8 19.4 142 27-174 844-999 (1158)
315 3ii7_A Kelch-like protein 7; p 96.2 0.31 1.1E-05 37.4 15.7 182 28-220 13-227 (306)
316 1k3i_A Galactose oxidase precu 96.1 0.072 2.5E-06 46.0 11.8 112 62-175 190-324 (656)
317 3ei3_A DNA damage-binding prot 96.1 0.89 3.1E-05 42.1 22.6 171 38-218 808-999 (1158)
318 3a9g_A Putative uncharacterize 96.0 0.42 1.5E-05 37.9 21.1 198 17-218 30-296 (354)
319 3pbp_A Nucleoporin NUP82; beta 95.9 0.55 1.9E-05 38.3 18.2 134 35-170 39-208 (452)
320 1xi4_A Clathrin heavy chain; a 95.9 0.35 1.2E-05 45.5 15.6 195 21-223 71-294 (1630)
321 1zgk_A Kelch-like ECH-associat 95.8 0.37 1.3E-05 37.1 13.8 187 23-220 21-242 (308)
322 1cru_A Protein (soluble quinop 95.8 0.67 2.3E-05 38.2 17.7 103 17-119 28-163 (454)
323 2uvk_A YJHT; unknown function, 95.6 0.45 1.5E-05 37.4 13.9 52 26-78 65-128 (357)
324 1bpo_A Protein (clathrin); cla 95.6 0.76 2.6E-05 37.7 22.1 181 35-219 123-332 (494)
325 2woz_A Kelch repeat and BTB do 95.5 0.64 2.2E-05 35.9 16.2 149 22-175 52-232 (318)
326 1tl2_A L10, protein (tachylect 95.0 0.55 1.9E-05 34.8 11.3 138 25-170 2-159 (236)
327 1xi4_A Clathrin heavy chain; a 94.9 1.8 6.2E-05 40.9 16.5 210 7-222 95-335 (1630)
328 2zwa_A Leucine carboxyl methyl 94.4 2.3 7.8E-05 37.1 16.7 194 25-221 396-638 (695)
329 2g8s_A Glucose/sorbosone dehyd 94.3 1.6 5.3E-05 34.5 20.5 142 17-160 19-214 (353)
330 3sre_A PON1, serum paraoxonase 94.1 1.7 6E-05 34.5 18.7 150 19-174 53-252 (355)
331 4asc_A Kelch repeat and BTB do 93.7 1.8 6.1E-05 33.2 17.7 179 30-220 8-223 (315)
332 2be1_A Serine/threonine-protei 93.1 0.46 1.6E-05 37.5 8.3 115 69-183 10-139 (339)
333 2ism_A Putative oxidoreductase 92.8 2.9 9.9E-05 32.9 13.1 100 59-162 32-153 (352)
334 3qhy_B Beta-lactamase inhibito 90.2 5 0.00017 30.6 15.9 184 17-219 64-247 (282)
335 3das_A Putative oxidoreductase 90.1 5.9 0.0002 31.3 16.9 143 16-160 32-218 (347)
336 3das_A Putative oxidoreductase 89.3 6.9 0.00024 30.9 14.6 104 58-162 32-158 (347)
337 2woz_A Kelch repeat and BTB do 89.2 6.1 0.00021 30.2 16.7 173 38-220 25-233 (318)
338 3qhy_B Beta-lactamase inhibito 88.1 7.2 0.00025 29.6 15.0 183 17-218 25-207 (282)
339 2zwa_A Leucine carboxyl methyl 87.0 15 0.0005 32.0 13.4 148 26-175 451-636 (695)
340 3sre_A PON1, serum paraoxonase 86.5 11 0.00036 29.9 17.3 154 17-172 113-296 (355)
341 4gq2_M Nucleoporin NUP120; bet 86.1 6.8 0.00023 35.5 10.8 37 188-226 238-274 (950)
342 3a9g_A Putative uncharacterize 85.9 11 0.00038 29.6 17.7 101 59-162 30-153 (354)
343 2uvk_A YJHT; unknown function, 83.9 13 0.00045 28.8 16.0 94 26-120 19-128 (357)
344 3f7f_A Nucleoporin NUP120; nuc 83.5 2.5 8.7E-05 36.8 6.5 29 199-227 231-259 (729)
345 1cru_A Protein (soluble quinop 83.2 18 0.0006 29.7 21.8 104 58-162 27-162 (454)
346 3ott_A Two-component system se 83.2 23 0.00077 30.9 23.8 190 16-220 63-262 (758)
347 3sbq_A Nitrous-oxide reductase 81.8 19 0.00067 30.6 10.8 71 59-130 324-408 (638)
348 4gq2_M Nucleoporin NUP120; bet 81.7 2.8 9.7E-05 37.9 6.4 38 17-54 237-274 (950)
349 2wg3_C Hedgehog-interacting pr 79.4 25 0.00085 28.9 13.4 103 18-120 16-159 (463)
350 4fhn_B Nucleoporin NUP120; pro 76.8 3 0.0001 38.5 5.1 30 197-226 247-276 (1139)
351 4fhn_B Nucleoporin NUP120; pro 76.8 2.5 8.6E-05 39.1 4.6 38 17-54 239-276 (1139)
352 2g8s_A Glucose/sorbosone dehyd 74.8 28 0.00096 27.2 17.9 102 59-162 19-148 (353)
353 3f7f_A Nucleoporin NUP120; nuc 72.7 7.2 0.00025 34.1 6.0 37 17-55 223-259 (729)
354 3zwu_A Alkaline phosphatase PH 70.5 25 0.00087 30.0 8.9 57 61-117 479-548 (592)
355 3zwu_A Alkaline phosphatase PH 62.5 36 0.0012 29.1 8.2 58 18-75 478-548 (592)
356 4a9v_A PHOX; hydrolase, beta-p 57.5 62 0.0021 27.6 8.7 59 17-75 477-548 (592)
357 2wg3_C Hedgehog-interacting pr 55.9 84 0.0029 25.8 14.9 105 59-164 15-159 (463)
358 3sbq_A Nitrous-oxide reductase 55.4 63 0.0022 27.6 8.3 71 103-174 326-408 (638)
359 3uc1_A DNA gyrase subunit A; D 54.9 73 0.0025 24.7 16.4 157 15-173 94-278 (327)
360 3b7f_A Glycosyl hydrolase, BNR 50.2 90 0.0031 24.4 16.5 152 16-170 55-258 (394)
361 4a9v_A PHOX; hydrolase, beta-p 49.4 91 0.0031 26.6 8.4 58 60-117 478-548 (592)
362 1suu_A DNA gyrase subunit A; t 46.3 98 0.0033 23.7 17.0 114 16-130 100-231 (312)
363 3ott_A Two-component system se 46.0 1.5E+02 0.005 25.7 25.5 193 17-222 192-405 (758)
364 3s25_A Hypothetical 7-bladed b 39.4 1.2E+02 0.0043 23.0 17.5 189 20-227 108-302 (302)
365 3b7f_A Glycosyl hydrolase, BNR 37.4 1.5E+02 0.005 23.2 15.8 96 28-126 23-143 (394)
366 1q47_A Semaphorin 3A; beta pro 34.6 1.4E+02 0.0047 24.8 7.3 67 17-83 405-487 (495)
367 3al9_A Plexin-A2; beta-propell 32.8 95 0.0033 26.1 6.1 67 17-83 401-476 (539)
368 3uc1_A DNA gyrase subunit A; D 29.1 2E+02 0.0068 22.2 14.4 116 15-130 145-279 (327)
369 3nvq_A Semaphorin-7A; beta-pro 26.8 2.9E+02 0.01 23.5 8.1 57 28-84 381-445 (590)
370 1wp5_A Topoisomerase IV; broke 23.9 2.5E+02 0.0085 21.6 18.2 114 16-130 92-225 (323)
371 2zux_A YESW protein; beta-prop 23.1 3.5E+02 0.012 23.0 19.6 160 13-182 176-408 (591)
372 4gz8_A Semaphorin-3A; multi-do 22.6 2.4E+02 0.0082 24.5 6.9 56 28-83 430-495 (667)
373 1s28_A ORF1; type III chaperon 21.1 1.2E+02 0.004 20.0 3.6 30 13-43 27-56 (132)
374 3no0_A DNA gyrase subunit A; D 20.6 2.7E+02 0.0092 20.8 18.4 155 15-173 67-245 (276)
375 1olz_A Semaphorin 4D; developm 20.2 4.2E+02 0.014 22.9 8.7 56 28-83 416-477 (663)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.1e-46 Score=296.09 Aligned_cols=225 Identities=60% Similarity=1.115 Sum_probs=209.4
Q ss_pred cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653 4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i 83 (229)
++++.++|.+|+++|.+++|+|++++|++|+.||.|++||+++++.+..+..+..++.++.|+|++++|++|+.|+.|++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
||+++++.+..+.+|.+.|.+++|+|+++++++++.|++|++||++........+.+|...|.++.|+|.++.+|++|+.
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999987767778889999999999999977889999999
Q ss_pred CCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 164 DRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|++|++||++...+...+. +|...+..++|.+.+++.+|++|+.|++|++||+++++++.++++|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h 227 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence 9999999998887777665 4567899999987777789999999999999999999999999876
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5e-42 Score=282.55 Aligned_cols=219 Identities=25% Similarity=0.485 Sum_probs=203.0
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
...+.+|..+|.+++|+|+++.+++|+.||.|++||+.+++....+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167 (229)
Q Consensus 88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 167 (229)
+++.+..+.+|...|.+++|+|++.++++++.|++|++||++.+ .+...+.+|...+..+.++| ++.++++|+.|+.|
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTV 258 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999876 45667889999999999998 68999999999999
Q ss_pred EEEeCCCCCceEEEecCCCceEEEEEEeCC------------------CcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGG------------------DKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~------------------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
++||+.+......+.+|...+.+++|.+.. .+.+|++|+.|+.|++||+++++++.++.+|
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 999999999888999999999999996532 1458999999999999999999999988765
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-41 Score=268.81 Aligned_cols=219 Identities=26% Similarity=0.434 Sum_probs=196.4
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.+.+.+|..+|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus 48 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~ 127 (304)
T 2ynn_A 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (304)
T ss_dssp EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG
T ss_pred eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc-eEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-CCCEEEEEECC
Q psy4653 88 TLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLD 164 (229)
Q Consensus 88 ~~~-~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d 164 (229)
++. ....+.+|...|.+++|+| ++..+++++.|++|++||+...........+|...+..+.+.|. ++.+|++|+.|
T Consensus 128 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 764 4567889999999999999 56899999999999999997765545555566677888888763 56799999999
Q ss_pred CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 165 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
++|++||+++++++..+.+|...|.+++|. +++++|++|+.||+|++||.+++++++++..+
T Consensus 208 ~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CeEEEEeCCCCccceeeCCCCCCEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999999999999999999995 45669999999999999999999999998765
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-41 Score=268.51 Aligned_cols=218 Identities=23% Similarity=0.422 Sum_probs=202.2
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
....+.+|...|.+++|+|+++.+++++.|+.|++||+.+++.+..+..+...+.++.|+|++++|++|+.|+.|++||+
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 44568899999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
++++....+..|...|.+++|+|+++++++++.|+.|++||++.+ .....+.+|..+|..+.|+| ++.+|++|+.|+.
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~ 229 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGY 229 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECT-TSCEEEEECTTSC
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCe
Confidence 999988888899999999999999999999999999999999876 45666788999999999998 6889999999999
Q ss_pred EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|++||++.......+.+|...|.+++|. +++.+|++|+.|++|++||+++++++.++..|
T Consensus 230 i~iwd~~~~~~~~~~~~h~~~v~~~~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h 289 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLSGHASWVLNVAFC--PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289 (321)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEECCCcceeEEEcCCCCceEEEEEC--CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence 9999999999889999999999999995 45678999999999999999999999998765
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-40 Score=265.54 Aligned_cols=222 Identities=21% Similarity=0.364 Sum_probs=198.2
Q ss_pred ccchhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCC-----CeEEEEEecCcCeEEEEEcCCCCEEEEEe
Q psy4653 3 LRLDIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETN-----QNVKSFEVCDLPVRAAKFVPRKNWIVTGS 76 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 76 (229)
+.+.+..++.||+.+|.+++|+|++ .+|++|+.|++|++||+.+. ..+..+..|...|.++.|+|++++|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3467778899999999999999975 78999999999999998643 34667888999999999999999999999
Q ss_pred CCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC---
Q psy4653 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK--- 153 (229)
Q Consensus 77 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~--- 153 (229)
.|+.|++||+++++.+..+.+|...|.+++|+|++.++++++.|++|++||++. .....+.+|...+..+.+.|.
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC---
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCC
Confidence 999999999999999999999999999999999999999999999999999964 345667789999999999874
Q ss_pred --CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 154 --DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 154 --~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
++..+++++.|+.|++||+++......+.+|...|.+++|. +++.+|++|+.||.|++||+++++++.++..+
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 34589999999999999999888888899999999999995 46679999999999999999999998887643
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-41 Score=276.55 Aligned_cols=220 Identities=24% Similarity=0.468 Sum_probs=203.0
Q ss_pred hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
+..+.+.+|++.|.+++|+|+++.|++|+.|++|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC-----------
Q psy4653 86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD----------- 154 (229)
Q Consensus 86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----------- 154 (229)
++++..+..+.+|...|.++.++|++.++++++.|++|++||+... .+...+.+|...|.++.|+|..
T Consensus 221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 9999999999999999999999999999999999999999999776 4456678899999999999842
Q ss_pred --------CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 155 --------NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 155 --------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+.+|++|+.|+.|++||++++.++..+.+|...|.+++|. +++.+|++|+.|+.|++||+++++++.++.
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~--~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 5689999999999999999999999999999999999995 456689999999999999999999998887
Q ss_pred cC
Q psy4653 227 SG 228 (229)
Q Consensus 227 ~~ 228 (229)
+|
T Consensus 378 ~h 379 (410)
T 1vyh_C 378 AH 379 (410)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 7
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.2e-40 Score=259.40 Aligned_cols=222 Identities=20% Similarity=0.438 Sum_probs=201.0
Q ss_pred ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~ 82 (229)
+...+...+.+|+.+|.+++|+|++++|++++.||.|++||..+++....+..|...|.++.|+|++++|++|+.|+.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 34556677899999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
+||+++++.+..+.+|...|.+++|+|++.++++++.|+.|++||++.. .....+..|..++..+.|+| ++.+|++++
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 168 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSS 168 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcC-CCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999876 44566778999999999998 688999999
Q ss_pred CCCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 163 LDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 163 ~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
.|+.|++||+++++.+..+. .+...+.+++|. +++.+|++++.|+.|++||+++++++..+..+
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS--PNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred CCCcEEEEECCCCceeeEEeccCCCceEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 99999999999888777664 455678888884 46679999999999999999999999888754
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-39 Score=262.15 Aligned_cols=217 Identities=22% Similarity=0.445 Sum_probs=196.4
Q ss_pred chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
+...+.+.+|..+|.+++|+|++++|++|+.||.|++||..+++.+..+..+...+.++.|+|++++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567799999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ECCCcc----eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653 85 NYNTLE----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 85 d~~~~~----~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 160 (229)
++.+.+ ....+.+|.+.|.++.|++++. +++++.|++|++||++.. .....+.+|...|..+.|+| ++.++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAP-DTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-cEEEEEcCCCCceEEEEECC-CCCEEEE
Confidence 997653 4566789999999999998765 889999999999999876 44566789999999999998 6789999
Q ss_pred EECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 161 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
|+.|+.|++||++++.+...+.+|...|.+++|.+ ++.+|++|+.|++|++||+++++.+.++.
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 99999999999999999999999999999999954 56799999999999999999998877664
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.2e-40 Score=264.79 Aligned_cols=213 Identities=19% Similarity=0.247 Sum_probs=181.5
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE----EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF----EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 88 (229)
.|...|.+++|+|++ .+++|+.||.|++||+++++.+..+ ..|...|.++.|+|++++|++|+.|+.|++||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 356789999999986 6889999999999999998765443 35788999999999999999999999999999999
Q ss_pred cceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeee-eecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 89 LERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQV-FEGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 89 ~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
++.+..+.+|.+.|.+++|+|++. ++++++.|++|++||++........ ...+...+..+.|+|.++.+|++|+.|+.
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999999999999999999885 7889999999999999876443332 23455668899999987889999999999
Q ss_pred EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|++||+++++++..+.+|...|.+++|.+.+ ..+|++|+.|++|+|||+++++++. +.+|
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g-~~~lasgs~D~~i~vwd~~~~~~~~-~~~H 298 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS-VPFLASLSEDCSLAVLDSSLSELFR-SQAH 298 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSS-SCCEEEEETTSCEEEECTTCCEEEE-ECCC
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCcEEE-EcCC
Confidence 9999999999999999999999999996432 3589999999999999999998764 4444
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-39 Score=261.28 Aligned_cols=219 Identities=26% Similarity=0.407 Sum_probs=196.3
Q ss_pred chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
+...+.+.+|..+|.+++|+|+++.|++|+.||.|++||..+++....+..+...+.++.|+|+++.|++|+.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 34566789999999999999999999999999999999999999888888888899999999999999999999999999
Q ss_pred ECCCc------ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-CCCE
Q psy4653 85 NYNTL------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-DNNT 157 (229)
Q Consensus 85 d~~~~------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~ 157 (229)
++... .....+..|...|.++.|+|++..+++++.|++|++||++.+ .+...+.+|...|..+.++|. ++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 98543 234567789999999999999999999999999999999876 456678899999999999874 4579
Q ss_pred EEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 158 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
|++|+.|++|++||+++++++..+.+|...|.+++|.+ ++.+|++|+.|++|++||+++++.+..+.
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP--SGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 99999999999999999999999999999999999954 55689999999999999999988776654
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=258.87 Aligned_cols=205 Identities=24% Similarity=0.446 Sum_probs=190.5
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.+.+.+|...+.+++|+|+++.|++|+.||.|++||+++++....+..+...+.++.|+|++++|++|+.|+.|++||++
T Consensus 115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~ 194 (321)
T 3ow8_A 115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194 (321)
T ss_dssp EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 34567788899999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167 (229)
Q Consensus 88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 167 (229)
+++.+..+++|...|.+++|+|++++|++++.|+.|++||++.. .....+.+|...|..++|+| ++.+|++|+.|++|
T Consensus 195 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSV 272 (321)
T ss_dssp TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999866 44567789999999999998 68899999999999
Q ss_pred EEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653 168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216 (229)
Q Consensus 168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~ 216 (229)
++||+++++++.++.+|...|.+++|. +++.+|++++.|+.|++||.
T Consensus 273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s--~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQDQVWGVKYN--GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCCEEEEEEcCCCCcEEEEEEC--CCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999994 46678999999999999996
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.4e-40 Score=269.05 Aligned_cols=221 Identities=27% Similarity=0.448 Sum_probs=194.7
Q ss_pred cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653 4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i 83 (229)
.+...+.+.||+.+|.+++|+|++++|++|+.||+|++||+.+++....+..|...|.++.|+|++++|++|+.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcc-------eEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeee-----ecceeeEEEEEE
Q psy4653 84 FNYNTLE-------RFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVF-----EGHTHYVMQIVI 150 (229)
Q Consensus 84 wd~~~~~-------~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~-----~~~~~~v~~~~~ 150 (229)
||+.+.. ....+.+|.+.|.++.|+|++ ..+++++.|++|++||+..+... ..+ .+|...|..+.+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~-~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE-EEECCCSSSSCCSCEEEEEE
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE-EEeecccCCCCccCeEEEEe
Confidence 9986432 345678899999999999975 47999999999999999876443 333 578889999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCC-CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 151 NPKDNNTFASASLDRTVKVWQLG-SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
++.++.+|++|+.|++|++||++ ...++..+.+|...|.+++|. +++.+|+||+.|++|++||+++++++.++..
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~--p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF--PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC--TTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe--cCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 88788999999999999999997 456788899999999999995 4667899999999999999999999887754
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=261.46 Aligned_cols=208 Identities=15% Similarity=0.162 Sum_probs=179.9
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~ 88 (229)
.+.+|++.|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.++.|+|++. +|++|+.|+.|++||+++
T Consensus 122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC 201 (344)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence 4568999999999999999999999999999999999999999999999999999999874 789999999999999999
Q ss_pred cceEEEec--cCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653 89 LERFHSFE--AHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR 165 (229)
Q Consensus 89 ~~~~~~~~--~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 165 (229)
++....+. .|...+.+++|+|+ +.++++|+.|++|++||++.. .+...+.+|...|.+++|+|....+|+||+.|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 202 PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence 88877764 34567899999985 457889999999999999876 456678899999999999995557899999999
Q ss_pred cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
+|++||+.+++ +..+.+|...|.+++|++.+ ..+|+||+.|++|++|++.++.
T Consensus 281 ~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~-~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 281 SLAVLDSSLSE-LFRSQAHRDFVRDATWSPLN-HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEECTTCCE-EEEECCCSSCEEEEEECSSS-TTEEEEEETTSCEEEEECCC--
T ss_pred eEEEEECCCCc-EEEEcCCCCCEEEEEEeCCC-CeEEEEEcCCCeEEEEECCCCC
Confidence 99999998775 45678999999999996533 3478899999999999998754
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-39 Score=258.93 Aligned_cols=212 Identities=21% Similarity=0.392 Sum_probs=178.4
Q ss_pred chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEE-Ee-cCcCeEEEEEcCCCCEEEEEeCCCe
Q psy4653 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSF-EV-CDLPVRAAKFVPRKNWIVTGSDDMQ 80 (229)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~l~sg~~d~~ 80 (229)
++..+.+.+|+.+|.+++|+|+ .|++|+.|+.|++||+.++. .+..+ .. |..+|.++.|+|++++|++|+.|+.
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4566779999999999999998 89999999999999998753 34444 23 7778999999999999999999999
Q ss_pred EEEEECCC-------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc---eeeeeeeecceeeEEEEEE
Q psy4653 81 VCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA---WACQQVFEGHTHYVMQIVI 150 (229)
Q Consensus 81 i~iwd~~~-------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~---~~~~~~~~~~~~~v~~~~~ 150 (229)
|++||++. .+.+..+.+|.+.|.+++|+|++++|++++.|++|++||+... ..+...+.+|...|..+.|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 99999843 3456778899999999999999999999999999999999532 2345667889999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCC--CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 151 NPKDNNTFASASLDRTVKVWQLGSA--SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
+| ++.+|++|+.|++|++||...+ +++..+.+|...|.+++|.+...+.+|++|+.|++|++||++++
T Consensus 162 ~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 162 HP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 99 6889999999999999998765 56778899999999999976544568999999999999998754
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=261.06 Aligned_cols=214 Identities=28% Similarity=0.402 Sum_probs=185.6
Q ss_pred CCccchhhhhcccCCC-ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE---EecCcCeEEEEEcCCCCEEEEEe
Q psy4653 1 MPLRLDIKRKLTARSD-RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF---EVCDLPVRAAKFVPRKNWIVTGS 76 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~ 76 (229)
|-..++..+.+.+|.. +|.+++|+|++++|++|+.|+.|++||+.++...... ..|...|.++.|+|++++|++|+
T Consensus 1 ~~~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp ---CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence 4455677888999998 9999999999999999999999999999987643322 45778899999999999999999
Q ss_pred CCCeEEEEECCCc--ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEEEEcC
Q psy4653 77 DDMQVCVFNYNTL--ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQIVINP 152 (229)
Q Consensus 77 ~d~~i~iwd~~~~--~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~ 152 (229)
.|+.+++||.+.. +.+..+.+|...|.+++|+|++++|++++.|++|++||++... .+...+.+|...|..+.|+|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 9999999998765 4567889999999999999999999999999999999997643 34566788999999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653 153 KDNNTFASASLDRTVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217 (229)
Q Consensus 153 ~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~ 217 (229)
++.+|++|+.|+.|++||.+... +...+.+|...|.+++|. +++.+|++|+.|++|+|||..
T Consensus 161 -~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s--p~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 161 -SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD--PSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp -SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEEE
T ss_pred -CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC--CCCCEEEEEeCCCeEEEeccc
Confidence 67899999999999999997764 456788999999999995 466799999999999999963
No 16
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.8e-39 Score=253.06 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=182.0
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC--CCeEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEEEEE
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET--NQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd 85 (229)
.+.+|.+.|.+++|+|+++.|++|+.|+.|++||+.+ .+.+..+..|..+|.++.|+|+ +++|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 3678999999999999999999999999999999975 3667888899999999999874 88999999999999999
Q ss_pred CCCcc--eEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCCC------
Q psy4653 86 YNTLE--RFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPKD------ 154 (229)
Q Consensus 86 ~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~------ 154 (229)
+++++ .+..+..|...|.+++|+|+ +.++++++.|++|++||++.... ....+.+|...|..+.|+|..
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 98764 55667889999999999997 78999999999999999976532 245677899999999999842
Q ss_pred ------CCEEEEEECCCcEEEEeCCCCC----ceEEEecCCCceEEEEEEeCC-CcCEEEEeeCCCeEEEEECCCC
Q psy4653 155 ------NNTFASASLDRTVKVWQLGSAS----PNFTLEGHEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 155 ------~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
+.+|++|+.|++|++||+++.. ....+.+|...|.+++|.+.+ .+.+|++|+.|++|+|||++++
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 4699999999999999998765 456788999999999996543 1368999999999999999764
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-38 Score=250.62 Aligned_cols=220 Identities=22% Similarity=0.402 Sum_probs=196.7
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
..+.+.+|..+|.+++|+|+++.|++++.|+.|++||+++++.+..+..+...+.++.|+|++++|++|+.|+.|++||+
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
++++.+..+..|...|.+++|+|++.++++++.|+.|++||++...........+..++..+.|+| ++.++++++.|+.
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~ 215 (312)
T 4ery_A 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNT 215 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTE
T ss_pred CCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence 999999999999999999999999999999999999999999877555555556677899999998 6889999999999
Q ss_pred EEEEeCCCCCceEEEecCCCceEEE--EEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 167 VKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|++||+++++.+..+.+|.....++ .+. ..++.+|++|+.||.|++||+++++++.+++.|
T Consensus 216 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFS-VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EEEEETTTTEEEEEECSSCCSSSCCCEEEE-CSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EEEEECCCCcEEEEEEecCCceEEEEEEEE-eCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 9999999998888888887654332 333 335668999999999999999999999998866
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-38 Score=254.69 Aligned_cols=214 Identities=22% Similarity=0.339 Sum_probs=184.2
Q ss_pred CccchhhhhcccCCCceEEEEE-----cc-CCCeEEEEEecCeEEEEEcCCC-------CeEEEEEecCcCeEEEEEcCC
Q psy4653 2 PLRLDIKRKLTARSDRVKCCDL-----HP-TEPWMLASLYNGHVHVWNHETN-------QNVKSFEVCDLPVRAAKFVPR 68 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~~~~-----~p-~~~~l~~~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~ 68 (229)
+++++....+.||++.|.+++| +| ++++|++|+.|++|++||+.+. .....+..|...|.++.|+|+
T Consensus 8 ~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred ceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 3456677789999999999999 77 8999999999999999999754 345567788889999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee-eeeecceeeEEE
Q psy4653 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ-QVFEGHTHYVMQ 147 (229)
Q Consensus 69 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~-~~~~~~~~~v~~ 147 (229)
+++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++.++++++.|++|++||+....... ....+|...+.+
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 9999999999999999999999999999999999999999999999999999999999997432111 112368888999
Q ss_pred EEEcCCC---------CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 148 IVINPKD---------NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 148 ~~~~~~~---------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
+.|+|.. +.+|++++.|+.|++||. .......+.+|...|.+++|. +++.+|++|+.|+.|++||+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s--~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS--PNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTCEEEEEESSC
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC--CCCCEEEEEcCCCeEEEEECCC
Confidence 9999843 268999999999999994 455667788999999999994 4667999999999999999943
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-37 Score=248.95 Aligned_cols=226 Identities=21% Similarity=0.318 Sum_probs=199.8
Q ss_pred CCccchhhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCC-----eEEEEEecCcCeEEEEEcCCCCEEEE
Q psy4653 1 MPLRLDIKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQ-----NVKSFEVCDLPVRAAKFVPRKNWIVT 74 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s 74 (229)
|+++++++.+|.||++.|++++|+|+ +++|++|+.|++|++||+.+.+ +...+..|...|.++.|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 46778889999999999999999998 5789999999999999998754 34566778889999999999999999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653 75 GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154 (229)
Q Consensus 75 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (229)
|+.|+.|++|+............+...+..+.+++++.++++++.|+.+++||+...........+|...+..+.+++..
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 99999999999998888888888888999999999999999999999999999987766666677888999999998643
Q ss_pred -CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 155 -NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 155 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
..++++++.|+.|++||+++.+....+.+|...|.+++|. +++.+|++|+.|+.|++||+++++++..+..+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC--CCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 4578899999999999999999999999999999999994 46679999999999999999999998887654
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-38 Score=253.00 Aligned_cols=205 Identities=19% Similarity=0.335 Sum_probs=184.7
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
..+.+.+|...|.++.|+|++. +++++.|+.|++||+++++.+..+..|...|.++.|+|++++|++|+.|+.|++||+
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 4456789999999999999876 889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee-eecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV-FEGHTHYVMQIVINPKDNNTFASASLDR 165 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 165 (229)
++++....+.+|...|.+++|+|++.++++++.|++|++||++........ ...+...|..+.|+| ++.+|++|+.|+
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~ 292 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF 292 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999876433222 122345789999998 689999999999
Q ss_pred cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653 166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215 (229)
Q Consensus 166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd 215 (229)
.|++||+.+...+..+.+|...|.+++|. +++.+|+||+.|+.|+|||
T Consensus 293 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~s--~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDALKADRAGVLAGHDNRVSCLGVT--DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcccCcEeeEeecCCCcEEEEEEc--CCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999995 4667899999999999997
No 21
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.7e-38 Score=249.22 Aligned_cols=219 Identities=15% Similarity=0.216 Sum_probs=185.1
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC----eEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeE
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ----NVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQV 81 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i 81 (229)
++.+.+|+++|.+++|+|++++|++|+.||.|++||+.++. ....+..|..+|.++.|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 44578999999999999999999999999999999999763 5566677888999999999 58999999999999
Q ss_pred EEEECCCc---------ceEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-----------------
Q psy4653 82 CVFNYNTL---------ERFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA----------------- 133 (229)
Q Consensus 82 ~iwd~~~~---------~~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~----------------- 133 (229)
++||++++ +.+..+..|...|.+++|+|+ +.++++++.|+.|++||++....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999876 457778899999999999999 99999999999999999864321
Q ss_pred ------------------------------------------eeeeeecceeeEEEEEEcCCCC---CEEEEEECCCcEE
Q psy4653 134 ------------------------------------------CQQVFEGHTHYVMQIVINPKDN---NTFASASLDRTVK 168 (229)
Q Consensus 134 ------------------------------------------~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~ 168 (229)
....+.+|...|.++.|+|..+ .+|++|+.|+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 1233456888999999998432 7999999999999
Q ss_pred EEeCCCC----------------------------------------------CceEEEecCCCceEEEEEEeCCCcCEE
Q psy4653 169 VWQLGSA----------------------------------------------SPNFTLEGHEKGVNCVDYYHGGDKPYL 202 (229)
Q Consensus 169 ~wd~~~~----------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l 202 (229)
+||++.. .++..+.+|...|.+++|.+ ++.+|
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l 321 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL--TGTIL 321 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS--SSCCE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC--CCCEE
Confidence 9998764 45566788999999999954 55689
Q ss_pred EEeeCCCeEEEEECCCC---eEEEeeccC
Q psy4653 203 ISGADDRLVKIWDYQNK---TCVQTLESG 228 (229)
Q Consensus 203 ~s~s~d~~i~iwd~~~~---~~~~~~~~~ 228 (229)
++|+.||.|++||++++ ++++.+..+
T Consensus 322 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 322 SSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEecCCCcEEEEecCcCcchhheeehccc
Confidence 99999999999999876 566666654
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-37 Score=250.34 Aligned_cols=205 Identities=20% Similarity=0.329 Sum_probs=184.6
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iw 84 (229)
..+.+.+|+..|.+++|+|++..+++++.|++|++||+++++.+..+..|...+.++.|+| ++++|++|+.||.|++|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 4455778999999999999999999999999999999999999999999999999999988 46899999999999999
Q ss_pred ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec--ceeeEEEEEEcCCCCCEEEEEE
Q psy4653 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG--HTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
|+++++.+..+.+|...|++++|+|++.++++++.|++|++||++.... ...+.. +...+..+.|+| ++.++++|+
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~ 303 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVDFSL-SGRLLFAGY 303 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccceeEEEEeC-CCCEEEEEE
Confidence 9999999999999999999999999999999999999999999987633 233322 334688999998 689999999
Q ss_pred CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653 163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215 (229)
Q Consensus 163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd 215 (229)
.|+.|++||+.++.++..+.+|...|.+++|. +++.+|++|+.|++|++|+
T Consensus 304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s--pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVS--PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEEC--TTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCCceEEEEECCCCcEEEEEEC--CCCCEEEEEcCCCCEEecC
Confidence 99999999999999899999999999999995 4667899999999999996
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.4e-38 Score=254.70 Aligned_cols=216 Identities=20% Similarity=0.283 Sum_probs=180.8
Q ss_pred hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE----EEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS----FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
....+|...|.+++|+|++. +++++.||+|++||+.+++.... ...|...|.++.|+|++++|++|+.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 33557999999999999986 56778899999999998765432 23567889999999999999999999999999
Q ss_pred ECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeee-eeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 85 NYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQ-VFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
|+++++.+..+++|...|++++|+|++. ++++++.|++|++||++....... .+..|...+.++.|+|..+.+|++|+
T Consensus 167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence 9999999999999999999999999875 789999999999999987644332 23456777999999997778999999
Q ss_pred CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
.|+.|++||+++++++..+.+|...|.+++|.+. ...+|++|+.|++|+|||+++++++..+.
T Consensus 247 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~lasgs~D~~i~iwd~~~~~~~~~~~ 309 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH-SSPFLASISEDCTVAVLDADFSEVFRDLS 309 (357)
T ss_dssp SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS-SSCCEEEEETTSCEEEECTTSCEEEEECC
T ss_pred cccceeEEECCCCcEeEEEeccceeEEEEEEcCC-CCCEEEEEeCCCEEEEEECCCCcEeEECC
Confidence 9999999999999999999999999999999643 23589999999999999999999887763
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.6e-37 Score=266.30 Aligned_cols=216 Identities=19% Similarity=0.313 Sum_probs=188.8
Q ss_pred hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCC----C
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDD----M 79 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~ 79 (229)
+..+.|.+|++.|.+++|+|++++|++|+.||.|+|||+.+++ ....+..|..+|.++.|+|+++.|++++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 3455688999999999999999999999999999999997654 345677788899999999999999998875 3
Q ss_pred eEEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653 80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158 (229)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (229)
.|++|| +++....+.+|.+.|++++|+|+++ .+++++.|++|++||.... .+...+.+|...|.++.|+| ++.+|
T Consensus 130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fsp-dg~~l 205 (611)
T 1nr0_A 130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-DGSLF 205 (611)
T ss_dssp EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred EEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECC-CCCEE
Confidence 677777 4556677889999999999999987 5999999999999998765 45667889999999999999 68999
Q ss_pred EEEECCCcEEEEeCCCCCceEEEe-------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 159 ASASLDRTVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 159 ~s~~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
++|+.|++|++||+.+++++..+. +|...|.+++|. +++.+|+||+.|++|++||+++++++.++..
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 999999999999999888877774 799999999995 4667999999999999999999999887753
No 25
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-38 Score=253.40 Aligned_cols=212 Identities=19% Similarity=0.228 Sum_probs=175.0
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEE
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVC 82 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~ 82 (229)
++..+.+|+++|.+++|+|++++|++|+.|++|++||+++++ .+..+..|..+|.++.|+|+ +++|++|+.|+.|+
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp ---------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 345577999999999999999999999999999999998875 45678889999999999864 88999999999999
Q ss_pred EEECCCc--ceEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEEEEcCCC--
Q psy4653 83 VFNYNTL--ERFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQIVINPKD-- 154 (229)
Q Consensus 83 iwd~~~~--~~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-- 154 (229)
+||++++ +.+..+.+|...|.+++|+|+ +.++++++.|++|++||++... .....+.+|...+..+.|+|..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999876 356778899999999999998 7799999999999999997642 2345567888889999998842
Q ss_pred --------------CCEEEEEECCCcEEEEeCCCC---CceEEEecCCCceEEEEEEeCC--CcCEEEEeeCCCeEEEEE
Q psy4653 155 --------------NNTFASASLDRTVKVWQLGSA---SPNFTLEGHEKGVNCVDYYHGG--DKPYLISGADDRLVKIWD 215 (229)
Q Consensus 155 --------------~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~d~~i~iwd 215 (229)
+.+|++|+.|++|++||++.. .++..+.+|...|.+++|.+.+ +..+|++|+.|++|+|||
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 368999999999999999754 3556778999999999997643 236899999999999999
Q ss_pred CCC
Q psy4653 216 YQN 218 (229)
Q Consensus 216 ~~~ 218 (229)
+++
T Consensus 245 ~~~ 247 (316)
T 3bg1_A 245 CDD 247 (316)
T ss_dssp CSS
T ss_pred ccC
Confidence 876
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-37 Score=251.38 Aligned_cols=206 Identities=16% Similarity=0.126 Sum_probs=179.9
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL 89 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~ 89 (229)
..+|+..|.+++|+|+++.|++|+.|+.|++||+++++.+..+..|...|.++.|+|+++ ++++++.|+.|++||++++
T Consensus 135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~ 214 (357)
T 4g56_B 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214 (357)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS
T ss_pred cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC
Confidence 458999999999999999999999999999999999999999999999999999999875 7899999999999999988
Q ss_pred ceEEEe--ccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 90 ERFHSF--EAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 90 ~~~~~~--~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
+.+..+ ..|...+.+++|+|++ .++++|+.|+.|++||++.. .....+.+|...|..++|+|..+.+|++|+.|++
T Consensus 215 ~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 766544 3466789999999975 57889999999999999876 4456678899999999999966678999999999
Q ss_pred EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
|++||+++++.+. ..+|...|.+++|+|. ++.+|+||+.||+|++||+.+.
T Consensus 294 i~iwd~~~~~~~~-~~~H~~~V~~vafsP~-d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 294 VAVLDADFSEVFR-DLSHRDFVTGVAWSPL-DHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEECTTSCEEEE-ECCCSSCEEEEEECSS-STTEEEEEETTSCEEEEECC--
T ss_pred EEEEECCCCcEeE-ECCCCCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCC
Confidence 9999998876554 4589999999999642 4568999999999999999654
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-37 Score=251.49 Aligned_cols=211 Identities=24% Similarity=0.402 Sum_probs=184.8
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd 85 (229)
....+.+|...|.+++|+|+++.|++++.|+.|++||+++++....+. +...+.++.|+| ++++|++|+.|+.|++||
T Consensus 157 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd 235 (393)
T 1erj_A 157 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235 (393)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 345678999999999999999999999999999999999998877765 456799999999 899999999999999999
Q ss_pred CCCcceEEEe-------ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-----------eeeeeeecceeeEEE
Q psy4653 86 YNTLERFHSF-------EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-----------ACQQVFEGHTHYVMQ 147 (229)
Q Consensus 86 ~~~~~~~~~~-------~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-----------~~~~~~~~~~~~v~~ 147 (229)
+++++.+..+ .+|...|.+++|+|++.++++++.|+.|++||++... .+...+.+|...|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 315 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence 9988776665 5788999999999999999999999999999986532 234566789999999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeC----CCcCEEEEeeCCCeEEEEECCCC
Q psy4653 148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG----GDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
+.++| ++.+|++|+.|+.|++||..+++++..+.+|...|.+++|.+. +++++|+||+.||+|+||++++.
T Consensus 316 ~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 316 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99998 6789999999999999999999999999999999999998642 24678999999999999998754
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.3e-37 Score=266.88 Aligned_cols=221 Identities=24% Similarity=0.322 Sum_probs=193.0
Q ss_pred hhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCC-----CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETN-----QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~ 79 (229)
.....+.+|++.|.+++|+|++ .+|++|+.|++|++||+.+. .....+..|...|.++.|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4445688999999999999975 68889999999999999764 33566788999999999999999999999999
Q ss_pred eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee--eeeecceeeEEEEEEcCCC-CC
Q psy4653 80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ--QVFEGHTHYVMQIVINPKD-NN 156 (229)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~ 156 (229)
.|++||+.+++.+..+.+|...|.+++|+|++.++++++.|++|++||+....... ....+|...|.++.|+|.. ..
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999999999986542211 1224688889999999843 25
Q ss_pred EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
.+++|+.|++|++||+++.+....+.+|...|.+++|+ +++.+|++|+.||.|++||+++++++..+..+
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s--pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~ 602 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS--PDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSBCEEEETTTTEEEECCBCS
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCceEEEecCC
Confidence 89999999999999999998888999999999999995 46679999999999999999999988877543
No 29
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-36 Score=247.80 Aligned_cols=209 Identities=24% Similarity=0.417 Sum_probs=182.7
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
..|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||+++++....+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred ccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeee------eecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653 96 EAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQV------FEGHTHYVMQIVINPKDNNTFASASLDRTVK 168 (229)
Q Consensus 96 ~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 168 (229)
. +...+.+++|+| ++.++++++.|+.|++||++........ ..+|...|.++.|+| ++.+|++|+.|+.|+
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVK 281 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEE
Confidence 5 567899999999 8899999999999999999876433222 257888999999998 688999999999999
Q ss_pred EEeCCCC------------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 169 VWQLGSA------------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 169 ~wd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+||++.. .....+.+|...|.+++|.+ ++.+|++|+.|+.|++||.++++++.++++|
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECG--GGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 9998753 23456788999999999854 5568999999999999999999999988876
No 30
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-37 Score=272.49 Aligned_cols=225 Identities=59% Similarity=1.099 Sum_probs=208.4
Q ss_pred cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653 4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i 83 (229)
++++.+++.+|+.+|.+++|||++++|++++.||.|++||+.+++.+..+..+..+|.++.|+|++++|++|+.||.|++
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
||+++++.+..+.+|.+.|.+++|+|+++++++++.|+.|++||++........+.+|..++.++.|+|.++..+++++.
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999988767777888999999999999866789999999
Q ss_pred CCcEEEEeCCCCCceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|+.|++||+..+.+...+..+. ..+.+++|.+.+++.+|++|+.||.|++||+++++++.++..|
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 9999999999888888877655 7899999977557779999999999999999999999888754
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=247.11 Aligned_cols=213 Identities=25% Similarity=0.450 Sum_probs=175.2
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 88 (229)
..+|...|.+++|+|++++|++|+.|+.|++||..++. .+..+..|..+|.++.|+|++++|++|+.|+.|++||++.
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 36899999999999999999999999999999998874 4667778889999999999999999999999999999976
Q ss_pred cc---eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653 89 LE---RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFASASLD 164 (229)
Q Consensus 89 ~~---~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 164 (229)
.. .+..+.+|...|.+++|+|++.++++++.|+.|++||++... .+...+.+|...|..+.|+| ++.+|++|+.|
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D 215 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDD 215 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCC
Confidence 53 456778899999999999999999999999999999987653 34567789999999999998 68899999999
Q ss_pred CcEEEEeCCCC--------------------------------------------------------------CceE---
Q psy4653 165 RTVKVWQLGSA--------------------------------------------------------------SPNF--- 179 (229)
Q Consensus 165 ~~i~~wd~~~~--------------------------------------------------------------~~~~--- 179 (229)
++|++||.... .+.+
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 99999985210 0000
Q ss_pred --EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 180 --TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 180 --~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
...+|...|.+++|.+.+ ..+|+||+.||+|++|++++++.....
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~-~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKE-PGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEETTSSSSCEEEEEECSSS-TTEEEEEETTSCEEEEEECC-------
T ss_pred eeecccccCcEeEeEEeCCC-ceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 113678889999996432 248999999999999999988765544
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-37 Score=244.34 Aligned_cols=205 Identities=21% Similarity=0.357 Sum_probs=170.7
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-------CCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-------NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
+|..+|.+++|+|++++|++|+.|+.|++||.+. .+.+..+..|..+|.++.|+|++++|++|+.|+.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999853 345667778888999999999999999999999999999
Q ss_pred CCC----cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCC-CCEEE
Q psy4653 86 YNT----LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKD-NNTFA 159 (229)
Q Consensus 86 ~~~----~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~ 159 (229)
++. .+.+..+.+|...|.+++|+|++.+|++++.|++|++||+... ..+...+.+|...|..+.|+|.. +.+|+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 943 2456778899999999999999999999999999999998654 24567788999999999999842 56899
Q ss_pred EEECCCcEEEEeCCCC--------CceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 160 SASLDRTVKVWQLGSA--------SPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 160 s~~~d~~i~~wd~~~~--------~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
+|+.|++|++||+... .....+.+ |...|.+++|. ++ .+|++++.||.|++||..+++
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~-~~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG--FN-GLIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC--TT-SCEEEEETTSCEEEEEEETTE
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc--CC-CEEEEEeCCCEEEEEEcCCCc
Confidence 9999999999998654 22333444 88899999995 23 379999999999999998773
No 33
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.4e-36 Score=239.91 Aligned_cols=212 Identities=20% Similarity=0.405 Sum_probs=187.4
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.+.+.+|+..|.+++|+|++++|++|+.|++|++||+++++.+..+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CcceEEEeccCCCceeEEEEcCCC------CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653 88 TLERFHSFEAHSDYVRCVAVHPTQ------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161 (229)
Q Consensus 88 ~~~~~~~~~~h~~~i~~v~~~~~~------~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 161 (229)
++.+..+.+|...|.++.|+|.. ..+++++.|+.|++||++.. .....+.+|...|..+.|+| ++.+|++|
T Consensus 138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp-~g~~l~s~ 214 (319)
T 3frx_A 138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASP-DGTLIASA 214 (319)
T ss_dssp -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECT-TSSEEEEE
T ss_pred -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcC-CCCEEEEE
Confidence 45677888999999999999954 48999999999999999875 45666789999999999998 68999999
Q ss_pred ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 162 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+.|++|++||+.+.+++..+..+ ..+.+++|.+ ++.+|++++. +.+++|+++.+..+..+.
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp--~~~~la~~~~-~~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATA-TGIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEECC-SCEEEEEECS--SSSEEEEEET-TEEEEEEETTEEEEEEEC
T ss_pred eCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcC--CCCEEEEEcC-CCcEEEEeCcCeeeeccC
Confidence 99999999999999888888765 5799999954 5567777765 469999999887776654
No 34
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-36 Score=238.62 Aligned_cols=210 Identities=20% Similarity=0.344 Sum_probs=175.6
Q ss_pred hhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCC
Q psy4653 6 DIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDM 79 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~ 79 (229)
+....+.+|+.+|.+++|+|+ ++.|++|+.|++|++||+++++ .+..+..|...|.++.|+|+ +++|++|+.|+
T Consensus 44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~ 123 (297)
T 2pm7_B 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG 123 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence 345678899999999999864 8899999999999999999874 45566678889999999997 88999999999
Q ss_pred eEEEEECCCcc--eEEEeccCCCceeEEEEcCC-------------CCEEEEEeCCCcEEEEecCCce---eeeeeeecc
Q psy4653 80 QVCVFNYNTLE--RFHSFEAHSDYVRCVAVHPT-------------QPFLLTSSDDMLIKLWNWEKAW---ACQQVFEGH 141 (229)
Q Consensus 80 ~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~~-------------~~~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~ 141 (229)
.|++||++... ....+.+|...|.+++|+|+ +++|++|+.|++|++||++... .....+.+|
T Consensus 124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 99999997653 23567789999999999997 4689999999999999986543 245567899
Q ss_pred eeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCCCc--e-EEE--ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653 142 THYVMQIVINPKD--NNTFASASLDRTVKVWQLGSASP--N-FTL--EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214 (229)
Q Consensus 142 ~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~--~-~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iw 214 (229)
...|..+.|+|.. +.+|+|++.|++|++||++.... . ..+ ..|...+.+++|.+ ++++|++++.|+.|+||
T Consensus 204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~las~~~D~~v~lw 281 (297)
T 2pm7_B 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLW 281 (297)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS--SSCCEEEEETTSCEEEE
T ss_pred CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC--CCCEEEEEcCCCcEEEE
Confidence 9999999999943 47999999999999999976431 1 223 45777899999954 56689999999999999
Q ss_pred ECC
Q psy4653 215 DYQ 217 (229)
Q Consensus 215 d~~ 217 (229)
+..
T Consensus 282 ~~~ 284 (297)
T 2pm7_B 282 KEN 284 (297)
T ss_dssp EEC
T ss_pred EEC
Confidence 987
No 35
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.3e-37 Score=253.38 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=179.2
Q ss_pred hhhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEE--EEEecCcCeEEEEEcC-CCCEEEEEeCCCeE
Q psy4653 6 DIKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVK--SFEVCDLPVRAAKFVP-RKNWIVTGSDDMQV 81 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i 81 (229)
.+.+...+|..+|+|++|||. +..|++|+.||.|+|||+.+++... .+..|..+|.++.|+| ++++|++|+.||.|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 344556789999999999995 5678889999999999998876544 3456788999999998 68899999999999
Q ss_pred EEEECCCcceEEEec--cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653 82 CVFNYNTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA 159 (229)
Q Consensus 82 ~iwd~~~~~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (229)
++||+++........ .+...+.+++|+|++.++++|+.|+.|++||++.. ....+.+|...|.++.|+|....+++
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEE
Confidence 999998654322222 23446789999999999999999999999998643 34567789999999999997667899
Q ss_pred EEECCCcEEEEeCCCCCceE---EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 160 SASLDRTVKVWQLGSASPNF---TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 160 s~~~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
+|+.|+.|++||+++..... ...+|...|.+++|. +++.+|++|+.||.|+|||++++++...+..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS--PDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC--TTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeEC--CCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 99999999999998765432 346788999999994 4667999999999999999999887766643
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-36 Score=247.45 Aligned_cols=211 Identities=19% Similarity=0.335 Sum_probs=181.6
Q ss_pred hhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCeEEEE-----EecCcCeEEEEEcC-CCCEEEEEeCC
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSF-----EVCDLPVRAAKFVP-RKNWIVTGSDD 78 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~sg~~d 78 (229)
...+.+.+|+..|.++.|+|++ ..|++|+.|++|++||+++++.+..+ ..|...+.++.|++ ++++|++|+.|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence 3456688999999999999975 56899999999999999999988877 45667899999987 78999999999
Q ss_pred CeEEEEECC-CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-------eeeEEEEEE
Q psy4653 79 MQVCVFNYN-TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-------THYVMQIVI 150 (229)
Q Consensus 79 ~~i~iwd~~-~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-------~~~v~~~~~ 150 (229)
+.|++||++ ..+.+..+.+|...|.+++|+|++.+|++++.|++|++||++.+.. ...+..+ ...+..++|
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEE
T ss_pred CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE-EEEecccccccccccCceEEEEE
Confidence 999999997 4567788899999999999999999999999999999999987643 3333322 234789999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCceEEE----ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 151 NPKDNNTFASASLDRTVKVWQLGSASPNFTL----EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
+| ++.++++|+.|+.|++||...++....+ .+|...|.+++|. +++.+|+||+.|++|+||++..++
T Consensus 307 s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 307 SI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC--SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC--CCCCEEEEeeCCCCEEEEecCCCc
Confidence 98 6899999999999999999888877776 6799999999995 466799999999999999998653
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-38 Score=254.14 Aligned_cols=214 Identities=15% Similarity=0.142 Sum_probs=177.0
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 88 (229)
+..+..+|.+++|+|++++|++|+.|+.|++||+.++ +.+..+..|...|.++.|+|++++|++|+.|+.|++||+++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4456789999999999999999999999999999998 67778888889999999999999999999999999999988
Q ss_pred cc---eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee--eeeeeec-ceeeEEEEEEcCCCCCEEEEEE
Q psy4653 89 LE---RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA--CQQVFEG-HTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 89 ~~---~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
++ ....+..|...|.+++|+|++.++++++.|+.|++||++.... +...+.+ |...|.++.|+| ++.+|++++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~ 165 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGC 165 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEe
Confidence 76 5677788999999999999999999999999999999987643 3455566 999999999998 688999999
Q ss_pred CCCcEEEEeCCC------------------CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE---
Q psy4653 163 LDRTVKVWQLGS------------------ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC--- 221 (229)
Q Consensus 163 ~d~~i~~wd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--- 221 (229)
.|+.|++||+.. +.++..+ +|...+.+++|. +++.+|++++.|+.|++||++++++
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS--PSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC--TTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 999999999852 2334444 888899999995 4566899999999999999998876
Q ss_pred -EEeeccC
Q psy4653 222 -VQTLESG 228 (229)
Q Consensus 222 -~~~~~~~ 228 (229)
+.++..|
T Consensus 243 ~~~~~~~~ 250 (377)
T 3dwl_C 243 ALITVKLS 250 (377)
T ss_dssp ECCCEECS
T ss_pred eeEeecCC
Confidence 6666544
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-36 Score=240.95 Aligned_cols=213 Identities=20% Similarity=0.286 Sum_probs=185.2
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC--CCCeEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEE
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE--TNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVC 82 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~ 82 (229)
..+.+.+|..+|.+++|+|++++|++|+.||.|++||+. +++.+..+..|..+|.++.|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456788999999999999999999999999999999998 55667778888899999999987 89999999999999
Q ss_pred EEECCCcc--eEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCC----
Q psy4653 83 VFNYNTLE--RFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPK---- 153 (229)
Q Consensus 83 iwd~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~---- 153 (229)
+||+++++ .+..+..|...|.+++|+|+ +.++++++.|+.|++||+..... ....+.+|...|..+.|+|.
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99998876 67778889999999999999 89999999999999999977632 34456788899999999985
Q ss_pred --------CCCEEEEEECCCcEEEEeCCCCCc----eEEEecCCCceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCC
Q psy4653 154 --------DNNTFASASLDRTVKVWQLGSASP----NFTLEGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 154 --------~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~ 219 (229)
++.++++++.|+.|++||++.... ...+.+|...+.+++|.+.+. +.+|++++.||.|++||++++
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 578999999999999999987653 356678999999999954310 568999999999999999886
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-35 Score=236.68 Aligned_cols=207 Identities=20% Similarity=0.373 Sum_probs=174.7
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.+.+.+|...|.+++|+|++.++++|+.|+.|++||+++++.+..+..|..+|.++.|+|++++|++|+.|+.|++||+.
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcceEEEe---ccCCCceeEEEEcCCC----------CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653 88 TLERFHSF---EAHSDYVRCVAVHPTQ----------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154 (229)
Q Consensus 88 ~~~~~~~~---~~h~~~i~~v~~~~~~----------~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (229)
.. ..... ..|...|.+++|+|++ +++++++.|+.|++||.. ......+.+|...|.++.|+| +
T Consensus 149 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~-~ 224 (343)
T 2xzm_R 149 GE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISP-N 224 (343)
T ss_dssp SC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECT-T
T ss_pred CC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECC-C
Confidence 43 32232 3688899999999987 789999999999999953 245567788999999999998 6
Q ss_pred CCEEEEEECCCcEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 155 NNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 155 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
+.+|++|+.|+.|++||+.. ..+...+ .+...+.+++|.+ ++.+++ ++.|+.|++||+.+++.+
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp--~~~~la-~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNP--KLQWVA-VGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS--SSCEEE-EEESSCEEEEESSSCCSC
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECC--CCCEEE-EECCCCEEEEEeCCCCCC
Confidence 89999999999999999954 3344444 3445699999954 455555 556888999999876543
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=234.73 Aligned_cols=215 Identities=13% Similarity=0.180 Sum_probs=191.7
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
...+.+|..+|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.++.|+|++++|++++.||.|++||++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 34588999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CcceEEEeccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCcee----------eeeeeeccee--eEEEEEE
Q psy4653 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAWA----------CQQVFEGHTH--YVMQIVI 150 (229)
Q Consensus 88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~~----------~~~~~~~~~~--~v~~~~~ 150 (229)
+++.+..+. +...|.+++|+|++.++++++.+ +.|++||+..... ....+..|.. .+..+.|
T Consensus 105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999888887 88899999999999999999999 9999999865422 1222334444 7999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 151 NPKDNNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+| ++.++++++.|+.|++||+++ ...+..+..|...+.+++|. +++.+|++++.|+.|++||+++++++..+.
T Consensus 184 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 184 ST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS--PDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp CG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC--CCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 98 688999999999999999988 67788889999999999995 466789999999999999999999888775
No 41
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-35 Score=237.04 Aligned_cols=215 Identities=18% Similarity=0.211 Sum_probs=188.8
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 88 (229)
+..|..+|.+++|+|++++|++++.|+.|++||+.+++ .+..+..|...|.++.|+|++++|++|+.|+.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45689999999999999999999999999999999987 7888888889999999999999999999999999999988
Q ss_pred cceEE--EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 89 LERFH--SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 89 ~~~~~--~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
++... .+..|...|.+++|+|+++++++++.|+.|++||++.... ......+|...+..+.|+| ++.+|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcC
Confidence 76433 3467889999999999999999999999999999976542 2344467888999999998 6789999999
Q ss_pred CCcEEEEeCC------------------CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 164 DRTVKVWQLG------------------SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 164 d~~i~~wd~~------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
|+.|++||++ .+.++..+.+|...+.+++|.+ ++.+|++++.|+.|++||+++++++.++
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA--NGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS--SSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC--CCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 9999999953 5667777888999999999954 5568999999999999999999998888
Q ss_pred ccC
Q psy4653 226 ESG 228 (229)
Q Consensus 226 ~~~ 228 (229)
..+
T Consensus 241 ~~~ 243 (372)
T 1k8k_C 241 ASE 243 (372)
T ss_dssp ECS
T ss_pred ccC
Confidence 765
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.5e-36 Score=238.43 Aligned_cols=217 Identities=22% Similarity=0.305 Sum_probs=179.9
Q ss_pred hhhcccCCCceEEEEEcc--CCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeE
Q psy4653 8 KRKLTARSDRVKCCDLHP--TEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQV 81 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i 81 (229)
...+.+|+.+|.+++|+| ++..|++|+.|++|++||+++++ ....+..|...|.++.|+|+ +++|++|+.|+.|
T Consensus 50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 356889999999999976 48899999999999999999874 45566778889999999998 7899999999999
Q ss_pred EEEECCCcce---EEEeccCCCceeEEEEcCC-----------------CCEEEEEeCCCcEEEEecCCc--eeeeeeee
Q psy4653 82 CVFNYNTLER---FHSFEAHSDYVRCVAVHPT-----------------QPFLLTSSDDMLIKLWNWEKA--WACQQVFE 139 (229)
Q Consensus 82 ~iwd~~~~~~---~~~~~~h~~~i~~v~~~~~-----------------~~~~~s~~~d~~v~lwd~~~~--~~~~~~~~ 139 (229)
++||++.... ...+.+|...|.+++|+|+ +.+|++++.|++|++||++.. ......+.
T Consensus 130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~ 209 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209 (316)
T ss_dssp EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence 9999986532 3456789999999999997 368999999999999999644 23456678
Q ss_pred cceeeEEEEEEcCCC---CCEEEEEECCCcEEEEeCCCCC----ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653 140 GHTHYVMQIVINPKD---NNTFASASLDRTVKVWQLGSAS----PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212 (229)
Q Consensus 140 ~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~ 212 (229)
+|...|..+.|+|.. +.+|++|+.|++|++||+.... ....+..|...|.+++|. +++++|++|+.|++|+
T Consensus 210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~g~~las~~~D~~v~ 287 (316)
T 3bg1_A 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS--ITANILAVSGGDNKVT 287 (316)
T ss_dssp CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC--TTTCCEEEEESSSCEE
T ss_pred cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc--CCCCEEEEEcCCCeEE
Confidence 999999999999842 3789999999999999987521 234567788899999995 4566899999999999
Q ss_pred EEECCC-C--eEEEeec
Q psy4653 213 IWDYQN-K--TCVQTLE 226 (229)
Q Consensus 213 iwd~~~-~--~~~~~~~ 226 (229)
||+... + .+++++.
T Consensus 288 lw~~~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 288 LWKESVDGQWVCISDVN 304 (316)
T ss_dssp EEEECTTSCEEEEEECC
T ss_pred EEEECCCCcEEEeeecc
Confidence 999863 3 5666655
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.1e-35 Score=239.14 Aligned_cols=217 Identities=18% Similarity=0.244 Sum_probs=183.7
Q ss_pred chhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcC-CCCEEEEEeCCCe
Q psy4653 5 LDIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVP-RKNWIVTGSDDMQ 80 (229)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~sg~~d~~ 80 (229)
+.+.+.+.+|..+|.+++|+|++ ++|++|+.||.|++||+.+++....+. .+...|.++.|+| ++++|++|+.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 34455678999999999999999 899999999999999999988877765 4778999999999 6799999999999
Q ss_pred EEEEECCCcceEEEeccC---CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653 81 VCVFNYNTLERFHSFEAH---SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h---~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (229)
|++||++. +.+..+..+ ...|.+++|+|+++++++++.|+.|++||+.. .....+.+|...|.++.|+|....+
T Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEEEECCCCCCE
Confidence 99999985 455555444 47899999999999999999999999999943 3456678899999999999953339
Q ss_pred EEEEECCCcEEEEeCCC----CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 158 FASASLDRTVKVWQLGS----ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 158 l~s~~~d~~i~~wd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+++|+.|+.|++||+++ ...+..+ +|...+.+++|.+ .++.+|++++.|+.|++||+++++++.++.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNP-TDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECT-TTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcC-CCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 99999999999999987 4444444 6889999999953 156689999999999999999887766654
No 44
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.2e-35 Score=251.95 Aligned_cols=211 Identities=17% Similarity=0.245 Sum_probs=184.6
Q ss_pred hhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 9 RKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
..+.+|...|.+++|+|+++ .|++|+.|++|++||..+++.+..+..|...|.++.|+|++++|++|+.|+.|++||..
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence 45789999999999999998 48999999999999999998888999999999999999999999999999999999999
Q ss_pred CcceEEEec-------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ceeeEEEEEEcCCCCCE
Q psy4653 88 TLERFHSFE-------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVINPKDNNT 157 (229)
Q Consensus 88 ~~~~~~~~~-------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 157 (229)
+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+...... ..+.. +...+..+.+ ++..
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~ 296 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE-KTIPVGTRIEDQQLGIIW---TKQA 296 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEEECCSSGGGCEEEEEE---CSSC
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-eeecCCCCccceeEEEEE---cCCE
Confidence 988887774 79999999999999999999999999999999876433 33322 2334555565 4678
Q ss_pred EEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 158 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
+++++.|+.+++||...+.+...+.+|...|.+++|. +++.+|++++.|++|++||+.++++...+
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s--pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRVF 362 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe--CCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence 9999999999999998888788889999999999995 46779999999999999999998876654
No 45
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.4e-35 Score=247.97 Aligned_cols=201 Identities=30% Similarity=0.460 Sum_probs=181.8
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
....+.+|..+|.+++|+|++++|++++.|+.|++||. +++.+..+..+...+.++.|+|++++|++++.|+.|++||.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 34557789999999999999999999999999999995 56778888889999999999999999999999999999996
Q ss_pred CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
+++.+..+.+|...|.+++|+|+++++++++.|+.|++||... .+...+.+|...|.+++|+| ++.+|++++.|+.
T Consensus 456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~ 531 (577)
T 2ymu_A 456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT 531 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSE
T ss_pred -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCE
Confidence 4567788899999999999999999999999999999999643 45667889999999999998 6889999999999
Q ss_pred EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd 215 (229)
|++||. +++++..+.+|...|.+++|. +++.+|+|++.|++|++||
T Consensus 532 v~lwd~-~~~~~~~~~~h~~~v~~~~fs--~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 532 VKLWNR-NGQLLQTLTGHSSSVWGVAFS--PDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECT-TSCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred EEEEeC-CCCEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCEEEEeC
Confidence 999996 567888899999999999995 4667899999999999997
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-34 Score=235.14 Aligned_cols=201 Identities=10% Similarity=0.022 Sum_probs=168.5
Q ss_pred cCCCceEEEEEccCCCeEEEEE--ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASL--YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE 90 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~ 90 (229)
.+.+.|.+++|+|||+++++++ .|+.|++||+++++.+..+. +..+|.++.|+|++++|++++.++ +.+|+..+++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence 4455689999999999987654 68999999999999888875 667899999999999999998665 5666666655
Q ss_pred eEE--EeccCCCceeEEEEcCCCCEEEEEeCCC----cEEEEecCCcee---eeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653 91 RFH--SFEAHSDYVRCVAVHPTQPFLLTSSDDM----LIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKDNNTFASA 161 (229)
Q Consensus 91 ~~~--~~~~h~~~i~~v~~~~~~~~~~s~~~d~----~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 161 (229)
.+. ....|...|.+++|+|++.++++++.|+ .+++|++..... ....+.+|..+|.+++|+| ++.+||+|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasg 287 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLA 287 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEE
Confidence 443 3456888999999999999999998887 588888765432 1345678889999999999 78999999
Q ss_pred ECCCcEEEEeCCCCCceEEE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 162 SLDRTVKVWQLGSASPNFTL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 162 ~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
+.|++|++||+++++++..+ ++|...|.+++|+ +++++|+|||.|++|+|||+..
T Consensus 288 s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS--pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS--PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC--TTSCEEEEEETTSEEEEEECCT
T ss_pred cCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC--CCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999988875 7899999999994 5677999999999999999853
No 47
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.1e-34 Score=244.49 Aligned_cols=211 Identities=31% Similarity=0.455 Sum_probs=189.8
Q ss_pred hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 88 (229)
..+.+|..+|.+++|+|+++.+++++.||.|++||. +++.+..+..+..++.++.|+|++++|++|+.|+.|++||. +
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~ 415 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 415 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence 456789999999999999999999999999999995 56778888888899999999999999999999999999995 4
Q ss_pred cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168 (229)
Q Consensus 89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 168 (229)
++.+..+.+|...|.+++|+|+++++++++.|++|++||+.. .....+.+|...|.+++|+| ++.+|++++.|+.|+
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~ 492 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 492 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEE
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEE
Confidence 577888899999999999999999999999999999999743 34566788999999999998 789999999999999
Q ss_pred EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+||. +++.+..+.+|...|.+++|. +++++|++++.||.|++||. +++++.++.+|
T Consensus 493 iw~~-~~~~~~~~~~h~~~v~~l~~s--~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h 548 (577)
T 2ymu_A 493 LWNR-NGQLLQTLTGHSSSVRGVAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 548 (577)
T ss_dssp EEET-TSCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred EEcC-CCCEEEEEeCCCCCEEEEEEc--CCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence 9996 567888999999999999995 46678999999999999996 57788888776
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-35 Score=240.71 Aligned_cols=219 Identities=13% Similarity=0.313 Sum_probs=181.9
Q ss_pred hhhhc-ccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCC---CC---eEEEEEecCcCeEEEEEcCCCCEEEEEeCC
Q psy4653 7 IKRKL-TARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHET---NQ---NVKSFEVCDLPVRAAKFVPRKNWIVTGSDD 78 (229)
Q Consensus 7 ~~~~~-~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 78 (229)
+..++ .+|.++|.+++|+| ++++|++|+.||.|++||+.+ +. ....+ .|..+|.++.|+|++++|++|+.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 34456 88999999999999 999999999999999999977 43 22333 478899999999999999999999
Q ss_pred CeEEEEECC---CcceEEEec----------c--CCCceeEEE--EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-
Q psy4653 79 MQVCVFNYN---TLERFHSFE----------A--HSDYVRCVA--VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG- 140 (229)
Q Consensus 79 ~~i~iwd~~---~~~~~~~~~----------~--h~~~i~~v~--~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~- 140 (229)
|.|++||++ .++....+. . +...+.++. +++++.++++++.|+.|++||++... ....+.+
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~ 211 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQIIENS 211 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEEEccC
Confidence 999999984 444333222 1 455667776 56789999999999999999998764 4555666
Q ss_pred -ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeC--CCcCEEEEeeCCCeEEEEEC
Q psy4653 141 -HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHG--GDKPYLISGADDRLVKIWDY 216 (229)
Q Consensus 141 -~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~~~l~s~s~d~~i~iwd~ 216 (229)
|...|.++.|+| ++.+|++|+.|+.|++||++.++++..+. .|...|.++++.+. +++.+|++|+.||.|++||+
T Consensus 212 ~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 212 PRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp GGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 889999999998 68999999999999999999988888876 77778999977543 45669999999999999999
Q ss_pred CCCeEEEeeccC
Q psy4653 217 QNKTCVQTLESG 228 (229)
Q Consensus 217 ~~~~~~~~~~~~ 228 (229)
++++++.++..+
T Consensus 291 ~~~~~~~~~~~~ 302 (437)
T 3gre_A 291 VKGHCQYAFINS 302 (437)
T ss_dssp TTTEEEEEEESS
T ss_pred CCCcEEEEEEcC
Confidence 999999888754
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-34 Score=238.18 Aligned_cols=209 Identities=13% Similarity=0.149 Sum_probs=180.0
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
....+.+|..+|.+++|+|+++.|++|+.|+.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||+
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeccC---CCc---------------------eeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce
Q psy4653 87 NTLERFHSFEAH---SDY---------------------VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142 (229)
Q Consensus 87 ~~~~~~~~~~~h---~~~---------------------i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~ 142 (229)
++++.+..+..| ... +.+++|+|+++++++++.|+.|++||++..........+|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 290 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT 290 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence 999888887653 333 44455688999999999999999999988766666667788
Q ss_pred eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-PNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 143 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
..+.++.|+|....+|++|+.|+.|++||++++. ++..+.. |...+.++.+ + ++.+|++++.|+.|++||+..
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~--~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A--AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E--TTEEEEEETTTEEEEEEEECC
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C--CCCEEEEecCCccEEEEeccC
Confidence 8999999999543399999999999999998864 4777777 5667788765 3 345899999999999999876
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.4e-34 Score=249.35 Aligned_cols=213 Identities=25% Similarity=0.473 Sum_probs=184.5
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.+.+.+|+..|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||..
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CcceEEE---eccCCCceeEEEEcCCC--CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 88 TLERFHS---FEAHSDYVRCVAVHPTQ--PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 88 ~~~~~~~---~~~h~~~i~~v~~~~~~--~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
....... ..+|...|.+++|+|++ ..+++++.|++|++||++.. .+...+.+|...|.++.|+| ++.+|++|+
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~ 580 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSP-DGSLCASGG 580 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeC-CCCEEEEEe
Confidence 5433322 24688899999999986 57999999999999999876 45667789999999999998 689999999
Q ss_pred CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
.|+.|++||+++++++..+..+ ..+.+++|++ ++.+|++ +.|+.|+|||+++++++..+.
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp--~~~~l~~-~~~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP--NRYWLCA-ATEHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp TTSBCEEEETTTTEEEECCBCS-SCEEEEEECS--SSSEEEE-EETTEEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECCCCceEEEecCC-CcEEEEEEcC--CCcEEEE-EcCCCEEEEECCCCCChhhhc
Confidence 9999999999998887776654 4688999854 4545554 556779999999999888765
No 51
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=238.15 Aligned_cols=211 Identities=17% Similarity=0.313 Sum_probs=176.8
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-----------eEEEEEecC------------cCeEEEEEcCCC-
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-----------NVKSFEVCD------------LPVRAAKFVPRK- 69 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 69 (229)
|.+.|.+++|+|++++|++|+.||.|++||+.+++ ....+..|. ..|.++.|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999999877 466777787 789999999998
Q ss_pred -CEEEEEeCCCeEEEEECCCcceE---------------------------------------EE-eccCCCceeEEEEc
Q psy4653 70 -NWIVTGSDDMQVCVFNYNTLERF---------------------------------------HS-FEAHSDYVRCVAVH 108 (229)
Q Consensus 70 -~~l~sg~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~i~~v~~~ 108 (229)
..|++++.|+.|++||+..++.. .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998754321 12 36799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceeeee-------eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc----
Q psy4653 109 PTQPFLLTSSDDMLIKLWNWEKAWACQQ-------VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---- 177 (229)
Q Consensus 109 ~~~~~~~s~~~d~~v~lwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---- 177 (229)
|++++++++ .|+.|++||++....... .+.+|...|.++.|+|..+.+|++|+.|+.|++||++++..
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 799999999985434333 25688999999999995338999999999999999998876
Q ss_pred eEEEecCCC------------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC-CeEEEeeccC
Q psy4653 178 NFTLEGHEK------------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLESG 228 (229)
Q Consensus 178 ~~~~~~h~~------------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~ 228 (229)
...+..|.. .+.+++|. +++.+|++++. +.|++||+++ ++++.++..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFS--HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEEC--TTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred eeEeccCCCccccccccccCceEEEEEEC--CCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 678888876 89999995 46678999999 9999999997 7777777654
No 52
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.3e-34 Score=228.11 Aligned_cols=220 Identities=19% Similarity=0.299 Sum_probs=178.3
Q ss_pred chhhhhcccCCCceEEEEEccC---CCeEEEEEecCeEEEEEcCC-CCeE-EEEEecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653 5 LDIKRKLTARSDRVKCCDLHPT---EPWMLASLYNGHVHVWNHET-NQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79 (229)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~v~~wd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~d~ 79 (229)
++..+.+.+|..+|.+++|+|+ ++.|++|+.||.|++||+.+ ++.+ ..+..|...|.++.|+|++++|++|+.||
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3455668899999999999999 59999999999999999998 5554 67788899999999999999999999999
Q ss_pred eEEEEECCCcceEEEeccCCCceeEEEE--cCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce---------------
Q psy4653 80 QVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT--------------- 142 (229)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~--~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~--------------- 142 (229)
.|++||+++++.+. +..|...|.+++| +|++.++++++.|+.|++||++.... ...+..+.
T Consensus 109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYCADVIYPMAVVA 186 (368)
T ss_dssp EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSSCEEEEEEETTEEEEE
T ss_pred cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCCCceEEEecCCeeEEE
Confidence 99999999887665 5669999999999 89999999999999999999976532 22222111
Q ss_pred --------------------------eeEEEEEEcCC---CCCEEEEEECCCcEEEEeCCCC---CceEEEecCCC----
Q psy4653 143 --------------------------HYVMQIVINPK---DNNTFASASLDRTVKVWQLGSA---SPNFTLEGHEK---- 186 (229)
Q Consensus 143 --------------------------~~v~~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~---- 186 (229)
..+..+.+.+. ....+++++.|+.|++||++.. .....+.+|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 11222222221 1123999999999999999877 55677788765
Q ss_pred --------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 187 --------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 187 --------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
.+.+++|.+ ++.+|++|+.||.|++||+++++++.++..|
T Consensus 267 ~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHP--VHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp -CCCEEECCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred ccccccccceEEEEEec--CCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 699999854 5668999999999999999999999988765
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-33 Score=235.48 Aligned_cols=213 Identities=24% Similarity=0.409 Sum_probs=187.8
Q ss_pred hhhcccCCCce-EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 8 KRKLTARSDRV-KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 8 ~~~~~~~~~~v-~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
...+.+|...| .|+.+ +++.+++|+.||.|++||+.+++.+..+..|...|.++.|+|++ .|++|+.||.|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34678999986 55555 56799999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCcceEEEeccCCCceeEEEEc--CCCCEEEEEeCCCcEEEEecCCceee----------------------eeeeecce
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVH--PTQPFLLTSSDDMLIKLWNWEKAWAC----------------------QQVFEGHT 142 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~--~~~~~~~s~~~d~~v~lwd~~~~~~~----------------------~~~~~~~~ 142 (229)
++++.+..+.+|...|.+++|+ +++.++++++.|+.|++||+...... ...+.+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999998 57789999999999999999765322 34566787
Q ss_pred eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 143 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
..+..+. + ++.++++|+.|+.|++||+++.+++..+.+|...+.+++|.+ ++.+|++|+.||.|++||+++++++
T Consensus 271 ~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 271 ASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH--ERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp SCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEE
Confidence 7887774 3 568999999999999999999999999999999999999964 5568999999999999999999999
Q ss_pred EeeccC
Q psy4653 223 QTLESG 228 (229)
Q Consensus 223 ~~~~~~ 228 (229)
.+++.|
T Consensus 346 ~~~~~h 351 (464)
T 3v7d_B 346 YTLQGH 351 (464)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 998865
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-34 Score=233.26 Aligned_cols=216 Identities=12% Similarity=0.176 Sum_probs=189.7
Q ss_pred hhhhhcccCCCceEEEEEccC----C---CeEEEEEecCeEEEEEcCCCCe-----EEEEEec-----CcCeEEEEEc--
Q psy4653 6 DIKRKLTARSDRVKCCDLHPT----E---PWMLASLYNGHVHVWNHETNQN-----VKSFEVC-----DLPVRAAKFV-- 66 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~----~---~~l~~~~~dg~v~~wd~~~~~~-----~~~~~~~-----~~~v~~~~~~-- 66 (229)
.....+.+|..+|.+++|+|+ + ..|++++.||.|++||+.+++. ...+..+ ...|.++.|+
T Consensus 53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence 356668899999999999999 9 9999999999999999999886 7777777 4789999999
Q ss_pred --CCCCE-EEEEeCCCeEEEEECCC------cceEE-----Ee-------ccCCCceeEEEEcCCCCEEEEEeCCCcEEE
Q psy4653 67 --PRKNW-IVTGSDDMQVCVFNYNT------LERFH-----SF-------EAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125 (229)
Q Consensus 67 --~~~~~-l~sg~~d~~i~iwd~~~------~~~~~-----~~-------~~h~~~i~~v~~~~~~~~~~s~~~d~~v~l 125 (229)
|++++ |++|+.||.|++||+++ ++.+. .+ ..|...|.+++|+|++ ++++++.|+.|++
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI 211 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence 99999 99999999999999988 66555 66 3488899999999999 9999999999999
Q ss_pred EecCCceeeeeeeec---c---eeeEEEEEEcCCCCCEEEEEECC---CcEEEEeCCCCCceEEEec-------------
Q psy4653 126 WNWEKAWACQQVFEG---H---THYVMQIVINPKDNNTFASASLD---RTVKVWQLGSASPNFTLEG------------- 183 (229)
Q Consensus 126 wd~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~------------- 183 (229)
||++.. .....+.. | ...+..+.|+| ++.+|++++.| +.|++||+++.+++..+.+
T Consensus 212 ~d~~~~-~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 212 SELSTL-RPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp EETTTT-EEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred EECCCC-ceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence 999876 44566677 8 88999999998 68899999999 9999999999999999988
Q ss_pred CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 184 h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
|...+.+++|.+ ++.+|++++.|+.|++||+++++++.++.
T Consensus 290 ~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 290 HSSWVMSLSFND--SGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp BSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cCCcEEEEEECC--CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999999999954 56699999999999999999999999987
No 55
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-34 Score=233.09 Aligned_cols=204 Identities=17% Similarity=0.220 Sum_probs=179.7
Q ss_pred CCCceEEEEEccC----CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q psy4653 14 RSDRVKCCDLHPT----EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 14 ~~~~v~~~~~~p~----~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~ 88 (229)
|...|.+++|+|+ +++|++|+.||.|++||+.+++.+..+..+..+|.++.|+| ++++|++|+.||.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6678999999999 66899999999999999999999999998999999999999 899999999999999999999
Q ss_pred cceEEEe---ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee---------------------------eee
Q psy4653 89 LERFHSF---EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ---------------------------QVF 138 (229)
Q Consensus 89 ~~~~~~~---~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~---------------------------~~~ 138 (229)
++.+..+ ..|...|.+++|+|++.++++++.|+.|++||++...... ...
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 8888887 6899999999999999999999999999999997642211 112
Q ss_pred ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc--------------eEEEecCCCceEEEEEEeCCCcCEEEE
Q psy4653 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP--------------NFTLEGHEKGVNCVDYYHGGDKPYLIS 204 (229)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~~~l~s 204 (229)
.+|...|.++.|+ +.++++++.|+.|++||+++... +..+..|...+.+++|.+.+++.+|++
T Consensus 228 ~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 228 DIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred cCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 2388889999997 56999999999999999987644 667788988999999987644779999
Q ss_pred eeCCCeEEEEECCCCe
Q psy4653 205 GADDRLVKIWDYQNKT 220 (229)
Q Consensus 205 ~s~d~~i~iwd~~~~~ 220 (229)
|+.||.|++||+++++
T Consensus 305 ~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 305 GNQVGKLYVWDLEVED 320 (366)
T ss_dssp ECTTSCEEEEECCSSS
T ss_pred EecCCcEEEEECCCCC
Confidence 9999999999999875
No 56
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.4e-34 Score=233.13 Aligned_cols=210 Identities=15% Similarity=0.185 Sum_probs=179.8
Q ss_pred hhhcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCC-------CeEEEEEecCcCeEEEEEcCCC-CEEEEEeCC
Q psy4653 8 KRKLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETN-------QNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDD 78 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d 78 (229)
...+.+|..+|.+++|+| ++..|++|+.||.|++||+.++ +.+..+..|...|.++.|+|++ ++|++|+.|
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 445789999999999999 8999999999999999999987 5677888899999999999998 799999999
Q ss_pred CeEEEEECCCcceEEEe--ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-EEEEEEcCCCC
Q psy4653 79 MQVCVFNYNTLERFHSF--EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-VMQIVINPKDN 155 (229)
Q Consensus 79 ~~i~iwd~~~~~~~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 155 (229)
+.|++||+++++.+..+ ..|...|.+++|+|++.++++++.|+.|++||++..........+|.+. +..+.|+| ++
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 232 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EG 232 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TT
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CC
Confidence 99999999999998888 7899999999999999999999999999999998775443332677665 88899998 67
Q ss_pred CEEEEE---ECCCcEEEEeCCCCCc-eEEEe-cCCCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECCCCe
Q psy4653 156 NTFASA---SLDRTVKVWQLGSASP-NFTLE-GHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQNKT 220 (229)
Q Consensus 156 ~~l~s~---~~d~~i~~wd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~ 220 (229)
.++++| +.|+.|++||+++... +.... .|...+.+++|.+ ++.+|+ +|+.|+.|++||+++++
T Consensus 233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP--DTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET--TTTEEEEEETTCSCEEEEEECSST
T ss_pred cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC--CCCEEEEEEcCCCeEEEEEecCCC
Confidence 888888 7999999999987654 33333 4667789999864 445664 66689999999999877
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-34 Score=230.71 Aligned_cols=205 Identities=16% Similarity=0.311 Sum_probs=176.9
Q ss_pred cccCCCceEEEEEccC----CCeEEEEEecCeEEEEEcCCCCeEEEEEec-----CcCeEEEEEcCC----CCEEEEEeC
Q psy4653 11 LTARSDRVKCCDLHPT----EPWMLASLYNGHVHVWNHETNQNVKSFEVC-----DLPVRAAKFVPR----KNWIVTGSD 77 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~----~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~----~~~l~sg~~ 77 (229)
..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+..+..+ ...+.++.|+|+ +++|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4489999999999994 567888888999999999988877766543 367999999998 679999999
Q ss_pred CCeEEEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeee---ecceeeEEEEEEcCC
Q psy4653 78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVF---EGHTHYVMQIVINPK 153 (229)
Q Consensus 78 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~---~~~~~~v~~~~~~~~ 153 (229)
||.|++||+++++.+..+.+|...|.+++|+| ++.++++++.|+.|++||++.... ...+ .+|...|..+.|+|
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~- 171 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDL- 171 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECT-
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECC-
Confidence 99999999999999999999999999999999 899999999999999999987643 4444 67899999999998
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCceEEEe----------------------------cCCCceEEEEEEeCCCcCEEEEe
Q psy4653 154 DNNTFASASLDRTVKVWQLGSASPNFTLE----------------------------GHEKGVNCVDYYHGGDKPYLISG 205 (229)
Q Consensus 154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------------------------~h~~~v~~~~~~~~~~~~~l~s~ 205 (229)
++.+|++++.|+.|++||+++.+....+. .|...+.+++|. +.+|+++
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~ 247 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----GDLILSK 247 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----TTEEEEE
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----CCEEEEE
Confidence 68899999999999999998764433332 388899999995 3489999
Q ss_pred eCCCeEEEEECCCCeE
Q psy4653 206 ADDRLVKIWDYQNKTC 221 (229)
Q Consensus 206 s~d~~i~iwd~~~~~~ 221 (229)
+.|+.|++||+++++.
T Consensus 248 ~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 248 SCENAIVCWKPGKMED 263 (366)
T ss_dssp CSSSEEEEEEESSTTC
T ss_pred ecCCEEEEEeCCCccc
Confidence 9999999999987643
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-32 Score=218.43 Aligned_cols=207 Identities=15% Similarity=0.276 Sum_probs=183.5
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE 90 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~ 90 (229)
+|..+|.+++|+|+++.+++++.||.|++||+++++ ....+..+...+.++.|+|++++|++++.|+.|++||+++++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 789999999999999999999999999999999987 455666777889999999999999999999999999999999
Q ss_pred eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653 91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170 (229)
Q Consensus 91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 170 (229)
.+..+..|...|.+++|+|+++++++++.|+.|++||++....... + .+...+..+.|+| ++.++++++.|+.|++|
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-H-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVL 251 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-E-ECSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-e-cCCCceEEEEECC-CCCEEEEEcCCCcEEEE
Confidence 9999999999999999999999999999999999999987644333 3 3667799999998 68899999999999999
Q ss_pred eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
|++..+. ..+..|...+.+++|. +++.+|++++.||.|++||+++++.+...
T Consensus 252 ~~~~~~~-~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 252 HVNKPDK-YQLHLHESCVLSLKFA--YCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp ETTSSCE-EEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCCCCe-EEEcCCccceeEEEEC--CCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence 9987654 5678899999999995 46678999999999999999998877554
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-34 Score=234.02 Aligned_cols=217 Identities=10% Similarity=0.169 Sum_probs=188.5
Q ss_pred chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC------eEEEEEecCcCeEEEEEcCC----C---CE
Q psy4653 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ------NVKSFEVCDLPVRAAKFVPR----K---NW 71 (229)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~ 71 (229)
+...+.+.+|..+|.+++|+| +.|++|+.||.|++||+.+++ .+..+..+..+|.++.|+|+ + ++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 356677899999999999999 789999999999999999988 67888888899999999999 9 99
Q ss_pred EEEEeCCCeEEEEECCCcce-----EEEeccC-----CCceeEEEEc----CCCCE-EEEEeCCCcEEEEecCC------
Q psy4653 72 IVTGSDDMQVCVFNYNTLER-----FHSFEAH-----SDYVRCVAVH----PTQPF-LLTSSDDMLIKLWNWEK------ 130 (229)
Q Consensus 72 l~sg~~d~~i~iwd~~~~~~-----~~~~~~h-----~~~i~~v~~~----~~~~~-~~s~~~d~~v~lwd~~~------ 130 (229)
|++|+.|+.|++||+++++. +..+..| ...|.+++|+ |++.+ +++++.|+.|++||++.
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999988776 7888888 5899999999 99999 99999999999999976
Q ss_pred ceeee----eee-------ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec---C---CCceEEEEE
Q psy4653 131 AWACQ----QVF-------EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---H---EKGVNCVDY 193 (229)
Q Consensus 131 ~~~~~----~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h---~~~v~~~~~ 193 (229)
..... ..+ ..|...+.++.|+| ++ ++++++.|+.|++||+++.+++..+.. | ...+.+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 32222 134 34788899999998 56 999999999999999999998899988 8 889999999
Q ss_pred EeCCCcCEEEEeeCC---CeEEEEECCCCeEEEeecc
Q psy4653 194 YHGGDKPYLISGADD---RLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 194 ~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~ 227 (229)
.+ ++.+|++++.| +.|++||+++++++.++..
T Consensus 242 ~~--~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 242 SP--QGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 276 (397)
T ss_dssp CS--STTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred CC--CCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence 54 56689999999 9999999999999988875
No 60
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-34 Score=234.97 Aligned_cols=207 Identities=11% Similarity=0.159 Sum_probs=170.2
Q ss_pred hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~ 82 (229)
+..+.+.+|..+|.+++|+|++++|++++.|+.|++||+.+++ ....+..+...+.++.|+|++++|++|+.|+.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 125 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS 125 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence 4556788999999999999999999999999999999999977 5566667888999999999999999999999999
Q ss_pred EEECCCcc---eEEEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-----------------eeeeeeeecc
Q psy4653 83 VFNYNTLE---RFHSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-----------------WACQQVFEGH 141 (229)
Q Consensus 83 iwd~~~~~---~~~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-----------------~~~~~~~~~~ 141 (229)
+||+++++ ....+.. |...|.+++|+|++.++++++.|+.|++||+... ..+...+ +|
T Consensus 126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 204 (377)
T 3dwl_C 126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS 204 (377)
T ss_dssp ECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC
T ss_pred EEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC
Confidence 99998876 3667777 9999999999999999999999999999998521 2334445 88
Q ss_pred eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc----eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP----NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217 (229)
Q Consensus 142 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~ 217 (229)
...|.++.|+| ++.+|++++.|+.|++||+.+++. +..+.+|...+.+++|.+ ++.+|++|+.|+.+ +|+..
T Consensus 205 ~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 205 GGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN--ESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE--TTEEEEEESSSSEE-EECCC
T ss_pred CceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC--CCCEEEEEcCCcEE-EEEeC
Confidence 99999999998 688999999999999999998887 788899999999999976 45588888877666 66665
No 61
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-33 Score=219.47 Aligned_cols=214 Identities=18% Similarity=0.250 Sum_probs=187.3
Q ss_pred cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653 4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83 (229)
Q Consensus 4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i 83 (229)
.+++.+.+.+|..+|.+++| |+++.|++++.||.|++||+.+++....+..+...+.++.|+|++++|++|+.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 35677889999999999999 99999999999999999999999988888889999999999999999999999999999
Q ss_pred EECCCc---ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653 84 FNYNTL---ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 84 wd~~~~---~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 160 (229)
|++... +.+..+..|...|.++.| ++.++++++.|+.|++||. ......+..|...+..+.+.|.++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 998653 557778899999999999 5679999999999999992 24466677899999999998867899999
Q ss_pred EECCCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 161 ASLDRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 161 ~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
++.|+.|++|| .......+.. |...+.+++|.+.+ . +++++.|+.|++||+++++++.++..|
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 99999999999 3445666666 88889999997643 3 899999999999999999999888755
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=235.65 Aligned_cols=213 Identities=14% Similarity=0.189 Sum_probs=188.0
Q ss_pred hhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCC------eEEE---EEecCcCeEEEEEcCC-CCEEEEE
Q psy4653 7 IKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQ------NVKS---FEVCDLPVRAAKFVPR-KNWIVTG 75 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~sg 75 (229)
....+.+|..+|.+++|+|+ +..|++++.||.|++||+.+++ .... +..+...+.++.|+|+ +++|+++
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 45567899999999999998 8899999999999999999886 3222 3456778999999999 7899999
Q ss_pred eCCCeEEEEECCCcceEEEeccC------CCceeEEEEcCCC-CEEEEEeCCC---cEEEEecCCceeeeeeee-cceee
Q psy4653 76 SDDMQVCVFNYNTLERFHSFEAH------SDYVRCVAVHPTQ-PFLLTSSDDM---LIKLWNWEKAWACQQVFE-GHTHY 144 (229)
Q Consensus 76 ~~d~~i~iwd~~~~~~~~~~~~h------~~~i~~v~~~~~~-~~~~s~~~d~---~v~lwd~~~~~~~~~~~~-~~~~~ 144 (229)
+.|+.|++||+++++.+..+..| ...|.+++|+|++ .++++++.|+ .|++||++........+. +|...
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG 264 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence 99999999999999888888766 7889999999997 5899999998 999999987655666677 89999
Q ss_pred EEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCc-CEEEEeeCCCeEEEEECCCCeE
Q psy4653 145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK-PYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 145 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
|..+.|+|.++.+|++++.|+.|++||+++++++..+.+|...+.+++|.+ ++ .+|++++.|+.|++||+++++.
T Consensus 265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP--EAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT--TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC--CCCCEEEEEecCCcEEEEEccCCCC
Confidence 999999986788999999999999999999999999999999999999954 44 6899999999999999987754
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-34 Score=253.63 Aligned_cols=207 Identities=13% Similarity=0.152 Sum_probs=180.6
Q ss_pred ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653 12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91 (229)
Q Consensus 12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 91 (229)
.||...|.+++|+|++++||+|+.||.|++||..+.+....+. +..+|.++.|+| +++|++++.|+.|++||+++++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 4899999999999999999999999999999998876655433 567899999999 88999999999999999999988
Q ss_pred EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee----------eeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653 92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ----------QVFEGHTHYVMQIVINPKDNNTFASA 161 (229)
Q Consensus 92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~s~ 161 (229)
+..+. |...|++++|+|++.++++|+.||.|++||++...... ..+.+|.++|.+++|+|.++.++++|
T Consensus 92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 88876 77889999999999999999999999999998764321 23467889999999999666799999
Q ss_pred ECCCcEEEEeCCCCCceEEEecC------------------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653 162 SLDRTVKVWQLGSASPNFTLEGH------------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223 (229)
Q Consensus 162 ~~d~~i~~wd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 223 (229)
+.|+.| +||+++.+++..+..| ...|.+++|. +++.+|++|+.||+|++||+++++++.
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs--pdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH--PNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--TTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 999999 9999998888777665 4679999995 456799999999999999999998876
Q ss_pred e
Q psy4653 224 T 224 (229)
Q Consensus 224 ~ 224 (229)
.
T Consensus 248 ~ 248 (902)
T 2oaj_A 248 A 248 (902)
T ss_dssp E
T ss_pred E
Confidence 3
No 64
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-34 Score=232.97 Aligned_cols=214 Identities=17% Similarity=0.333 Sum_probs=185.3
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC----CCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET----NQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~ 87 (229)
.|..+|.+++|+|++++|++++.||.|++||+.+ .+.+..+..|..+|.++.|+|+ +++|++|+.|+.|++||++
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5889999999999999999999999999999988 4577777888899999999998 8999999999999999998
Q ss_pred Ccc------eE---EEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecc------eeeEEEEEEc
Q psy4653 88 TLE------RF---HSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGH------THYVMQIVIN 151 (229)
Q Consensus 88 ~~~------~~---~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~------~~~v~~~~~~ 151 (229)
+.+ .. ..+..|...|.+++|+|+ +.++++++.|+.|++||++.... ...+..+ ...+..+.|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccCCceEEEEEC
Confidence 776 22 234678899999999999 78999999999999999987643 3444444 7789999999
Q ss_pred CCCCCEEEEEECCC---cEEEEeCCCC-CceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 152 PKDNNTFASASLDR---TVKVWQLGSA-SPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 152 ~~~~~~l~s~~~d~---~i~~wd~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
|....++++++.|+ .|++||+++. .+...+. +|...+.+++|.+. ++.+|++++.|+.|++||+++++++.++.
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ-DEHLLLSSGRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS-CSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC-CCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence 96557999999999 9999999886 6677777 89999999999542 45689999999999999999999999887
Q ss_pred cC
Q psy4653 227 SG 228 (229)
Q Consensus 227 ~~ 228 (229)
.|
T Consensus 303 ~~ 304 (416)
T 2pm9_A 303 AR 304 (416)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=243.73 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=172.1
Q ss_pred hcccCCCceEEEEEccC------CCeEEEEEecCeEEEEEcCCCCe-----------EEEEEecCcCeEEEEEcCCCCEE
Q psy4653 10 KLTARSDRVKCCDLHPT------EPWMLASLYNGHVHVWNHETNQN-----------VKSFEVCDLPVRAAKFVPRKNWI 72 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~------~~~l~~~~~dg~v~~wd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l 72 (229)
.+.+|...|.+++|+|+ +.+|++++.||+|++||+.+++. ...+..+...|.+++|+++ +.|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 35678899999999997 56899999999999999987642 2355667789999999985 589
Q ss_pred EEEeCCCeEEEEECCCcc-eEEEeccCCCceeEE--EEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeeccee--eEE
Q psy4653 73 VTGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCV--AVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH--YVM 146 (229)
Q Consensus 73 ~sg~~d~~i~iwd~~~~~-~~~~~~~h~~~i~~v--~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~--~v~ 146 (229)
++|+.||.|++||++++. +...+.+|.+.|.+| .|+|++ .+|++++.|++|+|||++... +...+.+|.. .+.
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLV 359 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCccc
Confidence 999999999999998763 455678999999999 578887 899999999999999997653 3344555543 477
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
.++|+| ++..+++++.|++|++||++++..+..+.+|...|.+++|+ +++++|++|+.|++|++||...
T Consensus 360 ~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S--p~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 360 PVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS--RLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC--SSCCBCEEEETTTEEECCBSCS
T ss_pred ceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC--CCCCeEEEEECCCEEEEEechH
Confidence 899999 57889999999999999999988888899999999999995 4566899999999999999754
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.1e-33 Score=229.50 Aligned_cols=215 Identities=16% Similarity=0.226 Sum_probs=180.4
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.+.+.+| ..+....|+|++..|++|+.||.|++||+.+++....+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 3345555 455666789999999999999999999999998888777888999999999999999999999999999999
Q ss_pred CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ceeeEEEEEE--------------
Q psy4653 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVI-------------- 150 (229)
Q Consensus 88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~~~v~~~~~-------------- 150 (229)
+++.+..+.+|...|.+++|+|++.++++++.|+.|++||++.... ...+.. +...+..+.+
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 9998899999999999999999999999999999999999987643 334432 4445555554
Q ss_pred -------cCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeE
Q psy4653 151 -------NPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 151 -------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~ 221 (229)
+| ++.++++|+.|+.|++||++++.....+. .|...+.+++|.+ ++. +|++|+.||.|++||+++++.
T Consensus 249 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 249 KKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG--NNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCTTS
T ss_pred cccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC--CCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 55 67899999999999999999888777765 4788899999954 444 899999999999999998743
Q ss_pred -EEeecc
Q psy4653 222 -VQTLES 227 (229)
Q Consensus 222 -~~~~~~ 227 (229)
+..+..
T Consensus 326 ~~~~~~~ 332 (420)
T 3vl1_A 326 PVGEFLI 332 (420)
T ss_dssp CSEEEEE
T ss_pred chhhhhc
Confidence 555543
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=225.59 Aligned_cols=212 Identities=17% Similarity=0.247 Sum_probs=180.7
Q ss_pred ccCCCceEEEEEccCCC-eEEEEEecCeEEEEEc----CCCC------eEEEEEe----------cCcCeEEEEEcCCCC
Q psy4653 12 TARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNH----ETNQ------NVKSFEV----------CDLPVRAAKFVPRKN 70 (229)
Q Consensus 12 ~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~ 70 (229)
..|..+|.+++|+|+++ +|++|+.||.|++||+ .+++ ....+.. +...|.++.|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34668999999999999 9999999999999999 8888 4444443 466899999999999
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee---------------
Q psy4653 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ--------------- 135 (229)
Q Consensus 71 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~--------------- 135 (229)
+|++|+.||.|++|| .+++.+..+..|...|.+++|+|+++++++++.|+.|++||+.......
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 6677888899999999999999999999999999999999986543211
Q ss_pred ----------------------------------------eeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653 136 ----------------------------------------QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175 (229)
Q Consensus 136 ----------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 175 (229)
..+.+|...+..+.|+| ++.+|++++.|+.|++||++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 12345677899999998 6789999999999999999999
Q ss_pred CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 176 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+....+..|...+.+++|.+ ++ ++++++.|+.|++||+++++++..+..+
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVG--DD-KVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp SCSEEECCCSSCEEEEEEET--TT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred ccceEecCCCccEEEEEECC--CC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 98999999999999999965 44 8999999999999999999998887654
No 68
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-34 Score=250.40 Aligned_cols=213 Identities=20% Similarity=0.279 Sum_probs=181.9
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC--CCCeEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEEE
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE--TNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVCV 83 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~i 83 (229)
...+.+|..+|.+++|+|+++.+++|+.||.|++||+. +++.+..+..|..+|.++.|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 45667778888899999999988 899999999999999
Q ss_pred EECCCcc--eEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCC-----
Q psy4653 84 FNYNTLE--RFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPK----- 153 (229)
Q Consensus 84 wd~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~----- 153 (229)
||+.+++ .+..+..|...|.+++|+|+ +.++++++.|+.|++||++.... ....+.+|...|..+.|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9998876 67778889999999999999 99999999999999999976532 34456788899999999985
Q ss_pred -------CCCEEEEEECCCcEEEEeCCCCC----ceEEEecCCCceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCCe
Q psy4653 154 -------DNNTFASASLDRTVKVWQLGSAS----PNFTLEGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 154 -------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
++.++++|+.|+.|++||++++. ....+.+|...|.+++|.+.+. +.+|++|+.||.|++||+++++
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 47899999999999999998763 4456778999999999964310 5689999999999999998763
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.8e-33 Score=230.65 Aligned_cols=212 Identities=22% Similarity=0.369 Sum_probs=186.6
Q ss_pred hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEc--CCCCEEEEEeCCCeEEE
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV--PRKNWIVTGSDDMQVCV 83 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~d~~i~i 83 (229)
+....+.+|..+|.+++|+|++ .+++|+.||.|++||+++++.+..+..|...|.++.|. +++++|++|+.|+.|++
T Consensus 153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence 3445678999999999999988 89999999999999999999999999899999999998 56789999999999999
Q ss_pred EECCCcce-----------------------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec
Q psy4653 84 FNYNTLER-----------------------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG 140 (229)
Q Consensus 84 wd~~~~~~-----------------------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~ 140 (229)
||+++... +..+.+|...|.++ ++++.++++++.|+.|++||+... .....+.+
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~ 308 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSG 308 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-EEEEEECC
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC
Confidence 99986542 45567788888877 677889999999999999999876 45666788
Q ss_pred ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 141 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
|...|.++.++| ++.++++|+.|+.|++||+++++++..+.+|...+.++++. +.+|++|+.||.|++||+++++
T Consensus 309 ~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 309 HTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp CSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCC
T ss_pred CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc----CCEEEEEeCCCcEEEEECCCCc
Confidence 999999999998 68899999999999999999999999999999999999983 3589999999999999999887
Q ss_pred EEEeec
Q psy4653 221 CVQTLE 226 (229)
Q Consensus 221 ~~~~~~ 226 (229)
......
T Consensus 384 ~~~~~~ 389 (464)
T 3v7d_B 384 RKFSYH 389 (464)
T ss_dssp EEEEEE
T ss_pred eeeeec
Confidence 665543
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-33 Score=227.70 Aligned_cols=212 Identities=19% Similarity=0.281 Sum_probs=184.5
Q ss_pred ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653 12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE 90 (229)
Q Consensus 12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~ 90 (229)
.+|.+.+.+..+++++..+++++.|+.|++||+.+++....+.. +...|.++.|+|++++|++|+.||.|++||+++++
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 36666654444444456699999999999999999998877766 57789999999999999999999999999999999
Q ss_pred eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653 91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170 (229)
Q Consensus 91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 170 (229)
.+..+.+|...|.+++|+ +.++++++.|+.|++||++........+.+|...|..+.|+| ++.+|++|+.|+.|++|
T Consensus 168 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW 244 (401)
T ss_dssp EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred EEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence 999999999999999994 579999999999999999865566777889999999999998 78999999999999999
Q ss_pred eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee--CCCeEEEEECCCCeEEEeecc
Q psy4653 171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA--DDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~ 227 (229)
|+++..+...+..|...+.+++|.+.+ ..++++|+ .|+.|++||+++++++.+++.
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~-~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~ 302 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQ-SNLLATGGGTMDKQIHFWNAATGARVNTVDA 302 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTS-TTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred cCCCCCccEEecCCcceEEEEEECCCC-CCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 999999999999999999999996533 34777765 899999999999999888764
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=226.69 Aligned_cols=212 Identities=20% Similarity=0.333 Sum_probs=179.6
Q ss_pred hhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCC
Q psy4653 6 DIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDM 79 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~ 79 (229)
+..+.+.+|..+|.+++|+|+ +..|++++.||.|++||+.+++ .+..+..+...+.++.|+|+ +++|++|+.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 445568899999999999987 8999999999999999999987 56667778889999999999 99999999999
Q ss_pred eEEEEECCCcc--eEEEeccCCCceeEEEEcC-------------CCCEEEEEeCCCcEEEEecCCce---eeeeeeecc
Q psy4653 80 QVCVFNYNTLE--RFHSFEAHSDYVRCVAVHP-------------TQPFLLTSSDDMLIKLWNWEKAW---ACQQVFEGH 141 (229)
Q Consensus 80 ~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~-------------~~~~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~ 141 (229)
.|++||+.... ....+..|...|.+++|+| ++.++++++.|+.|++||++... .....+.+|
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h 205 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence 99999998763 3456678999999999999 68999999999999999986543 244567789
Q ss_pred eeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCCCce-----EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653 142 THYVMQIVINPKD--NNTFASASLDRTVKVWQLGSASPN-----FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214 (229)
Q Consensus 142 ~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iw 214 (229)
..+|.++.|+|.. +.+|++++.|+.|++||++.+... .....|...+.+++|.+ ++.+|++++.||.|++|
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLW 283 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS--SSCCEEEEESSSSEEEE
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC--CCCEEEEecCCCcEEEE
Confidence 9999999999943 789999999999999999876421 12234777899999954 56689999999999999
Q ss_pred ECCCC
Q psy4653 215 DYQNK 219 (229)
Q Consensus 215 d~~~~ 219 (229)
|++.+
T Consensus 284 ~~~~~ 288 (379)
T 3jrp_A 284 KENLE 288 (379)
T ss_dssp EEEET
T ss_pred eCCCC
Confidence 99743
No 72
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-32 Score=218.72 Aligned_cols=206 Identities=16% Similarity=0.280 Sum_probs=178.9
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE---EEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV---KSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
..+|..+|.+++|+|+++++++++ ||.|++||+.+++.. ..+. .+...+.++.|+|++++|++|+.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999998 999999999887543 3333 5677899999999999999999999999999
Q ss_pred CCCcc--eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 86 YNTLE--RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 86 ~~~~~--~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
+++++ ....+..|...|.+++|+|+++++++++.|+.|++||++.. .....+.+|...+..+.|+| ++.++++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 203 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISN-DGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECC-CCCEEEEEec
Confidence 98876 56677889999999999999999999999999999999876 44566778999999999998 6789999999
Q ss_pred CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
|+.|++||+++++.+..+. +...+.+++|. +++.+|++++.|+.|++||+++++..
T Consensus 204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s--~~~~~l~~~~~~~~i~~~~~~~~~~~ 259 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYC--PTGEWLAVGMESSNVEVLHVNKPDKY 259 (337)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred CCcEEEEECCCCceEeeec-CCCceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCCeE
Confidence 9999999999887776654 56779999984 45678999999999999999988754
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.3e-33 Score=221.57 Aligned_cols=216 Identities=15% Similarity=0.252 Sum_probs=182.1
Q ss_pred hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEE
Q psy4653 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVF 84 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iw 84 (229)
....+|.+.|.+++|+|+++.|++++.||.|++||+.+++ ....+..+...+.++.|+|+++ +|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3356899999999999999999999999999999999887 3445557888999999999999 99999999999999
Q ss_pred EC-CCcceEEEecc--CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC---------ceee------------------
Q psy4653 85 NY-NTLERFHSFEA--HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---------AWAC------------------ 134 (229)
Q Consensus 85 d~-~~~~~~~~~~~--h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~---------~~~~------------------ 134 (229)
|+ ++++. ..+.+ |...|.+++|+| +.++++++.|+.|++||++. ....
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence 99 77654 67788 999999999999 99999999999999999764 2110
Q ss_pred -----------------------eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC------CceEEEecCC
Q psy4653 135 -----------------------QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA------SPNFTLEGHE 185 (229)
Q Consensus 135 -----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~h~ 185 (229)
......|...+.++.|+|.++.++++++.|+.|++|++... .+...+.+|.
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 00112345568888998724689999999999999999876 7788888886
Q ss_pred C---------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 186 K---------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 186 ~---------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
. .+.+++|.+ ++.+|++|+.||.|++||+++++++.++..+
T Consensus 243 ~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CCTTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred ccccccccceeEEEEEEcC--CCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 5 899999854 5668999999999999999999999988765
No 74
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.9e-33 Score=231.52 Aligned_cols=213 Identities=18% Similarity=0.377 Sum_probs=183.2
Q ss_pred chhhhhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCe-------EEEEEecCcCeEEEEEcC-CCCEEEEE
Q psy4653 5 LDIKRKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQN-------VKSFEVCDLPVRAAKFVP-RKNWIVTG 75 (229)
Q Consensus 5 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~sg 75 (229)
......+.+|..+|.+++|+|+++ .|++|+.||.|++||+.++.. ...+..|...|.++.|+| ++++|+++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 455566889999999999999998 999999999999999988432 345556778899999999 67899999
Q ss_pred eCCCeEEEEECCCc---ceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653 76 SDDMQVCVFNYNTL---ERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN 151 (229)
Q Consensus 76 ~~d~~i~iwd~~~~---~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (229)
+.|+.|++||+++. +.+..+..|...|++++|+|++. ++++++.|+.|++||++........+.+|...|.++.|+
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s 330 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC
Confidence 99999999999876 56677788999999999999987 688999999999999987656677788899999999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCC--------------CCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEEC
Q psy4653 152 PKDNNTFASASLDRTVKVWQLGS--------------ASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDY 216 (229)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~wd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~ 216 (229)
|....+|++++.|+.|++||+.. ...++.+.+|...+.+++|.+ ++. +|++++.||.|+||++
T Consensus 331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS--SSTTEEEEEETTSEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC--CCCCEEEEEECCCCEEEeEc
Confidence 96556899999999999999976 245667778988999999954 444 8999999999999998
Q ss_pred CCC
Q psy4653 217 QNK 219 (229)
Q Consensus 217 ~~~ 219 (229)
...
T Consensus 409 ~~~ 411 (430)
T 2xyi_A 409 AEN 411 (430)
T ss_dssp CHH
T ss_pred ccc
Confidence 643
No 75
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-33 Score=226.30 Aligned_cols=201 Identities=17% Similarity=0.280 Sum_probs=179.0
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 93 (229)
|..+|.+++|+|++++|++++.||.|++|| .+++.+..+..+...+.++.|+|++++|++++.|+.|++||+++++.+.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 688999999999999999999999999999 6778888888888999999999999999999999999999997665433
Q ss_pred --------------------------------------------------------EeccCCCceeEEEEcCCCCEEEEE
Q psy4653 94 --------------------------------------------------------SFEAHSDYVRCVAVHPTQPFLLTS 117 (229)
Q Consensus 94 --------------------------------------------------------~~~~h~~~i~~v~~~~~~~~~~s~ 117 (229)
.+..|...|.+++|+|++++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 234577789999999999999999
Q ss_pred eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCC
Q psy4653 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG 197 (229)
Q Consensus 118 ~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 197 (229)
+.|+.|++||++.. .....+.+|...+..+.|+| ++ ++++++.|+.|++||+++++.+..+..|...+.+++|. +
T Consensus 266 ~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s--~ 340 (425)
T 1r5m_A 266 SDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS--Q 340 (425)
T ss_dssp ETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC--T
T ss_pred cCCCEEEEEECCCC-ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc--C
Confidence 99999999999875 44556678889999999998 45 99999999999999999999999999999999999995 4
Q ss_pred CcCEEEEeeCCCeEEEEECCCCe
Q psy4653 198 DKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 198 ~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
++.+|++++.||.|++||+++++
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCEEEEEECCCeEEEEECCCCc
Confidence 56799999999999999999887
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.4e-33 Score=224.74 Aligned_cols=208 Identities=14% Similarity=0.181 Sum_probs=180.4
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE--EecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF--EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
....+.+|..+|.+++|+|+++.|++++.||.|++||+++++....+ ..+...+.++.|+|++++|++|+.|+.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 55668899999999999999999999999999999999988755444 4467789999999999999999999999999
Q ss_pred ECCCcce---E-EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC-----------------ceeeeeeeeccee
Q psy4653 85 NYNTLER---F-HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-----------------AWACQQVFEGHTH 143 (229)
Q Consensus 85 d~~~~~~---~-~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~-----------------~~~~~~~~~~~~~ 143 (229)
|++..+. . .....|...|.+++|+|++.++++++.|+.|++||++. .......+.+|..
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 203 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence 9987652 2 33367889999999999999999999999999999641 1244566678889
Q ss_pred eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
.+..+.|+| ++.+|++++.|+.|++||+++++++..+..|...+.+++|.+ ++.+|++| .|+.|++||+++
T Consensus 204 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 WVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT--ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE--TTEEEEEE-TTSSCEEEEEET
T ss_pred eEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec--CCCEEEEE-eCCeEEEEEccC
Confidence 999999998 678999999999999999999999999999999999999976 34467666 999999999987
No 77
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.9e-33 Score=254.44 Aligned_cols=215 Identities=21% Similarity=0.399 Sum_probs=191.5
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 89 (229)
.+.+|.+.|.+++|+|+++++++|+.||.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||+.++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCceeEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653 90 ERFHSFEAHSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167 (229)
Q Consensus 90 ~~~~~~~~h~~~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 167 (229)
+.+..+.+|...|.+++|+| ++.++++++.|+.|++||+..+ .+...+.+|...|..+.|+| ++.++++++.|+.|
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTL 767 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEec-CCCEEEEEECCCeE
Confidence 99999999999999999999 4558899999999999999876 45566778999999999998 68899999999999
Q ss_pred EEEeCCCCCceEEE-------------------------------------------------------ecCCCceEEEE
Q psy4653 168 KVWQLGSASPNFTL-------------------------------------------------------EGHEKGVNCVD 192 (229)
Q Consensus 168 ~~wd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~~~ 192 (229)
++||+.++.....+ .+|...+.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 99998665332221 15667788888
Q ss_pred EEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 193 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|. +++.++++++.|+.|++||+.++..+..+.+|
T Consensus 848 ~s--p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 881 (1249)
T 3sfz_A 848 FS--PYDHLAVIALSQYCVELWNIDSRLKVADCRGH 881 (1249)
T ss_dssp EC--SSTTEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred Ec--CCCCEEEEEeCCCeEEEEEcCCCceeeecCCC
Confidence 84 45668999999999999999999998888765
No 78
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=228.84 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=181.1
Q ss_pred cccCCCceEEEEEccCCCeE-EEEEecCeEEEEEcC--CCCeEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 11 LTARSDRVKCCDLHPTEPWM-LASLYNGHVHVWNHE--TNQNVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l-~~~~~dg~v~~wd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
..+|...|.+++|+|+++.| ++|+.||.|++||+. +++.+..+. .+...+.++.|+|++++|++|+.||.+.+|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45678899999999999997 778899999999999 888888776 4557899999999999999999999999999
Q ss_pred CCCcceEE----EeccCCCceeEEEEcCC---CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653 86 YNTLERFH----SFEAHSDYVRCVAVHPT---QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158 (229)
Q Consensus 86 ~~~~~~~~----~~~~h~~~i~~v~~~~~---~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (229)
+.+++... .+.+|...|.+++|+|+ ++++++++.|+.|++||++..........+|...|.++.|+ ++.+|
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~~l 255 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDYLL 255 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STTEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCCEE
Confidence 98766443 67889999999999999 89999999999999999987655445467899999999998 68999
Q ss_pred EEEECCCcEEEEeCCCCCceEEEecC-------------------------CCceEEEEEEeCCCcCEEEEee-CCCeEE
Q psy4653 159 ASASLDRTVKVWQLGSASPNFTLEGH-------------------------EKGVNCVDYYHGGDKPYLISGA-DDRLVK 212 (229)
Q Consensus 159 ~s~~~d~~i~~wd~~~~~~~~~~~~h-------------------------~~~v~~~~~~~~~~~~~l~s~s-~d~~i~ 212 (229)
++++.|+.|++||+++++.+..+..+ ...+.+++|. +++.+|++++ .|+.|+
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS--KNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC--SSSSEEEEEETTCSEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe--CCCCEEEEEECCCCeEE
Confidence 99999999999999999887777532 3457788875 4566888888 899999
Q ss_pred EEEC--CCC---eEEEeeccC
Q psy4653 213 IWDY--QNK---TCVQTLESG 228 (229)
Q Consensus 213 iwd~--~~~---~~~~~~~~~ 228 (229)
+|++ .++ +.+.++..+
T Consensus 334 iw~~~~~~~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 334 ILEMSEKQKGDLALKQIITFP 354 (450)
T ss_dssp EEEECSSSTTCEEEEEEEECS
T ss_pred EEEeccCCCCceeeccEeccC
Confidence 9999 665 677766543
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-33 Score=246.30 Aligned_cols=220 Identities=26% Similarity=0.434 Sum_probs=195.5
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
..+.+.+|..+|.+++|+|+++.|++|+.||.|++||+.+++.+..+..|...+.++.|+|++++|++|+.||.|++||+
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence 44567889999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCc-ceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-CCCEEEEEEC
Q psy4653 87 NTL-ERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASL 163 (229)
Q Consensus 87 ~~~-~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~ 163 (229)
+++ .....+.+|...|.+++|+| ++..+++++.|+.|++||+............+...+..+.|+|. ++.++++++.
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 876 56677888999999999999 78899999999999999997664444443444477899999872 5779999999
Q ss_pred CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|+.|++||+.++.++..+.+|...+.+++|. +++.+|++++.||.|++||+.+++.+.++..+
T Consensus 207 dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 9999999999999999999999999999995 45669999999999999999999988887654
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-32 Score=223.99 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=175.1
Q ss_pred cccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecC---cCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 11 LTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCD---LPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
+.+|...|.+++|+| ++..|++++.|+.|++||+++ +.+..+..+. ..+.++.|+|++++|++|+.|+.|++||+
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence 347999999999999 678999999999999999996 5555554443 67999999999999999999999999999
Q ss_pred CCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCce---eeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAW---ACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
.++.+..+..|...|.+++|+|+++ ++++++.|+.|++||++... .+...+ +|...|..+.|+|.++.+|++++
T Consensus 193 -~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 193 -DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp -TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred -CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 5678888999999999999999999 89999999999999997622 233334 68899999999985688999999
Q ss_pred CCCcEEEEeCCCCCceEEEecCC-------C----------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 163 LDRTVKVWQLGSASPNFTLEGHE-------K----------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 163 ~d~~i~~wd~~~~~~~~~~~~h~-------~----------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
.|+.|++||+++......+.+|. . .+.+++|.+ ++.+ +|+.|+.|++||+++++++.++
T Consensus 271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~--dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP--DDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC--CTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC--Cccc--ccCCCCeEEEEecCCCceeeee
Confidence 99999999999887777776553 1 233344432 3333 7889999999999999999988
Q ss_pred cc
Q psy4653 226 ES 227 (229)
Q Consensus 226 ~~ 227 (229)
..
T Consensus 347 ~~ 348 (383)
T 3ei3_B 347 RD 348 (383)
T ss_dssp CB
T ss_pred cC
Confidence 75
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-32 Score=226.29 Aligned_cols=204 Identities=26% Similarity=0.483 Sum_probs=183.7
Q ss_pred ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653 12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91 (229)
Q Consensus 12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 91 (229)
.+|...|.|++| +++.+++|+.||.|++||+.+++.+..+..|...|.++.| ++++|++|+.||.|++||+++++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 356677888877 7889999999999999999999999999999999999998 788999999999999999999999
Q ss_pred EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653 92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV 169 (229)
Q Consensus 92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 169 (229)
+..+.+|...|.+++|++ .++++++.|+.|++||+...... ...+.+|...|..+.+ ++.++++|+.|+.|++
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEE
Confidence 999999999999999975 59999999999999999765432 3667789999999988 4679999999999999
Q ss_pred EeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
||+++++.+..+.+|...+.++++. +.++++|+.||.|++||+++++++.++.+|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 335 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGH 335 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence 9999999999999999999999882 358999999999999999999999998865
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=222.22 Aligned_cols=211 Identities=20% Similarity=0.322 Sum_probs=176.8
Q ss_pred ccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC---CCEEEEEeCCCeEEEEECC
Q psy4653 12 TARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR---KNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 12 ~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~ 87 (229)
.+|..+|.+++|+| ++..+++++.||.|++||+.+++....+. +...+.++.|.|. ++++++|+.|+.|.+||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 46999999999999 77789999999999999999998887776 5668999999984 4599999999999999999
Q ss_pred CcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeee---------------ecceeeEEEEEEc
Q psy4653 88 TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVF---------------EGHTHYVMQIVIN 151 (229)
Q Consensus 88 ~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~---------------~~~~~~v~~~~~~ 151 (229)
+++.+..+..|...|.+++|+|+++ ++++++.|+.|++||++........+ .+|...|..+.|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 9998899999999999999999998 58899999999999997654333333 5688899999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCC-----------------------------------------------ceEEEecC
Q psy4653 152 PKDNNTFASASLDRTVKVWQLGSAS-----------------------------------------------PNFTLEGH 184 (229)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------------------------~~~~~~~h 184 (229)
| ++.+|++++.|+.|++||+.+++ ++..+.+|
T Consensus 255 ~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 255 S-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred C-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 8 68899999999999999986542 34456779
Q ss_pred CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
...|.+++|.+ ++.+|++|+.||.|++||+++++.+...+
T Consensus 334 ~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 334 YKTVDCCVFQS--NFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp SSCEEEEEEET--TTTEEEEEETTSCEEEEEECC--------
T ss_pred CCeEEEEEEcC--CCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 89999999964 55689999999999999999988776543
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=224.31 Aligned_cols=215 Identities=13% Similarity=0.207 Sum_probs=175.5
Q ss_pred hhcccCCCceEEEEEccCCCeEEE-EEe---cCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCC---CCEEEEEeCCCe
Q psy4653 9 RKLTARSDRVKCCDLHPTEPWMLA-SLY---NGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPR---KNWIVTGSDDMQ 80 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~~l~~-~~~---dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~sg~~d~~ 80 (229)
+.+.+|..+|.+++|+|+++.+++ |+. ||.|++||+.+++...... .+..+|.++.|+|+ +++|++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 346789999999999999976665 444 8999999999988755433 57789999999998 699999999999
Q ss_pred EEEEECCCcc-eEEEeccCCCceeEEE------EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeeccee----eEEEEE
Q psy4653 81 VCVFNYNTLE-RFHSFEAHSDYVRCVA------VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH----YVMQIV 149 (229)
Q Consensus 81 i~iwd~~~~~-~~~~~~~h~~~i~~v~------~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~----~v~~~~ 149 (229)
|++||+++++ .+..+.+|...|.+++ |+|+++++++++.|+.|++||++........+..|.+ .+..+.
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999999887 7888999999999995 5788999999999999999999876544555544433 688887
Q ss_pred ----EcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCC-CcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653 150 ----INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQNKTCVQT 224 (229)
Q Consensus 150 ----~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~ 224 (229)
|+| ++.++++++.|+.|++||+++.+.. ....|...+.+++|.+.+ ++.+|++|+.||.|++||+++++++..
T Consensus 172 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 172 FGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EECCCC--CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEeccCC-CCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 555 6889999999999999999887764 346678889999996421 456899999999999999987765444
Q ss_pred e
Q psy4653 225 L 225 (229)
Q Consensus 225 ~ 225 (229)
+
T Consensus 250 ~ 250 (357)
T 3i2n_A 250 F 250 (357)
T ss_dssp E
T ss_pred e
Confidence 3
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=222.50 Aligned_cols=214 Identities=20% Similarity=0.364 Sum_probs=181.4
Q ss_pred hhhhcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEE-------------ecCcCeEEEEEcC-CCCE
Q psy4653 7 IKRKLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFE-------------VCDLPVRAAKFVP-RKNW 71 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~ 71 (229)
....+.+|..+|.+++|+| ++++|++|+.||.|++||+.+++....+. .+...|.++.|+| ++++
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3445778999999999999 99999999999999999999987655543 3778899999999 7789
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCC---EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEE
Q psy4653 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148 (229)
Q Consensus 72 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~---~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~ 148 (229)
|++++.|+.|++||+.+++....+. +...+.++.++|.+. ++++++.|+.|++||++.. .....+.+|...|.++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCCCcEEEE
Confidence 9999999999999999988877776 778899999998544 8999999999999999876 4456677899999999
Q ss_pred EEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEE---------------ecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653 149 VINPKDNNTFASASLDRTVKVWQLGSAS-PNFTL---------------EGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212 (229)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~---------------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~ 212 (229)
.|+|....++++|+.|+.|++||++... +...+ ..|...+.+++|. +++.+|++++.||.|+
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT--SDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC--TTSSEEEEEETTSCEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc--CCCCEEEEecCCCeEE
Confidence 9999544479999999999999998764 33333 5688889999995 4667999999999999
Q ss_pred EEECCCCeEEEe
Q psy4653 213 IWDYQNKTCVQT 224 (229)
Q Consensus 213 iwd~~~~~~~~~ 224 (229)
+||+++++....
T Consensus 271 vwd~~~~~~~~~ 282 (408)
T 4a11_B 271 LWNSSNGENTLV 282 (408)
T ss_dssp EEETTTCCBCCC
T ss_pred EEECCCCcccee
Confidence 999998775443
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.7e-33 Score=229.77 Aligned_cols=207 Identities=20% Similarity=0.322 Sum_probs=179.0
Q ss_pred cccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCC----------CCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCC
Q psy4653 11 LTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHET----------NQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDD 78 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d 78 (229)
..+|..+|++++|+|+ +.++++++.||.|++||+.+ .+.+..+..|...+.++.|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 4579999999999998 67888889999999999987 566778888888999999999988 99999999
Q ss_pred CeEEEEECCCcce-------EEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEE
Q psy4653 79 MQVCVFNYNTLER-------FHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQI 148 (229)
Q Consensus 79 ~~i~iwd~~~~~~-------~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~ 148 (229)
|.|++||++.+.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++... .....+..|...|.++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 283 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence 9999999987321 355678999999999999 67789999999999999998653 3455567899999999
Q ss_pred EEcCCCCCEEEEEECCCcEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 149 VINPKDNNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
.|+|....++++|+.|+.|++||++. ..++..+..|...+.+++|.+.+ ..+|++++.|+.|+|||+++
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN-ETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSCCEEEEGGG
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC-CCEEEEEeCCCcEEEEeCCC
Confidence 99996555899999999999999987 56788899999999999996543 24799999999999999987
No 86
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-32 Score=234.68 Aligned_cols=217 Identities=14% Similarity=0.243 Sum_probs=192.8
Q ss_pred hhhhhcccCCCc-eEEEEEcc--CCCeEEEEEecCeEEEEEcCCC--------CeEEEEEecCcCeEEEEEcCCCCEEEE
Q psy4653 6 DIKRKLTARSDR-VKCCDLHP--TEPWMLASLYNGHVHVWNHETN--------QNVKSFEVCDLPVRAAKFVPRKNWIVT 74 (229)
Q Consensus 6 ~~~~~~~~~~~~-v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s 74 (229)
+..+.+.+|... |.+++|+| ++++|++++.||.|++||+.++ +.+..+..+..++.++.|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 455678899999 99999999 9999999999999999999855 566677778889999999999999999
Q ss_pred EeCC----CeEEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeeccee---eEE
Q psy4653 75 GSDD----MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTH---YVM 146 (229)
Q Consensus 75 g~~d----~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~---~v~ 146 (229)
++.+ +.|.+|| .++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+... .....+.+|.. .|.
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVR 210 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEE
T ss_pred eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEE
Confidence 9988 6888887 5677888899999999999999998 7999999999999999766 45566778888 999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE-e---cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-E---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
++.|+|.++.++++++.|+.|++||+.+++.+..+ . .|...+.+++|. ++.+|++++.|+.|++||+++++++
T Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL---DSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES---SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc---CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 99999943889999999999999999999988888 6 899999999995 5668999999999999999999998
Q ss_pred EeeccC
Q psy4653 223 QTLESG 228 (229)
Q Consensus 223 ~~~~~~ 228 (229)
.++..+
T Consensus 288 ~~~~~~ 293 (615)
T 1pgu_A 288 QKWTLD 293 (615)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 887654
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-32 Score=216.56 Aligned_cols=218 Identities=12% Similarity=0.215 Sum_probs=190.8
Q ss_pred hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC-----Ce
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD-----MQ 80 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----~~ 80 (229)
+....+.+|..+|.+++|+|+++.|++++.||.|++||+.+++.+..+. +...+.++.|+|++++|++++.+ +.
T Consensus 65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 3445688999999999999999999999999999999999999988887 67789999999999999999999 99
Q ss_pred EEEEECCCcc-----------eEEEeccCCC--ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEE
Q psy4653 81 VCVFNYNTLE-----------RFHSFEAHSD--YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147 (229)
Q Consensus 81 i~iwd~~~~~-----------~~~~~~~h~~--~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~ 147 (229)
|.+||++... .+..+..|.. .+.+++|+|+++++++++.|+.|++||++........+..|...|..
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD 223 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence 9999986542 3344455655 89999999999999999999999999998755667778889999999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC--------------eEEE
Q psy4653 148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR--------------LVKI 213 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--------------~i~i 213 (229)
+.|+| ++.+|++++.|+.|++||+++.+.+..+. +...+.+++|. +++.++++++.++ .+++
T Consensus 224 ~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 224 MQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVIT--PLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSSSEEEEEECCC-------------CEEEE
T ss_pred EEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEec--CCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 99998 68899999999999999999988887777 56778888884 4567899999888 8999
Q ss_pred EECCCCeEEEeeccC
Q psy4653 214 WDYQNKTCVQTLESG 228 (229)
Q Consensus 214 wd~~~~~~~~~~~~~ 228 (229)
||..+++.+..+..|
T Consensus 300 ~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 300 YHKIFEEEIGRVQGH 314 (369)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EecCCCcchhheecc
Confidence 999999999888765
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-32 Score=222.39 Aligned_cols=206 Identities=16% Similarity=0.285 Sum_probs=180.9
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC-Ccce
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN-TLER 91 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~-~~~~ 91 (229)
.|...|.+++|+|+++.|++|+.||.|++||+.+++.+..+..+...+.++.| +++.|++|+.||.|++||++ ....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 37889999999999999999999999999999999999999989999999999 45799999999999999998 4566
Q ss_pred EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE--CCCcEEE
Q psy4653 92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS--LDRTVKV 169 (229)
Q Consensus 92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~ 169 (229)
+..+.+|...|.+++|+|++.++++++.|+.|++||++.. .....+.+|...|..+.|+|....++++++ .|+.|++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 7888899999999999999999999999999999999875 345556788999999999997677888876 8999999
Q ss_pred EeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE--eeCCCeEEEEECCCCeEEEe
Q psy4653 170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS--GADDRLVKIWDYQNKTCVQT 224 (229)
Q Consensus 170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~~~~~ 224 (229)
||+.+++++..+. +...+.+++|.+ ++.+|++ |+.||.|++||+++++....
T Consensus 289 ~d~~~~~~~~~~~-~~~~v~~~~~s~--~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 289 WNAATGARVNTVD-AGSQVTSLIWSP--HSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECS--SSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred EECCCCCEEEEEe-CCCcEEEEEECC--CCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 9999998888776 456799999954 5567777 55899999999999766554
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.4e-32 Score=224.30 Aligned_cols=212 Identities=14% Similarity=0.247 Sum_probs=168.2
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL- 89 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~- 89 (229)
+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...+.++.++ ++.|++|+.|+.+.+||....
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence 45788899999999999999999999999999999999999999998888888775 679999999999999998764
Q ss_pred ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCC-------------
Q psy4653 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPK------------- 153 (229)
Q Consensus 90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~------------- 153 (229)
..+..+.+|...+.++.++|++.++++++.|+.+++|+...... .......|...|..+.|+|.
T Consensus 221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 45677889999999999999999999999999999999864321 12222333333443333332
Q ss_pred ------------------------------CCCEEEEEE--CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCE
Q psy4653 154 ------------------------------DNNTFASAS--LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY 201 (229)
Q Consensus 154 ------------------------------~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 201 (229)
++..+++++ .|+.|++||+.+.+++.++.+|...|.+++|+ +++.+
T Consensus 301 ~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s--pdg~~ 378 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS--PDGAT 378 (420)
T ss_dssp CEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSC
T ss_pred CEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCE
Confidence 234444433 67778888887778888899999999999995 46678
Q ss_pred EEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 202 LISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 202 l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
|+||+.|++|+|||+....+.++.+
T Consensus 379 l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 379 VASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp EEEEETTTEEEEECCSCSSCC----
T ss_pred EEEEecCCeEEEEECCCCCccchhh
Confidence 9999999999999997765544443
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=229.54 Aligned_cols=211 Identities=14% Similarity=0.295 Sum_probs=174.3
Q ss_pred hhhhcccCC------------CceEEEEEccCC--CeEEEEEecCeEEEEEcCCCCeE----------------------
Q psy4653 7 IKRKLTARS------------DRVKCCDLHPTE--PWMLASLYNGHVHVWNHETNQNV---------------------- 50 (229)
Q Consensus 7 ~~~~~~~~~------------~~v~~~~~~p~~--~~l~~~~~dg~v~~wd~~~~~~~---------------------- 50 (229)
+...+.+|. .+|.+++|+|++ ..|++++.|+.|++||+.+++..
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 152 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence 456688998 889999999998 78999999999999999874432
Q ss_pred -----------------EE-EEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEE-------EeccCCCceeE
Q psy4653 51 -----------------KS-FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFH-------SFEAHSDYVRC 104 (229)
Q Consensus 51 -----------------~~-~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~-------~~~~h~~~i~~ 104 (229)
.. ...|...|.++.|+|++++|++| .|+.|++||++. .+.+. .+..|...|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 12 23577889999999999999999 799999999984 33443 35689999999
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEecCCceee---eeeeeccee------------eEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653 105 VAVHPTQ-PFLLTSSDDMLIKLWNWEKAWAC---QQVFEGHTH------------YVMQIVINPKDNNTFASASLDRTVK 168 (229)
Q Consensus 105 v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~---~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~ 168 (229)
++|+|++ .++++++.|+.|++||++..... ...+.+|.. .|..+.|+| ++.+|++++. +.|+
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~ 309 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVK 309 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEE
Confidence 9999998 89999999999999999876431 456677765 899999998 7889999998 9999
Q ss_pred EEeCCC-CCceEEEecCCCc---------------eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 169 VWQLGS-ASPNFTLEGHEKG---------------VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 169 ~wd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
+||++. ++++..+.+|... +..++| ++++.+|++|+.||.|++||+++++.+
T Consensus 310 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 310 VWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW--NGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE--CTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred EEeCCCCccccceeeccccccccccccccccccccceEEEE--CCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 999987 7888888888532 223777 456678999999999999999998875
No 91
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=227.26 Aligned_cols=206 Identities=10% Similarity=0.131 Sum_probs=176.5
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecC-----------------------------------
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCD----------------------------------- 57 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~----------------------------------- 57 (229)
.++.+++|+|+|++|+ ++.++.|++||+.+++ .+..+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4789999999999544 5568999999999998 555554221
Q ss_pred -------------------cCeEEEEEcCCCCEE-EEEeCCCeEEEEECC--CcceEEEec--cCCCceeEEEEcCCCCE
Q psy4653 58 -------------------LPVRAAKFVPRKNWI-VTGSDDMQVCVFNYN--TLERFHSFE--AHSDYVRCVAVHPTQPF 113 (229)
Q Consensus 58 -------------------~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~--~~~~~~~~~--~h~~~i~~v~~~~~~~~ 113 (229)
..|.++.|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 159999999999996 999999999999998 787777776 56788999999999999
Q ss_pred EEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCCC---CCEEEEEECCCcEEEEeCCCCCceEE-EecCCC
Q psy4653 114 LLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKD---NNTFASASLDRTVKVWQLGSASPNFT-LEGHEK 186 (229)
Q Consensus 114 ~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~h~~ 186 (229)
+++++.|+.|++|++..... ....+.+|...|.++.|+| + +.+|++|+.|+.|++||++++..+.. +.+|..
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999876533 2235678999999999998 5 77999999999999999998888777 568999
Q ss_pred ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 187 ~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
.|.+++|. ++.+|++|+.|+.|++||+++++++.++.
T Consensus 243 ~v~~~~~s---d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 243 FVSSICCG---KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp CEEEEEEC---STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEC---CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 99999995 56699999999999999999999988876
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-33 Score=230.23 Aligned_cols=212 Identities=12% Similarity=0.197 Sum_probs=176.7
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcC---CCCeEEEEEe------------cCcCeEEEE--EcCCCCEEEEE
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE---TNQNVKSFEV------------CDLPVRAAK--FVPRKNWIVTG 75 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~sg 75 (229)
+|..+|.+++|+|+++.|++++.||.|++||++ +++....+.. +...+.++. +++++++|++|
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 699999999999999999999999999999995 6665554432 233456665 55789999999
Q ss_pred eCCCeEEEEECCCcceEEEecc--CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee-cceeeEEEEEEcC
Q psy4653 76 SDDMQVCVFNYNTLERFHSFEA--HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-GHTHYVMQIVINP 152 (229)
Q Consensus 76 ~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~ 152 (229)
+.|+.|++||+++++.+..+.. |...|.+++|+|++.++++++.|+.|++||++.... ...+. +|..+|..+.++|
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEecc
Confidence 9999999999999999998887 889999999999999999999999999999987643 44443 7778999998776
Q ss_pred C---CCCEEEEEECCCcEEEEeCCCCCceEEEecC--------------------------CCceEEEEEEeCCCcCEEE
Q psy4653 153 K---DNNTFASASLDRTVKVWQLGSASPNFTLEGH--------------------------EKGVNCVDYYHGGDKPYLI 203 (229)
Q Consensus 153 ~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--------------------------~~~v~~~~~~~~~~~~~l~ 203 (229)
. ++.+|++|+.|+.|++||+++++.+..+.+| ...|.+++|. ++.+|+
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~---~~~~l~ 344 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS---NDKILL 344 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE---TTEEEE
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC---CceEEE
Confidence 2 5669999999999999999988877766644 4457778885 336899
Q ss_pred EeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 204 SGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 204 s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+|+.|+.|++||+++++++.++..+
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC
T ss_pred ecCCCCeEEEEECCCcccceEEecc
Confidence 9999999999999999888777653
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4e-32 Score=225.23 Aligned_cols=209 Identities=25% Similarity=0.451 Sum_probs=186.2
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
..+.+.+|.+.|.. +++++++.+++|+.||.|++||+.+++.+..+..|...|.++.|+ ++.|++|+.||.|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34568899998744 366678999999999999999999999999999999999999998 679999999999999999
Q ss_pred CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
++++.+..+.+|...|.++.|+ +..+++++.|+.|++||+... .....+.+|...+.++.+ ++.++++|+.|+.
T Consensus 187 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 187 ETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFM 260 (445)
T ss_dssp TTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-CEEEEEECCSSCEEEEEE---CSSCEEEEETTSC
T ss_pred CcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-cEEEEEcCCcccEEEEEE---CCCEEEEEcCCCE
Confidence 9999999999999999999996 468999999999999999876 445667789999999988 4678999999999
Q ss_pred EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|++||+++++++..+.+|...+.+++| ++.++++|+.|+.|++||+++++++.++..+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 318 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE----CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE----CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence 999999999999999999999999998 4568999999999999999999999888765
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=220.17 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=173.8
Q ss_pred ccCCCceEEEEEccC---CCeEEEEEecCeEEEEEcCCCC-eEEEEEecCcCeEEEEE------cCCCCEEEEEeCCCeE
Q psy4653 12 TARSDRVKCCDLHPT---EPWMLASLYNGHVHVWNHETNQ-NVKSFEVCDLPVRAAKF------VPRKNWIVTGSDDMQV 81 (229)
Q Consensus 12 ~~~~~~v~~~~~~p~---~~~l~~~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~d~~i 81 (229)
.+|..+|.+++|+|+ +..|++|+.||.|++||+.+++ .+..+..|...+.++.| +|++++|++|+.|+.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 378999999999999 6999999999999999999988 78888889999999955 6789999999999999
Q ss_pred EEEECCCcc-eEEEeccCCC----ceeEEE----EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcC
Q psy4653 82 CVFNYNTLE-RFHSFEAHSD----YVRCVA----VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152 (229)
Q Consensus 82 ~iwd~~~~~-~~~~~~~h~~----~i~~v~----~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~ 152 (229)
++||+++++ .+..+..|.. .+.+++ |+|++.++++++.|+.|++||++.... .....|...+..+.|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDR 219 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESC
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCC
Confidence 999998876 6677766554 788888 789999999999999999999987643 23356788899999998
Q ss_pred C--CCCEEEEEECCCcEEEEeCCCCCceEEEe-----cCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCC
Q psy4653 153 K--DNNTFASASLDRTVKVWQLGSASPNFTLE-----GHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 153 ~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~ 219 (229)
. ++.++++++.|+.|++||+++..+...+. +|...+.+++|.+ ++. +|++|+.||.|++||++++
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP--QNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET--TEEEEEEEEETTSEEEEEEEECC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC--CCCcEEEEEeCCCcEEEeecCCC
Confidence 4 57899999999999999998776555444 8999999999964 445 8999999999999999864
No 95
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=236.74 Aligned_cols=211 Identities=8% Similarity=0.020 Sum_probs=168.6
Q ss_pred CCCceEEEEEccCC---------CeEEEE-------------------EecCeEEEEEcCCCCeE----EEEEecCcCeE
Q psy4653 14 RSDRVKCCDLHPTE---------PWMLAS-------------------LYNGHVHVWNHETNQNV----KSFEVCDLPVR 61 (229)
Q Consensus 14 ~~~~v~~~~~~p~~---------~~l~~~-------------------~~dg~v~~wd~~~~~~~----~~~~~~~~~v~ 61 (229)
+...|.+++|+|++ ++||+| +.|++|+|||+.+++.. ..+..+...|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 46688899999886 566664 46789999999887652 23455667899
Q ss_pred EEEEcCC------CCEEEEEeCCCeEEEEECCCcce-----------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEE
Q psy4653 62 AAKFVPR------KNWIVTGSDDMQVCVFNYNTLER-----------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124 (229)
Q Consensus 62 ~~~~~~~------~~~l~sg~~d~~i~iwd~~~~~~-----------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~ 124 (229)
++.|+|+ +++||+|+.||.|++||+..++. ...+.+|...|.+++|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 9999996 57999999999999999976531 2367789999999999986 4899999999999
Q ss_pred EEecCCceeeeeeeecceeeEEEE--EEcCCCC-CEEEEEECCCcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCc
Q psy4653 125 LWNWEKAWACQQVFEGHTHYVMQI--VINPKDN-NTFASASLDRTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDK 199 (229)
Q Consensus 125 lwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~ 199 (229)
+||++....+...+.+|..+|.++ .++| ++ .+|+||+.|++|++||+++.++...+.+|.. .+.+++|++ ++
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp--~~ 367 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP--QI 367 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET--TT
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC--Cc
Confidence 999986644556678999999999 3454 55 7999999999999999998877777777754 478899964 45
Q ss_pred CEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 200 PYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 200 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
..+++++.|++|++||++++.++.++..|
T Consensus 368 ~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 368 YSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp TEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred CeEEEeCCCCcEEEEECcccccceeeecC
Confidence 57999999999999999999887777654
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.6e-32 Score=224.43 Aligned_cols=209 Identities=25% Similarity=0.451 Sum_probs=184.8
Q ss_pred hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
+....+.+|..+|.+++| ++..+++|+.||.|++||+.+++.+..+..+...+.++.|+ ++.|++|+.||.|++||
T Consensus 164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD 239 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEE
T ss_pred eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEe
Confidence 345568899999999999 78899999999999999999999999999899999999997 46999999999999999
Q ss_pred CCCcceE---EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 86 YNTLERF---HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 86 ~~~~~~~---~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
+++++.. ..+.+|...|.+++| ++.++++++.|+.|++||++.. .....+.+|...+.++.++ +.++++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~~g~ 313 (435)
T 1p22_A 240 MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR---DRLVVSGS 313 (435)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE---TTEEEEEE
T ss_pred CCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEeC---CCEEEEEe
Confidence 9877654 667889999999999 6789999999999999999876 4566678899999999884 57999999
Q ss_pred CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe---------EEEeeccC
Q psy4653 163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---------CVQTLESG 228 (229)
Q Consensus 163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---------~~~~~~~~ 228 (229)
.|+.|++||+++++++..+.+|...+.+++| ++.+|++|+.||.|++||+++++ ++.++..|
T Consensus 314 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h 384 (435)
T 1p22_A 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 384 (435)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe----cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence 9999999999999999999999999999998 45589999999999999997765 77777654
No 97
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.2e-32 Score=215.55 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=153.2
Q ss_pred CceEEEEEccC----CCeEEEEEe--------------------cCeEEEEEc-CCCCeEEEEEecCcCeEEEEEcC---
Q psy4653 16 DRVKCCDLHPT----EPWMLASLY--------------------NGHVHVWNH-ETNQNVKSFEVCDLPVRAAKFVP--- 67 (229)
Q Consensus 16 ~~v~~~~~~p~----~~~l~~~~~--------------------dg~v~~wd~-~~~~~~~~~~~~~~~v~~~~~~~--- 67 (229)
..|.+++|+|+ ++.+++++. |+.|++|++ .+++.+..+..+...+..+.|++
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 36778888888 888887664 889999999 44788888888888888999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEeccCC---CceeEEEEcCCCCEE------------EEEeCCCcEEEEecCCce
Q psy4653 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS---DYVRCVAVHPTQPFL------------LTSSDDMLIKLWNWEKAW 132 (229)
Q Consensus 68 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~---~~i~~v~~~~~~~~~------------~s~~~d~~v~lwd~~~~~ 132 (229)
++.+|++|+.|+.|+|||+++++.++.+.+|. ..+.+++|+|++.++ ++|+.|++|++||..++.
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 67899999999999999999999999998654 467788999999876 568899999999998764
Q ss_pred eeeeee-----ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceE-EEEEEeCCCcCEEEEee
Q psy4653 133 ACQQVF-----EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN-CVDYYHGGDKPYLISGA 206 (229)
Q Consensus 133 ~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s 206 (229)
.. .++ .+|...+....++ +.++++|+.|++|++||+.+++.+.++.+|...+. +++|+ +++++|+||+
T Consensus 272 ~l-~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS--PDG~~LaSGS 345 (356)
T 2w18_A 272 SV-GVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS--GTDSHLLAGQ 345 (356)
T ss_dssp EE-EEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC--SSSSEEEEEC
T ss_pred EE-EEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC--CCCCEEEEEE
Confidence 33 222 3665554444332 56899999999999999999999999999987665 58884 5677999999
Q ss_pred CCCeEEEEECC
Q psy4653 207 DDRLVKIWDYQ 217 (229)
Q Consensus 207 ~d~~i~iwd~~ 217 (229)
.|++|+|||+.
T Consensus 346 ~D~TIklWd~~ 356 (356)
T 2w18_A 346 KDGNIFVYHYS 356 (356)
T ss_dssp TTSCEEEEEEC
T ss_pred CCCcEEEecCC
Confidence 99999999963
No 98
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=210.25 Aligned_cols=209 Identities=21% Similarity=0.265 Sum_probs=182.0
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC---CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN---QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
...+.+|..+|.+++|+|+++.+++++.||.|++|++... +.+..+..+...+.++.| ++++|++|+.|+.|++|
T Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW 129 (313)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence 4456789999999999999999999999999999998764 556677778889999999 57899999999999999
Q ss_pred ECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEEE
Q psy4653 85 NYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 85 d~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
| ..+....+..|...+.++.|+| ++.++++++.|+.|++||.. .....+.. |...+..+.++| ++. +++++
T Consensus 130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~ 202 (313)
T 3odt_A 130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVD-DGH-FISCS 202 (313)
T ss_dssp E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEE-TTE-EEEEE
T ss_pred c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcC-CCe-EEEcc
Confidence 9 5677788889999999999988 88999999999999999943 23444555 888899999998 444 99999
Q ss_pred CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
.|+.|++||+++++++..+.+|...+.+++|.+ ++ .|++++.||.|++||+++++++.++..+
T Consensus 203 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 265 (313)
T 3odt_A 203 NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP--NG-DIVSCGEDRTVRIWSKENGSLKQVITLP 265 (313)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECT--TS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred CCCeEEEEECCchhhhhhhhcCCceEEEEEEec--CC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence 999999999999999999999999999999954 43 5899999999999999999998888765
No 99
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.4e-32 Score=231.63 Aligned_cols=209 Identities=14% Similarity=0.158 Sum_probs=187.4
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC----CeEEEEEecCcC-eEEEEEcC--CCCEEEEEeCCCeEEE
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN----QNVKSFEVCDLP-VRAAKFVP--RKNWIVTGSDDMQVCV 83 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~sg~~d~~i~i 83 (229)
-..|...|.+++|+|++++|++++ ++.|.+||+.++ +....+..|... |.++.|+| ++++|++|+.||.|++
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 346889999999999999999988 899999999998 888899889999 99999999 9999999999999999
Q ss_pred EECCCc--------ceEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653 84 FNYNTL--------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQVFEGHTHYVMQIVIN 151 (229)
Q Consensus 84 wd~~~~--------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (229)
||+.++ +.+..+..|...|.+++|+|+++++++++.+ +.|++||.. .....+.+|...|..+.|+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEEC
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEEEEEC
Confidence 999754 5667788899999999999999999999988 789999843 3456678899999999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCC---ceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK---GVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~---~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
|....++++++.|+.|++||+.+.+.+..+.+|.. .+.+++|.+ + +.+|++++.|+.|++||+++++.+..+
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 95444899999999999999999988999999998 899999954 4 668999999999999999999999888
No 100
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.9e-31 Score=209.43 Aligned_cols=215 Identities=25% Similarity=0.466 Sum_probs=186.5
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
..+.+.+|...|.+++|+|++++|++++.|+.|++|+............+...+....+.+.+++|++|+.|+.+++||.
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 34568899999999999999999999999999999999999888888778888999999999999999999999999998
Q ss_pred CCcce-EEEeccCCCceeEEEEcCCC--CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 87 NTLER-FHSFEAHSDYVRCVAVHPTQ--PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 87 ~~~~~-~~~~~~h~~~i~~v~~~~~~--~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
..... .....+|...+.+++|++++ .++++++.|+.|++||++.. .....+.+|..+|.++.|+| ++.+|++|+.
T Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~ 235 (340)
T 4aow_A 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSP-DGSLCASGGK 235 (340)
T ss_dssp TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECC-CCCEEEEEeC
Confidence 76543 44567889999999999865 46889999999999999876 45666788999999999998 6889999999
Q ss_pred CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
|+.|++||+++.+++..+..+ ..+.++.|.+ ++ .+++++.|+.|++||++++.++.++..
T Consensus 236 Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYTLDGG-DIINALCFSP--NR-YWLCAATGPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp TCEEEEEETTTTEEEEEEECS-SCEEEEEECS--SS-SEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred CCeEEEEEeccCceeeeecCC-ceEEeeecCC--CC-ceeeccCCCEEEEEECCCCeEEEeccc
Confidence 999999999999888888765 4688888853 33 477788899999999999988877653
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.2e-31 Score=219.11 Aligned_cols=208 Identities=26% Similarity=0.491 Sum_probs=187.2
Q ss_pred hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
+..+.+.+|...|.+++|+ ++.+++|+.||.|++||+.+++.+..+..|...|.++.|+ ++.|++|+.||.|++||
T Consensus 150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd 225 (445)
T 2ovr_B 150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD 225 (445)
T ss_dssp CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEE
Confidence 3455688999999999998 5689999999999999999999999999899999999996 57899999999999999
Q ss_pred CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653 86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR 165 (229)
Q Consensus 86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 165 (229)
+++++.+..+.+|...|.++.| ++.++++++.|+.|++||++.. .....+.+|...+.++.+ ++.++++|+.|+
T Consensus 226 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~ 299 (445)
T 2ovr_B 226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDT 299 (445)
T ss_dssp SSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE---CSSEEEEEETTS
T ss_pred CCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE---CCCEEEEEeCCC
Confidence 9999999999999999999999 6789999999999999999876 455667789999999998 467999999999
Q ss_pred cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
.|++||+++++++..+.+|...+.++.+. +.+|++|+.||.|++||+++++++.++..
T Consensus 300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred eEEEEECCCCCEEEEEcCCcccEEEEEEe----CCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 99999999999999999999989888872 34899999999999999999999988875
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.9e-31 Score=206.93 Aligned_cols=205 Identities=14% Similarity=0.252 Sum_probs=168.2
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL- 89 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~- 89 (229)
+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...+.++. ++++.|++|+.++.+.+|+....
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCc
Confidence 457888999999999999999999999999999999999999988887776654 45689999999999999998765
Q ss_pred ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee---eeeee---------------------------
Q psy4653 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC---QQVFE--------------------------- 139 (229)
Q Consensus 90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~---~~~~~--------------------------- 139 (229)
..+..+.+|...+.++.+++++.++++++.|+.|++||++..... .....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 456778899999999999999999999999999999998643210 00001
Q ss_pred -----------------cceeeEEEEEEcCCCCCEEEEE--ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC
Q psy4653 140 -----------------GHTHYVMQIVINPKDNNTFASA--SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200 (229)
Q Consensus 140 -----------------~~~~~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 200 (229)
.+...+..+.+.|. +..++++ +.|+.|++||+++++++.++.+|...|.+++|. +++.
T Consensus 221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s--pdg~ 297 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS--PDGA 297 (318)
T ss_dssp CEEEEEETTTCCEEEEEECSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSS
T ss_pred CEEEEEecccccccccccceeeeeeeeeccc-ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCC
Confidence 11223455566663 4555544 489999999999999999999999999999995 4667
Q ss_pred EEEEeeCCCeEEEEECCCCe
Q psy4653 201 YLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 201 ~l~s~s~d~~i~iwd~~~~~ 220 (229)
+|+||+.||+|+|||+....
T Consensus 298 ~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEETTTEEEEECCSCCC
T ss_pred EEEEEecCCeEEEEECCCCC
Confidence 89999999999999997653
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.1e-32 Score=225.58 Aligned_cols=213 Identities=16% Similarity=0.200 Sum_probs=168.7
Q ss_pred hcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 10 KLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
.+.+|..+|.+++|+| ++..|++++.||+|++||++++........+ ...+.++.|+|++++|++|+.||.|++||+
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 4678999999999998 5789999999999999999876543333222 345789999999999999999999999998
Q ss_pred CCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 87 NTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
+. +.+..+.+|...|.+++|+|++. ++++++.|+.|++||++..... .....+|...|.++.|+| ++.+|++++.
T Consensus 239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~ 316 (435)
T 4e54_B 239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQ 316 (435)
T ss_dssp SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEES
T ss_pred Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcC
Confidence 64 56678889999999999999887 6789999999999999765332 223357889999999998 7899999999
Q ss_pred CCcEEEEeCCCCCceEEEecCCCc------eEEEEEEeCCCcCEEEEee------------CCCeEEEEECCCCeEEEee
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHEKG------VNCVDYYHGGDKPYLISGA------------DDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~ 225 (229)
|+.|++||+.++.....+..|... +....| .++..++++++ .++.|++||..+++++.++
T Consensus 317 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 317 KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW--HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE--CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred CCEEEEEECCCCccceEEecccccccccceeEEEEE--cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 999999999988877777665421 112233 22333344332 4568999999999998876
Q ss_pred c
Q psy4653 226 E 226 (229)
Q Consensus 226 ~ 226 (229)
.
T Consensus 395 ~ 395 (435)
T 4e54_B 395 Y 395 (435)
T ss_dssp C
T ss_pred e
Confidence 5
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.4e-31 Score=214.05 Aligned_cols=203 Identities=13% Similarity=0.154 Sum_probs=163.2
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT 88 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~ 88 (229)
.+.+|..+|.+++|+|++++|++|+.+ .+++||+.+++...... ...+..+.+.++++.+ ++|+.|+.|++||..+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 457899999999999999988888765 57899999876654433 2357888899988876 6788889999999999
Q ss_pred cceEEEeccCCCceeEEEEcCCC-----------------------------------CEEEE--EeCCCcEEEEecCCc
Q psy4653 89 LERFHSFEAHSDYVRCVAVHPTQ-----------------------------------PFLLT--SSDDMLIKLWNWEKA 131 (229)
Q Consensus 89 ~~~~~~~~~h~~~i~~v~~~~~~-----------------------------------~~~~s--~~~d~~v~lwd~~~~ 131 (229)
++.+..+. +...|.+++|+++. .+++. |+.||.|++||+...
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence 98888776 66688888888752 23333 578899999998764
Q ss_pred e--------------e-eeeeeecceeeEEEEEEcCCCCCEEEEEECCCc-EEEEeCCCCCceEEEe-c-CCCceEEEEE
Q psy4653 132 W--------------A-CQQVFEGHTHYVMQIVINPKDNNTFASASLDRT-VKVWQLGSASPNFTLE-G-HEKGVNCVDY 193 (229)
Q Consensus 132 ~--------------~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~-~-h~~~v~~~~~ 193 (229)
. . ....+.+|...|.++.|+| ++.+|++|+.|++ |++||+++++++..+. + |...|.+++|
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred CccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence 3 0 1566789999999999999 7899999999998 9999999999999998 5 9999999999
Q ss_pred EeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 194 YHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 194 ~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
. +++.+|++++.|++|++||++.+
T Consensus 249 s--~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 249 S--TDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp C--TTSCEEEEEETTCEEEEEESSCC
T ss_pred C--CCCCEEEEEECCCEEEEEEccCC
Confidence 5 46679999999999999999765
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.6e-31 Score=212.84 Aligned_cols=165 Identities=8% Similarity=0.070 Sum_probs=134.8
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-ee
Q psy4653 59 PVRAAKFVPRKNWIVTG--SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQ 135 (229)
Q Consensus 59 ~v~~~~~~~~~~~l~sg--~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~ 135 (229)
.+.+++|+|+|++|+++ +.|+.|+|||+++++.+..++ |...|.+++|+|+++++++++.++ +.+|+...+.. ..
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIAR 212 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceee
Confidence 36789999999987654 478999999999999888876 778899999999999999998665 55555544433 34
Q ss_pred eeeecceeeEEEEEEcCCCCCEEEEEECCC----cEEEEeCCCCCc----eEEEecCCCceEEEEEEeCCCcCEEEEeeC
Q psy4653 136 QVFEGHTHYVMQIVINPKDNNTFASASLDR----TVKVWQLGSASP----NFTLEGHEKGVNCVDYYHGGDKPYLISGAD 207 (229)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 207 (229)
....+|...+..+.|+| ++.++++++.|+ .+++|++..... ...+.+|...|.+++|+ +++++|++|+.
T Consensus 213 ~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S--pdg~~lasgs~ 289 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD--MKGELAVLASN 289 (365)
T ss_dssp ECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC--TTSCEEEEEET
T ss_pred eecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC--CCCCceEEEcC
Confidence 45567888999999998 688999999887 688898866532 34677899999999994 56779999999
Q ss_pred CCeEEEEECCCCeEEEee-ccC
Q psy4653 208 DRLVKIWDYQNKTCVQTL-ESG 228 (229)
Q Consensus 208 d~~i~iwd~~~~~~~~~~-~~~ 228 (229)
|++|+|||++++++++++ ++|
T Consensus 290 D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTSS
T ss_pred CCEEEEEECCCCcEEEEecCcc
Confidence 999999999999999885 555
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-32 Score=237.33 Aligned_cols=212 Identities=20% Similarity=0.328 Sum_probs=181.4
Q ss_pred hhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCC
Q psy4653 6 DIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDM 79 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~ 79 (229)
+....+.+|..+|.+++|+|+ ++.+++|+.||.|++||+.+++ .+..+..+...|.++.|+|+ ++.+++|+.||
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 345568899999999999998 9999999999999999999987 56677778889999999999 99999999999
Q ss_pred eEEEEECCCcc--eEEEeccCCCceeEEEEcC-------------CCCEEEEEeCCCcEEEEecCCce---eeeeeeecc
Q psy4653 80 QVCVFNYNTLE--RFHSFEAHSDYVRCVAVHP-------------TQPFLLTSSDDMLIKLWNWEKAW---ACQQVFEGH 141 (229)
Q Consensus 80 ~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~-------------~~~~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~ 141 (229)
.|++||+.+.. ....+.+|...|.+++|+| ++.++++++.||.|++||++... .+...+.+|
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 99999998763 3455678999999999999 58899999999999999987643 345567789
Q ss_pred eeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCCC-----ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653 142 THYVMQIVINPKD--NNTFASASLDRTVKVWQLGSAS-----PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214 (229)
Q Consensus 142 ~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iw 214 (229)
..+|.++.|+|.. +.++++|+.|+.|++||+..+. .......|...+.+++|. +++.+|++|+.||.|++|
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~~l~s~s~Dg~I~vw 281 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDNKVTLW 281 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC--TTTCCEEEECSSSCEECC
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc--CCCCEEEEEcCCCEEEEE
Confidence 9999999999943 7899999999999999998763 233345577889999995 456689999999999999
Q ss_pred ECCCC
Q psy4653 215 DYQNK 219 (229)
Q Consensus 215 d~~~~ 219 (229)
|++++
T Consensus 282 d~~~~ 286 (753)
T 3jro_A 282 KENLE 286 (753)
T ss_dssp BCCSS
T ss_pred ecCCC
Confidence 99853
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-30 Score=212.31 Aligned_cols=205 Identities=18% Similarity=0.338 Sum_probs=175.7
Q ss_pred eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
++.|+|++++ .|++ +.|++|+|||+.+++....+.. +...|.+++|+|+|++|++|+.||.|++||+++++.+..+
T Consensus 108 ~~~l~wS~~n-~lAv-gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 4679999764 5554 4599999999999998887764 4567999999999999999999999999999999999999
Q ss_pred ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175 (229)
Q Consensus 96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 175 (229)
.+|...+.++.++ +.++++++.|+.+++||..........+.+|...+..+.++| ++.++++++.|+.+++|+...+
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCC
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccc
Confidence 9999999998875 479999999999999999877666777889999999999998 6889999999999999999765
Q ss_pred C----ceEEEecCCCceEEEEEEeCCCcCEEEE--eeCCCeEEEEECCCCeEEEeeccC
Q psy4653 176 S----PNFTLEGHEKGVNCVDYYHGGDKPYLIS--GADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 176 ~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+ .+.....|...|.+++|.+.. ..++++ |+.|++|++||+++++++..+..+
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~ 320 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTTEEEEEEECS
T ss_pred cccceeeeeecccCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCccccceeeccc
Confidence 4 355677888999999997543 346655 568999999999999998887654
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=216.48 Aligned_cols=197 Identities=12% Similarity=0.111 Sum_probs=162.2
Q ss_pred EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC---------Ccce
Q psy4653 21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN---------TLER 91 (229)
Q Consensus 21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~---------~~~~ 91 (229)
..+.+++..+++|+.||.|++||+.+++.+..+. ...+.++.|+|. +++|+.|+.|++|+.+ +++.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455788899999999999999999999888776 356788888887 9999999999999765 4443
Q ss_pred EEEec-cCCCceeEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653 92 FHSFE-AHSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168 (229)
Q Consensus 92 ~~~~~-~h~~~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 168 (229)
+..+. .|.+.|.+++|+| ++.++++++.|++|++||++...........+...+.++.|+| ++.+|++|+.|+.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEE
Confidence 44443 5678899999999 9999999999999999999877543222234555799999998 789999999999999
Q ss_pred EEeCCCCCce-EEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 169 VWQLGSASPN-FTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 169 ~wd~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+||+++++.. ..+.. |...|.+++|. +++.+|++++. +.|++||+++++++.+++
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs--~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFA--DNGYWMVVECD-QTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEEC--TTSSEEEEEES-SBEEEEETTSSTTCBSSC
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEe--CCCCEEEEEeC-CeEEEEEcCCCCcceeec
Confidence 9999998877 77887 99999999995 46678999995 599999999987765544
No 109
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-30 Score=239.99 Aligned_cols=209 Identities=20% Similarity=0.383 Sum_probs=186.6
Q ss_pred hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q psy4653 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iw 84 (229)
....+.+|...|.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.++.|+| ++.++++|+.|+.|++|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999 45689999999999999
Q ss_pred ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee----------------------------
Q psy4653 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ---------------------------- 136 (229)
Q Consensus 85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~---------------------------- 136 (229)
|+++++.+..+.+|.+.|.+++|+|+++++++++.|+.|++||+........
T Consensus 729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 9999999999999999999999999999999999999999999865422111
Q ss_pred --------------------------eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEE
Q psy4653 137 --------------------------VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190 (229)
Q Consensus 137 --------------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~ 190 (229)
...+|...+..+.|+| ++.++++++.|+.|++||+.++..+..+.+|...|.+
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 887 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 887 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence 1125667788899998 6889999999999999999999999999999999999
Q ss_pred EEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 191 VDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 191 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
++|. +++.+|++++.||.|++||+.+
T Consensus 888 v~~s--pdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 888 VMFS--PDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEC--TTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEC--CCCCEEEEEeCCCeEEEEEccc
Confidence 9995 4667899999999999999753
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.4e-30 Score=201.63 Aligned_cols=205 Identities=19% Similarity=0.283 Sum_probs=164.8
Q ss_pred eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
+++++|||++ . +|++.|++|+|||+++++.+..+.. |...|.++.|+|++++|++|+.||.|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~-lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-V-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-E-EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-E-EEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4789999886 4 4555699999999999999887764 4567999999999999999999999999999999999999
Q ss_pred ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175 (229)
Q Consensus 96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 175 (229)
.+|...+.++.+ ++..+++++.++.+++|+..........+.+|...+..+.+.+ ++.++++++.|+.|++||++++
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCB
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCC
Confidence 999988877655 4578999999999999999877677777889999999999987 6789999999999999998764
Q ss_pred Cc----eEEEecC--------------------------------------------CCceEEEEEEeCCCcCEEEE--e
Q psy4653 176 SP----NFTLEGH--------------------------------------------EKGVNCVDYYHGGDKPYLIS--G 205 (229)
Q Consensus 176 ~~----~~~~~~h--------------------------------------------~~~v~~~~~~~~~~~~~l~s--~ 205 (229)
+. ......| ...+..+.|.+. ...+++ |
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~sg 260 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH--YKELISGHG 260 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT--TTEEEEEEC
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc--ccceEEEEE
Confidence 31 1111112 222344444332 233443 4
Q ss_pred eCCCeEEEEECCCCeEEEeeccCC
Q psy4653 206 ADDRLVKIWDYQNKTCVQTLESGI 229 (229)
Q Consensus 206 s~d~~i~iwd~~~~~~~~~~~~~~ 229 (229)
+.|+.|++||+++++++.++++|.
T Consensus 261 ~~d~~i~iwd~~~~~~~~~l~gH~ 284 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKVAELKGHT 284 (318)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCS
T ss_pred cCCCEEEEEECCCCcEEEEEcCCC
Confidence 589999999999999999998763
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.9e-31 Score=215.98 Aligned_cols=201 Identities=22% Similarity=0.294 Sum_probs=171.6
Q ss_pred ceEEEEEccCCCeEEE-EEecCeEEEEEcCCC----CeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCc-
Q psy4653 17 RVKCCDLHPTEPWMLA-SLYNGHVHVWNHETN----QNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNTL- 89 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~- 89 (229)
....++++|+...+++ ++.||.|++||+.+. +....+..|...|.++.|+| ++++|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4556889998876665 678999999999664 23445667888999999999 8999999999999999999887
Q ss_pred ------ceEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEE
Q psy4653 90 ------ERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 90 ------~~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s 160 (229)
+.+..+.+|...|.+++|+|++ .++++++.|+.|++||++.... ...+ .+|...|.++.|+| ++.+|++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 193 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSR-DGALICT 193 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECC-CCCEEEE
Confidence 5677888999999999999998 6999999999999999987743 4455 67999999999998 7889999
Q ss_pred EECCCcEEEEeCCCCCceEEE-ecCCCc-eEEEEEEeCCCcCEEEEe---eCCCeEEEEECCCCeE
Q psy4653 161 ASLDRTVKVWQLGSASPNFTL-EGHEKG-VNCVDYYHGGDKPYLISG---ADDRLVKIWDYQNKTC 221 (229)
Q Consensus 161 ~~~d~~i~~wd~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~~~l~s~---s~d~~i~iwd~~~~~~ 221 (229)
++.|+.|++||+++++.+..+ .+|... +.++.|. +++.+|++| +.|+.|++||+++++.
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV--SEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC--STTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc--CCCcEEEEeccCCCCceEEEEcCccccC
Confidence 999999999999999888888 688765 7888885 456688888 7999999999988653
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=4.4e-31 Score=216.15 Aligned_cols=205 Identities=10% Similarity=0.034 Sum_probs=155.4
Q ss_pred hhhcccCCCceEEEEEcc--------CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCC
Q psy4653 8 KRKLTARSDRVKCCDLHP--------TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDD 78 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p--------~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d 78 (229)
...+.||++.|++++|+| ++++|++++.|++|+|||++++..+..+..+..++.++.|+|++ ++|++|+.|
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence 456889999999999998 78899999999999999999988888888888899999999987 489999999
Q ss_pred CeEEEEECCCcceEEE-------------------------eccCCCceeEEEEc-CCCCEEEEEeCCCcEEEEecCCce
Q psy4653 79 MQVCVFNYNTLERFHS-------------------------FEAHSDYVRCVAVH-PTQPFLLTSSDDMLIKLWNWEKAW 132 (229)
Q Consensus 79 ~~i~iwd~~~~~~~~~-------------------------~~~h~~~i~~v~~~-~~~~~~~s~~~d~~v~lwd~~~~~ 132 (229)
+.|++||+.+++.... ..+|...+.++.|+ |++..+++++.|+++++||+....
T Consensus 209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence 9999999987643221 23567788899987 799999999999999999986543
Q ss_pred eeeeeeecceeeEE------------------EEEEcCC-CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEE
Q psy4653 133 ACQQVFEGHTHYVM------------------QIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193 (229)
Q Consensus 133 ~~~~~~~~~~~~v~------------------~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 193 (229)
. ...+..|...+. ...++|. ++.++++|+.|++|++||..++.+.....+|..+|.+++|
T Consensus 289 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf 367 (393)
T 4gq1_A 289 D-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW 367 (393)
T ss_dssp ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred C-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence 2 222222322222 2223333 3445677889999999999999888888889899999999
Q ss_pred EeCCCcCEEEEeeCCCeEEEEEC
Q psy4653 194 YHGGDKPYLISGADDRLVKIWDY 216 (229)
Q Consensus 194 ~~~~~~~~l~s~s~d~~i~iwd~ 216 (229)
+ +++++|++++.|| +.+|.+
T Consensus 368 s--pdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 368 H--QDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp C--TTSSEEEEEESSE-EEEEEE
T ss_pred c--CCCCEEEEEeCCC-eEEEEE
Confidence 4 5677999998876 555544
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=209.73 Aligned_cols=204 Identities=14% Similarity=0.205 Sum_probs=168.8
Q ss_pred hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEE--cCCCCEEEEEeCCCeEEEEEC
Q psy4653 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF--VPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg~~d~~i~iwd~ 86 (229)
..+.+|..+|.+++|+|+++.|++++.||.|++||+++++.+. +..+..++.++.| +|++++|++|+.|+.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 5678999999999999999999999999999999999988766 4568889999999 889999999999999999999
Q ss_pred CCcceEEEeccCC-----------------------------------------CceeEEEEcCCCCE----EEEEeCCC
Q psy4653 87 NTLERFHSFEAHS-----------------------------------------DYVRCVAVHPTQPF----LLTSSDDM 121 (229)
Q Consensus 87 ~~~~~~~~~~~h~-----------------------------------------~~i~~v~~~~~~~~----~~s~~~d~ 121 (229)
++++.+..+..+. ..+.++.+.++... +++++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 238 (368)
T 3mmy_A 159 RSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG 238 (368)
T ss_dssp SCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred CCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence 8877655554332 23445555544443 99999999
Q ss_pred cEEEEecCCce--eeeeeeeccee------------eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCc
Q psy4653 122 LIKLWNWEKAW--ACQQVFEGHTH------------YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187 (229)
Q Consensus 122 ~v~lwd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~ 187 (229)
.|++||++... .....+.+|.. +|.++.|+| ++.+|++|+.|+.|++||+.+++++..+.+|...
T Consensus 239 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 317 (368)
T 3mmy_A 239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP 317 (368)
T ss_dssp EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC
T ss_pred cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC
Confidence 99999997653 23455666665 799999998 6789999999999999999999999999999999
Q ss_pred eEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653 188 VNCVDYYHGGDKPYLISGADDRLVKIWDY 216 (229)
Q Consensus 188 v~~~~~~~~~~~~~l~s~s~d~~i~iwd~ 216 (229)
+.+++|. +++.+|++|+.|+..+.|++
T Consensus 318 v~~~~~s--~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 318 ISACCFN--HNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEEEC--TTSSCEEEEECCCSTTCGGG
T ss_pred ceEEEEC--CCCCeEEEEecccccccccc
Confidence 9999994 46678999998876554443
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.1e-31 Score=238.21 Aligned_cols=215 Identities=10% Similarity=0.062 Sum_probs=171.2
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE--EEEE---------ecCcCeEEEEEcCCCCEEEEEeCC
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV--KSFE---------VCDLPVRAAKFVPRKNWIVTGSDD 78 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~---------~~~~~v~~~~~~~~~~~l~sg~~d 78 (229)
.+.||...|.+++|+|+++.|++|+.|++|++||+.++... ..+. .|...|.+++|+|++++||+|+.|
T Consensus 430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D 509 (902)
T 2oaj_A 430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET 509 (902)
T ss_dssp SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence 46778888888889999999999999999999999987532 1122 466789999999999999999999
Q ss_pred CeEEEEECCCcc---------------------------------------------eEEEeccCCCceeEEEEcCCCCE
Q psy4653 79 MQVCVFNYNTLE---------------------------------------------RFHSFEAHSDYVRCVAVHPTQPF 113 (229)
Q Consensus 79 ~~i~iwd~~~~~---------------------------------------------~~~~~~~h~~~i~~v~~~~~~~~ 113 (229)
|.|++||+++++ ++..+.+|.+.|++|+|+|+| +
T Consensus 510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~ 588 (902)
T 2oaj_A 510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F 588 (902)
T ss_dssp SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence 999999987552 356778899999999999999 9
Q ss_pred EEEEeCCCcEEEEecCCceeee----eeee-cceeeEEEEEEc-----CCC--CCEEEEEECCCcEEEEeC---CCCCce
Q psy4653 114 LLTSSDDMLIKLWNWEKAWACQ----QVFE-GHTHYVMQIVIN-----PKD--NNTFASASLDRTVKVWQL---GSASPN 178 (229)
Q Consensus 114 ~~s~~~d~~v~lwd~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~--~~~l~s~~~d~~i~~wd~---~~~~~~ 178 (229)
+++|+.|++|+|||++...... ..+. +|...|++++|+ |+. +.+|++|+.|++|++||+ .+++.+
T Consensus 589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence 9999999999999997654322 2233 889999999999 732 479999999999999999 677777
Q ss_pred EEEecC-----CCceEEEE-EEeC--------------------CCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 179 FTLEGH-----EKGVNCVD-YYHG--------------------GDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 179 ~~~~~h-----~~~v~~~~-~~~~--------------------~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
..+.+| ...|..++ |... .++ +++.++ +..||||+..+++++++...
T Consensus 669 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~l~~~-~~~ir~~~~~~~k~~~k~~~ 741 (902)
T 2oaj_A 669 VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPG-IVLITG-FDDIRLITLGKSKSTHKGFK 741 (902)
T ss_dssp EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCE-EEEEEC-SSEEEEECTTCCCEEEEECS
T ss_pred EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCe-EEEEEe-ccceEEEeCccccceeeEcc
Confidence 777666 35666666 4300 233 333333 77999999999999887643
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-30 Score=209.66 Aligned_cols=197 Identities=11% Similarity=0.122 Sum_probs=159.0
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcC---------CCCeEEEEE-ecCcCeEEEEEcC--CCCEEEEEeCCCeEEE
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHE---------TNQNVKSFE-VCDLPVRAAKFVP--RKNWIVTGSDDMQVCV 83 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~sg~~d~~i~i 83 (229)
..|.++.|+|+ +++++.|+.|++|+.. +++.+..+. .+..+|.++.|+| ++++|++|+.||.|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 56788889988 9999999999999665 555455544 4556899999999 9999999999999999
Q ss_pred EECCCcceEEEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEE
Q psy4653 84 FNYNTLERFHSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASA 161 (229)
Q Consensus 84 wd~~~~~~~~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~ 161 (229)
||+++++.+..... |...|.+++|+|++.++++|+.|+.|++||++........+.+ |..+|.++.|+| ++.+|+++
T Consensus 154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~ 232 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVE 232 (343)
T ss_dssp EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEE
T ss_pred EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEE
Confidence 99999888766543 4558999999999999999999999999999887555356676 999999999998 68899999
Q ss_pred ECCCcEEEEeCCCCCceEEEec---CCCceE--EEEEEeCCCcCEEEEeeC-CCeEEEEECCCC
Q psy4653 162 SLDRTVKVWQLGSASPNFTLEG---HEKGVN--CVDYYHGGDKPYLISGAD-DRLVKIWDYQNK 219 (229)
Q Consensus 162 ~~d~~i~~wd~~~~~~~~~~~~---h~~~v~--~~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~ 219 (229)
+ |+.|++||++..+....+.. |...+. +++| ++++.+|++++. |+.|++|++.+.
T Consensus 233 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 233 C-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI--DDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp E-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE--CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred e-CCeEEEEEcCCCCcceeecccccccccccceEEEE--CCCCCEEEEecCCCCcEEEEEEccc
Confidence 9 44999999998876655443 333343 5777 456779999998 999999999654
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.8e-31 Score=219.01 Aligned_cols=195 Identities=13% Similarity=0.171 Sum_probs=162.8
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc-----CeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL-----PVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.|.+.|.+++|+|+|..|++++.||.|++||..+ ++..+. ++. .+.+++|+|+|++|++|+.||+|++||++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 4588999999999999999999999999999655 555555 554 49999999999999999999999999998
Q ss_pred Ccc-------eEEEe----ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee--eeeee-ecceeeEEEEEEcCC
Q psy4653 88 TLE-------RFHSF----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA--CQQVF-EGHTHYVMQIVINPK 153 (229)
Q Consensus 88 ~~~-------~~~~~----~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~--~~~~~-~~~~~~v~~~~~~~~ 153 (229)
+++ .+..+ .+|.+.|.+++|+|++ +++++.|++|++||+..+.. ..+.+ .+|...|..++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 875 25665 6778899999999999 88899999999999977642 12334 4788889999997
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217 (229)
Q Consensus 154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~ 217 (229)
+..+|+++ +++|++||+..++......+|...+..++|.+++++..|++++.||+ ++|..+
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 47888887 69999999987765333338999999999844456678999999999 999987
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=7.4e-32 Score=220.74 Aligned_cols=214 Identities=8% Similarity=0.042 Sum_probs=150.8
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE-----EEEecCcCeEEEEEcC--------CCCEEEEEeCCCe
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK-----SFEVCDLPVRAAKFVP--------RKNWIVTGSDDMQ 80 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~sg~~d~~ 80 (229)
|...+....++|++..+++++.|++|++||+++++... .+..|...|.++.|+| ++++||+|+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 33344444556667789999999999999999886543 2456888999999998 7889999999999
Q ss_pred EEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeee-----------------------
Q psy4653 81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQ----------------------- 136 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~----------------------- 136 (229)
|+|||++++..+..+..|...|.+++|+|++. ++++++.|++|++||+........
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 99999988888888888999999999999875 799999999999999876432211
Q ss_pred -eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEE------------------EEEeCC
Q psy4653 137 -VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV------------------DYYHGG 197 (229)
Q Consensus 137 -~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~------------------~~~~~~ 197 (229)
...+|...+..+.|.+.++..+++++.|+++++||+..+.....+..|...+..+ .+.+..
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 1135666777888876688999999999999999998766555554443333222 233334
Q ss_pred CcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 198 DKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 198 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
++.++++|+.||.|+|||+.+++++.++..
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 455788899999999999999877666543
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=217.90 Aligned_cols=196 Identities=13% Similarity=0.182 Sum_probs=158.1
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE-----------------------------EEEE-ecCcCeEE
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV-----------------------------KSFE-VCDLPVRA 62 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~-----------------------------~~~~-~~~~~v~~ 62 (229)
.....|.+++|+|||+.+++++.|++|+ |...++.+ ..+. .++..|.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~ 90 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV 90 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence 3457899999999999999999999996 54443321 1111 23567999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-----ceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee----
Q psy4653 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-----YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---- 133 (229)
Q Consensus 63 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-----~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---- 133 (229)
+.|+|+|+.||+++.||.+++||.+. .+..+. |.. .|.+++|||+++++++|+.||+|++||+..+..
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 99999999999999999999999654 666666 665 599999999999999999999999999987532
Q ss_pred --eeeee----ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc---eEEE-ecCCCceEEEEEEeCCCcCEEE
Q psy4653 134 --CQQVF----EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---NFTL-EGHEKGVNCVDYYHGGDKPYLI 203 (229)
Q Consensus 134 --~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~-~~h~~~v~~~~~~~~~~~~~l~ 203 (229)
....+ .+|...|.+++|+| ++ +++++.|+++++||+..... ..++ .+|...|.+++|. + ++|+
T Consensus 168 ~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g--~~LA 240 (588)
T 2j04_A 168 FYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D--YKVV 240 (588)
T ss_dssp CEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T--TEEE
T ss_pred ceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C--CEEE
Confidence 23444 67888999999998 55 88899999999999987763 3456 4788889999996 2 5788
Q ss_pred EeeCCCeEEEEECCCCeE
Q psy4653 204 SGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 204 s~s~d~~i~iwd~~~~~~ 221 (229)
+++ +++|++||+.+++.
T Consensus 241 Sa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp EEC-SSEEEEEETTTTEE
T ss_pred EEe-CCeEEEEECCCCeE
Confidence 887 69999999998877
No 119
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.7e-29 Score=198.59 Aligned_cols=198 Identities=16% Similarity=0.126 Sum_probs=169.8
Q ss_pred hhccc--CCCceEEEEEccCCCeEEEEEecCeEEEEEcCC---------CCeEEEEEecCcCeEEEEEcCCCCEEEEEeC
Q psy4653 9 RKLTA--RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET---------NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD 77 (229)
Q Consensus 9 ~~~~~--~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 77 (229)
..+.+ |..+|.+++|+| +..+++++.|+.|++||+++ ++.+..+. +...+.++.|+|++ +++++.
T Consensus 93 ~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~ 168 (342)
T 1yfq_A 93 QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMN 168 (342)
T ss_dssp EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEES
T ss_pred EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeC
Confidence 45677 999999999999 99999999999999999988 76666665 67789999999877 999999
Q ss_pred CCeEEEEECCC-cce--EEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCc-----eeeeeeeeccee-----
Q psy4653 78 DMQVCVFNYNT-LER--FHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKA-----WACQQVFEGHTH----- 143 (229)
Q Consensus 78 d~~i~iwd~~~-~~~--~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~-----~~~~~~~~~~~~----- 143 (229)
|+.|++||+++ +.. ......|...|.+++|+| ++.++++++.|+.|++|+++.. ......+.+|..
T Consensus 169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence 99999999987 542 334456788999999999 9999999999999999999765 345666777755
Q ss_pred ----eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC-CCceEEEEEEeCCCcCEEEEeeCCCe-EEEEE
Q psy4653 144 ----YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGADDRL-VKIWD 215 (229)
Q Consensus 144 ----~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~-i~iwd 215 (229)
.|.++.|+| ++.+|++++.|+.|++||+.+++.+..+.+| ...|.+++ + ++.+|++|+.||. .+.|.
T Consensus 249 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~--~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 249 NLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C--SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E--CSSEEEEEEECTHHHHCSS
T ss_pred ccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C--CCCeEEEEecCCccccccc
Confidence 899999998 6889999999999999999999999999998 89999888 3 5568999999998 54444
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.7e-28 Score=193.97 Aligned_cols=175 Identities=13% Similarity=0.230 Sum_probs=148.9
Q ss_pred hhhhhcccCCCceEEEEEcc--CCCeEEEEEecCeEEEEEcCCC---------CeEEEEEecCcCeEEEEEcCC--CCEE
Q psy4653 6 DIKRKLTARSDRVKCCDLHP--TEPWMLASLYNGHVHVWNHETN---------QNVKSFEVCDLPVRAAKFVPR--KNWI 72 (229)
Q Consensus 6 ~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l 72 (229)
+....+.+|..+|.+++|+| ++..|++++.||.|++||++++ +.+..+..+...+.++.|+|+ +++|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 34556789999999999999 5999999999999999999987 446677778889999999999 9999
Q ss_pred EEEeCCCeEEEEECCCcc------------------------------------------------------------eE
Q psy4653 73 VTGSDDMQVCVFNYNTLE------------------------------------------------------------RF 92 (229)
Q Consensus 73 ~sg~~d~~i~iwd~~~~~------------------------------------------------------------~~ 92 (229)
++|+.|+.|++||+.+++ .+
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 999999999999986432 14
Q ss_pred EEeccCCCceeEEEEcCCC----CEEEEEeCCCcEEEEecCCc-------------------------------------
Q psy4653 93 HSFEAHSDYVRCVAVHPTQ----PFLLTSSDDMLIKLWNWEKA------------------------------------- 131 (229)
Q Consensus 93 ~~~~~h~~~i~~v~~~~~~----~~~~s~~~d~~v~lwd~~~~------------------------------------- 131 (229)
..+.+|...|.+++|+|++ .++++++.|+.|++||++..
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 4556788999999999998 78999999999999998753
Q ss_pred --------eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE
Q psy4653 132 --------WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181 (229)
Q Consensus 132 --------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 181 (229)
......+.+|...|..+.|+| ++.+|++|+.|+.|++||+..+.....+
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred eeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 134455678999999999998 6789999999999999999877654433
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.8e-26 Score=188.92 Aligned_cols=212 Identities=13% Similarity=0.126 Sum_probs=175.9
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT 88 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~ 88 (229)
.+.+|...|.+++|+|++..+++++.|+.|++||+++++.+..+..+...+.++.|+|+++.+ ++++.|+.|.+||+++
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 466899999999999999999999999999999999999988888788889999999999977 4555899999999999
Q ss_pred cceEEEeccCCCceeEEEEcCCCCEEEEEe--------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSS--------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~--------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 160 (229)
++.+..+..+ ..+.+++|+|+++.+++++ .|+.|++||+...... ... .|...+..+.|+|....++++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~~~g~~l~~~ 320 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI-DTI-GPPGNKRHIVSGNTENKIYVS 320 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE-EEE-EEEECEEEEEECSSTTEEEEE
T ss_pred CcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE-eec-cCCCCcceEEECCCCCEEEEE
Confidence 8888777654 4589999999999998887 5889999999876432 222 455678899999854346678
Q ss_pred EECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeC---------------CCeEEEEECCCCeEEEee
Q psy4653 161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD---------------DRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 161 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---------------d~~i~iwd~~~~~~~~~~ 225 (229)
++.|+.|++||+.+++.+..+. +...+.+++|. +++.+|++++. ||.|++||..+++.+..+
T Consensus 321 ~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 321 DMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALS--PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC--TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred ecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEc--CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 8899999999999887776665 56678889885 45566777665 579999999999988877
Q ss_pred cc
Q psy4653 226 ES 227 (229)
Q Consensus 226 ~~ 227 (229)
..
T Consensus 398 ~~ 399 (433)
T 3bws_A 398 EA 399 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.8e-27 Score=189.74 Aligned_cols=198 Identities=14% Similarity=0.195 Sum_probs=154.2
Q ss_pred CceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-------------------------
Q psy4653 16 DRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK------------------------- 69 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------- 69 (229)
..+..+++.++++.++ +|+.|+.|++||..+++.+..+. +..++.++.|+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCE
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEec
Confidence 3588899999988884 56788999999999999888776 44578888887642
Q ss_pred ----------CEEEE--EeCCCeEEEEECCCcc---------------e-EEEeccCCCceeEEEEcCCCCEEEEEeCCC
Q psy4653 70 ----------NWIVT--GSDDMQVCVFNYNTLE---------------R-FHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121 (229)
Q Consensus 70 ----------~~l~s--g~~d~~i~iwd~~~~~---------------~-~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~ 121 (229)
++++. |+.||.|++||+++++ + +..+.+|.+.|.+++|+|++.++++++.|+
T Consensus 138 ~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 138 RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 23444 6788999999998754 1 677889999999999999999999999999
Q ss_pred c-EEEEecCCceeeeeeee-c-ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc--eEEE---------------
Q psy4653 122 L-IKLWNWEKAWACQQVFE-G-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP--NFTL--------------- 181 (229)
Q Consensus 122 ~-v~lwd~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~--------------- 181 (229)
+ |++||++.... ...+. + |...|.+++|+| ++.+|++++.|++|++||+..... ...+
T Consensus 218 ~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
T 3vu4_A 218 TIIRVFKTEDGVL-VREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL 295 (355)
T ss_dssp SEEEEEETTTCCE-EEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred CEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence 8 99999987644 44455 5 899999999998 689999999999999999975421 1111
Q ss_pred -----ec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 182 -----EG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 182 -----~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
.. +......++| .+++.+|++++.||.+++|++..
T Consensus 296 ~~~~~~~~~~~~~~~~a~--~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 296 CNFKLSVDKHVRGCKIAW--ISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEECCCCTTCCCCEEEE--SSSSEEEEEETTTTEEEEEEEEE
T ss_pred eEEEeccCCCCCceEEEE--eCCCCEEEEEeCCCeEEEEEEEc
Confidence 10 1112245666 45667899999999999999865
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6.1e-26 Score=184.55 Aligned_cols=212 Identities=11% Similarity=0.063 Sum_probs=169.3
Q ss_pred hhhcccCCCceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFN 85 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd 85 (229)
.+.+.+| ..+.+++|+|+++.++ +++.|+.|++||+.+++.+..+..+. .+.++.|+|++++|+ +++.++.|.+||
T Consensus 25 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 25 TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence 3445555 4689999999999875 55689999999999999888877655 899999999999775 555779999999
Q ss_pred CCCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE-EEEEC
Q psy4653 86 YNTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF-ASASL 163 (229)
Q Consensus 86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~ 163 (229)
+++++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+.... ....+..+ ..+..+.|+| ++..+ ++++.
T Consensus 103 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~ 178 (391)
T 1l0q_A 103 TTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTP-DGTKVYVANFD 178 (391)
T ss_dssp TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECT-TSSEEEEEETT
T ss_pred CCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-CCcceEEECC-CCCEEEEEeCC
Confidence 9998887777654 568999999999977 688889999999998764 34444444 3458889998 45555 67889
Q ss_pred CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee---CCCeEEEEECCCCeEEEeeccC
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA---DDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
|+.|++||+++++....+.. ...+.+++|. +++.+|++++ .|+.|++||+++++++..++.+
T Consensus 179 ~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~--~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 243 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVKV-EAAPSGIAVN--PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (391)
T ss_dssp TTEEEEEETTTTEEEEEEEC-SSEEEEEEEC--TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEECCCCeEEEEEec-CCCccceEEC--CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC
Confidence 99999999998877666654 4568888884 4556777776 7999999999999988887654
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=9.5e-28 Score=190.00 Aligned_cols=161 Identities=12% Similarity=0.119 Sum_probs=128.6
Q ss_pred hhhcccCCCceEEEEEcc---CCCeEEEEEecCeEEEEEcCCCCeEEEEEecC---cCeEEEEEcCCCCEE---------
Q psy4653 8 KRKLTARSDRVKCCDLHP---TEPWMLASLYNGHVHVWNHETNQNVKSFEVCD---LPVRAAKFVPRKNWI--------- 72 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p---~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l--------- 72 (229)
...+.+|+..|..++|+| +++.|++|+.|++|+|||+.+++.+..+..+. ..+.++.|+|+++++
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 344667888888888888 67889999999999999999999999987543 357788999999876
Q ss_pred ---EEEeCCCeEEEEECCCcceEEEe-----ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee
Q psy4653 73 ---VTGSDDMQVCVFNYNTLERFHSF-----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144 (229)
Q Consensus 73 ---~sg~~d~~i~iwd~~~~~~~~~~-----~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~ 144 (229)
++|+.|++|++||..+++.+..+ .+|...+.+..++ +..+++++.|++|+|||+..+ ++...+.+|...
T Consensus 251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~ 327 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQ 327 (356)
T ss_dssp -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-SEEEEECCC--C
T ss_pred ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCC
Confidence 66888999999999999877654 3666655444444 778999999999999999877 456677888776
Q ss_pred EE-EEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653 145 VM-QIVINPKDNNTFASASLDRTVKVWQL 172 (229)
Q Consensus 145 v~-~~~~~~~~~~~l~s~~~d~~i~~wd~ 172 (229)
+. .++|+| ++.+|+||+.|++|++||+
T Consensus 328 vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 55 589999 7899999999999999986
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.2e-25 Score=182.77 Aligned_cols=212 Identities=15% Similarity=0.116 Sum_probs=171.4
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEE
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFN 85 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd 85 (229)
.+.+..+. .+.+++|+|+++.+++++ .++.|++||+.+++.+..+..+ ..+.++.|+|+++.| ++++.|+.|.+||
T Consensus 67 ~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34445443 899999999999887665 6799999999999888777654 468999999999977 7888899999999
Q ss_pred CCCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE--
Q psy4653 86 YNTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS-- 162 (229)
Q Consensus 86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-- 162 (229)
+++++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||++.... ...+. +...+..+.++| ++.++++++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~ 220 (391)
T 1l0q_A 145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNP-EGTKAYVTNVD 220 (391)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECT-TSSEEEEEEEC
T ss_pred CCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEe-cCCCccceEECC-CCCEEEEEecC
Confidence 9998888877765 457999999999977 6778899999999987643 33333 345678899998 577777776
Q ss_pred -CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEE-EEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 163 -LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 163 -~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
.++.|++||+.+++.+..+..|. .+.+++|. +++.+| ++++.|+.|++||+.+++.+.+++.+
T Consensus 221 ~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s--~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 221 KYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT--PDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp SSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred cCCCcEEEEECCCCeEEEEEecCC-CccEEEEc--cCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 78999999999888888887765 46778884 455555 67889999999999999999888654
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.6e-26 Score=186.34 Aligned_cols=211 Identities=10% Similarity=0.088 Sum_probs=168.5
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-----EecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-----EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
.+..+ ..+.+++|+|++..+++++.++.|++||+.+++..... ..+...+.++.|+++++++++++.|+.|++|
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 34433 45679999997766777778899999999999887633 3455679999999999999999999999999
Q ss_pred ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE-
Q psy4653 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS- 162 (229)
Q Consensus 85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~- 162 (229)
|+++++.+..+..|...+.+++|+|++..++ +++.|+.|++||++.... ...+..+ ..+..+.++| ++..+++++
T Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~-~g~~l~~~~~ 273 (433)
T 3bws_A 197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDKI-GLPRGLLLSK-DGKELYIAQF 273 (433)
T ss_dssp ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCCC-SEEEEEEECT-TSSEEEEEEE
T ss_pred ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecCC-CCceEEEEcC-CCCEEEEEEC
Confidence 9999998888888999999999999999875 555899999999987643 3444433 4588999998 577888777
Q ss_pred -------CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 163 -------LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 163 -------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
.|+.|++||+.+++.+..+ .|...+.+++|.+ +++ ++++++.|+.|++||+++++.+..+..
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~--~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 343 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGN--TENKIYVSDMCCSKIEVYDLKEKKVQKSIPV 343 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECS--STTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECC--CCCEEEEEecCCCEEEEEECCCCcEEEEecC
Confidence 4889999999887665544 3445677888854 443 667789999999999999998877653
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=4.6e-24 Score=175.80 Aligned_cols=211 Identities=9% Similarity=0.003 Sum_probs=164.3
Q ss_pred hhhcccCCCceEEEEEccCCCeEEEEEecC---eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCC--eE
Q psy4653 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNG---HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDM--QV 81 (229)
Q Consensus 8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i 81 (229)
.+.+.+|...|.+++|+|+++.|++++.++ .|++||+.+++.. .+..+...+.++.|+|+|+.|+ +++.++ .|
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 355778999999999999999999999875 9999999998875 4555667899999999999877 666665 49
Q ss_pred EEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeC-CC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653 82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-DM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158 (229)
Q Consensus 82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (229)
.+||+++++. ..+..|...+.+++|+|+++.++.++. ++ .|++||+..... ..+..+...+..+.|+| ++.+|
T Consensus 250 ~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~sp-dG~~l 325 (415)
T 2hqs_A 250 YVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSS-DGKFM 325 (415)
T ss_dssp EEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCCSSSEEEEEEECT-TSSEE
T ss_pred EEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE--EEEecCCCcccCeEECC-CCCEE
Confidence 9999988765 566778889999999999998887775 45 677778876532 23344566788999998 67888
Q ss_pred EEEECC---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC---eEEEEECCCCeEEEeeccC
Q psy4653 159 ASASLD---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 159 ~s~~~d---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~ 228 (229)
++++.+ ..|++||+.+++. ..+..+. .+.+++|. +++.+|++++.|+ .|.+||+..+ ....++.+
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~s--pdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~ 396 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLA--PNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPAT 396 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEEC--TTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCS
T ss_pred EEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEc--CCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCC
Confidence 877754 5899999987765 3455554 67888884 5667788888776 7999999754 45666544
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=1.1e-24 Score=180.58 Aligned_cols=199 Identities=12% Similarity=0.067 Sum_probs=151.5
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcCCC----------CeEEEE-----EecCcCeEEEEEcCCCCEEE----EE
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN----------QNVKSF-----EVCDLPVRAAKFVPRKNWIV----TG 75 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~l~----sg 75 (229)
...++.++++|++..+++++.++ +++|+...- ..+..+ ..+...+.++.|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999998887 889885321 011110 11345699999999999999 78
Q ss_pred eCCCeEEEEECCCc--------c---eEEEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeeccee
Q psy4653 76 SDDMQVCVFNYNTL--------E---RFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH 143 (229)
Q Consensus 76 ~~d~~i~iwd~~~~--------~---~~~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~ 143 (229)
+.|+.|++||+++. + .+..+.+|...|.+++|+|+ +.++++++.|++|++||++.... .....+|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCC
Confidence 89999999998654 1 24556779999999999998 78999999999999999987633 334456888
Q ss_pred eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC-------CceEEEEEEeCCCcCEEEE-eeCCC------
Q psy4653 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE-------KGVNCVDYYHGGDKPYLIS-GADDR------ 209 (229)
Q Consensus 144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~l~s-~s~d~------ 209 (229)
.+.+++|+| ++.+|++|+.|+.|++||.+ +.....+..|. ..+.+++|.. +..++++ +..||
T Consensus 194 ~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~--~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 194 AVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG--TYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp CEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE--TTEEEEEEEETTCCSSSCC
T ss_pred ceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec--CceEEEEEccCCCccCCCC
Confidence 999999999 68999999999999999998 55555554442 2677888864 4445543 44453
Q ss_pred eEEEEECCCC
Q psy4653 210 LVKIWDYQNK 219 (229)
Q Consensus 210 ~i~iwd~~~~ 219 (229)
.+++|++++.
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 3899999764
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=9.1e-23 Score=158.64 Aligned_cols=206 Identities=8% Similarity=-0.002 Sum_probs=154.6
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-CCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC--CCeEEEE-
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-NQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD--DMQVCVF- 84 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~--d~~i~iw- 84 (229)
.+..|...|.+++|+|+++.+++++ ++.|.+||+.+ ++.......+. ..+.++.|+|++++|++++. ++...||
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4567888999999999999888876 89999999999 87766554442 56888999999999999983 3444555
Q ss_pred -ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 85 -NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 85 -d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
+..+++ ...+..+ ..+.+++|+|+++.++ +++.++.+++|+++........+..+...+..+.|+| ++..++.++
T Consensus 115 ~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~ 191 (297)
T 2ojh_A 115 LPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNS 191 (297)
T ss_dssp EETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred EECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEe
Confidence 555544 3444433 3488999999999876 7888999999996432222344455667789999998 567666555
Q ss_pred -CCCcEEEEeCC-CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----------CeEEEEECCCCeE
Q psy4653 163 -LDRTVKVWQLG-SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----------RLVKIWDYQNKTC 221 (229)
Q Consensus 163 -~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~ 221 (229)
.|+.+++|++. .......+..|...+.+++|. +++.+|++++.+ +.|.+||+++++.
T Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS--PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC--TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred cCCCCccEEEECCCCCCcEEEecCCcccCCeEEC--CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 69999999986 455666777777777888884 466678777765 5699999988764
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=3.4e-22 Score=164.61 Aligned_cols=206 Identities=8% Similarity=0.027 Sum_probs=158.6
Q ss_pred hhcccCCCceEEEEEccC--------------CCeEEEEEec------CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC
Q psy4653 9 RKLTARSDRVKCCDLHPT--------------EPWMLASLYN------GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~--------------~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~ 68 (229)
+.+.+|...+..+++++. +..++.++.+ +.|++||+..+ ....+..+...+.++.|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC
Confidence 457788888888887752 5566666654 79999999854 45666777889999999999
Q ss_pred CCEEEEEeCCC---eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCc--EEEEecCCceeeeeeeecce
Q psy4653 69 KNWIVTGSDDM---QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDML--IKLWNWEKAWACQQVFEGHT 142 (229)
Q Consensus 69 ~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~--v~lwd~~~~~~~~~~~~~~~ 142 (229)
|+.|++++.++ .|.+||+++++.. .+..|...+.+++|+|+++.++ +++.|+. |++||+..... ..+..|.
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~ 266 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGR 266 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCC
Confidence 99999999885 8999999988764 4666888999999999999877 6766655 99999976532 4455677
Q ss_pred eeEEEEEEcCCCCCEEEEEEC-CC--cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC---CeEEEEEC
Q psy4653 143 HYVMQIVINPKDNNTFASASL-DR--TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD---RLVKIWDY 216 (229)
Q Consensus 143 ~~v~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~i~iwd~ 216 (229)
..+..+.|+| ++..|++++. ++ .|.+||+.+++. ..+..+...+.+++|+ +++.+|++++.+ ..|.+||+
T Consensus 267 ~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s--pdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 267 SNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEEC--TTSSEEEEEEECSSCEEEEEEET
T ss_pred CcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEEC--CCCCEEEEEECcCCceEEEEEEC
Confidence 7899999998 6788887775 45 677778877653 3455566677888884 466678777754 58999999
Q ss_pred CCCeEE
Q psy4653 217 QNKTCV 222 (229)
Q Consensus 217 ~~~~~~ 222 (229)
.++++.
T Consensus 343 ~~~~~~ 348 (415)
T 2hqs_A 343 ATGGVQ 348 (415)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 988764
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.1e-21 Score=166.79 Aligned_cols=215 Identities=12% Similarity=0.143 Sum_probs=164.4
Q ss_pred hhhcc-cCCCceEEEEEccCCCeEEEEEecCeEEEEEc--CCCCeEEEEEecCcCeEEEEEcC----CCCEEEEEe-CCC
Q psy4653 8 KRKLT-ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNH--ETNQNVKSFEVCDLPVRAAKFVP----RKNWIVTGS-DDM 79 (229)
Q Consensus 8 ~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~sg~-~d~ 79 (229)
...+. ++. +.+++|+|++++|++++.|+.|.+||+ .+++.+..+... .....+.|+| +|++|++++ .++
T Consensus 172 ~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~~~~~~ 248 (543)
T 1nir_A 172 VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAGAYWPP 248 (543)
T ss_dssp EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEEEccCC
Confidence 34455 443 899999999999999999999999999 888888877743 4579999999 999999988 489
Q ss_pred eEEEEECCCcceEEEecc----------CC-CceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEE
Q psy4653 80 QVCVFNYNTLERFHSFEA----------HS-DYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147 (229)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~----------h~-~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~ 147 (229)
+|.+||..+++.+..+.. |. ..+.++.++|++.. +++...+++|.+||......+......+...+..
T Consensus 249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~ 328 (543)
T 1nir_A 249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHD 328 (543)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCC
T ss_pred eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccC
Confidence 999999999988877654 22 37889999998775 5677788999999987653322111224445677
Q ss_pred EEEcCCCCCEEE-EEECCCcEEEEeCCCCCceEEEec----CCCceEEEEEEeCCCcCEEEEee-CCCeEEEEECCC---
Q psy4653 148 IVINPKDNNTFA-SASLDRTVKVWQLGSASPNFTLEG----HEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQN--- 218 (229)
Q Consensus 148 ~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~--- 218 (229)
+.|+| ++.+++ ++..+++|.+||..+++.+..+.. |..... .|.+...+.+++|+. .|++|.+||+.+
T Consensus 329 ~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~--~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 329 GGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA--NFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp EEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE--EEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc--ccCCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 88998 677665 445689999999999988877764 543332 233333456777776 689999999998
Q ss_pred ----CeEEEeeccC
Q psy4653 219 ----KTCVQTLESG 228 (229)
Q Consensus 219 ----~~~~~~~~~~ 228 (229)
.+++++++.+
T Consensus 406 ~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 406 PQYAWKKVAELQGQ 419 (543)
T ss_dssp TTTBTSEEEEEECS
T ss_pred chhcCeEEEEEEcC
Confidence 8999999865
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2.1e-21 Score=165.01 Aligned_cols=200 Identities=9% Similarity=0.123 Sum_probs=160.7
Q ss_pred EEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCcceEEEeccCC
Q psy4653 22 DLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY--NTLERFHSFEAHS 99 (229)
Q Consensus 22 ~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~--~~~~~~~~~~~h~ 99 (229)
.|+|++..++++..|++|.+||..+++++..+..... +.++.|+|++++|++++.|+.|.+||+ ++++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4899998888888999999999999999988875443 889999999999999999999999999 7888888777 44
Q ss_pred CceeEEEEcC----CCCEEEEEeC-CCcEEEEecCCceeeeeeeec----------cee-eEEEEEEcCCCCCEEEEEEC
Q psy4653 100 DYVRCVAVHP----TQPFLLTSSD-DMLIKLWNWEKAWACQQVFEG----------HTH-YVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 100 ~~i~~v~~~~----~~~~~~s~~~-d~~v~lwd~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~s~~~ 163 (229)
.....++|+| +++++++++. +++|.+||....... ..+.. |.. .+..+.++|..+.++++...
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 5679999999 9999988874 899999998776433 33332 222 57888999866667888889
Q ss_pred CCcEEEEeCCCCCceE--EEecCCCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECCCCeEEEeecc
Q psy4653 164 DRTVKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
+++|.+||+.+.+.+. .+. +...+..+.|. +++++|+ ++..+++|.+||.++++++.+++.
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s--pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD--SSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC--TTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceEC--CCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence 9999999998765443 333 45557778884 4566655 455689999999999999988874
No 133
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2.7e-22 Score=166.17 Aligned_cols=159 Identities=14% Similarity=0.050 Sum_probs=126.0
Q ss_pred CCCceEEEEEccCCCeEE----EEEecCeEEEEEcCCC--------Ce---EEEEEecCcCeEEEEEcCC-CCEEEEEeC
Q psy4653 14 RSDRVKCCDLHPTEPWML----ASLYNGHVHVWNHETN--------QN---VKSFEVCDLPVRAAKFVPR-KNWIVTGSD 77 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~----~~~~dg~v~~wd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~sg~~ 77 (229)
|..+|.+++|+|++++|+ +|+.|+.|++||+.++ +. ...+..|...|.++.|+|+ +++|++|+.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 556799999999999999 6778999999998764 22 3344457789999999998 789999999
Q ss_pred CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee-------cceeeEEEEEE
Q psy4653 78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-------GHTHYVMQIVI 150 (229)
Q Consensus 78 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-------~~~~~v~~~~~ 150 (229)
||.|++||++++..+....+|...|.+++|+|++++|++|+.|++|++||++ ... ...+. .|...+..+.|
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeEEEEEE
Confidence 9999999999887766667788999999999999999999999999999997 222 22222 23457899999
Q ss_pred cCCCCCEEE-EEECCCc------EEEEeCCCC
Q psy4653 151 NPKDNNTFA-SASLDRT------VKVWQLGSA 175 (229)
Q Consensus 151 ~~~~~~~l~-s~~~d~~------i~~wd~~~~ 175 (229)
++ +..+++ ++..|+. +++|+++..
T Consensus 249 ~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 249 IG-TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EE-TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ec-CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 87 444443 3344533 899999754
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=2.4e-21 Score=169.74 Aligned_cols=205 Identities=7% Similarity=0.025 Sum_probs=157.1
Q ss_pred CCceEEEEEccCCCeEEEEEe-cC-----eEEEEEcCCCCeEEEEEecCc------------------------CeEEEE
Q psy4653 15 SDRVKCCDLHPTEPWMLASLY-NG-----HVHVWNHETNQNVKSFEVCDL------------------------PVRAAK 64 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~-dg-----~v~~wd~~~~~~~~~~~~~~~------------------------~v~~~~ 64 (229)
...|.+++|+|||+.|++++. |+ .|.+||+.+++....+..+.. .+.++.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999988 88 999999999987766654322 278899
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCcc--eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce
Q psy4653 65 FVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT 142 (229)
Q Consensus 65 ~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~ 142 (229)
|+|+|++|++++. +.|.+||++++. .+..+..|...+.+++|+|+++.++.++ ++.|++||+..+.. ..+...+.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EEeccCCc
Confidence 9999999999886 999999998873 4456667888899999999999998887 46999999987533 33322222
Q ss_pred ee----------------EEEEEEcCCCCCEEEEEECCC---------------------------------cEEEEeCC
Q psy4653 143 HY----------------VMQIVINPKDNNTFASASLDR---------------------------------TVKVWQLG 173 (229)
Q Consensus 143 ~~----------------v~~~~~~~~~~~~l~s~~~d~---------------------------------~i~~wd~~ 173 (229)
.. +..+.|+| ++..|++++.|+ .|.+||+.
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred cceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 21 36689998 688888887665 78899998
Q ss_pred C-CCceEEEe--cCCCceEEEEEEeCCCcCEEEEee-----CCCeEEEEECCCCeEEEeec
Q psy4653 174 S-ASPNFTLE--GHEKGVNCVDYYHGGDKPYLISGA-----DDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 174 ~-~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~~ 226 (229)
+ ++...... .|...+..++| +.+ ++|+.++ .+..|.+||+.++++...+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence 7 76543332 36667888898 754 4566544 36789999999998766554
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=3.2e-20 Score=148.39 Aligned_cols=208 Identities=12% Similarity=0.059 Sum_probs=160.5
Q ss_pred CceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcC---------eEEEEEcCCCCEEEEEe--CCCeEEE
Q psy4653 16 DRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLP---------VRAAKFVPRKNWIVTGS--DDMQVCV 83 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~sg~--~d~~i~i 83 (229)
..+..++|+|+++.++++. .++.|.+||..+++.+..+...... ..++.|+|+++.+++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 4578899999999776655 5799999999999988877654321 68899999999777765 4788999
Q ss_pred EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee---cceeeEEEEEEcCCCCCEEE-
Q psy4653 84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE---GHTHYVMQIVINPKDNNTFA- 159 (229)
Q Consensus 84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~- 159 (229)
||.++++.+..+..+...+.+++|+|+++.+++++.++.|.+||+........... ++...+..+.++| ++..++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~ 247 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFI 247 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEE
Confidence 99999988888775666688999999999999999999999999987644333222 2455677889998 456554
Q ss_pred EEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 160 SASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 160 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+...++.|.+||..+++.+..+..... ..++|.+ +++ ++++...++.|.+||..+++.+..++.+
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNP--ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSSC--CCEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECC--CCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence 444569999999998887777765432 4577754 444 4555557999999999999988877643
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=7.4e-20 Score=146.30 Aligned_cols=208 Identities=8% Similarity=-0.022 Sum_probs=160.0
Q ss_pred CCceEEEEEccCCCeEEEEEe-------cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEEC
Q psy4653 15 SDRVKCCDLHPTEPWMLASLY-------NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNY 86 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~-------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~ 86 (229)
...+..++|+|+++.+++++. ++.|.+||..+++.+..+.... ....+.|+|+++.+ +++..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 356889999999998888773 6789999999999888877543 47789999999955 55556789999999
Q ss_pred CCcceEEEeccCCCc---------eeEEEEcCCCCEEEEEe--CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653 87 NTLERFHSFEAHSDY---------VRCVAVHPTQPFLLTSS--DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~---------i~~v~~~~~~~~~~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (229)
++++.+..+..+... ..+++|+|++..+++++ .++.|.+||+..... ...+..+...+..+.++| ++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~-dg 196 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDS-EG 196 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEET-TT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECC-CC
Confidence 999887777654322 68899999999776665 578999999987643 344443444467788888 67
Q ss_pred CEEEEEECCCcEEEEeCCCCCceEEEec----CCCceEEEEEEeCCCcCEEEE-eeCCCeEEEEECCCCeEEEeecc
Q psy4653 156 NTFASASLDRTVKVWQLGSASPNFTLEG----HEKGVNCVDYYHGGDKPYLIS-GADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
..++.++.++.|.+||..+++....+.. +...+..++|.+ ++.+|+. ...++.|.+||..+++.+..++.
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT--ARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET--TTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC--CCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 8888888899999999998887776654 444567788864 4444444 44569999999999998887754
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=9.8e-20 Score=144.67 Aligned_cols=205 Identities=9% Similarity=0.063 Sum_probs=152.4
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEe-cCeEEEEEcCCCCe-EEEEEecCcCeEEEEEcCCCCEEEEEeCCC---eEEEE
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLY-NGHVHVWNHETNQN-VKSFEVCDLPVRAAKFVPRKNWIVTGSDDM---QVCVF 84 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~---~i~iw 84 (229)
.+..+...+ +++|+|+++.+++++. ++.|.+||..+++. ...+..+..+..++.|+|++++|+++..++ .|.+|
T Consensus 35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 334445566 9999999998877765 89999999999987 667666666666599999999998665553 89999
Q ss_pred ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCc-EEEEecCCceee----eeeeecceeeEEEEEEcCCCCC-E
Q psy4653 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDML-IKLWNWEKAWAC----QQVFEGHTHYVMQIVINPKDNN-T 157 (229)
Q Consensus 85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~-v~lwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~ 157 (229)
|+++++.+..+..+ ....+++|+|++++++ +...++. |.+|++...... .... ........+.|+| ++. +
T Consensus 114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~sp-dg~~l 190 (331)
T 3u4y_A 114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTP-DGNFA 190 (331)
T ss_dssp ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECT-TSSEE
T ss_pred ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECC-CCCEE
Confidence 99998887776644 4568999999998554 5566688 999998753222 1112 2233467889998 566 4
Q ss_pred EEEEECCCcEEEEeCCCCCc---eEEEecCCCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECCCCeE
Q psy4653 158 FASASLDRTVKVWQLGSASP---NFTLEGHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 158 l~s~~~d~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~ 221 (229)
++++..++.|++||+.+++. +..+..+ ..+..++|. +++++|+ +...++.|.+||..+++.
T Consensus 191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s--pdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 191 FVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVS--RDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEEC--TTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred EEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEEC--CCCCEEEEEEcCCCEEEEEECCCCce
Confidence 55566789999999998887 6666654 456778884 4566554 445688899999999877
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=7.9e-20 Score=144.97 Aligned_cols=203 Identities=11% Similarity=0.063 Sum_probs=154.5
Q ss_pred ceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecC-----cCeEEEEEcCCCCEEEEEe------------CC
Q psy4653 17 RVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCD-----LPVRAAKFVPRKNWIVTGS------------DD 78 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~------------~d 78 (229)
.+..++|+|+++.++++. .++.|.+||+.+++.+..+.... ..+..+.|+|+++.|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 478899999998776654 57899999999998877765422 2567899999999988886 57
Q ss_pred CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee-------------------
Q psy4653 79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE------------------- 139 (229)
Q Consensus 79 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~------------------- 139 (229)
+.|.+||+++++.+..+.. ...+.+++|+|++++++++ ++.|.+||+...........
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence 9999999998887776654 4567889999999988877 68999999876532211100
Q ss_pred ----------------------------------------------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653 140 ----------------------------------------------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173 (229)
Q Consensus 140 ----------------------------------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 173 (229)
.+...+..+.++| ++.+++++ ++.|.+||+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETT
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECC
Confidence 0111234578888 67777776 7899999999
Q ss_pred CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 174 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+++.+..+..+ ..+.+++|. +++++|++++.++.|++||+++++.+..++.+
T Consensus 269 ~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 269 KNASIKRVPLP-HSYYSVNVS--TDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTEEEEEEECS-SCCCEEEEC--TTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCcCcceecCC-CceeeEEEC--CCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 88777666643 346778884 45667888888999999999999998887654
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=6e-20 Score=146.01 Aligned_cols=209 Identities=12% Similarity=0.117 Sum_probs=144.8
Q ss_pred cCCCceEEEEEccCCCeEEEEEec-CeEEEEEcC--CCCe--EEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYN-GHVHVWNHE--TNQN--VKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNY 86 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~d-g~v~~wd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~ 86 (229)
.|...+.+++|+|+++.|++++.+ +.|.+|++. +++. +..+.... .+..+.|+|++++|++++ .++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 467789999999999999998876 999999998 5553 33344333 788999999999776665 4889999999
Q ss_pred C---CcceEEEeccCCCceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeee----eeec-ceeeEEEEEEcCCCCCE
Q psy4653 87 N---TLERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQ----VFEG-HTHYVMQIVINPKDNNT 157 (229)
Q Consensus 87 ~---~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~~ 157 (229)
+ ..+.+..+..+ ..+.+++|+|+++++++++ .++.|++||+........ .... ....+..+.|+| ++.+
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~ 191 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQY 191 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSE
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCE
Confidence 4 33444444433 4588999999999887776 899999999976222221 1121 234577899998 5665
Q ss_pred E-EEEECCCcEEEEeCCC--CCc--eEEEe----cC--CCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECC----CCeE
Q psy4653 158 F-ASASLDRTVKVWQLGS--ASP--NFTLE----GH--EKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQ----NKTC 221 (229)
Q Consensus 158 l-~s~~~d~~i~~wd~~~--~~~--~~~~~----~h--~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~----~~~~ 221 (229)
+ +++..++.|.+|++.. +.. ...+. ++ ...+..++|. +++.+|+ ++..|+.|++||++ +.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s--~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT--PDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC--CCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 5 4555899999999953 322 22222 11 1235567774 4555555 66689999999998 3345
Q ss_pred EEeec
Q psy4653 222 VQTLE 226 (229)
Q Consensus 222 ~~~~~ 226 (229)
+..+.
T Consensus 270 ~~~~~ 274 (343)
T 1ri6_A 270 EGFQP 274 (343)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 54443
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=2.1e-21 Score=169.69 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=153.5
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc---CeEEEEEcCCCCEEEEEeCC---------CeEEE
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL---PVRAAKFVPRKNWIVTGSDD---------MQVCV 83 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~sg~~d---------~~i~i 83 (229)
..+.+++|+|+|+++++ +.||.|++||+.+++....+..+.. .+.++.|+|+|++|++++.+ +.+.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 35788999999997665 7899999999999988777665543 48999999999999999874 77889
Q ss_pred EECCCcceEEEe---ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee----------------
Q psy4653 84 FNYNTLERFHSF---EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY---------------- 144 (229)
Q Consensus 84 wd~~~~~~~~~~---~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~---------------- 144 (229)
||+++++. ..+ ..|...+..++|||+++.++.++. +.|++||+..+.. ..+...+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEec
Confidence 99988765 333 344455889999999999998876 7999999976533 3333332221
Q ss_pred --EEEEEEcCCCCCEEEEEECCC----------------------------------cEEEEeCCCCCceEEEecC----
Q psy4653 145 --VMQIVINPKDNNTFASASLDR----------------------------------TVKVWQLGSASPNFTLEGH---- 184 (229)
Q Consensus 145 --v~~~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~~~h---- 184 (229)
+..+.|+| ++..|++++.|. .|++||+.+++....+..+
T Consensus 173 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 173 KTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred cCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 26789999 788888887553 7999999887765566554
Q ss_pred --CCceEEEEEEeCCCcCEEEEeeC----CCeEEEEECCCCeEEEee
Q psy4653 185 --EKGVNCVDYYHGGDKPYLISGAD----DRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 185 --~~~v~~~~~~~~~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~ 225 (229)
...+..++|+ +++++|++.+. +..|++||+.++++...+
T Consensus 252 ~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 252 MREYYITMVKWA--TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp GSSEEEEEEEES--SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred CccceeEEEEEe--CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 4567788885 46667766543 367999999998876654
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=2e-20 Score=163.91 Aligned_cols=203 Identities=11% Similarity=0.088 Sum_probs=153.4
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 94 (229)
.|.+++|+||++.|++++. +.|.+||+.++. ....+..+...+..+.|+|+|++|+.++ ++.|.+||+++++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 4889999999999998886 999999999882 3344555667899999999999999987 46899999998776554
Q ss_pred eccCCCc----------------eeEEEEcCCCCEEEEEeCCC---------------------------------cEEE
Q psy4653 95 FEAHSDY----------------VRCVAVHPTQPFLLTSSDDM---------------------------------LIKL 125 (229)
Q Consensus 95 ~~~h~~~----------------i~~v~~~~~~~~~~s~~~d~---------------------------------~v~l 125 (229)
...+... +..++|+|+++.|+.++.|+ .|++
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4434332 47899999999998887765 7889
Q ss_pred EecCC-ceeeeeeee--cceeeEEEEEEcCCCCCEEEEEEC-----CCcEEEEeCCCCCceEEEecCCC----ceEEEEE
Q psy4653 126 WNWEK-AWACQQVFE--GHTHYVMQIVINPKDNNTFASASL-----DRTVKVWQLGSASPNFTLEGHEK----GVNCVDY 193 (229)
Q Consensus 126 wd~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~ 193 (229)
||+.. ... ..+.. .|...+..+.| | ++..|+.++. +..|++||+.+++....+..+.. .+..++|
T Consensus 268 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 268 ISPAEQAQT-QWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp ECSSTTCCC-EEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EECCCCCce-EEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 99876 532 33322 47778999999 8 6788886653 56899999998877666655543 3456777
Q ss_pred EeCCCcCEEEEeeCCCeEEEEECC-CCeEEEeecc
Q psy4653 194 YHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLES 227 (229)
Q Consensus 194 ~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~ 227 (229)
. ++++++++++.||.++||.+. .++ ...++.
T Consensus 345 s--pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 345 L--DDGSILWSSERTGFQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp C--TTSCEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred C--CCCeEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence 4 455688999999988888875 344 555554
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=3.7e-19 Score=141.41 Aligned_cols=199 Identities=14% Similarity=0.235 Sum_probs=137.3
Q ss_pred ceEEEEEccCCCeEEEEEe-cCeEEEEEcCCC---CeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-cc
Q psy4653 17 RVKCCDLHPTEPWMLASLY-NGHVHVWNHETN---QNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNYNT-LE 90 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~-~~ 90 (229)
.+.+++|+|+++.+++++. ++.|.+||+.++ +.+..+.. ...+.++.|+|++++|++++ .++.|.+||+++ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7899999999998887765 889999999533 33333332 34588899999999888777 899999999987 54
Q ss_pred eEE----EeccC-CCceeEEEEcCCCCEEEEE-eCCCcEEEEecCC--cee-eeeeee----cc--eeeEEEEEEcCCCC
Q psy4653 91 RFH----SFEAH-SDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEK--AWA-CQQVFE----GH--THYVMQIVINPKDN 155 (229)
Q Consensus 91 ~~~----~~~~h-~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~--~~~-~~~~~~----~~--~~~v~~~~~~~~~~ 155 (229)
... .+..+ ...+.+++|+|++++++.+ ..++.|.+|++.. +.. ...... ++ ...+..+.|+| ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg 242 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DG 242 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CC
Confidence 321 22222 3468899999999976544 5789999999953 211 111111 11 23456789998 56
Q ss_pred CEEE-EEECCCcEEEEeCCC--C--CceEEEecCCCceEEEEEEeCCCcCEEEEee-CCCeEEEEEC--CCCe
Q psy4653 156 NTFA-SASLDRTVKVWQLGS--A--SPNFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDY--QNKT 220 (229)
Q Consensus 156 ~~l~-s~~~d~~i~~wd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~--~~~~ 220 (229)
.+++ ++..++.|.+||+.. + +.+..+..+.. +..++|. +++.+|++++ .|+.|.+|++ ++++
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s--~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD--HSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC--TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC--CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 5555 666899999999973 2 23334444443 7778884 4556666666 6899999954 4653
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=2.1e-18 Score=137.00 Aligned_cols=202 Identities=10% Similarity=0.087 Sum_probs=143.5
Q ss_pred EEEccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCcce-EEEecc
Q psy4653 21 CDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQVCVFNYNTLER-FHSFEA 97 (229)
Q Consensus 21 ~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~-~~~~~~ 97 (229)
+.|.+++..+++ ...++.|.+||..+++.+..+.....+. .+.|+|++++|++++. ++.|.+||.++++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456777666554 5678999999999999988777655556 9999999996665555 88999999998887 666766
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCC---cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc-EEEEeCC
Q psy4653 98 HSDYVRCVAVHPTQPFLLTSSDDM---LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT-VKVWQLG 173 (229)
Q Consensus 98 h~~~i~~v~~~~~~~~~~s~~~d~---~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~ 173 (229)
+.....+++|+|++++++++..++ .|.+||+..... ...+..+ .....+.|+|....+++++..++. |.+|++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKID 159 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence 666666699999999988555553 899999987644 3333332 335789999943346666677788 9999987
Q ss_pred CCCceE----EEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeE---EEeecc
Q psy4653 174 SASPNF----TLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTC---VQTLES 227 (229)
Q Consensus 174 ~~~~~~----~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~---~~~~~~ 227 (229)
....+. ...........++|. ++++ +++++..++.|++||+++++. +.+++.
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~ 219 (331)
T 3u4y_A 160 ADGVLFDTGQEFISGGTRPFNITFT--PDGNFAFVANLIGNSIGILETQNPENITLLNAVGT 219 (331)
T ss_dssp TTCCEEEEEEEEECSSSSEEEEEEC--TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred CCCcEeecCCccccCCCCccceEEC--CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC
Confidence 544332 112233457778884 4555 455566799999999998887 766653
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=2.1e-18 Score=138.11 Aligned_cols=209 Identities=9% Similarity=0.072 Sum_probs=143.4
Q ss_pred cccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCC-CCe--EEEEEec---------CcCeEEEEEcCCCCEEEEEeC
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHET-NQN--VKSFEVC---------DLPVRAAKFVPRKNWIVTGSD 77 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~-~~~--~~~~~~~---------~~~v~~~~~~~~~~~l~sg~~ 77 (229)
+..+...+..++|+|+++.|++++ .++.|.+|++.. +.. +..+... ...+.++.|+|+++++++...
T Consensus 81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~ 160 (347)
T 3hfq_A 81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG 160 (347)
T ss_dssp EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC
Confidence 345677889999999999998887 689999999963 332 2222211 123788999999997777777
Q ss_pred CCeEEEEECC-CcceE--EEeccC-CCceeEEEEcCCCCEEE-EEeCCCcEEEEecCC--cee-eeeeeecce------e
Q psy4653 78 DMQVCVFNYN-TLERF--HSFEAH-SDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEK--AWA-CQQVFEGHT------H 143 (229)
Q Consensus 78 d~~i~iwd~~-~~~~~--~~~~~h-~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~--~~~-~~~~~~~~~------~ 143 (229)
++.|.+|+++ +++.. ..+..+ ......++|+|++++++ +...++.|.+|+++. +.. ......... .
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 8899999998 44322 222222 23578899999999655 456789999999864 211 111221111 3
Q ss_pred eEEEEEEcCCCCCEE-EEEECCCcEEEEeCCCC---CceEEEecCCCceEEEEEEeCCCcCEEEEeeC-CCeEEEE--EC
Q psy4653 144 YVMQIVINPKDNNTF-ASASLDRTVKVWQLGSA---SPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD-DRLVKIW--DY 216 (229)
Q Consensus 144 ~v~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~~i~iw--d~ 216 (229)
.+..+.|+| ++.++ +++..++.|.+|++... ..+..+..+...+..++| ++++++|++++. ++.|.+| |.
T Consensus 241 ~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~--spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 241 GAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL--DPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE--CTTSSEEEEEETTTTEEEEEEECT
T ss_pred cceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE--CCCCCEEEEEEcCCCcEEEEEEeC
Confidence 477899998 57755 66778999999998632 344455555556778888 456667777665 5999999 55
Q ss_pred CCCeEE
Q psy4653 217 QNKTCV 222 (229)
Q Consensus 217 ~~~~~~ 222 (229)
++++..
T Consensus 318 ~tg~l~ 323 (347)
T 3hfq_A 318 TSGKLS 323 (347)
T ss_dssp TTCCEE
T ss_pred CCCeEE
Confidence 566544
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.1e-19 Score=158.58 Aligned_cols=208 Identities=9% Similarity=0.082 Sum_probs=152.9
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----cc
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-----LE 90 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-----~~ 90 (229)
..|.+++|+|+ ..++.+ .++.|.+||+.+++.... ..+...+.++.|+|+|+.|+.+ .|+.|.+||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 666655 469999999998866444 3445578889999999999985 689999999988 76
Q ss_pred eEEEeccCCCc--------------eeEEEEcCCCCEEEEEe---------------------------------CCCcE
Q psy4653 91 RFHSFEAHSDY--------------VRCVAVHPTQPFLLTSS---------------------------------DDMLI 123 (229)
Q Consensus 91 ~~~~~~~h~~~--------------i~~v~~~~~~~~~~s~~---------------------------------~d~~v 123 (229)
.......+... +.++.|+|++++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 65544433332 48999999999999887 45789
Q ss_pred EEEecCCceeeeeee-ecceeeEEEEEEcCCCCCEEEEEECCC-----cEEEEeCCCCCceEEEe--cCCC---ceEEEE
Q psy4653 124 KLWNWEKAWACQQVF-EGHTHYVMQIVINPKDNNTFASASLDR-----TVKVWQLGSASPNFTLE--GHEK---GVNCVD 192 (229)
Q Consensus 124 ~lwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~--~h~~---~v~~~~ 192 (229)
++||+..+....... ..|...+..+.|+| ++..+++++.|+ .|++||+.+++....+. .+.. .+..+.
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 999998764322211 24667789999998 688888887776 99999998874333332 2221 235667
Q ss_pred EEeCCCcCEEEEeeCCCeEEEEECC-CCeEEEeeccC
Q psy4653 193 YYHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLESG 228 (229)
Q Consensus 193 ~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~ 228 (229)
|.+..++.+|++++.|+.++||+++ +++.+..++.+
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~ 353 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence 7431155688999999999999986 56666766543
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=5.5e-19 Score=140.90 Aligned_cols=203 Identities=11% Similarity=0.037 Sum_probs=146.5
Q ss_pred ceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecC------cCeEEEEEcCCCCEEEEEeCC-----------
Q psy4653 17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCD------LPVRAAKFVPRKNWIVTGSDD----------- 78 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~sg~~d----------- 78 (229)
.+..++|+|+++.++++ ..++.|.+||+.+++.+..+.... ..+..+.|+|++++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 57899999999877655 468999999999998877665432 237889999999999998865
Q ss_pred -CeEEEEECCCcce---EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-------------
Q psy4653 79 -MQVCVFNYNTLER---FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH------------- 141 (229)
Q Consensus 79 -~~i~iwd~~~~~~---~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~------------- 141 (229)
+.|.+||+++++. +..+. +...+.+++|+|+++ +++++. .|.+||+...........+.
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence 8999999987543 33333 334688999999999 555543 49999987653322211110
Q ss_pred ------------------------------------------------------eeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653 142 ------------------------------------------------------THYVMQIVINPKDNNTFASASLDRTV 167 (229)
Q Consensus 142 ------------------------------------------------------~~~v~~~~~~~~~~~~l~s~~~d~~i 167 (229)
...+..+.++|.++.+++++ ++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence 00233455666356777766 8899
Q ss_pred EEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
.+||+.+++.+..+... ..+.+++|. +++.+|++++.++.|++||.++++.+.+++.+
T Consensus 278 ~~~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANLD-HTYYCVAFD--KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEETTTTEEEEEEECS-SCCCEEEEC--SSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEECccCeEEEEEcCC-CCccceEEC--CCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99999988776666543 346678884 45556777888899999999999998887643
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.4e-19 Score=139.24 Aligned_cols=194 Identities=11% Similarity=0.040 Sum_probs=141.0
Q ss_pred cccC-CCceEEEEEccCCCeEEEEEe--cCeEEE--EEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEE
Q psy4653 11 LTAR-SDRVKCCDLHPTEPWMLASLY--NGHVHV--WNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVF 84 (229)
Q Consensus 11 ~~~~-~~~v~~~~~~p~~~~l~~~~~--dg~v~~--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iw 84 (229)
+.+| ...|.+++|+|+++.+++++. ++...+ |+..+++. ..+... ..+..+.|+|+++.|+ +++.++.+.+|
T Consensus 79 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 79 DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEE
Confidence 3344 367899999999999999983 344444 55555553 333322 3588899999999877 78889999999
Q ss_pred ECCC-cceEEEeccCCCceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 85 NYNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 85 d~~~-~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
+++. ......+..+...+.+++|+|+++.++.++ .++.+++|++.........+..|...+..+.|+| ++.+|++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~ 235 (297)
T 2ojh_A 157 SMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVS 235 (297)
T ss_dssp EEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEE
T ss_pred EEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEE
Confidence 8532 234456667788899999999999877665 5899999998633233455566777888999998 678888777
Q ss_pred CC-----------CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCC
Q psy4653 163 LD-----------RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209 (229)
Q Consensus 163 ~d-----------~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 209 (229)
.+ ..|.+||+.+++. +..+.+|...+.+++|. +++.+|++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS--PDGDEFAYVRYFP 293 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC--TTSSEEEEEEECC
T ss_pred cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC--CCCCEEEEEEecc
Confidence 65 5699999987765 34445777788888884 4566777766553
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=6.3e-19 Score=160.15 Aligned_cols=206 Identities=11% Similarity=0.094 Sum_probs=162.2
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-----------cCcCeEEEEEc-CCCCEEEEEeC
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV-----------CDLPVRAAKFV-PRKNWIVTGSD 77 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~sg~~ 77 (229)
.+..|. .+.+.+|+|+++.++.+ .++.|.+||+.+.+. ..+.. +...+.++.|+ |+|+.|++++
T Consensus 240 ~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~- 315 (1045)
T 1k32_A 240 KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS- 315 (1045)
T ss_dssp ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred EecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence 345554 57788999999988887 599999999955443 33332 22358899999 9999998887
Q ss_pred CCeEEEEECCCcceEEEeccCCC-ceeEEEEcCCCCEEEEEeCCCcEE-EEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653 78 DMQVCVFNYNTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIK-LWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155 (229)
Q Consensus 78 d~~i~iwd~~~~~~~~~~~~h~~-~i~~v~~~~~~~~~~s~~~d~~v~-lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (229)
++.|.+|+...++.. .+..|.. .+..++|+ +++.++.++.+..+. +||+.... ...+. +|...+..+.|+| ++
T Consensus 316 ~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~~~l~-~~~~~~~~~~~Sp-DG 390 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-AEKFE-ENLGNVFAMGVDR-NG 390 (1045)
T ss_dssp TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-EEECC-CCCCSEEEEEECT-TS
T ss_pred cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-ceEec-CCccceeeeEECC-CC
Confidence 889999999876643 4566777 89999999 999999888888888 89987653 23333 6777889999998 78
Q ss_pred CEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC----------eEEEEECCCCeEEEee
Q psy4653 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR----------LVKIWDYQNKTCVQTL 225 (229)
Q Consensus 156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~----------~i~iwd~~~~~~~~~~ 225 (229)
..|++++.++.|++||+.+++......+|...+.+++|+ +++++|++++.++ .|++||+.+++ +..+
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S--pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l 467 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS--DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA 467 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC--TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC--CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe
Confidence 999999999999999999888777777888888889984 5667788777654 89999999887 4554
Q ss_pred cc
Q psy4653 226 ES 227 (229)
Q Consensus 226 ~~ 227 (229)
..
T Consensus 468 ~~ 469 (1045)
T 1k32_A 468 TT 469 (1045)
T ss_dssp SC
T ss_pred eC
Confidence 43
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=8.8e-18 Score=134.45 Aligned_cols=210 Identities=10% Similarity=0.151 Sum_probs=142.1
Q ss_pred cCCCceEEEEEccCCCeEEEEEe---cCeEEEEEcCCCCe--EEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLY---NGHVHVWNHETNQN--VKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNY 86 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~ 86 (229)
.+......++|+|+++ |++++. ++.|.+||+.+++. +..+..+...+..+.|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4456788899999999 666654 68999999987653 333344566788999999999888887 6789999998
Q ss_pred CC-c--ceEEEecc---------CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee--eeecc-eeeEEEEEEc
Q psy4653 87 NT-L--ERFHSFEA---------HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ--VFEGH-THYVMQIVIN 151 (229)
Q Consensus 87 ~~-~--~~~~~~~~---------h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~--~~~~~-~~~v~~~~~~ 151 (229)
.. + +.+..+.. +...+.+++|+|+++++++...++.|.+|++........ .+..+ ...+..+.|+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 63 2 23333321 122478999999999666777789999999973222211 11111 2245678999
Q ss_pred CCCCC-EEEEEECCCcEEEEeCCC--CCc--eEEEecCC------CceEEEEEEeCCCcCEE-EEeeCCCeEEEEECC--
Q psy4653 152 PKDNN-TFASASLDRTVKVWQLGS--ASP--NFTLEGHE------KGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQ-- 217 (229)
Q Consensus 152 ~~~~~-~l~s~~~d~~i~~wd~~~--~~~--~~~~~~h~------~~v~~~~~~~~~~~~~l-~s~s~d~~i~iwd~~-- 217 (229)
| ++. +++++..++.|.+|++.. ++. +..+.... ..+..++|. +++++| ++...++.|.+|++.
T Consensus 196 p-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s--pdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 196 P-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS--HDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC--TTSCEEEEEEETTTEEEEEEECGG
T ss_pred C-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC--CCCCEEEEEeCCCCEEEEEEECCC
Confidence 8 577 455566789999999874 322 22333222 236778884 456655 566779999999997
Q ss_pred -CCeEEEeec
Q psy4653 218 -NKTCVQTLE 226 (229)
Q Consensus 218 -~~~~~~~~~ 226 (229)
+.+.+..+.
T Consensus 273 g~~~~~~~~~ 282 (347)
T 3hfq_A 273 GHLTLIQQIS 282 (347)
T ss_dssp GCEEEEEEEE
T ss_pred CcEEEeEEEe
Confidence 234555544
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.8e-18 Score=147.83 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=142.6
Q ss_pred CCceEEEEEccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC---CCeEEEEECCC-
Q psy4653 15 SDRVKCCDLHPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD---DMQVCVFNYNT- 88 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~- 88 (229)
..+|.+++|+|||+.|+.++. ||++.||++.+++..+ +..+. ..+..+.|+|+ +++++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999876 9999999997665544 33344 47899999998 78887765 44556655432
Q ss_pred --cceEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-
Q psy4653 89 --LERFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD- 164 (229)
Q Consensus 89 --~~~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d- 164 (229)
+... .+... ..+...+|+|+++. +++++.++.+.+||+..+. ...+...+. ..+.|+| ++..+++++.|
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~~~l~~~~~---~~~~~sp-DG~~la~~~~~~ 171 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-LRELARLPG---FGFVSDI-RGDLIAGLGFFG 171 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-EEEEEEESS---CEEEEEE-ETTEEEEEEEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-EEEeecCCC---ceEEECC-CCCEEEEEEEcC
Confidence 2222 33222 23446688888763 3444445555699997663 333333222 6788998 78999988877
Q ss_pred ---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC--eEEEEECCCCeEEEeecc
Q psy4653 165 ---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 165 ---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~ 227 (229)
..|++||+.+++.. .+..|...+...+| +++++.|+++..++ .|++||+.+++.. .++.
T Consensus 172 ~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLR-VFDSGEGSFSSASI--SPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp TTEEEEEEEETTTCCCE-EECCSSCEEEEEEE--CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCeEEEEEcCCCCCce-EeecCCCccccceE--CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 78999999877654 67788888888888 45677888888888 8999999998876 5543
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=8e-19 Score=153.34 Aligned_cols=205 Identities=8% Similarity=0.014 Sum_probs=143.7
Q ss_pred hcccCCC---ceEEEEEccCCCeEEEEEec---------CeEEEEEcCCCCeEEEEEe---cCcCeEEEEEcCCCCEEEE
Q psy4653 10 KLTARSD---RVKCCDLHPTEPWMLASLYN---------GHVHVWNHETNQNVKSFEV---CDLPVRAAKFVPRKNWIVT 74 (229)
Q Consensus 10 ~~~~~~~---~v~~~~~~p~~~~l~~~~~d---------g~v~~wd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s 74 (229)
.+.+|.. .|.+++|||||+.|++++.+ +.+.+||+.+++. ..+.. +...+..+.|+|+|+.|+.
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence 3444543 49999999999999998764 7889999999876 33322 2234788999999999999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCce------------------eEEEEcCCCCEEEEEeCCC---------------
Q psy4653 75 GSDDMQVCVFNYNTLERFHSFEAHSDYV------------------RCVAVHPTQPFLLTSSDDM--------------- 121 (229)
Q Consensus 75 g~~d~~i~iwd~~~~~~~~~~~~h~~~i------------------~~v~~~~~~~~~~s~~~d~--------------- 121 (229)
++. +.|.+||..+++.......+...+ .+++|+|+++.|+.++.|+
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 876 789999998887665555443333 7899999999998887543
Q ss_pred -------------------cEEEEecCCceeeeeeeec------ceeeEEEEEEcCCCCCEEEEEEC----CCcEEEEeC
Q psy4653 122 -------------------LIKLWNWEKAWACQQVFEG------HTHYVMQIVINPKDNNTFASASL----DRTVKVWQL 172 (229)
Q Consensus 122 -------------------~v~lwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~ 172 (229)
.|++||+..... ...+.. +...+..+.|+| ++.++++.+. +..|++||+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEET
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeC
Confidence 789999876542 222332 356789999999 6777766643 358999999
Q ss_pred CCCCceEEEecC-CCceE----EEEEEeCCCcCEEEE--eeCCC------eEEEEE-CCCCe
Q psy4653 173 GSASPNFTLEGH-EKGVN----CVDYYHGGDKPYLIS--GADDR------LVKIWD-YQNKT 220 (229)
Q Consensus 173 ~~~~~~~~~~~h-~~~v~----~~~~~~~~~~~~l~s--~s~d~------~i~iwd-~~~~~ 220 (229)
.+++....+..+ ...+. .++|++ +++.|+. +..|+ .|.+|| ..+++
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSK--DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECT--TSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcC--CCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 888766555433 33332 567744 5554443 55677 566677 34443
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=6.6e-18 Score=134.61 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=117.6
Q ss_pred EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccC
Q psy4653 21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAH 98 (229)
Q Consensus 21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h 98 (229)
+++++++..+++++.++.|.+||+.+++.+..+.... .....+.|+|+++.+ +++..++.|.+||+++++.+..+..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 4678888889999999999999999998888776543 257889999999865 55567899999999998877666532
Q ss_pred C------CceeEEEEcCCCCEEEEEeCC------------CcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEE
Q psy4653 99 S------DYVRCVAVHPTQPFLLTSSDD------------MLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTF 158 (229)
Q Consensus 99 ~------~~i~~v~~~~~~~~~~s~~~d------------~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l 158 (229)
. ..+.+++|+|+++++++++.+ +.|.+||+..+... ...+.. ...+..+.|+| ++.++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~l~ 162 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD-DGSLY 162 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT-TSCEE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECC-CCcEE
Confidence 2 237899999999999888765 89999999764221 222322 23467788998 56644
Q ss_pred EEEECCCcEEEEeCCCCCceEEEe
Q psy4653 159 ASASLDRTVKVWQLGSASPNFTLE 182 (229)
Q Consensus 159 ~s~~~d~~i~~wd~~~~~~~~~~~ 182 (229)
+ ++ +.|.+||..+++....+.
T Consensus 163 ~-~~--~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 163 V-AG--PDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp E-ES--SSEEEECTTTCCEEEEEC
T ss_pred E-cc--CcEEEEeCCCCceecccc
Confidence 4 43 349999998877666554
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=4e-18 Score=148.65 Aligned_cols=198 Identities=12% Similarity=0.095 Sum_probs=141.1
Q ss_pred eEEEEEccCCCeEEEEE---------------------------------ecCeEEEEEcCCCCeEEEEE--ecCcCeEE
Q psy4653 18 VKCCDLHPTEPWMLASL---------------------------------YNGHVHVWNHETNQNVKSFE--VCDLPVRA 62 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~---------------------------------~dg~v~~wd~~~~~~~~~~~--~~~~~v~~ 62 (229)
+.+++|+||++.|++++ .+..|.+||+.+++...... .+...+.+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 68999999999999987 34689999999987654432 23456899
Q ss_pred EEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEEec--cCCC---ceeEEEEcC--CCCEEEEEeCCCcEEEEecCC
Q psy4653 63 AKFVPRKNWIVTGSDDM-----QVCVFNYNTLERFHSFE--AHSD---YVRCVAVHP--TQPFLLTSSDDMLIKLWNWEK 130 (229)
Q Consensus 63 ~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~--~h~~---~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~ 130 (229)
+.|+|+|+.|++++.++ .|.+||+++++....+. .+.. .+..+.|+| +++++++++.|+.++||+++.
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~ 342 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT 342 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence 99999999999887775 89999999884433332 2222 246789999 999999999999999998763
Q ss_pred ceeeeeeeecceeeEEE-EEEcCCCCCEEE-EEECCC----cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE
Q psy4653 131 AWACQQVFEGHTHYVMQ-IVINPKDNNTFA-SASLDR----TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS 204 (229)
Q Consensus 131 ~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~-s~~~d~----~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 204 (229)
.......+..+...+.. +.|+| ++..++ +++.++ .|..||+.++. ...+. |...+.+++|+ +++++|+.
T Consensus 343 ~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s--pdg~~l~~ 417 (706)
T 2z3z_A 343 TGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLS--PDGSAIID 417 (706)
T ss_dssp TSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEEC--TTSSEEEE
T ss_pred CCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEEC--CCCCEEEE
Confidence 22334445556666766 78998 566555 444554 56666776654 33333 56678888884 45555655
Q ss_pred e-eCC---CeEEEEECCCCe
Q psy4653 205 G-ADD---RLVKIWDYQNKT 220 (229)
Q Consensus 205 ~-s~d---~~i~iwd~~~~~ 220 (229)
. +.+ +.|.+||..+++
T Consensus 418 ~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 418 IFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCCcEEEEEECCCCe
Confidence 4 433 569999999887
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=8.9e-19 Score=159.18 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=161.5
Q ss_pred CCCceEEEEEc-cCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc-CeEEEEEcCCCCEEEEEeCCCeEE-EEECCCcc
Q psy4653 14 RSDRVKCCDLH-PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL-PVRAAKFVPRKNWIVTGSDDMQVC-VFNYNTLE 90 (229)
Q Consensus 14 ~~~~v~~~~~~-p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~d~~i~-iwd~~~~~ 90 (229)
|...|.+++|+ |+++.+++++ ++.|.+|+..+++... +..+.. .+..+.|+ +++.|+.++.++.+. +||.++++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 45579999999 9999998887 8999999999876543 344444 78999999 999999998888888 99998765
Q ss_pred eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC-----
Q psy4653 91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR----- 165 (229)
Q Consensus 91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----- 165 (229)
.. .+..|...+..++|+|+++.+++++.++.|++||+..+ ....+..+|...+..+.|+| ++.+|++++.++
T Consensus 371 ~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 371 AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTC
T ss_pred ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECC-CCCeEEEEecCcccccc
Confidence 53 44477788999999999999999999999999999866 34555567888889999998 688888877654
Q ss_pred -----cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 166 -----TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 166 -----~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
.|++||+.+++ ...+..|...+..++| ++++++|+.++.++..++|+.....
T Consensus 448 ~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~--spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF--DADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp SCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE--CTTSCEEEEEESCCCCCEECSSSSC
T ss_pred CCCCCeEEEEECCCCc-EEEeeCCCcccCCceE--cCCCCEEEEEecccCCcCcchhccc
Confidence 99999998776 6667778777888888 4566789999998888888876443
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=1.3e-17 Score=132.15 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=139.2
Q ss_pred CeEEEEEecCeEEEEEcCCCCeEEEEEecCc--CeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccC-----C
Q psy4653 28 PWMLASLYNGHVHVWNHETNQNVKSFEVCDL--PVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAH-----S 99 (229)
Q Consensus 28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h-----~ 99 (229)
+++++++.++.|.+||+.+++.+..+..... .+..+.|+|+++.+ +++..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4688889999999999999988887764432 47889999999865 55666789999999998877665432 1
Q ss_pred CceeEEEEcCCCCEEEEEe------------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653 100 DYVRCVAVHPTQPFLLTSS------------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167 (229)
Q Consensus 100 ~~i~~v~~~~~~~~~~s~~------------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 167 (229)
..+..++|+|+++++++++ .++.|.+||+...... ..+.. ...+..+.|+| ++.+++.+ ++.|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-KAFEA-PRQITMLAWAR-DGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-EEEEC-CSSCCCEEECT-TSSCEEEE--SSSE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE-EEEeC-CCCcceeEECC-CCCEEEEe--CCeE
Confidence 2577899999999888775 5799999999776433 33332 23456778998 56666665 6889
Q ss_pred EEEeCCCCCceEEEecCC--------------------------------------------------------------
Q psy4653 168 KVWQLGSASPNFTLEGHE-------------------------------------------------------------- 185 (229)
Q Consensus 168 ~~wd~~~~~~~~~~~~h~-------------------------------------------------------------- 185 (229)
.+||+.+++....+..+.
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 999998765444332211
Q ss_pred ----CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 186 ----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 186 ----~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
..+..++| ++++.+|+++ ++.|.+||+++++.+..+..
T Consensus 237 ~~~~~~~~~~~~--s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 278 (337)
T 1pby_B 237 RIMDVFYFSTAV--NPAKTRAFGA--YNVLESFDLEKNASIKRVPL 278 (337)
T ss_dssp EECSSCEEEEEE--CTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred CCCCCceeeEEE--CCCCCEEEEe--CCeEEEEECCCCcCcceecC
Confidence 12234555 4456677776 78999999999988877653
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=158.31 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=144.4
Q ss_pred EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc---CeEEEEEcCCCCEEEEEeC---------CCeEEEEEC
Q psy4653 19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL---PVRAAKFVPRKNWIVTGSD---------DMQVCVFNY 86 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~sg~~---------d~~i~iwd~ 86 (229)
..++|+|++. +++.+.|+.|++||+.+++....+..+.. .+.++.|+|+|++|+.++. ++.|.+||+
T Consensus 19 ~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 4789999995 55555799999999999988766654432 4899999999999998876 789999999
Q ss_pred CCcceE--EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE-----------------EE
Q psy4653 87 NTLERF--HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----------------MQ 147 (229)
Q Consensus 87 ~~~~~~--~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-----------------~~ 147 (229)
++++.+ ..+ ...+..++|||+|+.++.+. ++.|++||+..+........++...+ ..
T Consensus 98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 988663 222 24688999999999998875 78999999976543222223332222 37
Q ss_pred EEEcCCCCCEEEEEECCC----------------------------------cEEEEeCCCCCce--EE------EecCC
Q psy4653 148 IVINPKDNNTFASASLDR----------------------------------TVKVWQLGSASPN--FT------LEGHE 185 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~--~~------~~~h~ 185 (229)
+.|+| |+..|++++.|. .|++||+.+++.. .. +.+|.
T Consensus 174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 89999 788999887652 7889999876542 11 23577
Q ss_pred CceEEEEEEeCCCcCEEEEeeCC----CeEEEEE----CCCCeEEEee
Q psy4653 186 KGVNCVDYYHGGDKPYLISGADD----RLVKIWD----YQNKTCVQTL 225 (229)
Q Consensus 186 ~~v~~~~~~~~~~~~~l~s~s~d----~~i~iwd----~~~~~~~~~~ 225 (229)
..+..++|++ ++.++++.... ..|.+|| ..++++...+
T Consensus 253 ~~~~~~~~Sp--D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 253 YYFSWLTWVT--DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp EEEEEEEESS--SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred ceEEEeEEeC--CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7788889854 45566664432 3488899 8777765444
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=8.1e-18 Score=143.86 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=142.5
Q ss_pred hcccCC-CceEEEEEccCCCeEEEEEe---cCeEEEEEcCC---CCeEEEEEecCcCeEEEEEcCCCC--EEEEEeCCCe
Q psy4653 10 KLTARS-DRVKCCDLHPTEPWMLASLY---NGHVHVWNHET---NQNVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQ 80 (229)
Q Consensus 10 ~~~~~~-~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~---~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~ 80 (229)
.+..|. ..|.++.|+|+ +.++++.. +....+|.+.. +... .+.. ........|+|+++ .+++++.+ .
T Consensus 58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~-~ 133 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATED-R 133 (582)
T ss_dssp ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSS-C
T ss_pred eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCC-C
Confidence 345555 58999999999 77776664 45556655433 2222 2221 22345667888875 34444444 4
Q ss_pred EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC
Q psy4653 81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (229)
+.+||+++++.......+ . .+++|+|+|+.+++++.+ +.|++||+..+.. ..+..|...+..+.|+| |+.
T Consensus 134 ~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~Sp-DG~ 207 (582)
T 3o4h_A 134 VALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISP-GMK 207 (582)
T ss_dssp EEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECT-TSC
T ss_pred ceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECC-CCC
Confidence 559999887654444333 3 789999999999988777 7899999876532 34567778889999999 788
Q ss_pred EEEEEECCC--cEEEEeCCCCCceEEEecCCCceEEEE--------EEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653 157 TFASASLDR--TVKVWQLGSASPNFTLEGHEKGVNCVD--------YYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223 (229)
Q Consensus 157 ~l~s~~~d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 223 (229)
.|+++..++ .|++||+.+++.. .+.+|...+..++ |+ +++.++++++.|+.++||++ ++++.
T Consensus 208 ~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s--pdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 208 VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYL--PDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEEC--TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEc--CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 999888888 8999999888776 6677766666555 74 45578999999999999999 76654
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=1.6e-17 Score=146.04 Aligned_cols=200 Identities=11% Similarity=0.106 Sum_probs=144.9
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC-----eEEEEEcCCCCEEEEEeCC---------C
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----VRAAKFVPRKNWIVTGSDD---------M 79 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~sg~~d---------~ 79 (229)
+.....++.|+|++.+++++ ||.|++||+.+++....+..+... ...+.|+|+|+.|+.++.+ +
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 34457789999999888776 999999999999987776655422 2347899999999998876 5
Q ss_pred eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE--------------
Q psy4653 80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-------------- 145 (229)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-------------- 145 (229)
.+.+||+++++. ..+..|...+...+|||+|+.++.+. |+.|++||+..+........++...+
T Consensus 93 ~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 667999998765 44666778899999999999988774 68999999876543332333332222
Q ss_pred ---EEEEEcCCCCCEEEEEECCC------------------------------------cEEEEeCCC---CC--ceEEE
Q psy4653 146 ---MQIVINPKDNNTFASASLDR------------------------------------TVKVWQLGS---AS--PNFTL 181 (229)
Q Consensus 146 ---~~~~~~~~~~~~l~s~~~d~------------------------------------~i~~wd~~~---~~--~~~~~ 181 (229)
..+.|+| |+..|+.++.|. +|++||+.+ +. ....+
T Consensus 171 ~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 171 SAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred CCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 2478999 788888876332 478888877 63 23344
Q ss_pred e------cCCCceEEEEEEeCCCcCEEEEee----CCCeEEEEECCCCe
Q psy4653 182 E------GHEKGVNCVDYYHGGDKPYLISGA----DDRLVKIWDYQNKT 220 (229)
Q Consensus 182 ~------~h~~~v~~~~~~~~~~~~~l~s~s----~d~~i~iwd~~~~~ 220 (229)
. +|...+..++|++. ++.++... .+..|.+||+.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~wspd--g~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQ--ERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEET--TEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCccCCCCCeEEEEEEEeCC--CeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 3 26667888999764 44444432 34479999998887
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=7.7e-16 Score=123.83 Aligned_cols=199 Identities=12% Similarity=0.081 Sum_probs=132.6
Q ss_pred CCCceEEEEEccCCCeEEEEEec----CeEEEEEcCC--CCeE--EEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYN----GHVHVWNHET--NQNV--KSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVF 84 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~d----g~v~~wd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iw 84 (229)
+......++|+|+++.|++++.+ +.|.+|++.. ++.. ............+.+ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999998875 7999998865 4432 222323445667777 777776665 67899999
Q ss_pred ECCCcceEEEe------cc--------CCCceeEEEEcCCCCEEEEE-eCCCcEEEEecCCcee------e------eee
Q psy4653 85 NYNTLERFHSF------EA--------HSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWA------C------QQV 137 (229)
Q Consensus 85 d~~~~~~~~~~------~~--------h~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~~~~------~------~~~ 137 (229)
++.....+..+ .+ +...+.+++|+|++++++++ ..++.|.+|++..... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 98754332211 11 12335789999999966555 4588999999865431 1 111
Q ss_pred eecceeeEEEEEEcCCCCCEEEEEE-CCCcEEEEeCCCCCc--eEEEe---cCCCceEEEEEEeCCCcCEEEEee-C-CC
Q psy4653 138 FEGHTHYVMQIVINPKDNNTFASAS-LDRTVKVWQLGSASP--NFTLE---GHEKGVNCVDYYHGGDKPYLISGA-D-DR 209 (229)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~--~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s-~-d~ 209 (229)
...+...+..+.|+| ++.+++.++ .++.|.+||+.++.. +..+. .+......++| ++++++|+++. . ++
T Consensus 206 ~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~--spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 206 KVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL--SPDGKYLYASNRLKAD 282 (361)
T ss_dssp ECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE--CTTSSEEEEEECSSSC
T ss_pred ecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE--CCCCCEEEEECCCCCC
Confidence 122234467899998 677666555 789999999976542 22232 23344667888 45666675555 4 58
Q ss_pred eEEEEECC
Q psy4653 210 LVKIWDYQ 217 (229)
Q Consensus 210 ~i~iwd~~ 217 (229)
.|.+|++.
T Consensus 283 ~i~v~~~~ 290 (361)
T 3scy_A 283 GVAIFKVD 290 (361)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 99999996
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=6.5e-18 Score=147.69 Aligned_cols=199 Identities=9% Similarity=0.016 Sum_probs=137.6
Q ss_pred ceEEEEEccCCCeEEEEEe---------cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 17 RVKCCDLHPTEPWMLASLY---------NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~---------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.|.+++|||||+.|+.++. ++.|++||+.+++.+..... ...+..+.|+|+|+.|+.+. ++.|.+||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4899999999999998876 78999999999876211111 24688899999999999885 7899999998
Q ss_pred CcceEEEe-ccCCCce-----------------eEEEEcCCCCEEEEEeCCC----------------------------
Q psy4653 88 TLERFHSF-EAHSDYV-----------------RCVAVHPTQPFLLTSSDDM---------------------------- 121 (229)
Q Consensus 88 ~~~~~~~~-~~h~~~i-----------------~~v~~~~~~~~~~s~~~d~---------------------------- 121 (229)
+++..... .++...| .+++|+|+++.|+.++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 87654332 2222222 4899999999999887552
Q ss_pred ------cEEEEecCCceee--e-----eeeecceeeEEEEEEcCCCCCEEEEEECC----CcEEEEe----CCCCCceEE
Q psy4653 122 ------LIKLWNWEKAWAC--Q-----QVFEGHTHYVMQIVINPKDNNTFASASLD----RTVKVWQ----LGSASPNFT 180 (229)
Q Consensus 122 ------~v~lwd~~~~~~~--~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~~wd----~~~~~~~~~ 180 (229)
.|++||+...... . ..+.+|...+..+.|+|+ +.++++.... ..|.+|| ..+++....
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7889998765321 1 113467888999999994 6666664422 2488899 766654433
Q ss_pred E----ecCCCceE-----EEEEEeCCCcCEEE--EeeCCC--eEEEEECCCCe
Q psy4653 181 L----EGHEKGVN-----CVDYYHGGDKPYLI--SGADDR--LVKIWDYQNKT 220 (229)
Q Consensus 181 ~----~~h~~~v~-----~~~~~~~~~~~~l~--s~s~d~--~i~iwd~~~~~ 220 (229)
+ .+|...+. ...|++ +++.|+ +...+| .|.+||..+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSY--DAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECT--TSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred EecccccCCceEccccCCccEECC--CCCeEEEEEEccCCceEEEEEECCCCc
Confidence 3 35655555 677754 444333 344555 46667776665
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=6.9e-16 Score=123.02 Aligned_cols=209 Identities=11% Similarity=0.100 Sum_probs=153.1
Q ss_pred CCceEEEEEccCCCeEEEEEec------------------------CeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCC
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYN------------------------GHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRK 69 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~d------------------------g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 69 (229)
-..|.+++++|+++++++...+ +.|.+||..+++.+..+... -.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999988887766 47999999999887665422 2367899999999
Q ss_pred CEEEEEeCCCeEEEEECCCcc-eEEEe---------ccCCCceeEEEEcC-CCCEEEEEe-CCCcEEEEecCCceeeeee
Q psy4653 70 NWIVTGSDDMQVCVFNYNTLE-RFHSF---------EAHSDYVRCVAVHP-TQPFLLTSS-DDMLIKLWNWEKAWACQQV 137 (229)
Q Consensus 70 ~~l~sg~~d~~i~iwd~~~~~-~~~~~---------~~h~~~i~~v~~~~-~~~~~~s~~-~d~~v~lwd~~~~~~~~~~ 137 (229)
+++++...++.|..||.+... .+..+ ..+......++++| ++.++++.+ .++.|++||.... ....
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~--~~~~ 180 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK--FVTQ 180 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC--EEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC--EEEE
Confidence 999998889999999986542 34444 23344678999999 788888886 6899999995432 2223
Q ss_pred ee----------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe--cCCCceEEEEEEeCC-----CcC
Q psy4653 138 FE----------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE--GHEKGVNCVDYYHGG-----DKP 200 (229)
Q Consensus 138 ~~----------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~~-----~~~ 200 (229)
+. ++......++++|..+.++++...+++|++||..+++.+..+. .+...+..+++.+ + ++.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 32 1223478899998547888888899999999998787777764 3445677777754 1 111
Q ss_pred EEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 201 YLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 201 ~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
..++.+.+..|++||..+++.+.++.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 22233445689999999999888863
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=8.7e-16 Score=124.07 Aligned_cols=204 Identities=7% Similarity=0.013 Sum_probs=137.6
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcC-CCCeEEEEEec-CcCeEEEEEcCCCCE--EEEEe-------------C
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHE-TNQNVKSFEVC-DLPVRAAKFVPRKNW--IVTGS-------------D 77 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~sg~-------------~ 77 (229)
...+..++|+|+++.|++++.+ .|.+|++. +++........ .....++.|+|+|++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3468899999999999988887 99999997 77665433321 123556889999994 55553 6
Q ss_pred CCeEEEEECC-CcceEEEec----cCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecC-Cceee-eeeee--cceeeEEE
Q psy4653 78 DMQVCVFNYN-TLERFHSFE----AHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWE-KAWAC-QQVFE--GHTHYVMQ 147 (229)
Q Consensus 78 d~~i~iwd~~-~~~~~~~~~----~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~-~~~~~-~~~~~--~~~~~v~~ 147 (229)
++.+.+|+++ .++....+. .+...+.+++|+|++++++++.. ++.|++||+. .+... ...+. .|...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999987 354433332 24567899999999998877654 6899999997 44221 12222 23445788
Q ss_pred EEEcCCCCCEEEEEE-CCCcEEEEeCC--CCCce---EEEec-------CCC------ceEEEE-EEeCCCcCEEEEeeC
Q psy4653 148 IVINPKDNNTFASAS-LDRTVKVWQLG--SASPN---FTLEG-------HEK------GVNCVD-YYHGGDKPYLISGAD 207 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~-~d~~i~~wd~~--~~~~~---~~~~~-------h~~------~v~~~~-~~~~~~~~~l~s~s~ 207 (229)
+.|+| ++.+++.++ .++.|.+|++. +++.. ..+.. |.. .+..++ | ++++++|+++..
T Consensus 198 ~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--spdG~~l~v~~~ 274 (365)
T 1jof_A 198 VAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL--TFSGKYMFASSR 274 (365)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE--CTTSSEEEEEEE
T ss_pred eEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE--CCCCCEEEEECC
Confidence 99998 677777666 57899999875 34432 12221 121 467788 7 456666666553
Q ss_pred -CC-----eEEEEECC-CCeEE
Q psy4653 208 -DR-----LVKIWDYQ-NKTCV 222 (229)
Q Consensus 208 -d~-----~i~iwd~~-~~~~~ 222 (229)
+. .|.+|++. +++..
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEE
T ss_pred CCCCCCCCeEEEEEECCCCCEE
Confidence 22 89999996 56543
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=2.4e-15 Score=120.92 Aligned_cols=204 Identities=10% Similarity=0.074 Sum_probs=133.3
Q ss_pred CCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEE---Eec-----------CcCeEEEEEcCCCCEEEEE-eC
Q psy4653 14 RSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSF---EVC-----------DLPVRAAKFVPRKNWIVTG-SD 77 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~sg-~~ 77 (229)
+......+++ +++.|+++. .++.|.+|++.+...+... ..+ ...+.++.|+|++++|+++ ..
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 4455666777 888787776 5889999999764332211 111 1235789999999966554 45
Q ss_pred CCeEEEEECCCcce------E-------EEeccCCCceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceee-eeee---e
Q psy4653 78 DMQVCVFNYNTLER------F-------HSFEAHSDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWAC-QQVF---E 139 (229)
Q Consensus 78 d~~i~iwd~~~~~~------~-------~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~-~~~~---~ 139 (229)
++.|.+|+++.... + .....+......++|+|+++++++++ .++.|.+||+..+... .... .
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~ 255 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT 255 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence 78999998864331 1 11122345678999999999877666 6899999998754221 1111 2
Q ss_pred cceeeEEEEEEcCCCCCEEEEEEC--CCcEEEEeCC--CCC--ceEEEecCCCceEEEEEEeCCCcCEEEEee-CCCeEE
Q psy4653 140 GHTHYVMQIVINPKDNNTFASASL--DRTVKVWQLG--SAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDRLVK 212 (229)
Q Consensus 140 ~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~--~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~ 212 (229)
.+......+.|+| ++.+|+.+.. ++.|.+|++. +++ .+..+.. ...+..++| ++++++|++++ .++.|.
T Consensus 256 ~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~--spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 256 VNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII--TPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp SCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE--CTTSCEEEEEETTTTEEE
T ss_pred CCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE--CCCCCEEEEEECCCCCEE
Confidence 2233457899998 6777755554 5899999986 333 2333443 345677888 45666777766 679999
Q ss_pred EEEC--CCCeEEE
Q psy4653 213 IWDY--QNKTCVQ 223 (229)
Q Consensus 213 iwd~--~~~~~~~ 223 (229)
+|++ .+++...
T Consensus 332 v~~~d~~~g~~~~ 344 (361)
T 3scy_A 332 IFERDQATGLLTD 344 (361)
T ss_dssp EEEECTTTCCEEE
T ss_pred EEEEECCCCcEee
Confidence 9655 5666544
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=3e-16 Score=135.89 Aligned_cols=203 Identities=7% Similarity=-0.047 Sum_probs=140.6
Q ss_pred CCCceEEEEEccCCCeEEEEEec----------CeEEEEEcCC------CCeEEEEE-ecCcCeEEEEEcCCCCEEEEEe
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYN----------GHVHVWNHET------NQNVKSFE-VCDLPVRAAKFVPRKNWIVTGS 76 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~d----------g~v~~wd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~ 76 (229)
|...+.+++|+|||+.|++++.+ ..|.+||+.+ ++.. .+. .+...+..+.|+|+|+.|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence 66789999999999999998877 5899999998 5543 333 3345677889999999998877
Q ss_pred CC--------CeEEEEECC-Cc---ceEEEeccCCCceeEEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeeeecce
Q psy4653 77 DD--------MQVCVFNYN-TL---ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM--LIKLWNWEKAWACQQVFEGHT 142 (229)
Q Consensus 77 ~d--------~~i~iwd~~-~~---~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~--~v~lwd~~~~~~~~~~~~~~~ 142 (229)
.+ ..|.+||++ ++ +.......|...+..+.|+|++++++++..++ .|.+||+..+ ....+...+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeecccccc
Confidence 54 379999998 56 33333444577899999999999888888888 5666665443 2233333322
Q ss_pred ee--------EEEEEEcCCCCCEEEEEECCCcEEEE--eCCCCCceEEEecCCCceEEE-EEEeCCCcCEEEEeeCCCe-
Q psy4653 143 HY--------VMQIVINPKDNNTFASASLDRTVKVW--QLGSASPNFTLEGHEKGVNCV-DYYHGGDKPYLISGADDRL- 210 (229)
Q Consensus 143 ~~--------v~~~~~~~~~~~~l~s~~~d~~i~~w--d~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~l~s~s~d~~- 210 (229)
.. +..+.++| ++.+++++.. +.+++| |+.++. +..+..|...+..+ ++ .++.-++++++.+..
T Consensus 286 ~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTV--SGTRAVGVAASPRTAY 360 (662)
T ss_dssp BSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred cccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEec--CCCEEEEEEcCCCCCC
Confidence 21 34567776 5788888888 999999 544443 56677776667666 43 444434555566654
Q ss_pred -EEEEECCCCeEEE
Q psy4653 211 -VKIWDYQNKTCVQ 223 (229)
Q Consensus 211 -i~iwd~~~~~~~~ 223 (229)
|.+||..+++...
T Consensus 361 ~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 361 EVVELDTVTGRART 374 (662)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEEECCCCceEE
Confidence 5555666776543
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2.7e-15 Score=116.81 Aligned_cols=200 Identities=17% Similarity=0.250 Sum_probs=144.3
Q ss_pred cCCCceEEEEE-ccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653 13 ARSDRVKCCDL-HPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89 (229)
Q Consensus 13 ~~~~~v~~~~~-~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 89 (229)
+|...+..+++ .+++..+++... ++.|.+|| .+++.+..+... ......+.+.|+++++++...++.|.+||.+ +
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 151 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G 151 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C
Confidence 34457889999 467766666543 89999999 566776665432 2468899999999988888888999999965 4
Q ss_pred ceEEEec--cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653 90 ERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASLDR 165 (229)
Q Consensus 90 ~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~ 165 (229)
+.+..+. .+......+++++++.++++...++.|++||.... ....+. ++...+..+++++ ++.++++...++
T Consensus 152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~ 228 (286)
T 1q7f_A 152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNN 228 (286)
T ss_dssp CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSS
T ss_pred CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCC
Confidence 5555543 34456899999999998888888999999997543 222332 2235678899988 678888887776
Q ss_pred -cEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 166 -TVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 166 -~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
.|.+||.. ++.+..+..+.. .+.++++.+ ++.++++ +.|+.|++|++....+
T Consensus 229 ~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~--~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 229 FNLTIFTQD-GQLISALESKVKHAQCFDVALMD--DGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp CEEEEECTT-SCEEEEEEESSCCSCEEEEEEET--TTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EEEEEECCC-CCEEEEEcccCCCCcceeEEECC--CCcEEEE-CCCCeEEEEEcccccc
Confidence 99999964 555556655433 366788754 5556666 6799999999876543
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=8.3e-15 Score=114.08 Aligned_cols=205 Identities=16% Similarity=0.187 Sum_probs=147.8
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe------cCcCeEEEEEc-CCCCEEEEEeC-CCeEEEE
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV------CDLPVRAAKFV-PRKNWIVTGSD-DMQVCVF 84 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~sg~~-d~~i~iw 84 (229)
++-....+++++|++.++++...++.|.+||.. ++.+..+.. +......+.+. ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988887889999999987 566555542 12357889994 66766666643 7899999
Q ss_pred ECCCcceEEEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEEEE
Q psy4653 85 NYNTLERFHSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASA 161 (229)
Q Consensus 85 d~~~~~~~~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~ 161 (229)
| .+++.+..+.. +.....+++++|++.++++...++.|.+||.... . ...+. ++...+..+++++ ++.++++.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~-~~~~~~~~~~~~p~~i~~~~-~g~l~v~~ 181 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V-LHKFGCSKHLEFPNGVVVND-KQEIFISD 181 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E-EEEEECTTTCSSEEEEEECS-SSEEEEEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E-EEEeCCCCccCCcEEEEECC-CCCEEEEE
Confidence 9 45666665542 3456889999999998888888899999996532 2 22222 3344578899998 57788887
Q ss_pred ECCCcEEEEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCCC-eEEEEECCCCeEEEeec
Q psy4653 162 SLDRTVKVWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADDR-LVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 162 ~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~ 226 (229)
..++.|++||.. +..+..+..+ ...+..+++. +++.++++...++ .|.+||.. ++.+.++.
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d--~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~ 245 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGIN--SNGEILIADNHNNFNLTIFTQD-GQLISALE 245 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEEC--TTCCEEEEECSSSCEEEEECTT-SCEEEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEEC--CCCCEEEEeCCCCEEEEEECCC-CCEEEEEc
Confidence 889999999974 4444555433 3457778874 4556788877776 99999964 55666554
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=9.3e-16 Score=123.90 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=135.0
Q ss_pred eEEEEEccCCCe--EEEEE-------------ecCeEEEEEcC-CCCeEEEEEe----cCcCeEEEEEcCCCCEEEEEeC
Q psy4653 18 VKCCDLHPTEPW--MLASL-------------YNGHVHVWNHE-TNQNVKSFEV----CDLPVRAAKFVPRKNWIVTGSD 77 (229)
Q Consensus 18 v~~~~~~p~~~~--l~~~~-------------~dg~v~~wd~~-~~~~~~~~~~----~~~~v~~~~~~~~~~~l~sg~~ 77 (229)
..+++|+|+++. ++++. .+|.+.+|++. +++....+.. +...+.++.|+|+|++|++++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 556899999995 44442 58999999997 4665444332 3457899999999998877654
Q ss_pred -CCeEEEEECC-Ccce--EEEec--cCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecCC--ceee-----eeeee----
Q psy4653 78 -DMQVCVFNYN-TLER--FHSFE--AHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEK--AWAC-----QQVFE---- 139 (229)
Q Consensus 78 -d~~i~iwd~~-~~~~--~~~~~--~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~--~~~~-----~~~~~---- 139 (229)
++.|.+|+++ +++. +..+. .|......++|+|+++++++++. ++.|.+|+++. +... ...+.
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 6799999998 6653 23333 23567899999999998877765 68999998752 2211 11111
Q ss_pred ccee------eEEEEE-EcCCCCCEEEEEECC-C-----cEEEEeCC-CCCceE---EEecCCCceEEEEEEeCC-CcCE
Q psy4653 140 GHTH------YVMQIV-INPKDNNTFASASLD-R-----TVKVWQLG-SASPNF---TLEGHEKGVNCVDYYHGG-DKPY 201 (229)
Q Consensus 140 ~~~~------~v~~~~-~~~~~~~~l~s~~~d-~-----~i~~wd~~-~~~~~~---~~~~h~~~v~~~~~~~~~-~~~~ 201 (229)
+|.. .+..+. |+| ++.+|+++..+ . +|.+|++. +++... ....+......++|.+.. ++++
T Consensus 245 g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred CcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence 2222 477889 998 67776655532 2 89999986 444332 133344445667776520 3457
Q ss_pred EEEeeC-CCeEEEEECCCC
Q psy4653 202 LISGAD-DRLVKIWDYQNK 219 (229)
Q Consensus 202 l~s~s~-d~~i~iwd~~~~ 219 (229)
|++++. ++.|++|++...
T Consensus 324 l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 324 MAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEECSSSCEEEEEEEETT
T ss_pred EEEEEcCCCeEEEEEEchh
Confidence 877775 599999998765
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=2.3e-16 Score=136.58 Aligned_cols=211 Identities=7% Similarity=0.019 Sum_probs=142.8
Q ss_pred hcccCCCceE---------EEEEc--cCCCe-EEEEEe-cCeEEEEEcC--C-CCeEEEEEe-----cCcCeEEEEEcCC
Q psy4653 10 KLTARSDRVK---------CCDLH--PTEPW-MLASLY-NGHVHVWNHE--T-NQNVKSFEV-----CDLPVRAAKFVPR 68 (229)
Q Consensus 10 ~~~~~~~~v~---------~~~~~--p~~~~-l~~~~~-dg~v~~wd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~ 68 (229)
.+..|...|. +..|+ ||++. |+.+.. +..|.+|++. + ++. ..+.. +...+..+.|+|+
T Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETT
T ss_pred eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCC
Confidence 3555555555 55565 99998 666553 5667777766 3 443 33333 3456889999999
Q ss_pred CCEEEEEeCC----------CeEEEEECCC------cceEEEec-cCCCceeEEEEcCCCCEEEEEeCC--------CcE
Q psy4653 69 KNWIVTGSDD----------MQVCVFNYNT------LERFHSFE-AHSDYVRCVAVHPTQPFLLTSSDD--------MLI 123 (229)
Q Consensus 69 ~~~l~sg~~d----------~~i~iwd~~~------~~~~~~~~-~h~~~i~~v~~~~~~~~~~s~~~d--------~~v 123 (229)
|+.|+.++.+ ..|.+||+++ ++. ..+. .+...+..++|+|+++.|+.++.+ ..|
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 9999988876 5799999987 544 4444 556778899999999999877654 379
Q ss_pred EEEecC-Cc--eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC--cEEEEeCCCCCceEEEecCCCc--------eEE
Q psy4653 124 KLWNWE-KA--WACQQVFEGHTHYVMQIVINPKDNNTFASASLDR--TVKVWQLGSASPNFTLEGHEKG--------VNC 190 (229)
Q Consensus 124 ~lwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~h~~~--------v~~ 190 (229)
++||+. .+ .....+..++...+..+.|+| ++.+++++..++ .|.+||+.+++.......+... +..
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 999998 34 134455555567788999998 567888888888 5556666555433222222211 345
Q ss_pred EEEEeCCCcCEEEEeeCCCeEEEE--ECCCCeEEEeecc
Q psy4653 191 VDYYHGGDKPYLISGADDRLVKIW--DYQNKTCVQTLES 227 (229)
Q Consensus 191 ~~~~~~~~~~~l~s~s~d~~i~iw--d~~~~~~~~~~~~ 227 (229)
++| .+++.++++++. +.++|| |..+++ +..++.
T Consensus 299 ~~~--~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~ 333 (662)
T 3azo_A 299 FAP--LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAG 333 (662)
T ss_dssp EEE--CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCS
T ss_pred EeE--eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecC
Confidence 666 345668888888 999999 555555 555554
No 169
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=6.1e-15 Score=128.98 Aligned_cols=210 Identities=5% Similarity=0.009 Sum_probs=143.7
Q ss_pred cCCCceEEEEEccCCCeEEEEEecC-----eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe-------
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNG-----HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ------- 80 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg-----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~------- 80 (229)
+|+..+..++|||||+.|+.+..++ .|++||+.+++...... ....+..+.|+|+|+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555789999999999998876543 89999999998765322 2223678999999999998887765
Q ss_pred ---------EEEEECCCcce----EEEeccCCCceeEEEEcCCCCEEEEEeC-----CCcEEEEecCC------ceeeee
Q psy4653 81 ---------VCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTSSD-----DMLIKLWNWEK------AWACQQ 136 (229)
Q Consensus 81 ---------i~iwd~~~~~~----~~~~~~h~~~i~~v~~~~~~~~~~s~~~-----d~~v~lwd~~~------~~~~~~ 136 (229)
|.+|++.+++. +.....|...+..+.|+|++++++.++. +..|++||+.. +.....
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999987652 2222334556789999999998876654 57899999875 321233
Q ss_pred eeecceeeEEEEEEcCCCCCEEEEEEC-C---CcEEEEeCCCCC--ceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC
Q psy4653 137 VFEGHTHYVMQIVINPKDNNTFASASL-D---RTVKVWQLGSAS--PNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD 208 (229)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~l~s~~~-d---~~i~~wd~~~~~--~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d 208 (229)
.+..+...+.. .++| ++..|+..+. + ..|.+||+.++. ....+..|.. .+..+++. +++.++++...|
T Consensus 281 ~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~lv~~~~~~ 356 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV--RSNFLVLCYLHD 356 (710)
T ss_dssp EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE--TTTEEEEEEEET
T ss_pred EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE--cCCEEEEEEEEC
Confidence 33444444433 3556 4555554443 2 369999997764 2355555544 56777774 345578888888
Q ss_pred Ce--EEEEECCCCeEEEeecc
Q psy4653 209 RL--VKIWDYQNKTCVQTLES 227 (229)
Q Consensus 209 ~~--i~iwd~~~~~~~~~~~~ 227 (229)
+. |.+||..+++.+..++.
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~ 377 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPL 377 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECC
T ss_pred CEEEEEEEECCCCCEEEecCC
Confidence 85 55667767777676654
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=9e-15 Score=118.15 Aligned_cols=207 Identities=8% Similarity=0.053 Sum_probs=138.6
Q ss_pred hcccCCCceEEEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEec------CcCeEEEEEcCCCCEEE
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVC------DLPVRAAKFVPRKNWIV 73 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~ 73 (229)
.+..+..+ .++|+|++++++++. .++.|.+||..+.+.+..+... ......+.++|+|++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 34444444 889999999999986 3678999999999988877643 23456789999999998
Q ss_pred EEeC--CCeEEEEECCCcceEEE-eccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeee--------------
Q psy4653 74 TGSD--DMQVCVFNYNTLERFHS-FEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQ-------------- 135 (229)
Q Consensus 74 sg~~--d~~i~iwd~~~~~~~~~-~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~-------------- 135 (229)
+++. ++.|.+||+++++.+.. +... . ...+.+.|++ ..+++.+.|+++.+|+++......
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~ 201 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD 201 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC
Confidence 8874 57899999999888776 5421 1 1223445544 345555566666655543211100
Q ss_pred -----------------------------------eeee--c----c----eeeEEEEEEcCCCCCEEEEEEC-------
Q psy4653 136 -----------------------------------QVFE--G----H----THYVMQIVINPKDNNTFASASL------- 163 (229)
Q Consensus 136 -----------------------------------~~~~--~----~----~~~v~~~~~~~~~~~~l~s~~~------- 163 (229)
..+. . + ......+.++|..+.++++...
T Consensus 202 ~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~ 281 (361)
T 2oiz_A 202 PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTH 281 (361)
T ss_dssp CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCT
T ss_pred ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccc
Confidence 0000 0 0 0000014667743334444331
Q ss_pred ---CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC--eEEEee
Q psy4653 164 ---DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK--TCVQTL 225 (229)
Q Consensus 164 ---d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~ 225 (229)
+..|.+||+.+.+.+..+..+. ...++|.+ ++++|++++. ++|.+||..++ +.++++
T Consensus 282 ~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp--dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 282 KFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ--QRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp TCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET--TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred cCCCceEEEEECCCCcEEEEEecCC--eeEEEECC--CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 3489999999999888888876 88889864 5557877776 99999999999 999986
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=4.1e-15 Score=120.38 Aligned_cols=209 Identities=10% Similarity=0.017 Sum_probs=144.5
Q ss_pred hhhcccCCCceEE-----EEEccCCCeEEEEEe-cC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653 8 KRKLTARSDRVKC-----CDLHPTEPWMLASLY-NG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79 (229)
Q Consensus 8 ~~~~~~~~~~v~~-----~~~~p~~~~l~~~~~-dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~ 79 (229)
.+.+..|...+.. .+|+|||+.|+.++. +| .|.+||+.+++.......+...+....|+|+++.|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 3446666655665 789999999999886 66 488899999887666555554555678999999999999999
Q ss_pred eEEEEECCCcceEEEeccCCCceeEE--EEcCCCCEEEEE----------------------eCCCcEEEEecCCceeee
Q psy4653 80 QVCVFNYNTLERFHSFEAHSDYVRCV--AVHPTQPFLLTS----------------------SDDMLIKLWNWEKAWACQ 135 (229)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~h~~~i~~v--~~~~~~~~~~s~----------------------~~d~~v~lwd~~~~~~~~ 135 (229)
.|.+||+.+++....+..+...+... .++|++.+++.. ..+..|.+||+..+. ..
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-ST 181 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EE
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eE
Confidence 99999999988766666666655444 348999887743 244689999988763 22
Q ss_pred eeeecceeeEEEEEEcCCCCCEEEEEECC------CcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEee-
Q psy4653 136 QVFEGHTHYVMQIVINPKDNNTFASASLD------RTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGA- 206 (229)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s- 206 (229)
. +..+...+..+.|+|.++..++....+ ..|.++|...... ..+..+.. .+....|+ ++++.|+..+
T Consensus 182 ~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s--pdg~~l~~~~~ 257 (388)
T 3pe7_A 182 V-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWV--PDGSALVYVSY 257 (388)
T ss_dssp E-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEEC--TTSSCEEEEEE
T ss_pred E-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceEC--CCCCEEEEEec
Confidence 3 234455678889998446777766643 3777888765443 33444432 35566774 4555554433
Q ss_pred CCC----eEEEEECCCCeE
Q psy4653 207 DDR----LVKIWDYQNKTC 221 (229)
Q Consensus 207 ~d~----~i~iwd~~~~~~ 221 (229)
.++ .|.+||+.+++.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp ETTCCCEEEEEECTTTCCE
T ss_pred CCCCCcceEEEEecCCCce
Confidence 222 399999998874
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=8.3e-15 Score=116.95 Aligned_cols=191 Identities=12% Similarity=0.148 Sum_probs=129.7
Q ss_pred CceEEEEEccCCCeEEEEEec---C--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC------------
Q psy4653 16 DRVKCCDLHPTEPWMLASLYN---G--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD------------ 78 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~d---g--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------------ 78 (229)
..+..+.|+|+|+.|+..+.+ + .|.+||+.+++........ . +..+.|+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357889999999999887754 3 4788888887765554433 3 8999999999988887632
Q ss_pred ---------------CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC-------cEEEEecCCceeeee
Q psy4653 79 ---------------MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM-------LIKLWNWEKAWACQQ 136 (229)
Q Consensus 79 ---------------~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~-------~v~lwd~~~~~~~~~ 136 (229)
..|.+||+++++.+..+.. . .+..+.|+|++ +++++..+. ...||.+..+ ....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEE
Confidence 4688999988776455544 3 78899999999 777776542 3455544422 3333
Q ss_pred eeecceeeEEEEEEcCCCCCEEEEEECC--------CcEEEEeCCCCCceEEEecCCCceEE-EEEEeCCCcCEEEEeeC
Q psy4653 137 VFEGHTHYVMQIVINPKDNNTFASASLD--------RTVKVWQLGSASPNFTLEGHEKGVNC-VDYYHGGDKPYLISGAD 207 (229)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~ 207 (229)
+.. + ..+..+ +| ++..++.++.+ ..|.+|| +++.......+...+.. +.| + ++ ++++++.
T Consensus 213 l~~-~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~--s-dg-~~~~~~~ 281 (347)
T 2gop_A 213 MFE-K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK--D-GK-VYFTLFE 281 (347)
T ss_dssp EEE-E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE--T-TE-EEEEEEE
T ss_pred ecc-C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE--c-Cc-EEEEEec
Confidence 332 3 444444 67 67777766644 3677777 44433323445566765 666 4 55 8899999
Q ss_pred CCeEEEEECCCCeEEEe
Q psy4653 208 DRLVKIWDYQNKTCVQT 224 (229)
Q Consensus 208 d~~i~iwd~~~~~~~~~ 224 (229)
++.++|| +.+++....
T Consensus 282 ~~~~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 282 EGSVNLY-IWDGEIKPI 297 (347)
T ss_dssp TTEEEEE-EESSSEEEE
T ss_pred CCcEEEE-EcCCceEEE
Confidence 9999999 876655433
No 173
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=8.7e-15 Score=113.99 Aligned_cols=192 Identities=10% Similarity=0.036 Sum_probs=147.5
Q ss_pred CCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-Ccee
Q psy4653 26 TEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS-DYVR 103 (229)
Q Consensus 26 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~ 103 (229)
.++.+++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++|+ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 35688889999999999999999999988765 4688999999999988 35778999998 788888887653 4688
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeee-ee----cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc
Q psy4653 104 CVAVHPTQPFLLTSSD-DMLIKLWNWEKAWACQQV-FE----GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177 (229)
Q Consensus 104 ~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 177 (229)
++.+.+++.++++.+. ++.|..+|.. ++..... +. ++......+...+ ++.++++...++.|..||.. ++.
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCE
Confidence 9999999999998887 7778877763 3222211 11 1112233345565 68899999999999999998 888
Q ss_pred eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 178 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
++++.... ...++.. .++++++++++.++.|..+|.++++.+-++.
T Consensus 158 ~w~~~~~~-~~~~~~~--~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 158 LNSVKLSG-TPFSSAF--LDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEEECSS-CCCEEEE--CTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEEEECCC-CccceeE--cCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 88887643 3344444 3456688888888899999999999887764
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=2e-14 Score=112.60 Aligned_cols=206 Identities=7% Similarity=-0.017 Sum_probs=143.8
Q ss_pred cccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653 11 LTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 89 (229)
+..+..-..++.|+|+++ .++++..++.|..||..++ ...+......+.++.++++++++++...++.|.+||.+++
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 444556678999999998 7777888999999999987 5666656667899999999998888777889999999777
Q ss_pred ceEEEeccC----CCceeEEEEcCCCCEEEEEeC-----------------CCcEEEEecCCceeeeeeeecceeeEEEE
Q psy4653 90 ERFHSFEAH----SDYVRCVAVHPTQPFLLTSSD-----------------DMLIKLWNWEKAWACQQVFEGHTHYVMQI 148 (229)
Q Consensus 90 ~~~~~~~~h----~~~i~~v~~~~~~~~~~s~~~-----------------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~ 148 (229)
+........ ...+..++++|++.++++.+. .+.|..++.. + .. ..+..+......+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~-~~~~~~~~~~~gi 177 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TL-SAPIRDRVKPNGL 177 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CE-EEEECCCSSEEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CE-EEeecCCCCCccE
Confidence 643322211 234678999999998887321 2355555544 2 22 2233444556788
Q ss_pred EEcCCCCCEEEEEECCCcEEEEeCC-CCCc---eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653 149 VINPKDNNTFASASLDRTVKVWQLG-SASP---NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224 (229)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 224 (229)
+++| ++..+++.+.++.|.+|++. .+.. ...+..+...+..+++. .+++++++. ++.|.+||.+ ++.+..
T Consensus 178 ~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d--~~G~l~v~~--~~~v~~~~~~-g~~~~~ 251 (296)
T 3e5z_A 178 AFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD--AGGLIWASA--GDGVHVLTPD-GDELGR 251 (296)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB--TTSCEEEEE--TTEEEEECTT-SCEEEE
T ss_pred EECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC--CCCCEEEEc--CCeEEEECCC-CCEEEE
Confidence 9998 57777888888999999986 3333 22232233445667774 455555554 8899999987 666666
Q ss_pred ecc
Q psy4653 225 LES 227 (229)
Q Consensus 225 ~~~ 227 (229)
+..
T Consensus 252 ~~~ 254 (296)
T 3e5z_A 252 VLT 254 (296)
T ss_dssp EEC
T ss_pred EEC
Confidence 653
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=2.1e-13 Score=108.33 Aligned_cols=209 Identities=11% Similarity=0.085 Sum_probs=144.2
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC----CeEEEEEC
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD----MQVCVFNY 86 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~ 86 (229)
+.++...+.+++|+|++.+++++..++.|.+||..+++...........+.++.++|+++++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 44566678999999999977788889999999999887655443445679999999999988887766 68999998
Q ss_pred CCcceEEEec--cCCCceeEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC-E
Q psy4653 87 NTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSD------DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-T 157 (229)
Q Consensus 87 ~~~~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 157 (229)
++++....+. .+...+..++++|++.++++... .+.|..+|.... ..... ......+..+.++| ++. +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~~~~~~~i~~~~-dg~~l 196 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPI-IQNISVANGIALST-DEKVL 196 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEE-EEEESSEEEEEECT-TSSEE
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC-EEEEe-ecCCCcccceEECC-CCCEE
Confidence 8765432322 23457899999999988877654 245666665432 22222 22233467788988 565 4
Q ss_pred EEEEECCCcEEEEeCCC-CCceEEE--------ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 158 FASASLDRTVKVWQLGS-ASPNFTL--------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 158 l~s~~~d~~i~~wd~~~-~~~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+++.+.++.|.+||+.. +.....+ .++ ..+..+++. +++.++++...++.|.+||.+ ++.+..+.
T Consensus 197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d--~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~ 270 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCID--SDDNLYVAMYGQGRVLVFNKR-GYPIGQIL 270 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEB--TTCCEEEEEETTTEEEEECTT-SCEEEEEE
T ss_pred EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEEC--CCCCEEEEEcCCCEEEEECCC-CCEEEEEE
Confidence 55666788999999864 3322211 122 245667763 455677777788999999984 55555554
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=5.9e-15 Score=129.67 Aligned_cols=200 Identities=11% Similarity=0.075 Sum_probs=135.7
Q ss_pred EEEEEccCCCeEEEEEec---------CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653 19 KCCDLHPTEPWMLASLYN---------GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~~d---------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 89 (229)
...+||||++.++.++.+ +.+.+||+.+++... +..+...+....|+|+|+.||.+ .|+.|.+|+..++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC
Confidence 447899999999998876 566799999987643 34455679999999999999888 4689999999887
Q ss_pred ceEEE-eccCCCce-----------------eEEEEcCCCCEEEEEeCCC------------------------------
Q psy4653 90 ERFHS-FEAHSDYV-----------------RCVAVHPTQPFLLTSSDDM------------------------------ 121 (229)
Q Consensus 90 ~~~~~-~~~h~~~i-----------------~~v~~~~~~~~~~s~~~d~------------------------------ 121 (229)
+..+. ..++...+ ..+.||||++.|+..+.|.
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 65432 22332222 3589999999988765322
Q ss_pred ------cEEEEecCC---ce--eeeeeee-----cceeeEEEEEEcCCCCCEEEEEE----CCCcEEEEeCCCCC-----
Q psy4653 122 ------LIKLWNWEK---AW--ACQQVFE-----GHTHYVMQIVINPKDNNTFASAS----LDRTVKVWQLGSAS----- 176 (229)
Q Consensus 122 ------~v~lwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~~----- 176 (229)
+|++||+.. +. ....+.. +|...+..+.|+| ++..++... .+..|++||+.+++
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 477888876 42 1222221 3777899999999 566555443 23479999998876
Q ss_pred -ceEEE--ecCCCceE-----EEEEEeCCCcCEEE-EeeC-C--CeEEEEECCCCeEEE
Q psy4653 177 -PNFTL--EGHEKGVN-----CVDYYHGGDKPYLI-SGAD-D--RLVKIWDYQNKTCVQ 223 (229)
Q Consensus 177 -~~~~~--~~h~~~v~-----~~~~~~~~~~~~l~-s~s~-d--~~i~iwd~~~~~~~~ 223 (229)
.+..+ +.|...+. ...|+ ++++.|+ ..+. + ..|.+||..++++.+
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fs--pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFT--LDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEEC--TTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEc--CCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 12222 44554443 56674 4555554 5553 3 458888988776543
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=1.1e-14 Score=127.06 Aligned_cols=208 Identities=7% Similarity=-0.077 Sum_probs=139.6
Q ss_pred cCCCceEEEEEccCCCeEEEEE-----ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe-------
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASL-----YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ------- 80 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~-----~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~------- 80 (229)
+|+..+.+++|||||+.|+.+. .+..|++||+.+++.+..-.........+.|+|+|+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 5666799999999999988543 3358999999998864111111112267899999999999988765
Q ss_pred ------EEEEECCCcc----eEEEeccCCCceeEEEEcCCCCEEEEEeCCC----cEEEEecCCceeeeeeeecceeeEE
Q psy4653 81 ------VCVFNYNTLE----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM----LIKLWNWEKAWACQQVFEGHTHYVM 146 (229)
Q Consensus 81 ------i~iwd~~~~~----~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~----~v~lwd~~~~~~~~~~~~~~~~~v~ 146 (229)
|.+|++.+++ .+.....|...+..+.|+|++++++.++.++ .|++|+.... .... +..+...+.
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-l~~~~~~~~ 275 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-DFRL-LVKGVGAKY 275 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-SCEE-EEECSSCCE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-ceEE-eecCCCceE
Confidence 9999998765 2333344556788999999999887766555 6777765433 2222 333333444
Q ss_pred EEEEcCCCCCEEEEEE---CCCcEEEEeCCCCCc--eEEEecC--CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC-C
Q psy4653 147 QIVINPKDNNTFASAS---LDRTVKVWQLGSASP--NFTLEGH--EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-N 218 (229)
Q Consensus 147 ~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~-~ 218 (229)
...+ +.+. ++++.. .++.|.+||+.++.. ...+..+ ...+..+++. ++.++++...|+..+||.+. .
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~---~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV---GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE---TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE---CCEEEEEEEECCEEEEEEEeCC
Confidence 4555 3334 555544 357899999977653 2344443 3446777774 34588899999999998765 4
Q ss_pred CeEEEeecc
Q psy4653 219 KTCVQTLES 227 (229)
Q Consensus 219 ~~~~~~~~~ 227 (229)
++.+..+..
T Consensus 351 g~~~~~l~~ 359 (695)
T 2bkl_A 351 GKPVRTVQL 359 (695)
T ss_dssp CCEEEECCC
T ss_pred CCeeEEecC
Confidence 555565543
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=1.3e-13 Score=109.84 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=144.1
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-eEEEEE---------ecCcCeEEEEEcC-CCCEEEEEe-CCCe
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVKSFE---------VCDLPVRAAKFVP-RKNWIVTGS-DDMQ 80 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~sg~-~d~~ 80 (229)
++-.....++++|++.++++...++.|++||..... .+..+. .+-.....++++| +++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999999988888889999999986542 344442 1122578999999 788888886 6899
Q ss_pred EEEEECCCcceEEEecc----------CCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEE
Q psy4653 81 VCVFNYNTLERFHSFEA----------HSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQ 147 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~----------h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~ 147 (229)
|.+|+. .++.+..+.. +-.....++++|+ +.++++...++.|++||.+.+.. ...+ ..+...+..
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFA 245 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEE
T ss_pred EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcce
Confidence 999994 4555555532 2234789999998 77778888899999999874433 3333 234445677
Q ss_pred EEEcCCCCCEEEEE-------ECCCcEEEEeCCCCCceEEEe---cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653 148 IVINPKDNNTFASA-------SLDRTVKVWQLGSASPNFTLE---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217 (229)
Q Consensus 148 ~~~~~~~~~~l~s~-------~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~ 217 (229)
+.++| +..+.+. ..+.+|++||..+++.+..+. .+......+++. +++.++++...++.|++|+..
T Consensus 246 ~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~--~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 246 ISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS--EDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC--TTSEEEEEESSSCCEEEEEEE
T ss_pred eeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC--CCCCEEEEECCCCEEEEEeCC
Confidence 77776 3333333 344589999999888777763 556668888884 455688888899999999986
Q ss_pred C
Q psy4653 218 N 218 (229)
Q Consensus 218 ~ 218 (229)
.
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 4
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=1.8e-15 Score=122.49 Aligned_cols=201 Identities=9% Similarity=-0.005 Sum_probs=132.5
Q ss_pred eEEEEEccCCCeEEEEEec---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653 18 VKCCDLHPTEPWMLASLYN---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 94 (229)
+..++|+|+|+.++.+... ..|.+||+.+++................|+|+++.|+.++.++.|.+||+++++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7788999999998877543 4788899998876444332222233478999999999999999999999988776544
Q ss_pred eccCCCceeE-------------------EEEcCCCCEEEEE-----eCCCcEEEEecCCceeeeeeeecceeeEEEEEE
Q psy4653 95 FEAHSDYVRC-------------------VAVHPTQPFLLTS-----SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVI 150 (229)
Q Consensus 95 ~~~h~~~i~~-------------------v~~~~~~~~~~s~-----~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~ 150 (229)
+..+...... +.|+|+++.++.. ..+..|.+||+..+. ...+. .+...+..+.|
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-LEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-EEEEE-EESSCEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-EEeec-cCCcccccceE
Confidence 4434332222 3567777765543 456789999997653 23332 34556788899
Q ss_pred cCCCCCEEEEEECC------CcEEEEeCCCCCceEEEecCC--CceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECC
Q psy4653 151 NPKDNNTFASASLD------RTVKVWQLGSASPNFTLEGHE--KGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQ 217 (229)
Q Consensus 151 ~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~ 217 (229)
+|.++..++..+.+ ..|.+||+..+.. ..+..+. ..+..++|. ++++.|+.++.+ +.|.+||+.
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWI--PDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEEC--TTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEEC--CCCCEEEEEecCCCCccceEEEEECC
Confidence 98445656655433 4688888865543 2232232 246667774 455556655543 459999998
Q ss_pred CCeEEE
Q psy4653 218 NKTCVQ 223 (229)
Q Consensus 218 ~~~~~~ 223 (229)
+++...
T Consensus 273 ~g~~~~ 278 (396)
T 3c5m_A 273 TLENEE 278 (396)
T ss_dssp TCCEEE
T ss_pred CCCeEE
Confidence 886543
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=1.4e-13 Score=105.99 Aligned_cols=199 Identities=9% Similarity=-0.033 Sum_probs=141.3
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 94 (229)
..+.+++++|++..+++.. ++.|.+||..+.... .+.. .......+.+.++++++++...++.|.+|+..+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 4678999999998555555 889999998875443 2222 224688999999999888877788999997665443322
Q ss_pred eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174 (229)
Q Consensus 95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 174 (229)
.........++++++++.++++...++.|.+||......... ...+...+..+++++ ++.++++...++.|.+||...
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-PFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-CCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTC
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee-cccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCC
Confidence 222334678999999999777777788999999876532222 122224577888987 567888777788999999876
Q ss_pred CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 175 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
.........+...+.++++. ++++++++.+.++.|++++....+
T Consensus 223 ~~~~~~~~~~~~~p~~i~~~--~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 223 TTSTVLPFTGLNTPLAVAVD--SDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SCCEECCCCSCSCEEEEEEC--TTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CcceeeccCCCCCceeEEEC--CCCCEEEEECCCCEEEEEcCCCcc
Confidence 54332222333457788874 455688888899999999987654
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=2.3e-13 Score=106.51 Aligned_cols=203 Identities=9% Similarity=-0.032 Sum_probs=139.1
Q ss_pred hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEE----Ee-----
Q psy4653 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVT----GS----- 76 (229)
Q Consensus 10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s----g~----- 76 (229)
.+..+...+.+++++|++.++++...++.|.+||..+++......... ..+..+.++|+|+++++ |+
T Consensus 63 ~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~ 142 (296)
T 3e5z_A 63 PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE 142 (296)
T ss_dssp EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence 355566789999999999977766667999999998887644432211 24567999999998887 33
Q ss_pred --------CCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee---eeeeecceeeE
Q psy4653 77 --------DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC---QQVFEGHTHYV 145 (229)
Q Consensus 77 --------~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~---~~~~~~~~~~v 145 (229)
..+.|..++.+ + .+..+..+......++|+|+++.+++.+.++.|.+|++...... ...+..+...+
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p 220 (296)
T 3e5z_A 143 GYGGEMELPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT 220 (296)
T ss_dssp SSCCCCCSSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC
T ss_pred cccccccCCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC
Confidence 12455555554 3 33444556667789999999998877778899999998622122 22332233445
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 146 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
..+.+++ ++.++++. ++.|.+||.. ++.+..+..+.. +.+++|. .+++..|..++.++ +.-++.++.+.
T Consensus 221 ~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~-~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 221 DGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFG-GPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp CSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEE-STTSCEEEEEETTE-EEEEECSCCBC
T ss_pred CeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEE-CCCCCEEEEEcCCe-EEEEEcccccc
Confidence 6788887 57766655 8899999986 666667776666 8888885 34556677777663 44556665543
No 182
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=1.3e-13 Score=111.44 Aligned_cols=207 Identities=10% Similarity=-0.005 Sum_probs=134.7
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEE--EEcCCCCEEEEE-------------
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA--KFVPRKNWIVTG------------- 75 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~sg------------- 75 (229)
..++...+..+.|+|+++.|+.+..++.|.+||+.+++....+......+... .++|+++.++..
T Consensus 76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence 34555566678899999999999999999999999998877666554434333 348899888742
Q ss_pred ---------eCCCeEEEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCC------CcEEEEecCCceeeeeeee
Q psy4653 76 ---------SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDD------MLIKLWNWEKAWACQQVFE 139 (229)
Q Consensus 76 ---------~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d------~~v~lwd~~~~~~~~~~~~ 139 (229)
..+..|.+||+.+++.. .+..+...+..+.|+| +++.++....+ ..|.++|+... ....+..
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~ 233 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-NMRKVKT 233 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-CCEESCC
T ss_pred chhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-ceEEeee
Confidence 24467999999887653 4445667789999999 99988766553 37888887543 2223222
Q ss_pred cce-eeEEEEEEcCCCCCEEEEEE-C-CC---cEEEEeCCCCCceE--EEecCCCc---eEEEEEEeCCCcCEEEEe---
Q psy4653 140 GHT-HYVMQIVINPKDNNTFASAS-L-DR---TVKVWQLGSASPNF--TLEGHEKG---VNCVDYYHGGDKPYLISG--- 205 (229)
Q Consensus 140 ~~~-~~v~~~~~~~~~~~~l~s~~-~-d~---~i~~wd~~~~~~~~--~~~~h~~~---v~~~~~~~~~~~~~l~s~--- 205 (229)
... ..+..+.|+| ++..|+..+ . +. .|.+||+.+++... .+.++... .....|++. +..|+..
T Consensus 234 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~ 310 (388)
T 3pe7_A 234 HAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD--GSDAPVDVQD 310 (388)
T ss_dssp CCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE--ECCC------
T ss_pred CCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC--CCcceeEeee
Confidence 221 3577888998 566554433 2 22 39999998876422 22221000 111245543 3334422
Q ss_pred ------eCCCeEEEEECCCCeEE
Q psy4653 206 ------ADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 206 ------s~d~~i~iwd~~~~~~~ 222 (229)
..+..|.+||..+++..
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp ------CCCCEEEEEETTTTEEE
T ss_pred ccccccCCCCEEEEEeccCCceE
Confidence 55678999999988753
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=1.2e-13 Score=110.14 Aligned_cols=188 Identities=7% Similarity=0.081 Sum_probs=129.2
Q ss_pred eEEEEEccCCCeEEEEEec---------------------------CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC
Q psy4653 18 VKCCDLHPTEPWMLASLYN---------------------------GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~~d---------------------------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 70 (229)
+..++|+|+++.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|++
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg- 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence 8999999999988887642 5799999999877455544 3 78899999999
Q ss_pred EEEEEeCCC-------eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC--------CcEEEEecCCceeee
Q psy4653 71 WIVTGSDDM-------QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD--------MLIKLWNWEKAWACQ 135 (229)
Q Consensus 71 ~l~sg~~d~-------~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d--------~~v~lwd~~~~~~~~ 135 (229)
+++++..+. ...+|.+++++ ...+..+ ..+..+ +|+++.++.++.+ ..|.+|| .+ ...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~ 255 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EVM 255 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEE
T ss_pred EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-ceE
Confidence 888776542 33455444443 3444444 444444 9999988776644 3677887 22 334
Q ss_pred eeeecceeeEEE-EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeE-EE
Q psy4653 136 QVFEGHTHYVMQ-IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLV-KI 213 (229)
Q Consensus 136 ~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i-~i 213 (229)
.+..++...+.. +.|+ ++ ++++++.++.+++| +..++. ..+..+...+.++++. + .++++++.++.. +|
T Consensus 256 ~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s--~--~~~~~~~~~~~~~~l 326 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVD--E--IVVYLKETATRLREL 326 (347)
T ss_dssp ESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEES--S--SEEEEEECSSSCCEE
T ss_pred eccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeee--C--cEEEEEcCCCChHHh
Confidence 444555666775 7887 56 88899999999999 874443 4444556678888874 3 477777777665 88
Q ss_pred EECCCCeEEEeec
Q psy4653 214 WDYQNKTCVQTLE 226 (229)
Q Consensus 214 wd~~~~~~~~~~~ 226 (229)
|.+. ++. ..++
T Consensus 327 ~~~~-g~~-~~lt 337 (347)
T 2gop_A 327 FTWD-GEE-KQLT 337 (347)
T ss_dssp EEES-SSE-EECC
T ss_pred eEeC-CcE-EEec
Confidence 8877 553 3344
No 184
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=3.6e-13 Score=118.35 Aligned_cols=207 Identities=7% Similarity=-0.004 Sum_probs=134.2
Q ss_pred cCCCceEEEEEccCCCeEEEEEec-----CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe-------
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYN-----GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ------- 80 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~d-----g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~------- 80 (229)
+|+..+..++|||||+.|+.+..+ ..|++||+.+++.+... .....+..+.|+|+ +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344468899999999999887654 35999999999875532 12222357889999 98888876553
Q ss_pred -------EEEEECCCcce--EEEe--ccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCceee-eeeeeccee
Q psy4653 81 -------VCVFNYNTLER--FHSF--EAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAWAC-QQVFEGHTH 143 (229)
Q Consensus 81 -------i~iwd~~~~~~--~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~~~-~~~~~~~~~ 143 (229)
|.+|++.++.. ...+ ..+...+..+.|+|++++++..+.+ ..|++||+..+... ...+..+..
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 88999876652 2223 2333468899999999988766644 38999998765211 233333333
Q ss_pred eEEEEEEcCCCCCEEEEEEC----CCcEEEEeCCCCC-ceEEE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653 144 YVMQIVINPKDNNTFASASL----DRTVKVWQLGSAS-PNFTL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217 (229)
Q Consensus 144 ~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~ 217 (229)
....... | ++..|+..+. ++.|.+||+.+.. ....+ ..+...+..+++. ++.++++...|+..+||.+.
T Consensus 318 ~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~---~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 318 AQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA---GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE---BTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE---CCEEEEEEEECCEEEEEEEe
Confidence 3333333 5 4666666654 3459999987642 33333 3444445566664 34578889999998888765
Q ss_pred -CCeEEEeec
Q psy4653 218 -NKTCVQTLE 226 (229)
Q Consensus 218 -~~~~~~~~~ 226 (229)
.++.++.++
T Consensus 393 ~~g~~~~~l~ 402 (741)
T 1yr2_A 393 LDGKPAGAVS 402 (741)
T ss_dssp TTSCEEEECB
T ss_pred CCCCceeecc
Confidence 455666655
No 185
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=1.1e-13 Score=112.20 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=127.9
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-----------eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-----------NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
+++.+++++....+++|+.+ .+.+|++.+.+ ..... .... |..+.| ++++|+++ .++.|.+||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 69999999999999998877 55559976432 11222 2445 999999 89999999 889999999
Q ss_pred CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653 86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR 165 (229)
Q Consensus 86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 165 (229)
+...........|...+..+.+.+. .+++++.||+|.+||+.+... .. +...|.+++|+| ++ ++.|..|+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSp-kG--~~vg~~dg 182 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTN-SQ--LAVLLKDR 182 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECS-SE--EEEEETTS
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcC-Cc--eEEEEcCC
Confidence 9876655556677778888777654 388899999999999986533 22 456799999998 45 67799999
Q ss_pred cEEEEeCCCCCc--eEEE------e---cCCCceEEEEEEeCCCcCEEEE
Q psy4653 166 TVKVWQLGSASP--NFTL------E---GHEKGVNCVDYYHGGDKPYLIS 204 (229)
Q Consensus 166 ~i~~wd~~~~~~--~~~~------~---~h~~~v~~~~~~~~~~~~~l~s 204 (229)
++++|+...... ..++ . +|...|.++.|. ++..++++
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl--~~~~flv~ 230 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL--SPQDFLAV 230 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES--SSSEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe--cCCeEEEE
Confidence 999998876553 4455 2 366778888884 35556665
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=6.5e-14 Score=113.35 Aligned_cols=196 Identities=10% Similarity=0.016 Sum_probs=128.7
Q ss_pred EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEE-------------------EEEcCCCCEEEEE----
Q psy4653 19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA-------------------AKFVPRKNWIVTG---- 75 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~sg---- 75 (229)
..+.|+|+++.|+.++.++.|.+||+.+++....+......... ..|+|+++.++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 34789999999999999999999999998876555433321111 3457777766554
Q ss_pred -eCCCeEEEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCC------CcEEEEecCCceeeeeeeecc-eeeEE
Q psy4653 76 -SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDD------MLIKLWNWEKAWACQQVFEGH-THYVM 146 (229)
Q Consensus 76 -~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d------~~v~lwd~~~~~~~~~~~~~~-~~~v~ 146 (229)
..+..|.+||+++++..... .+...+..+.|+| ++..++..+.+ ..|.+||+.... ...+.... ...+.
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHAEGESCT 241 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCCTTEEEE
T ss_pred CCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccCCCcccc
Confidence 35668999999887654433 4667789999999 77766655443 468888886542 22222221 23577
Q ss_pred EEEEcCCCCCEEEEEECC-----CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee---------------
Q psy4653 147 QIVINPKDNNTFASASLD-----RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA--------------- 206 (229)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--------------- 206 (229)
.+.|+| ++..|+.++.+ +.|++||+.+++...... .. ... ..|.+ .++.++++++
T Consensus 242 ~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~-~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 242 HEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSN-FDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEEC-SSSSEEEEEECCC----------CC
T ss_pred ceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccC-CCCceEEEecCCcceeecccccccc
Confidence 889998 56766655543 449999998776433222 11 233 56653 1455666654
Q ss_pred -CCCeEEEEECCCCeE
Q psy4653 207 -DDRLVKIWDYQNKTC 221 (229)
Q Consensus 207 -~d~~i~iwd~~~~~~ 221 (229)
.+..|.+||..+++.
T Consensus 317 ~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CCCCEEEEEETTTTBC
T ss_pred CCCCcEEEEecccCce
Confidence 347899999988764
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.57 E-value=3e-12 Score=103.35 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=100.6
Q ss_pred CCCeEEEEE------ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCc
Q psy4653 26 TEPWMLASL------YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD----------DMQVCVFNYNTL 89 (229)
Q Consensus 26 ~~~~l~~~~------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----------d~~i~iwd~~~~ 89 (229)
+++.+++.. .|+.|.+||..+++.+..+.....+ .+.|+|++++|.+++. ++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455566543 4789999999999988887765544 8999999999988863 567999999988
Q ss_pred ceEEEeccC------CCceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653 90 ERFHSFEAH------SDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161 (229)
Q Consensus 90 ~~~~~~~~h------~~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 161 (229)
+.+..+... ......++|+|++++++++.. +++|.+||+.........+... + ...+.+.|.....+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEE
Confidence 887776533 234568999999999988764 6899999998774433302211 1 11133445434566666
Q ss_pred ECCCcEEEEeCC
Q psy4653 162 SLDRTVKVWQLG 173 (229)
Q Consensus 162 ~~d~~i~~wd~~ 173 (229)
+.|+++.+|+..
T Consensus 170 ~~dg~~~~v~~~ 181 (361)
T 2oiz_A 170 CGDGGLLTINLG 181 (361)
T ss_dssp ETTSSEEEEEEC
T ss_pred CCCCcEEEEEEC
Confidence 666766666653
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=1e-12 Score=101.08 Aligned_cols=199 Identities=7% Similarity=-0.078 Sum_probs=133.9
Q ss_pred ceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 17 RVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
...+++++|++..++ +...++.|.+||..+...............++.+.++++++++.. ++.|..||.+..... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 678999999998666 446789999999876543222112224578899999999766665 889999998765432 22
Q ss_pred c-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653 96 E-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174 (229)
Q Consensus 96 ~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 174 (229)
. ........+++++++.++++...++.|.+|+........ ........+..+++++ ++.++++...++.|.+||...
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-CCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-eccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC
Confidence 2 223568899999999988887778899999865432211 1112223456788887 567888777788999999876
Q ss_pred CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 175 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
.........+...+..+++. +++.++++...++.|.+||......
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d--~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVD--EAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCEEECCCSSCCSEEEEEEC--TTCCEEEEETTTSCEEEECTTCSCC
T ss_pred CceEeecccCCCCceEEEEC--CCCCEEEEECCCCcEEEEcCCCCcc
Confidence 55333222333457778874 3456777777788999999876543
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=3.4e-12 Score=99.33 Aligned_cols=208 Identities=8% Similarity=-0.008 Sum_probs=144.8
Q ss_pred hhhcccCC-CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q psy4653 8 KRKLTARS-DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD-DMQVCVF 84 (229)
Q Consensus 8 ~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~-d~~i~iw 84 (229)
.-++..+. ..+.++.+.|+|++++ +.++.|..||. +++.+..+.... ..+.++.+.++|+.+++.+. ++.+..+
T Consensus 28 ~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v 104 (276)
T 3no2_A 28 VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV 104 (276)
T ss_dssp EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence 33455444 4789999999999888 45889999999 899999988653 46888999999999999887 7778777
Q ss_pred ECCCcceEEEecc------CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653 85 NYNTLERFHSFEA------HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158 (229)
Q Consensus 85 d~~~~~~~~~~~~------h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (229)
|. .++.+..+.. +......+.+.+++.++++...++.|.+||.+ ++. ...+... ..+..+...+ ++.++
T Consensus 105 d~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~-~g~~~ 179 (276)
T 3no2_A 105 NM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLD-NGDCL 179 (276)
T ss_dssp CT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-EEEEECS-SCCCEEEECT-TSCEE
T ss_pred eC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-EEEEECC-CCccceeEcC-CCCEE
Confidence 75 5666665532 22234567789999999999999999999987 533 3333332 2344455665 67889
Q ss_pred EEEECCCcEEEEeCCCCCceEEEecCC------CceEEEEEEeCCCcCEEEEeeCC--------CeEEEEEC-CCCeEEE
Q psy4653 159 ASASLDRTVKVWQLGSASPNFTLEGHE------KGVNCVDYYHGGDKPYLISGADD--------RLVKIWDY-QNKTCVQ 223 (229)
Q Consensus 159 ~s~~~d~~i~~wd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~l~s~s~d--------~~i~iwd~-~~~~~~~ 223 (229)
++++.+++|..+|..+++.++++..+. ..+..+.. ..++.++++.+.. +..+++.+ .+++.+=
T Consensus 180 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~--~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W 257 (276)
T 3no2_A 180 VACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFP--LQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW 257 (276)
T ss_dssp EECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEE--CTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred EEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceE--cCCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence 888888899999999999998886432 11444444 3455566665311 23355555 3455543
Q ss_pred ee
Q psy4653 224 TL 225 (229)
Q Consensus 224 ~~ 225 (229)
++
T Consensus 258 ~~ 259 (276)
T 3no2_A 258 QL 259 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=2.6e-12 Score=102.34 Aligned_cols=209 Identities=8% Similarity=0.001 Sum_probs=141.3
Q ss_pred hhcccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecC-----cCeEEEEEcCCCCEEEEEe-CCCeE
Q psy4653 9 RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCD-----LPVRAAKFVPRKNWIVTGS-DDMQV 81 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~-~d~~i 81 (229)
+++.. ......++++|++. ++++. .++.|.+||..+++....+.... .....+.+ ..++++++.. .++.|
T Consensus 78 ~~i~~-~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 78 GRITG-FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRI 154 (328)
T ss_dssp EEEEC-CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred EEcCC-CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence 34432 35678899999985 55554 89999999999998877766543 02345556 3444444443 48899
Q ss_pred EEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC----------CcEEEEecCCceeeeeeeec-ceeeEEEEEE
Q psy4653 82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----------MLIKLWNWEKAWACQQVFEG-HTHYVMQIVI 150 (229)
Q Consensus 82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----------~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~ 150 (229)
.++|+++++.+..+... .....+.++|++++++++..+ +.|.++|...... ...+.- .......+++
T Consensus 155 ~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEE
T ss_pred EEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEE
Confidence 99999998877766543 334688999999877776554 7899999876643 322221 1224678999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCceE--EEecCCCceEEEEEEeCCCcCEEEEe----eCCCeEEEEECCCCeEEEe
Q psy4653 151 NPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLISG----ADDRLVKIWDYQNKTCVQT 224 (229)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~----s~d~~i~iwd~~~~~~~~~ 224 (229)
+| ++..+..+.. .|.+||..+++... .+.........+++.+. ++.+.++. ..++.|.+||.. ++.+.+
T Consensus 233 ~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~-~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 233 NG-TRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN-NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp CT-TSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT-TCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred ec-CCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC-CCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 98 4566655443 89999998765421 12222345677887432 44566666 678999999998 888888
Q ss_pred ecc
Q psy4653 225 LES 227 (229)
Q Consensus 225 ~~~ 227 (229)
++.
T Consensus 308 i~~ 310 (328)
T 3dsm_A 308 FYV 310 (328)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=1.6e-12 Score=113.76 Aligned_cols=200 Identities=7% Similarity=-0.018 Sum_probs=137.3
Q ss_pred ceEEEEEccCCCeEEEEEecCe----------------EEEEEcCCCCeE--EEEEec--CcCeEEEEEcCCCCEEEEEe
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGH----------------VHVWNHETNQNV--KSFEVC--DLPVRAAKFVPRKNWIVTGS 76 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~----------------v~~wd~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~sg~ 76 (229)
.+..++|+||++.|+.++.++. |.+|++.+++.. ..+... ...+..+.|+|+|++|+.++
T Consensus 172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (710)
T ss_dssp CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence 3678999999999999987765 999999987632 333332 33478899999999988776
Q ss_pred C-----CCeEEEEECCC------cc-eEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCcee--eeeee
Q psy4653 77 D-----DMQVCVFNYNT------LE-RFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWA--CQQVF 138 (229)
Q Consensus 77 ~-----d~~i~iwd~~~------~~-~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~--~~~~~ 138 (229)
. +..|.+||+.+ +. ....+..+...+.. .|+|++..++..+.+ +.|.+||+..... ...+.
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence 4 56899999876 43 35556666665554 488888876655443 3699999876521 12333
Q ss_pred ecce-eeEEEEEEcCCCCCEEEEEECCCc--EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEee---CCCeE
Q psy4653 139 EGHT-HYVMQIVINPKDNNTFASASLDRT--VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGA---DDRLV 211 (229)
Q Consensus 139 ~~~~-~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s---~d~~i 211 (229)
..+. ..+..+.+.+ ++.++++...|+. |.+||+.+++.+..+..+...+..+++.+ ++. ++++.+ ..++|
T Consensus 331 ~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 331 PEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK--KDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp CCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT--TCSEEEEEEECSSCCCEE
T ss_pred CCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCC--CCCEEEEEEeCCCCCCEE
Confidence 3222 2567778875 5668888888884 55667766776677777766677777743 333 443433 35789
Q ss_pred EEEECCCCe
Q psy4653 212 KIWDYQNKT 220 (229)
Q Consensus 212 ~iwd~~~~~ 220 (229)
.+||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998876
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.55 E-value=1.6e-11 Score=104.59 Aligned_cols=208 Identities=12% Similarity=0.114 Sum_probs=146.8
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcC--CCCeEEEEEecCcCeEEEEEc----CCCCEEEEEeC-CCeEEEEECCC
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHE--TNQNVKSFEVCDLPVRAAKFV----PRKNWIVTGSD-DMQVCVFNYNT 88 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~sg~~-d~~i~iwd~~~ 88 (229)
..+..+.|+|+++++++++.|+.|.+||+. +++.+..+.... .-..+.|+ |+|+++++++. ++++.++|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356789999999999999999999999996 888877776544 35789999 69998877765 58999999999
Q ss_pred cceEEEecc----------C-CCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC
Q psy4653 89 LERFHSFEA----------H-SDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156 (229)
Q Consensus 89 ~~~~~~~~~----------h-~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (229)
.+.+..+.. | ...+..+..+++++.+ +....+|+|.++|....................+.|+| ++.
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr 354 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHR 354 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSC
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCC
Confidence 888776542 2 2267889999887755 45566799999998654221111111222345677888 677
Q ss_pred EEEEEE-CCCcEEEEeCCCCCceEEEec-----CCCceEEEEEEeCCCcCEEEEee-CCCeEEEEECCC-------CeEE
Q psy4653 157 TFASAS-LDRTVKVWQLGSASPNFTLEG-----HEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQN-------KTCV 222 (229)
Q Consensus 157 ~l~s~~-~d~~i~~wd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~-------~~~~ 222 (229)
+++.+. .++.|.++|..+++.+..+.- |... ...|.+...+...+++. .+++|.++|..+ .+.+
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc--ceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 766554 678999999998876665543 3221 22343333344555554 578999999987 6677
Q ss_pred Eeecc
Q psy4653 223 QTLES 227 (229)
Q Consensus 223 ~~~~~ 227 (229)
++++.
T Consensus 433 ~~i~~ 437 (567)
T 1qks_A 433 DSFPA 437 (567)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87764
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=6.2e-13 Score=105.57 Aligned_cols=195 Identities=9% Similarity=0.012 Sum_probs=137.2
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
..|.++.|+|++..++..+.++.++.| .++....+..+.....++.|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 468889999999888777888999999 34445555555556789999999998888888999999999887654444
Q ss_pred ccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEEEEEC------
Q psy4653 96 EAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASL------ 163 (229)
Q Consensus 96 ~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------ 163 (229)
..+...+.+++++|++.++++...+ +.|.+||.+.... ..... .+...+..+.++| ++.++++...
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBC
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECC-CCCEEEEeccccccCC
Confidence 3456789999999999988877766 6899999876532 21221 2334578889998 5777776553
Q ss_pred CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCC
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQN 218 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~ 218 (229)
.+.|..+|..+++. ..+..+...+..++|. +++. ++++.+.++.|.+||.++
T Consensus 161 ~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 161 LGGVYYVSPDFRTV-TPIIQNISVANGIALS--TDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CEEEEEECTTSCCE-EEEEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECT
T ss_pred CceEEEEeCCCCEE-EEeecCCCcccceEEC--CCCCEEEEEeCCCCeEEEEEecC
Confidence 24555555544332 2232223346777774 4555 445556788999999964
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=1.8e-11 Score=104.20 Aligned_cols=199 Identities=9% Similarity=0.053 Sum_probs=142.3
Q ss_pred ccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CcceEEEeccCCCc
Q psy4653 24 HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN--TLERFHSFEAHSDY 101 (229)
Q Consensus 24 ~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~--~~~~~~~~~~h~~~ 101 (229)
+|.+..+++...++.|.++|..+++.+..+.... ....+.|+|+++++.+++.|+.|.+||+. +.+.+..+.... .
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 3444455555678999999999999988887544 56789999999999999999999999995 777777776533 3
Q ss_pred eeEEEEc----CCCCEEEEEe-CCCcEEEEecCCceeeeeeeec---------cee-eEEEEEEcCCCCCEEEEEECCCc
Q psy4653 102 VRCVAVH----PTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEG---------HTH-YVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 102 i~~v~~~----~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~---------~~~-~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
-..++|+ |++++++++. .+++|.++|..+......+..+ |.. .+..+..++.....+++...++.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 5789999 6999877665 4599999998776443332211 112 35667777654556666667899
Q ss_pred EEEEeCCCCCceE--EEecCCCceEEEEEEeCCCcCEEEE-eeCCCeEEEEECCCCeEEEeecc
Q psy4653 167 VKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLIS-GADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 167 i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
|.++|......+. .+. .......+.| .++++++++ +..+++|.++|.++++.+.+++.
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~--~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGL--DGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEE--CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCccceeeeee-ccccccCceE--CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 9999987654322 222 2234566677 445666555 44688999999999998877754
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=3.1e-11 Score=93.83 Aligned_cols=203 Identities=8% Similarity=-0.013 Sum_probs=141.0
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 88 (229)
+..+...+.++++.|++..+++...++.|.+||.. ++.. .+. .....+.++.+.+++++.++...++.|..||.+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC
Confidence 44455689999999999977776668999999998 5543 332 2345689999999999888877788899999762
Q ss_pred cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168 (229)
Q Consensus 89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 168 (229)
......+......+.++++.+++.++++...++.|.+||. ...............+..+.+.+ ++.++++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEE
Confidence 2111222224457889999999988888877889999998 33222222222334577888887 567777766778999
Q ss_pred EEeCCCCCceEE-EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 169 VWQLGSASPNFT-LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 169 ~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
.||. +++.... +......+..+++. +++.+.++...++.|..||. +++.
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKG--NDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEEC--CCCCEEEEccCCceEEEECC-CCcE
Confidence 9998 5443321 22334456777773 44556666667889999999 6553
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=9.3e-11 Score=91.08 Aligned_cols=198 Identities=7% Similarity=-0.005 Sum_probs=137.6
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 91 (229)
+...+.++++.|++..+++...++.|..||.. ++. ..+.. ....+..+.+.+++++.++...++.|..||. +++.
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 34678999999999877777678999999986 333 33332 3346889999999998888777889999998 4443
Q ss_pred EE-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653 92 FH-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170 (229)
Q Consensus 92 ~~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 170 (229)
.. ....+...+..+++.+++.++++...++.|..||. ++.............+..+.+.+ ++.++++...++.|..|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEE
Confidence 22 22334456899999999988887777889999998 43222211222334567888887 56777776678899999
Q ss_pred eCCCCCceE-EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 171 QLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 171 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
|. ++.... .+..+...+.++++. +++.++++...++.|..||. +++
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAG--AGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEEET-TTE
T ss_pred CC-CCcEEEEECCCCCCCceeEEEC--CCCCEEEeccCCceEEEECC-CCc
Confidence 98 554322 123334567778774 34556666657889999998 444
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=2.9e-12 Score=111.87 Aligned_cols=197 Identities=8% Similarity=-0.057 Sum_probs=131.6
Q ss_pred EEEEEccCCCeEEEEEecCe-------------EEEEEcCCCCe--EEEEEe--cCcCeEEEEEcCCCCEEEEEeCCC--
Q psy4653 19 KCCDLHPTEPWMLASLYNGH-------------VHVWNHETNQN--VKSFEV--CDLPVRAAKFVPRKNWIVTGSDDM-- 79 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~~dg~-------------v~~wd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~-- 79 (229)
..++|+||++.|+.++.|.. |.+|++.+++. ...+.. +...+..+.|+|+|++|+.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 68899999999999988776 99999998863 233332 234688999999999988877665
Q ss_pred --eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe---CCCcEEEEecCCcee--eeeeeecc-eeeEEEEEEc
Q psy4653 80 --QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS---DDMLIKLWNWEKAWA--CQQVFEGH-THYVMQIVIN 151 (229)
Q Consensus 80 --~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~---~d~~v~lwd~~~~~~--~~~~~~~~-~~~v~~~~~~ 151 (229)
.|.+|+..+++ ...+..+.+.+....++ ++.+++.+. .++.|.+||+..... ...++..+ ...+..+.++
T Consensus 251 ~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 251 ENDVYWKRPGEKD-FRLLVKGVGAKYEVHAW-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEEEECTTCSS-CEEEEECSSCCEEEEEE-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred ceEEEEEcCCCCc-eEEeecCCCceEEEEec-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 67777665543 34455566666666664 444555544 258899999876431 23333333 3456677776
Q ss_pred CCCCCEEEEEECCCcEEEEeCC-CCCceEEEecC-CCceEEEEEEeCCCcCEEE-Eee---CCCeEEEEECCCCeE
Q psy4653 152 PKDNNTFASASLDRTVKVWQLG-SASPNFTLEGH-EKGVNCVDYYHGGDKPYLI-SGA---DDRLVKIWDYQNKTC 221 (229)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~-s~s---~d~~i~iwd~~~~~~ 221 (229)
++.++++...|+..++|.+. .+.....+..+ ...+..+++.+ ++..++ +.+ ..++|.+||+.+++.
T Consensus 329 --~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 329 --GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE--DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp --TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT--TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred --CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC--CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 46788899999998888664 34444555544 44566666643 343343 333 457899999988763
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=3.3e-11 Score=98.83 Aligned_cols=199 Identities=11% Similarity=-0.006 Sum_probs=137.8
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEE
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFH 93 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~ 93 (229)
.....++|+|++.++++...++.|++||..+++..........+ . +.|+++++.|+++..++ .|..++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 35789999999997777777899999999987765554433333 3 99999999988888766 78888876554333
Q ss_pred Ee---cc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee----eecceeeE-E-EEEEcCCCCCEEEEEEC
Q psy4653 94 SF---EA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV----FEGHTHYV-M-QIVINPKDNNTFASASL 163 (229)
Q Consensus 94 ~~---~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~----~~~~~~~v-~-~~~~~~~~~~~l~s~~~ 163 (229)
.+ .. ......+++++|++..|+.+..++.|+.||...... ... ..++.... . .++++|.++.++++...
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 33 12 345678999999555555577788999999875532 111 11222222 2 78899866777888788
Q ss_pred CCcEEEEeCCCCCceEEEecCC---------------CceEEEEEEeCCCcCEEEEee-CCCeEEEEECCCCeE
Q psy4653 164 DRTVKVWQLGSASPNFTLEGHE---------------KGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTC 221 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~h~---------------~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~ 221 (229)
+++|+.|+.... ...+.++. .....+++. +++.++++-+ .++.|+.||..++..
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d--~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD--EDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC--TTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe--CCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 899999997643 33333322 235677774 4556777877 899999999877764
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=6.4e-11 Score=92.89 Aligned_cols=199 Identities=9% Similarity=0.068 Sum_probs=134.9
Q ss_pred CCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEE-EEec----CcCeEEEEEcCCCCEEEEEeCC---------
Q psy4653 14 RSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKS-FEVC----DLPVRAAKFVPRKNWIVTGSDD--------- 78 (229)
Q Consensus 14 ~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~----~~~v~~~~~~~~~~~l~sg~~d--------- 78 (229)
+...+.++.++|+ +..+ ++...+.|.+||.. ++.... .... ...+..+.+.+++++.++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLF-VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEE-EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEE-EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4467899999999 6544 44445589999998 665433 2211 1347899999999988777655
Q ss_pred ------CeEEEEECCCcceEEEeccCCCceeEEEEc----CCCCEEE-EEeCCCcEEEEecC-Ccee----eeeeeecce
Q psy4653 79 ------MQVCVFNYNTLERFHSFEAHSDYVRCVAVH----PTQPFLL-TSSDDMLIKLWNWE-KAWA----CQQVFEGHT 142 (229)
Q Consensus 79 ------~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~----~~~~~~~-s~~~d~~v~lwd~~-~~~~----~~~~~~~~~ 142 (229)
+.|..++.+ ++. ..+..+......++++ |+++.++ +...++.|.+||+. .+.. ....+.++.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 466677665 433 2222333456789999 9987654 54567899999975 2211 111222332
Q ss_pred -eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCC
Q psy4653 143 -HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 143 -~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~ 219 (229)
..+..+++++ ++.++++...++.|.+||..+++.+..+..+...+.++++ .+++. ++++...++.|..|+....
T Consensus 225 ~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~--~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 225 EGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF--KPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp SCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE--CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE--CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 4567788887 6788888778899999999867766667666667888888 44556 4555566789999998753
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=2.7e-11 Score=95.06 Aligned_cols=204 Identities=8% Similarity=0.021 Sum_probs=133.2
Q ss_pred CCceEEEEEccCCCeEEE-------EEecCeEEEEEcCCCCeEEEEE----ecCcCeEEEEEcCC-CCEEEEEeCCCeEE
Q psy4653 15 SDRVKCCDLHPTEPWMLA-------SLYNGHVHVWNHETNQNVKSFE----VCDLPVRAAKFVPR-KNWIVTGSDDMQVC 82 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~-------~~~dg~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~sg~~d~~i~ 82 (229)
-....+++|+|++..+++ +..++.|.+||..+++...... .....+.++.++++ ++++++.. ...|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 345689999999987777 5788999999998877643221 02346889999999 76555544 44788
Q ss_pred EEECCCcceEEE-ecc----CCCceeEEEEcCCCCEEEEEeCC---------------CcEEEEecCCceeeeeeeecce
Q psy4653 83 VFNYNTLERFHS-FEA----HSDYVRCVAVHPTQPFLLTSSDD---------------MLIKLWNWEKAWACQQVFEGHT 142 (229)
Q Consensus 83 iwd~~~~~~~~~-~~~----h~~~i~~v~~~~~~~~~~s~~~d---------------~~v~lwd~~~~~~~~~~~~~~~ 142 (229)
+||.+ ++.... ... ....+.++++++++.++++...+ +.|..+|.. . ...... .+.
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~-~~~ 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVD-TAF 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEE-EEE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEEEec-cCC
Confidence 99988 554332 211 12357899999999888777654 567777764 2 222222 223
Q ss_pred eeEEEEEEc----CCCCC-EEEEEECCCcEEEEeCC-CCC-----ceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCe
Q psy4653 143 HYVMQIVIN----PKDNN-TFASASLDRTVKVWQLG-SAS-----PNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRL 210 (229)
Q Consensus 143 ~~v~~~~~~----~~~~~-~l~s~~~d~~i~~wd~~-~~~-----~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~ 210 (229)
.....++++ | ++. ++++...++.|.+||.. .+. ....+..+. .....+++. .++.++++...++.
T Consensus 172 ~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d--~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 172 QFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD--EDNNLLVANWGSSH 248 (314)
T ss_dssp SSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB--TTCCEEEEEETTTE
T ss_pred CCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC--CCCCEEEEEcCCCE
Confidence 345677787 7 454 45555678899999976 332 112223332 446667764 45667777778899
Q ss_pred EEEEECCCCeEEEeec
Q psy4653 211 VKIWDYQNKTCVQTLE 226 (229)
Q Consensus 211 i~iwd~~~~~~~~~~~ 226 (229)
|.+||.++++.+..+.
T Consensus 249 i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIR 264 (314)
T ss_dssp EEEECTTCBSCSEEEE
T ss_pred EEEEcCCCCcEeEEEe
Confidence 9999998666554443
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=2.2e-10 Score=89.71 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=132.9
Q ss_pred ceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 17 RVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 17 ~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
=-.+..|+|++. .+++...++.|..||..+++. ..+. ....+.++.+.++++++++ . +..|.+||.++++.....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 346888999655 555556789999999998765 3333 3457899999999996555 3 567999999876543222
Q ss_pred cc----CCCceeEEEEcCCCCEEEEEeCC---------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC-EEEEE
Q psy4653 96 EA----HSDYVRCVAVHPTQPFLLTSSDD---------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFASA 161 (229)
Q Consensus 96 ~~----h~~~i~~v~~~~~~~~~~s~~~d---------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~ 161 (229)
.. ....++.++++|++.++++...+ ..-.||.+......... .........++|+| ++. ++++.
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-~~~~~~pngi~~sp-dg~~lyv~~ 167 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-FDQVDISNGLDWSL-DHKIFYYID 167 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-EEEESBEEEEEECT-TSCEEEEEE
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-eeccccccceEEcC-CCCEEEEec
Confidence 11 12357889999999977755322 23345554332222222 22333457889998 455 55667
Q ss_pred ECCCcEEEEeCC--CCCce-----EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653 162 SLDRTVKVWQLG--SASPN-----FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 162 ~~d~~i~~wd~~--~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
+.++.|.+||+. ++... ..+..+......+++. .++++.++...++.|..||..+++.+.++..+
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d--~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID--AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB--TTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC--CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 778899999973 44321 1122223445667763 45567777778889999999999888877643
No 202
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.46 E-value=2.5e-14 Score=115.96 Aligned_cols=188 Identities=11% Similarity=0.073 Sum_probs=111.5
Q ss_pred CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-cee-
Q psy4653 26 TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-YVR- 103 (229)
Q Consensus 26 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~- 103 (229)
++..+++++.||.|..||..+|+.+..+.. .++.+..+..++..+++++.|+.|..||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 467899999999999999999999988876 4555666667787888889999999999988887666543321 111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec
Q psy4653 104 CVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183 (229)
Q Consensus 104 ~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 183 (229)
+..+. .+..+++++.|+.|+.||.+++... ..+..+. .....| ++..+++++.|+.|+.||.++++.++.+..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQ-QTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEE-EEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 11111 3445677788999999999876432 2232222 123345 567888889999999999999988777653
Q ss_pred CCCceEEEEEEeCCC---cCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 184 HEKGVNCVDYYHGGD---KPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 184 h~~~v~~~~~~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+. .....+ .++ ...++.++.||.|..||.++++.+-+.+
T Consensus 159 ~~--~~~~~~--~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 159 FD--YAASLP--EDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EE--ECCBCC--CCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred cc--ccCccc--cCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 21 111112 111 1357778999999999999998765543
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=4e-11 Score=104.69 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=131.1
Q ss_pred ccCCCceEEEEEccCCCeEEEEEe-----cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC-------
Q psy4653 12 TARSDRVKCCDLHPTEPWMLASLY-----NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM------- 79 (229)
Q Consensus 12 ~~~~~~v~~~~~~p~~~~l~~~~~-----dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~------- 79 (229)
.+|+..+..++||||++.|+.+.. ...|++||+.+++.+... ........+.|+ +++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 456678999999999998886542 247999999999865431 111113567899 999888887773
Q ss_pred ------eEEEEECCCcc----eEEEecc-CCCceeEEEEcCCCCEEE-EEeC---CCcEEEEecCCceeeeeeeecceee
Q psy4653 80 ------QVCVFNYNTLE----RFHSFEA-HSDYVRCVAVHPTQPFLL-TSSD---DMLIKLWNWEKAWACQQVFEGHTHY 144 (229)
Q Consensus 80 ------~i~iwd~~~~~----~~~~~~~-h~~~i~~v~~~~~~~~~~-s~~~---d~~v~lwd~~~~~~~~~~~~~~~~~ 144 (229)
+|.+|++.+.. .+..... |...+..+.|+|++++++ +.+. +..|+++|+.........+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 48999987654 2332333 445678899999999774 3332 3589999987653223333444444
Q ss_pred EEEEEEcCCCCCEEEEEECC---CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCC--eEEEEECC
Q psy4653 145 VMQIVINPKDNNTFASASLD---RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQ 217 (229)
Q Consensus 145 v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~i~iwd~~ 217 (229)
.... +++..+.+++....| +.|..+|+.++.. ...+..|...+. .|.+.++ .++++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~-~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG-YLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT-EEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC-EEEEEEEECCeeEEEEEECC
Confidence 4333 334334444454443 6799999987654 345666665554 5554433 2444445565 58889987
Q ss_pred CCeEEEee
Q psy4653 218 NKTCVQTL 225 (229)
Q Consensus 218 ~~~~~~~~ 225 (229)
.+. ...+
T Consensus 359 g~~-~~~l 365 (693)
T 3iuj_A 359 GKR-VREV 365 (693)
T ss_dssp SCE-EEEE
T ss_pred CCe-eEEe
Confidence 554 3444
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=2.9e-10 Score=89.08 Aligned_cols=178 Identities=8% Similarity=0.057 Sum_probs=120.7
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec----CcCeEEEEEcCCCCEEEEEeC---------CCe
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSD---------DMQ 80 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~~---------d~~ 80 (229)
....+.+++++|++.++++ . ++.|.+||..+++........ ...+..+.+.|+|++.++... ...
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 3467999999999994444 4 678999999987654333221 123788999999997665432 123
Q ss_pred EEEEECCCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecC--Cceee-eee---eecceeeEEEEEEcCC
Q psy4653 81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWE--KAWAC-QQV---FEGHTHYVMQIVINPK 153 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~--~~~~~-~~~---~~~~~~~v~~~~~~~~ 153 (229)
..+|.+.....+..+..+....+.++|+|+++.+ ++.+.++.|.+||+. .+... .+. +..+......+.+.+
T Consensus 130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~- 208 (297)
T 3g4e_A 130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA- 208 (297)
T ss_dssp EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-
T ss_pred cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-
Confidence 4566554322333333333456799999999866 556667899999973 32111 112 222334567788887
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEE
Q psy4653 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY 194 (229)
Q Consensus 154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 194 (229)
++.+.++...++.|..||..+++.+..+..+...+.+++|.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 57788887788899999998888888887776678899985
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=8.1e-10 Score=85.76 Aligned_cols=199 Identities=7% Similarity=-0.049 Sum_probs=137.9
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 91 (229)
......++.+.+++...++...++.|.+||.. ++... +.. ....+..+.+.+++++.++...++.|..+|.+ ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 34578999999999877777778999999988 55433 322 22468899999999988877778889999987 443
Q ss_pred E-EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653 92 F-HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170 (229)
Q Consensus 92 ~-~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 170 (229)
. .........+.++++.+++.++++...++.|..+|.. +.............+..+.+.+ ++.++++...++.|..+
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence 2 2222234568899999999988887778899999986 3222222222334577888887 56777776667889999
Q ss_pred eCCCCCceE-EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 171 QLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 171 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
|. .++... ....+...+..+++. +++.+.++....+.|..||. +++.
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSG--NDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEEC--CCCCEEEEccCCCEEEEEcC-CCcE
Confidence 98 443322 222333456777774 35556666666778999998 4443
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=9.3e-10 Score=85.41 Aligned_cols=195 Identities=5% Similarity=-0.021 Sum_probs=135.2
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF 92 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~ 92 (229)
...+.++++.+++..+++...++.|..+|.. ++.. .+.. ....+..+.+.+++++.++...++.|..+|.+ ++..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence 3578999999999877776668899999988 5543 3332 23568899999999988887778889999987 4443
Q ss_pred E-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653 93 H-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171 (229)
Q Consensus 93 ~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 171 (229)
. .+........++++.+++.++++...++.|..+|.. ..............+..+.+.+ ++.++++....+.|..+|
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEEC
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEc
Confidence 2 223334578899999999977777667899999983 3222222223334577888887 567777666677899999
Q ss_pred CCCCCceE-EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653 172 LGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217 (229)
Q Consensus 172 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~ 217 (229)
. .+.... .+..+...+.++++. +++.+.++...++.|..||..
T Consensus 216 ~-~g~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 216 T-TGEISEYDIPTPNARPHAITAG--KNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT
T ss_pred C-CCcEEEEECCCCCCCceEEEEC--CCCCEEEeccCCCeEEEECCC
Confidence 8 333222 223334557777774 345566666667899999984
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=3.2e-11 Score=97.79 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=105.3
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF 92 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~ 92 (229)
.+.. |..++| ++.+|+++ .++.|++||+.+.........++.++.++.+.+.. +++++.||.+.+||+..+...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc
Confidence 4556 999999 88999988 88999999998877666666777788888877653 888899999999999876653
Q ss_pred EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee-eeee------e---cceeeEEEEEEcCCCCCEEEE
Q psy4653 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC-QQVF------E---GHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~~l~s 160 (229)
. +...|+|++|||.| ++.|..||++++|+.+..... ...+ . +|...|..+.|.+ ++..+++
T Consensus 160 ~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~ 230 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV 230 (388)
T ss_dssp E----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence 2 44689999999999 678899999999987655311 2233 2 3667899999987 4555554
No 208
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.40 E-value=2.3e-10 Score=91.02 Aligned_cols=196 Identities=10% Similarity=-0.027 Sum_probs=132.7
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
+....+.+. .+...++...++.|.+||..+++.+..+.. ......+.+++++++.++...++.|.+||.++++....+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 446777774 444555555689999999999999888753 346788999888855555447899999999998877665
Q ss_pred ccCC-----CceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-----
Q psy4653 96 EAHS-----DYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD----- 164 (229)
Q Consensus 96 ~~h~-----~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----- 164 (229)
.... .....+++ .++..+++.. .++.|.++|+.+......+..+ .....+.++| ++.+++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~-dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDK-YNKMWTITDGGYEGSP 197 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECT-TSEEEEEBCCBCTTCS
T ss_pred EcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcC-CCCEEEEECCCccCCc
Confidence 5332 14456777 3444444443 4889999999876443333222 2235677777 56777766554
Q ss_pred -----CcEEEEeCCCCCceEEEecC-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 165 -----RTVKVWQLGSASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 165 -----~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
+.|.++|..+.+....+.-. ......+++. +++..|..+.. .|.+||..+++.
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~--~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN--GTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC--TTSCEEEEESS--SEEEEETTCSSC
T ss_pred cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe--cCCCEEEEEcc--EEEEEECCCCce
Confidence 78999999887766555432 2356778884 34455655444 899999988765
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.37 E-value=2.4e-09 Score=86.76 Aligned_cols=196 Identities=10% Similarity=-0.015 Sum_probs=126.8
Q ss_pred EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEec-------CcCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653 20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVC-------DLPVRAAKFVPRKNWIVTGSD--DMQ 80 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~--d~~ 80 (229)
.+.++||++.++++. .++.|.+||..+.+.+..+... ...-..+.|+|+|++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 889999999999886 3688999999998887766542 122357899999999998874 478
Q ss_pred EEEEECCCcceEEE-eccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeee-----------------------
Q psy4653 81 VCVFNYNTLERFHS-FEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQ----------------------- 135 (229)
Q Consensus 81 i~iwd~~~~~~~~~-~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~----------------------- 135 (229)
|.++| ++++.+.. +.... |+.+.|+++ .+++.+.|+++.++|. .+....
T Consensus 150 v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888776 54321 233344432 3344455555555555 221110
Q ss_pred --------------------------eeeec----------ceeeEEEEEEcCCCCCEEEEEEC----------CCcEEE
Q psy4653 136 --------------------------QVFEG----------HTHYVMQIVINPKDNNTFASASL----------DRTVKV 169 (229)
Q Consensus 136 --------------------------~~~~~----------~~~~v~~~~~~~~~~~~l~s~~~----------d~~i~~ 169 (229)
..+.- .......+.++|. +..+..+.. ++.|.+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d-~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS-SDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC-CCEEEEEeccCCcccccCCCCeEEE
Confidence 00000 0001112456663 444443322 357999
Q ss_pred EeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECCCCeEEEee
Q psy4653 170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~~ 225 (229)
.|..+.+.+..+... .....++|.+ +++ +++++. .++.|.++|..+++.++++
T Consensus 303 ID~~t~~vv~~i~~g-~~p~~i~~s~--Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLVGQTSSQISLG-HDVDAISVAQ--DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCEEEEEEECC-CCcCeEEECC--CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999988887777542 2467788854 555 666666 5899999999999999883
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.36 E-value=9.5e-11 Score=103.01 Aligned_cols=199 Identities=15% Similarity=0.040 Sum_probs=132.1
Q ss_pred eEEEEEccCCCeEEEEEecCe--------------EEEEEcCCCCe--EEEEEecC--cCeEEEEEcCCCCEEEEEeCCC
Q psy4653 18 VKCCDLHPTEPWMLASLYNGH--------------VHVWNHETNQN--VKSFEVCD--LPVRAAKFVPRKNWIVTGSDDM 79 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~~dg~--------------v~~wd~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d~ 79 (229)
+..++|+|| +.|+.+..++. |.+|++.+++. ...+.... ..+..+.|+|+|++|+..+.++
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG 289 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence 357899999 98998886654 89999988763 23333322 2478999999999888777543
Q ss_pred -----eEEEEECCCc--ceEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCc-eeeeeeeecceeeEEE
Q psy4653 80 -----QVCVFNYNTL--ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKA-WACQQVFEGHTHYVMQ 147 (229)
Q Consensus 80 -----~i~iwd~~~~--~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~-~~~~~~~~~~~~~v~~ 147 (229)
.|.+||++++ +....+..+.+.+.... +|++..|+..+.+ +.|.+||+... .....++..+...+..
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence 8999998776 31455555555555543 4888877766653 45999998764 2334455555555656
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEeCC-CCCceEEEecC-CCceEEEEEEeCCCcCEEEEee---CCCeEEEEECCCCeE
Q psy4653 148 IVINPKDNNTFASASLDRTVKVWQLG-SASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGA---DDRLVKIWDYQNKTC 221 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~ 221 (229)
+.+. ++.++++...|+..++|.+. .+.....+..+ ...+..+++.+.+ ..++++.+ ..++|.+||+.+++.
T Consensus 369 ~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~-~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 369 VGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD-RHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC-SCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC-CEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6665 45688888899988888654 34444555542 4557777775432 23443333 458899999998863
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=3e-09 Score=84.49 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=125.0
Q ss_pred eEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653 18 VKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96 (229)
Q Consensus 18 v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 96 (229)
..+..|+|++. .+++...++.|..||..+++.. .+. ....+.++.+.++++++++. .+ .|.+||.++++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 46789999855 4555567899999999987543 333 34578999999999877654 44 48999988776432221
Q ss_pred c----CCCceeEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE-EEEEECCC
Q psy4653 97 A----HSDYVRCVAVHPTQPFLLTSSD------DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-FASASLDR 165 (229)
Q Consensus 97 ~----h~~~i~~v~~~~~~~~~~s~~~------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~ 165 (229)
. ....++.++++|++.++++... .+.|..++ .+ ...... ........+.|+| ++.. +++...++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~-~~~~~~~~i~~s~-dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLF-ADISIPNSICFSP-DGTTGYFVDTKVN 201 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEE-EEESSEEEEEECT-TSCEEEEEETTTC
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEee-CCCcccCCeEEcC-CCCEEEEEECCCC
Confidence 1 1235889999999997765542 23455555 22 222222 2223456788988 5654 45556678
Q ss_pred cEEEEeCC--CC-Cc--eEE---EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 166 TVKVWQLG--SA-SP--NFT---LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 166 ~i~~wd~~--~~-~~--~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
.|.+||+. ++ .. ... +.........+.+ ..++.+.++...++.|..||. +++.+..+.
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~--d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC--DAEGHIWNARWGEGAVDRYDT-DGNHIARYE 267 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE--CTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEE--CCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence 99999985 44 21 111 2222334555665 445566666667789999998 466666554
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=2.2e-09 Score=88.02 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=126.0
Q ss_pred EEEccCCCeEEEEEecC--eEEEEEcCCCCeEEEEE---e-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653 21 CDLHPTEPWMLASLYNG--HVHVWNHETNQNVKSFE---V-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94 (229)
Q Consensus 21 ~~~~p~~~~l~~~~~dg--~v~~wd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 94 (229)
++|+|++..|+++..++ .|.+++..++.....+. . ......++.++|++..|..+..++.|..||.+++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999999988765 89999988766544431 1 234578899999555555577788999999987653222
Q ss_pred ----eccCCCce--eEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecc---------------eeeEEEEEEcC
Q psy4653 95 ----FEAHSDYV--RCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGH---------------THYVMQIVINP 152 (229)
Q Consensus 95 ----~~~h~~~i--~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~---------------~~~v~~~~~~~ 152 (229)
..++...- ..++|+|+ +.++++-...+.|+.|+.... ...+.++ -.....+++++
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~ 332 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE 332 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence 22222222 39999995 556667777899999997643 1222222 12367889988
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCCCCceEEEecC---------------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653 153 KDNNTFASAS-LDRTVKVWQLGSASPNFTLEGH---------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216 (229)
Q Consensus 153 ~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~ 216 (229)
++.++++-. .+++|+.|++..+. +..+.++ -.....+++. +++.++++-..++.|+.+++
T Consensus 333 -dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd--~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 333 -DGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYD--GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEEC--SSSEEEEEESTTCEEEEEEE
T ss_pred -CCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEc--CCCCEEEEECCCCeEEEEEe
Confidence 577888888 89999999976654 3334333 1235566763 34556666677777776654
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=1.2e-08 Score=80.95 Aligned_cols=186 Identities=10% Similarity=0.053 Sum_probs=118.8
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec----CcCeEEEEEcCCCCEEEEEeC------CCeEEEE
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSD------DMQVCVF 84 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~~------d~~i~iw 84 (229)
...+.++.++|++.+++++ ...|.+||..+++........ ...+..+.++|+|++.++... .+.|..+
T Consensus 89 ~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 4579999999999876654 445999999888764332211 124788999999997665432 2345555
Q ss_pred ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecC--Cc-eee-eeee---ecceeeEEEEEEcCCCCC
Q psy4653 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWE--KA-WAC-QQVF---EGHTHYVMQIVINPKDNN 156 (229)
Q Consensus 85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~--~~-~~~-~~~~---~~~~~~v~~~~~~~~~~~ 156 (229)
+ +++ +..+..+....+.++|+|+++.++ +.+.++.|.+||+. .+ ... ...+ .........+.+.+ ++.
T Consensus 167 ~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~ 242 (326)
T 2ghs_A 167 A--KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGH 242 (326)
T ss_dssp E--TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSC
T ss_pred e--CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCC
Confidence 5 333 333333334567999999998664 55567899999985 33 110 1122 12233456778876 577
Q ss_pred EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEE-EEeeCC
Q psy4653 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL-ISGADD 208 (229)
Q Consensus 157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d 208 (229)
+.++...++.|..||. .++.+..+..+...+.+++|. .++...| ++...+
T Consensus 243 lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~-g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 243 IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI-GPDASRLLVTSARE 293 (326)
T ss_dssp EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE-STTSCEEEEEEBCT
T ss_pred EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe-cCCCCEEEEEecCC
Confidence 7777667789999998 566666676666678888885 1333334 444443
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=5.7e-09 Score=85.66 Aligned_cols=203 Identities=9% Similarity=-0.008 Sum_probs=128.1
Q ss_pred EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEec-------CcCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653 20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVC-------DLPVRAAKFVPRKNWIVTGSD--DMQ 80 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~--d~~ 80 (229)
.+.++||++.++++. .++.|.++|..+.+.+..+... ...-..+.|+|+|++|.++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998886 4679999999999998887643 123456889999999988874 578
Q ss_pred EEEEECCCcceEEEeccCCC-------ceeEEEEcCCCCEEEEEeC----------------------------------
Q psy4653 81 VCVFNYNTLERFHSFEAHSD-------YVRCVAVHPTQPFLLTSSD---------------------------------- 119 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~~-------~i~~v~~~~~~~~~~s~~~---------------------------------- 119 (229)
|.+.|..+++.+..+..... .-..+.+++++++++....
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999887766643110 0011334444443332222
Q ss_pred ---CCcEEEEecCCcee-eeeeee---------c-ceeeEEEEEEcCCCCCEEEEEE---------CCCcEEEEeCCCCC
Q psy4653 120 ---DMLIKLWNWEKAWA-CQQVFE---------G-HTHYVMQIVINPKDNNTFASAS---------LDRTVKVWQLGSAS 176 (229)
Q Consensus 120 ---d~~v~lwd~~~~~~-~~~~~~---------~-~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~ 176 (229)
.+.|.+.|+..... ....+. + .......+.++|....++++.. .++.|.+.|..+.+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 33333333321100 000000 0 0000112466764333444433 13579999999998
Q ss_pred ceEEEecCCCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECCCCeEEEee
Q psy4653 177 PNFTLEGHEKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 177 ~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~~ 225 (229)
.+..+.... ....+.|. ++++ +++++. .++.|.++|..+++.++++
T Consensus 362 vv~~I~vg~-~P~gia~s--pDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 362 RINKIELGH-EIDSINVS--QDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEEE-EECEEEEC--CSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEECCC-CcCeEEEc--cCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 888775422 36677884 3555 677766 6999999999999999987
No 215
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=2.4e-08 Score=80.80 Aligned_cols=144 Identities=15% Similarity=0.022 Sum_probs=96.1
Q ss_pred EEccCCCeEEEEEe--cC---eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCeEEEEEC
Q psy4653 22 DLHPTEPWMLASLY--NG---HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQVCVFNY 86 (229)
Q Consensus 22 ~~~p~~~~l~~~~~--dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~i~iwd~ 86 (229)
-..|+++.+++... .+ .|.++|..+++.+..+.....+ .+.++|+++.|.++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34477877777653 33 8899999999988877655444 899999999988886 3678999999
Q ss_pred CCcceEEEeccC-------CCceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653 87 NTLERFHSFEAH-------SDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157 (229)
Q Consensus 87 ~~~~~~~~~~~h-------~~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (229)
.+.+.+..+... ...-..+.|+|++++++.+.. +++|.++| .........+... .. +.+.|.....
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPST 179 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCce
Confidence 988877665432 122347999999999988764 57899999 7764433302211 11 2222333344
Q ss_pred EEEEECCCcEEEEeC
Q psy4653 158 FASASLDRTVKVWQL 172 (229)
Q Consensus 158 l~s~~~d~~i~~wd~ 172 (229)
+++.+.|+++.++|.
T Consensus 180 ~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH 194 (373)
T ss_pred EEEEcCCCCEEEEEC
Confidence 455555666665555
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.25 E-value=1.8e-09 Score=87.27 Aligned_cols=192 Identities=15% Similarity=0.054 Sum_probs=132.5
Q ss_pred EEEEccCCCeEEEEEe-----cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCeEEEE
Q psy4653 20 CCDLHPTEPWMLASLY-----NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQVCVF 84 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~~-----dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~i~iw 84 (229)
.....|++..+++... ++.|.+.|..+++.+..+.....+ . +.++|+|+.|.+++ .++.|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456799998888865 689999999999999998877666 4 99999999887765 35679999
Q ss_pred ECCCcceEEEeccCC-------CceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653 85 NYNTLERFHSFEAHS-------DYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155 (229)
Q Consensus 85 d~~~~~~~~~~~~h~-------~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (229)
|..+.+.+..+.... ..-..+.|+|++++++.+.. ++.|.++|+........+-... . ..+.|...
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~--~~~~P~g~ 189 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C--YHIFPTAP 189 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEET
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---c--ceeecCCC
Confidence 999998887764321 13457999999998887764 6899999998875443332111 1 11224455
Q ss_pred CEEEEEECCCcEEEEeCCC-CCceEEEecCC----CceE-EEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 156 NTFASASLDRTVKVWQLGS-ASPNFTLEGHE----KGVN-CVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 156 ~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~----~~v~-~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
..+++.+.||++.+.++.. ++.......+. ..+. ...|. ..++.+++ .+.+|.|.+.|..++.
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-QKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-TTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE-cCCCcEEE-EeCCCEEEEEECCCCc
Confidence 6788889999999999876 44322121111 1121 12333 23444444 5668999999997653
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.21 E-value=1.7e-09 Score=87.43 Aligned_cols=204 Identities=12% Similarity=0.083 Sum_probs=128.2
Q ss_pred EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEecC-------cCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653 20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVCD-------LPVRAAKFVPRKNWIVTGSD--DMQ 80 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~sg~~--d~~ 80 (229)
.+.++|+++.++++. .++.|.+||..+.+.+..+.... ..-..+.|+|+|++|.++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999998875 36789999999999988876532 23567899999999888864 688
Q ss_pred EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc----eeeEE-EEEEcCCCC
Q psy4653 81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH----THYVM-QIVINPKDN 155 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~----~~~v~-~~~~~~~~~ 155 (229)
|.++|.++++.+..+.... . ...+....+.+++.+.||++.+.++............+ ..++. ...|.+.++
T Consensus 162 VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 9999999999888775321 1 12232334567788889999888886532221111111 11111 123433355
Q ss_pred CEEEEEECCCcEEEEeCCCCCc--eEEEe---------c-CCCceEEEEEEeCCCcCEEEEee--------CCCeEEEEE
Q psy4653 156 NTFASASLDRTVKVWQLGSASP--NFTLE---------G-HEKGVNCVDYYHGGDKPYLISGA--------DDRLVKIWD 215 (229)
Q Consensus 156 ~~l~s~~~d~~i~~wd~~~~~~--~~~~~---------~-h~~~v~~~~~~~~~~~~~l~s~s--------~d~~i~iwd 215 (229)
.+++ .+.++++.+.|+.+... ...+. + .......+++.+.++.-|++... ..+.|-+.|
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 4444 56689999999976542 11111 0 11223345554332221232221 125799999
Q ss_pred CCCCeEEEeecc
Q psy4653 216 YQNKTCVQTLES 227 (229)
Q Consensus 216 ~~~~~~~~~~~~ 227 (229)
.++++.++++..
T Consensus 318 ~~t~kv~~~i~v 329 (386)
T 3sjl_D 318 AKTGERLAKFEM 329 (386)
T ss_dssp TTTCCEEEEEEE
T ss_pred CCCCeEEEEEEC
Confidence 999999998764
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.20 E-value=1.8e-08 Score=79.09 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=125.1
Q ss_pred CCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653 15 SDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93 (229)
Q Consensus 15 ~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 93 (229)
..-.....|+|+++ .++++..++.|..|+. +++ ...+......+..+.++++|+++++...++.|..|+.+ ++. .
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~ 119 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-H 119 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-E
Confidence 34567889999998 5566667899999998 444 34555555678999999999977776667889999976 442 2
Q ss_pred EeccC-----CCceeEEEEcCCCCEEEE----EeC-------------CCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653 94 SFEAH-----SDYVRCVAVHPTQPFLLT----SSD-------------DMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN 151 (229)
Q Consensus 94 ~~~~h-----~~~i~~v~~~~~~~~~~s----~~~-------------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (229)
.+..+ ...++.+++++++.+.++ |.. .+.|..+|...+. ..... .......++|+
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE--EESSEEEEEEC
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEEEe--cCCCCcceEEc
Confidence 22111 234678999999998886 321 2467777764432 22222 33345678899
Q ss_pred CCCCCEEEEEECC------CcEEEEeCCCCCceE---EE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 152 PKDNNTFASASLD------RTVKVWQLGSASPNF---TL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 152 ~~~~~~l~s~~~d------~~i~~wd~~~~~~~~---~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
| ++..|+.+... +.|.+|++.... +. .+ .........+.+ ..+++ |..+..+ .|.+||.. ++.
T Consensus 197 p-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~--d~~G~-lwv~~~~-gv~~~~~~-g~~ 269 (305)
T 3dr2_A 197 P-DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCV--DRGGW-LWSSSGT-GVCVFDSD-GQL 269 (305)
T ss_dssp T-TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEE--CTTSC-EEECCSS-EEEEECTT-SCE
T ss_pred C-CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEE--CCCCC-EEEecCC-cEEEECCC-CCE
Confidence 8 56655555544 789999986543 21 11 111222344555 34555 4444444 49999984 556
Q ss_pred EEeec
Q psy4653 222 VQTLE 226 (229)
Q Consensus 222 ~~~~~ 226 (229)
+.++.
T Consensus 270 ~~~~~ 274 (305)
T 3dr2_A 270 LGHIP 274 (305)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=1.2e-08 Score=88.99 Aligned_cols=188 Identities=10% Similarity=0.065 Sum_probs=125.8
Q ss_pred cCeEEEEEcCCCCeEEEEEecC-------------------------------cCeEEEEEcCCCCEEEEEeCCCe----
Q psy4653 36 NGHVHVWNHETNQNVKSFEVCD-------------------------------LPVRAAKFVPRKNWIVTGSDDMQ---- 80 (229)
Q Consensus 36 dg~v~~wd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~sg~~d~~---- 80 (229)
+|.|..||..+|+.+..+.... .....+.+.|+++.+..++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 7899999999999988875311 01135788998999999988764
Q ss_pred ---------------EEEEECCCcceEEEecc--CC-------CceeEEEEcCCCC---EEEEEeCCCcEEEEecCCcee
Q psy4653 81 ---------------VCVFNYNTLERFHSFEA--HS-------DYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKAWA 133 (229)
Q Consensus 81 ---------------i~iwd~~~~~~~~~~~~--h~-------~~i~~v~~~~~~~---~~~s~~~d~~v~lwd~~~~~~ 133 (229)
|..+|.++++.+..++. |. ..........++. .++.++.+|.++++|.++++.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999998877654 21 1112223333454 688899999999999887754
Q ss_pred eeeeeecc---------------------------eee-----------EEEEEEcCCCCCEEEEEEC------------
Q psy4653 134 CQQVFEGH---------------------------THY-----------VMQIVINPKDNNTFASASL------------ 163 (229)
Q Consensus 134 ~~~~~~~~---------------------------~~~-----------v~~~~~~~~~~~~l~s~~~------------ 163 (229)
+...-... ... -..++++|.. .++.....
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeecccc
Confidence 32111000 000 0114566643 44444321
Q ss_pred ---------------------------------CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCe
Q psy4653 164 ---------------------------------DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210 (229)
Q Consensus 164 ---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 210 (229)
++.|+.||+.+++.++.++.+... ..-.+... +.+++.|+.||.
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~ta--gglvf~gt~dg~ 497 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTA--GNLVFEGSADGR 497 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEET--TTEEEEECTTSE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceEC--CCEEEEECCCCc
Confidence 478999999999999888765432 22233223 348889999999
Q ss_pred EEEEECCCCeEEEeecc
Q psy4653 211 VKIWDYQNKTCVQTLES 227 (229)
Q Consensus 211 i~iwd~~~~~~~~~~~~ 227 (229)
++.||.++|+.+-+++.
T Consensus 498 l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 498 VIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCccceeeeC
Confidence 99999999999877654
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=3.7e-09 Score=84.52 Aligned_cols=201 Identities=10% Similarity=0.053 Sum_probs=126.5
Q ss_pred CceEEEEEccCCCeEEEEE--ecCeEEEEEcCCCCeEEEEEe-------cCcCeEEEEEcCCCCEEEEEeC-----CCeE
Q psy4653 16 DRVKCCDLHPTEPWMLASL--YNGHVHVWNHETNQNVKSFEV-------CDLPVRAAKFVPRKNWIVTGSD-----DMQV 81 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~sg~~-----d~~i 81 (229)
.....++++|+++.+++.. .++.+.||.+.+++. ..|.. +-..+..+.+.+++++.++... +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5789999999999887753 234355666555543 33321 2246899999999887766544 5789
Q ss_pred EEEECCCcceEEEeccC------CCceeEEEEcCCCC-EEEEEe---CCCcEEEEecCCceeeeeeeecc----------
Q psy4653 82 CVFNYNTLERFHSFEAH------SDYVRCVAVHPTQP-FLLTSS---DDMLIKLWNWEKAWACQQVFEGH---------- 141 (229)
Q Consensus 82 ~iwd~~~~~~~~~~~~h------~~~i~~v~~~~~~~-~~~s~~---~d~~v~lwd~~~~~~~~~~~~~~---------- 141 (229)
.+||+++++.++.+... ......+++++++. .+++.. .++.|.+||+..+.. .+...+|
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCcccccccce
Confidence 99999988866655432 23568999998654 445655 678999999875432 2222211
Q ss_pred -------------------eeeEEEEEEcCCCCCEEEEEECCC-cEEEEeCC---CCC-------ceEEEecCCCceEEE
Q psy4653 142 -------------------THYVMQIVINPKDNNTFASASLDR-TVKVWQLG---SAS-------PNFTLEGHEKGVNCV 191 (229)
Q Consensus 142 -------------------~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~---~~~-------~~~~~~~h~~~v~~~ 191 (229)
...+..++++| ++..|..+..++ .+..++.. ... ......++......+
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred eECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 01257789998 667666666555 44444421 110 001122333334456
Q ss_pred EEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 192 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
++. .++.++++...++.|.+||..+++.
T Consensus 254 a~d--~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 254 SID--KDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp EEC--TTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred EEC--CCCCEEEEccCCCeEEEEECCCCCE
Confidence 663 4567888888899999999955653
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=9.1e-09 Score=82.19 Aligned_cols=196 Identities=9% Similarity=-0.009 Sum_probs=125.9
Q ss_pred cCCCceEEEEEccCCCeEEEEEe-----cCeEEEEEcCCCCeEEEEEecC------cCeEEEEEcCCCCE-EEEEe---C
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLY-----NGHVHVWNHETNQNVKSFEVCD------LPVRAAKFVPRKNW-IVTGS---D 77 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~-----dg~v~~wd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~-l~sg~---~ 77 (229)
+|-..+..++++|++..+++... ++.|.+||+.+++.+..+.... .....+.+.+++.. .++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45568999999999986666554 5899999999998777765421 23588999986544 45555 5
Q ss_pred CCeEEEEECCCcceEEEeccCC-----------------------------CceeEEEEcCCCCEEEEEeCCC-cEEEEe
Q psy4653 78 DMQVCVFNYNTLERFHSFEAHS-----------------------------DYVRCVAVHPTQPFLLTSSDDM-LIKLWN 127 (229)
Q Consensus 78 d~~i~iwd~~~~~~~~~~~~h~-----------------------------~~i~~v~~~~~~~~~~s~~~d~-~v~lwd 127 (229)
++.|.+||+.+++..+.+..|. ..+..++|+|+++.++.+..++ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 7889999998776655443321 1357899999999877776655 454444
Q ss_pred cC---Cce----eeee--eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCC
Q psy4653 128 WE---KAW----ACQQ--VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGG 197 (229)
Q Consensus 128 ~~---~~~----~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~ 197 (229)
.. ... .... ...++.+....+++++ ++.++++...++.|.+||..+++....... +......+++. +
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~--~ 300 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG--S 300 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC--T
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC--C
Confidence 21 100 0000 1112333445678887 688999888899999999844442222221 23346778874 4
Q ss_pred CcCEEEEeeCCCeE
Q psy4653 198 DKPYLISGADDRLV 211 (229)
Q Consensus 198 ~~~~l~s~s~d~~i 211 (229)
++.++++.+..+.+
T Consensus 301 ~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 301 DGYLYFDCNQLHHS 314 (343)
T ss_dssp TSCEEEEECCGGGS
T ss_pred CCcEEEEeCccccc
Confidence 55666666644443
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=2.6e-09 Score=86.21 Aligned_cols=201 Identities=6% Similarity=-0.051 Sum_probs=121.4
Q ss_pred EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEecC-------cCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653 20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVCD-------LPVRAAKFVPRKNWIVTGSD--DMQ 80 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~sg~~--d~~ 80 (229)
.+.++|+++.++++. .++.|.+||+.+++.+..+.... ..-..+.++|+|++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999999986 37899999999999999887541 23467899999999998875 356
Q ss_pred EEE--EECCCcceEEEeccC------------------CCceeEEEE--------------------------cCCCCEE
Q psy4653 81 VCV--FNYNTLERFHSFEAH------------------SDYVRCVAV--------------------------HPTQPFL 114 (229)
Q Consensus 81 i~i--wd~~~~~~~~~~~~h------------------~~~i~~v~~--------------------------~~~~~~~ 114 (229)
+.+ +|..+ +..+... .+.+..+.. .+++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88865 2222110 000111111 1111222
Q ss_pred EEEeCCCcEEEEecCCce-eeeeeee-------cce---eeEEEEEEcCCCCCEEE-EEE---C-----CCcEEEEeCCC
Q psy4653 115 LTSSDDMLIKLWNWEKAW-ACQQVFE-------GHT---HYVMQIVINPKDNNTFA-SAS---L-----DRTVKVWQLGS 174 (229)
Q Consensus 115 ~s~~~d~~v~lwd~~~~~-~~~~~~~-------~~~---~~v~~~~~~~~~~~~l~-s~~---~-----d~~i~~wd~~~ 174 (229)
+..+. +.|.+.|+.... .....+. .+. .....+.++|. +..+. +.. . +..+.++|+.+
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d-g~~lyV~~~~~~~~~~~~~~~~~ViD~~t 303 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN-TDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT-TTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC-CCEEEEEeccccCcccccCCCEEEEECCC
Confidence 22222 445555553211 1111110 000 00011567774 44444 433 1 23566999999
Q ss_pred CCceEEEecCCCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECCCCeEEEeeccC
Q psy4653 175 ASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQNKTCVQTLESG 228 (229)
Q Consensus 175 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~~~~~ 228 (229)
.+.+..+.... ....+.|.+ ++. ++++.. .++.|.++|+.+++.+++++.+
T Consensus 304 ~~vv~~i~vg~-~p~gi~~s~--Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 304 GQTSGPISNGH-DSDAIIAAQ--DGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp CCEEECCEEEE-EECEEEECC--SSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CeEEEEEECCC-CcceEEECC--CCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 88777665432 466778754 443 566666 6999999999999999998754
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=1.6e-08 Score=79.35 Aligned_cols=192 Identities=10% Similarity=-0.010 Sum_probs=119.0
Q ss_pred cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEE----EeC-----
Q psy4653 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVT----GSD----- 77 (229)
Q Consensus 11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s----g~~----- 77 (229)
+..+...+..+.++|+++++++...++.|.+||.. ++......... ..+..+.+.++|++.++ |..
T Consensus 81 ~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~ 159 (305)
T 3dr2_A 81 LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG 159 (305)
T ss_dssp EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence 44455678999999999866555566899999986 55422221111 23567999999998886 442
Q ss_pred --------CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC------CcEEEEecCCceee-eeeee-cc
Q psy4653 78 --------DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD------MLIKLWNWEKAWAC-QQVFE-GH 141 (229)
Q Consensus 78 --------d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d------~~v~lwd~~~~~~~-~~~~~-~~ 141 (229)
.+.|..+|.++++..... .....+.++|+|+++.++.+... +.|.+|++...... ...+. ..
T Consensus 160 ~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~ 237 (305)
T 3dr2_A 160 CPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP 237 (305)
T ss_dssp CCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS
T ss_pred cccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC
Confidence 245777777655543322 33456789999999977766554 78999998644210 11111 11
Q ss_pred eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212 (229)
Q Consensus 142 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~ 212 (229)
......+.+.+ ++.+.++ ..+ .|.+|+. .++.+..+..+. .+.+++|. ++++.|..++.++..+
T Consensus 238 ~~~pdgi~~d~-~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~--~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 238 DGLPDGFCVDR-GGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFD--QAQQRLFITGGPCLWM 301 (305)
T ss_dssp SSCCCSEEECT-TSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEEC--TTSCEEEEEETTEEEE
T ss_pred CCCCCeEEECC-CCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEe--CCCCEEEEEcCCeEEE
Confidence 12233566776 5665554 444 4999998 455566665544 47777875 4555666666654333
No 224
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.12 E-value=6.2e-07 Score=68.79 Aligned_cols=206 Identities=9% Similarity=-0.052 Sum_probs=130.0
Q ss_pred ceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEE
Q psy4653 17 RVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHS 94 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~ 94 (229)
....++++|++..|+.+. ..+.|..++..+................+.+.++++.| ++-...+.|.+++.+.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 457899999776666554 67899999998765433332222467889999976544 4545567899999865332222
Q ss_pred eccCCCceeEEEEcCCCCEEE-EEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653 95 FEAHSDYVRCVAVHPTQPFLL-TSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171 (229)
Q Consensus 95 ~~~h~~~i~~v~~~~~~~~~~-s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 171 (229)
.......-..++++|++..+. +... .+.|..++++... ..............+++++..+.++++....+.|..+|
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 222224567899999655544 4433 4688888875432 11222122234677888885455667777788999999
Q ss_pred CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
.........+.. ......++. . ++.++++....+.|..+|..+++.+.++..
T Consensus 196 ~~g~~~~~~~~~-~~~P~gi~~--d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 196 PAQPGRRKVLEG-LQYPFAVTS--Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTEEEEEEEEEC-CCSEEEEEE--E-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred cCCCceEEEecC-CCCceEEEE--e-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 875433222332 223345554 2 334555666778999999999998888764
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.12 E-value=2.4e-08 Score=86.91 Aligned_cols=196 Identities=8% Similarity=0.035 Sum_probs=130.8
Q ss_pred CeEEEEEe------cCeEEEEEcCCCCeEEEEEecCcC--------------------------------eEEEEEcCCC
Q psy4653 28 PWMLASLY------NGHVHVWNHETNQNVKSFEVCDLP--------------------------------VRAAKFVPRK 69 (229)
Q Consensus 28 ~~l~~~~~------dg~v~~wd~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~ 69 (229)
..+++++. +|.|..+|..+|+.+..+...... ...+.++|++
T Consensus 175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~ 254 (677)
T 1kb0_A 175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL 254 (677)
T ss_dssp TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT
T ss_pred CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC
Confidence 34555543 799999999999998887643211 1357888999
Q ss_pred CEEEEEeCCC-------------------eEEEEECCCcceEEEecc--CC-------CceeEEEEcCCC---CEEEEEe
Q psy4653 70 NWIVTGSDDM-------------------QVCVFNYNTLERFHSFEA--HS-------DYVRCVAVHPTQ---PFLLTSS 118 (229)
Q Consensus 70 ~~l~sg~~d~-------------------~i~iwd~~~~~~~~~~~~--h~-------~~i~~v~~~~~~---~~~~s~~ 118 (229)
+.+..++.++ .|..+|.++++.+..++. |. .....+....++ ..++.++
T Consensus 255 ~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~ 334 (677)
T 1kb0_A 255 NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP 334 (677)
T ss_dssp TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC
T ss_pred CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC
Confidence 9988887664 599999999998877653 21 111223333466 5788999
Q ss_pred CCCcEEEEecCCceeeeeeeecc----------eeeE------------------------EEEEEcCCCCCEEEEEEC-
Q psy4653 119 DDMLIKLWNWEKAWACQQVFEGH----------THYV------------------------MQIVINPKDNNTFASASL- 163 (229)
Q Consensus 119 ~d~~v~lwd~~~~~~~~~~~~~~----------~~~v------------------------~~~~~~~~~~~~l~s~~~- 163 (229)
.+|.+.++|.++++.+...-... ..++ ..++++|. ..+++....
T Consensus 335 ~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~-~~~~yv~~~~ 413 (677)
T 1kb0_A 335 KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ-TGLVYLPAQN 413 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT-TTEEEEEEEE
T ss_pred CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC-CCEEEEeChh
Confidence 99999999988775432221110 0011 13456664 445554432
Q ss_pred ------------------------------------------CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCE
Q psy4653 164 ------------------------------------------DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY 201 (229)
Q Consensus 164 ------------------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 201 (229)
.+.|..||+.+++.++.++... .+....+... +.+
T Consensus 414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~--g~~ 490 (677)
T 1kb0_A 414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTA--GNV 490 (677)
T ss_dssp CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEET--TTE
T ss_pred cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcCcceEeC--CCE
Confidence 2789999999999888876432 2322233333 347
Q ss_pred EEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 202 LISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 202 l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
++.++.||.+++||.++++.+.++..
T Consensus 491 v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 491 VFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCcEEEEECCCCceeeeeeC
Confidence 88889999999999999999988764
No 226
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.03 E-value=1.9e-07 Score=71.74 Aligned_cols=206 Identities=6% Similarity=-0.048 Sum_probs=137.0
Q ss_pred hhhhhcccCCCc--eEEEEEccCCCeEEEEEe--cCeEEEEEcCCCCeEEEEEecCcC-eEEEEEcCCCCEE-EEEeCCC
Q psy4653 6 DIKRKLTARSDR--VKCCDLHPTEPWMLASLY--NGHVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWI-VTGSDDM 79 (229)
Q Consensus 6 ~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~--dg~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l-~sg~~d~ 79 (229)
++.+++. |... ...+.|+|++...++++. ++.|.+.|+.+++.+..+.....+ ...+.+. ++.| ++...++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 4555564 5433 579999998644444332 589999999999998887643322 2344444 4444 4445578
Q ss_pred eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-ee---eEEEEEEcCCCC
Q psy4653 80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-TH---YVMQIVINPKDN 155 (229)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~ 155 (229)
.+.++|.++.+.+..+..... ....+++++..++++..+++|.+.|.........+..+. .. ....+.+. ++
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg 162 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NG 162 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TT
T ss_pred EEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CC
Confidence 999999999988887753311 134466677777766678899999987764444433221 11 24566665 45
Q ss_pred CEEEEEECCCcEEEEeCCCCCceEEEecC-------------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 156 NTFASASLDRTVKVWQLGSASPNFTLEGH-------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
.+++....++.|.+-|..+++.+..+.-. ....+.++|.+. ...+++|+....+|..-++...
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~-~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE-NKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT-TTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC-CCEEEEECCCCCeEEEEEEecc
Confidence 56666556889999999999887777531 124578998643 3357888888899988887543
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.01 E-value=1.1e-07 Score=78.04 Aligned_cols=186 Identities=13% Similarity=0.031 Sum_probs=124.7
Q ss_pred cCCCeEEEEEe-c----CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCc
Q psy4653 25 PTEPWMLASLY-N----GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQVCVFNYNTL 89 (229)
Q Consensus 25 p~~~~l~~~~~-d----g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~i~iwd~~~~ 89 (229)
|+++.+++... + +.|.+.|..+.+.+..+.....+ .+.++|+++.|.++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46666666654 3 79999999999999999877777 899999999887776 3668999999999
Q ss_pred ceEEEeccC-------CCceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653 90 ERFHSFEAH-------SDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 90 ~~~~~~~~h-------~~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 160 (229)
+.+..+.-. ...-..+.|+|++++++++.. +++|.+.|+........+-.+.. ....|.....+++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~v~ 234 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVFYM 234 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEEEE
Confidence 888776432 122357899999999888764 57899999988754433322211 2223333467777
Q ss_pred EECCCcEEEEeCCCCCceEEE----ecCCCce-EEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 161 ASLDRTVKVWQLGSASPNFTL----EGHEKGV-NCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 161 ~~~d~~i~~wd~~~~~~~~~~----~~h~~~v-~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
.+.|+++.+.+...++..... .-...++ ..+.|. .++..++..+..+.|.+.|...+
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~--~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS--LRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC--TTTCEEEEEBTTSEEEEEEECSS
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec--CCCCEEEEEeCCCcEEEEeccCC
Confidence 888999888888555443221 1111111 123342 23334444456789999998654
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=6.2e-11 Score=95.91 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=82.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeeccee-eEE
Q psy4653 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH-YVM 146 (229)
Q Consensus 68 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~-~v~ 146 (229)
++..+++++.|+.|..||.++++.+..++. +.+.+..+.+++..+++++.|+.|+.||.+++..... +..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK-LPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE-CSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee-eeccCccccc
Confidence 577899999999999999999999888776 4555555667777888888999999999866533211 211111 010
Q ss_pred -EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 147 -QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 147 -~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
...+. .+..+++++.|+.++.||..+++.++.+..+.. ..+.+ .+..+++++.|+.|+.||.++++.+-.+
T Consensus 85 ~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred cCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 00111 245677788899999999999998887765431 22222 3457888999999999999998765443
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.97 E-value=1.9e-07 Score=75.16 Aligned_cols=189 Identities=10% Similarity=0.018 Sum_probs=118.7
Q ss_pred CCeEEEEEecCeEEEEEcCCCCeEEEEEecC---------cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653 27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCD---------LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA 97 (229)
Q Consensus 27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 97 (229)
+..+++++.++.|..+|..+++.+..+.... ..+.+. ....+..+..++.++.|..+|.++++.+..+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5568888889999999999999988776532 122222 222456788888999999999999998877654
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE-----EEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----MQIVINPKDNNTFASASLDRTVKVWQL 172 (229)
Q Consensus 98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~~~d~~i~~wd~ 172 (229)
........... +..++.++.++.|..+|.+++...-.. ....... ...... +..++.+..++.+..+|.
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEET
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEEC
Confidence 43322222222 347778888999999998776433222 1111100 111221 346777888999999999
Q ss_pred CCCCceEEEecCCCc----------eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 173 GSASPNFTLEGHEKG----------VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 173 ~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
.+++.++........ +...-.. ....+..++.++.+..+|.++++.+-..
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEeec
Confidence 998887766532110 1000000 1124666777788888888887765443
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.96 E-value=7e-07 Score=71.83 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=117.1
Q ss_pred eEEEEEecCeEEEEEcCCCCeEEEEEecCcCe-----EEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCc--
Q psy4653 29 WMLASLYNGHVHVWNHETNQNVKSFEVCDLPV-----RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDY-- 101 (229)
Q Consensus 29 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~-- 101 (229)
.+++++.++.|..+|..+++.+..+....... ..... .+..++.++.++.+..+|.++++.+.........
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 56667777788888888887776665432110 11111 1456778888999999999999887665432110
Q ss_pred --eeE---EEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653 102 --VRC---VAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174 (229)
Q Consensus 102 --i~~---v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 174 (229)
+.. +.-.| .+..++.++.++.+..+|.+++...-... ......+.. ++..+..++.++.+..+|..+
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---CCCEEEEEE---ETTEEEEEETTCCEEEEETTT
T ss_pred cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---CCCCCCceE---ECCEEEEEcCCCeEEEEECCC
Confidence 000 11111 24567777889999999987764332221 112233333 245677778899999999999
Q ss_pred CCceEEEecC-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 175 ASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 175 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
++.++..... .......... +..|..++.+|.+..+|.++++.+...+.
T Consensus 297 G~~~w~~~~~~~~~~~~~~~~----~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 297 GVTLWTQSDLLHRLLTSPVLY----NGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp CCEEEEECTTTTSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcEEEeecccCCCcccCCEEE----CCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 9888776522 2222222221 23688889999999999999998766543
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.96 E-value=1e-07 Score=83.18 Aligned_cols=196 Identities=9% Similarity=0.033 Sum_probs=118.8
Q ss_pred EEEEEccCCCeEEEEEecC-------------eEEEEEcCCCCe--EEEEEec---CcCeEEEEEcCCCCEEEEEeC---
Q psy4653 19 KCCDLHPTEPWMLASLYNG-------------HVHVWNHETNQN--VKSFEVC---DLPVRAAKFVPRKNWIVTGSD--- 77 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~~dg-------------~v~~wd~~~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~sg~~--- 77 (229)
..++|+ |++.|+.+..++ .|.+|++.++.. ...+... ......+.|+|+|++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 577899 999999998774 399999988653 3333332 224678999999998754432
Q ss_pred -CCeEEEEECCCcc-eEEEeccCCCceeEEEEcCCCCE-EEEEeCC---CcEEEEecCCcee-eeeeeecceeeEEEEEE
Q psy4653 78 -DMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHPTQPF-LLTSSDD---MLIKLWNWEKAWA-CQQVFEGHTHYVMQIVI 150 (229)
Q Consensus 78 -d~~i~iwd~~~~~-~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d---~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~ 150 (229)
+..|.++|+++++ ....+..+.+..... +++++.. ++.+..+ +.|..+|+..... ..+.+..|...+. .+
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV 333 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence 2489999987653 345555565555555 5565554 4455443 6799999876422 0123344444444 66
Q ss_pred cCCCCCEEEEEE-CCC--cEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeC---CCeEEEEECCCCeE
Q psy4653 151 NPKDNNTFASAS-LDR--TVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTC 221 (229)
Q Consensus 151 ~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~ 221 (229)
++. +..|+... .++ .|++||+..+ ....+.. ....+..+.+.+. ...++++.+. -++|..||+.+++.
T Consensus 334 s~~-g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d-~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 334 HSG-SGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHD-DPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTT-CSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEE-CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCC-CCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 663 55555544 454 6888888743 3344432 2334444444322 2234444332 27899999987753
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.94 E-value=5.8e-07 Score=68.51 Aligned_cols=191 Identities=11% Similarity=0.108 Sum_probs=123.6
Q ss_pred hhhhhcccCCCce--EEEEEccCCCeEEEEEecC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEE-eCCCe
Q psy4653 6 DIKRKLTARSDRV--KCCDLHPTEPWMLASLYNG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG-SDDMQ 80 (229)
Q Consensus 6 ~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~~ 80 (229)
++.+.|. |..+- ..+.|+ ++....+++.+| .|+..|+.+++.+........ .......+.++.|... ..++.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCE
Confidence 5556664 55444 889998 666666666666 999999999999888765443 3332233334544444 45788
Q ss_pred EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ce-eeEEEEEEcCCCCC
Q psy4653 81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HT-HYVMQIVINPKDNN 156 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~ 156 (229)
+.++|.++.+.+.++.... ....+.+++..++.+..+.+|.++|..+......+..+ .. ..+..+.+. ++.
T Consensus 109 v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~ 183 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGE 183 (262)
T ss_dssp EEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTE
T ss_pred EEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCE
Confidence 9999999999988876432 23344466777766666788999998766443333221 11 223445554 566
Q ss_pred EEEEEECCCcEEEEeCCCCCceEEEecC------------CCceEEEEEEeCCCcCEEEEe
Q psy4653 157 TFASASLDRTVKVWQLGSASPNFTLEGH------------EKGVNCVDYYHGGDKPYLISG 205 (229)
Q Consensus 157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~~~l~s~ 205 (229)
+++....+..|.+.|.++++.+..+.-. ....+.|+|.+.. ..+++||
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~-~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH-HRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT-TEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC-CEEEEEC
Confidence 6666557889999999999877766531 1245889996533 3355554
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.92 E-value=1.6e-07 Score=81.91 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=120.6
Q ss_pred EEEEEccCCCeEEEEEecC-------------------eEEEEEcCCCCeEEEEEecC---------cCeEEEEEcCCCC
Q psy4653 19 KCCDLHPTEPWMLASLYNG-------------------HVHVWNHETNQNVKSFEVCD---------LPVRAAKFVPRKN 70 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~~dg-------------------~v~~wd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~ 70 (229)
..++++|+...++.+..++ .|..||..||+.+..++... .+........+|+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 4678999999999988776 49999999999998886521 1222223333554
Q ss_pred ---EEEEEeCCCeEEEEECCCcceEEEeccCC----------------------------Cc-----------eeEEEEc
Q psy4653 71 ---WIVTGSDDMQVCVFNYNTLERFHSFEAHS----------------------------DY-----------VRCVAVH 108 (229)
Q Consensus 71 ---~l~sg~~d~~i~iwd~~~~~~~~~~~~h~----------------------------~~-----------i~~v~~~ 108 (229)
.++.++.+|.+.++|.++++.+...+... .. -..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999998764321100 00 1137888
Q ss_pred CCCCEEEEEeC---------------------------------------------CCcEEEEecCCceeeeeeeeccee
Q psy4653 109 PTQPFLLTSSD---------------------------------------------DMLIKLWNWEKAWACQQVFEGHTH 143 (229)
Q Consensus 109 ~~~~~~~s~~~---------------------------------------------d~~v~lwd~~~~~~~~~~~~~~~~ 143 (229)
|+..++++... ++.|..||+.+++..-+. ..+.
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~-~~~~- 475 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEV-PYVT- 475 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEE-EESS-
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEc-cCCC-
Confidence 88877776532 367889998877443332 2221
Q ss_pred eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCc-eEEEEEEeCCCcCEEEEeeC
Q psy4653 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG-VNCVDYYHGGDKPYLISGAD 207 (229)
Q Consensus 144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~ 207 (229)
+.....+.. .+.+++.|+.|+.++.||.++++.+++++..... ..-+.|...+ .+|++..+.
T Consensus 476 ~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G-~qyv~~~~G 538 (689)
T 1yiq_A 476 IFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG-EQYVTFMAG 538 (689)
T ss_dssp SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT-EEEEEEEEC
T ss_pred CccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC-EEEEEEEec
Confidence 111112233 4568888999999999999999999988754332 2335554333 346665443
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=4.7e-07 Score=71.17 Aligned_cols=184 Identities=14% Similarity=0.095 Sum_probs=120.9
Q ss_pred CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEE
Q psy4653 27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA 106 (229)
Q Consensus 27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~ 106 (229)
+..+.+++.++.|..+|.. ++....+......+.++...++++ |..|+.++.|..+|.+ ++....+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 5567888889999999999 777776665554556666666666 5567788999999998 777666665566677888
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCC
Q psy4653 107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186 (229)
Q Consensus 107 ~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~ 186 (229)
+.+++.+.++. +.|..+| .++.... ........+..+...+ ++ .+..++.++.+..+|. ++..+........
T Consensus 184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~-~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 184 IGKDGTIYFGS---DKVYAIN-PDGTEKW-NFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp ECTTCCEEEES---SSEEEEC-TTSCEEE-EECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred EcCCCEEEEEe---CEEEEEC-CCCcEEE-EEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 87777755544 7899999 4443322 2222233455566654 34 4555777888888874 4555555554333
Q ss_pred ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 187 ~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
.+..+.+ ..++ .|..++.+|.|..+|. +++.+..+
T Consensus 256 ~~~~~~~--~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~ 290 (330)
T 3hxj_A 256 IESSPVI--GNTD-TIYFGSYDGHLYAINP-DGTEKWNF 290 (330)
T ss_dssp CCSCCEE--CTTS-CEEEECTTCEEEEECT-TSCEEEEE
T ss_pred ccccceE--cCCC-eEEEecCCCCEEEECC-CCcEEEEE
Confidence 3333333 2233 4777888889999996 56655444
No 235
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.87 E-value=2.5e-06 Score=64.38 Aligned_cols=192 Identities=10% Similarity=0.038 Sum_probs=122.9
Q ss_pred hhhhhcccCCCc--eEEEEEccCCCeEEEEEec--CeEEEEEcCCCCeEEEEEecCcCe-EEEEEcCCCCEEEEEeCCCe
Q psy4653 6 DIKRKLTARSDR--VKCCDLHPTEPWMLASLYN--GHVHVWNHETNQNVKSFEVCDLPV-RAAKFVPRKNWIVTGSDDMQ 80 (229)
Q Consensus 6 ~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~d--g~v~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~sg~~d~~ 80 (229)
++.+.| .|... ...+.|++ +....+++.+ +.|+..|+.+++.+.......... -.+.+. .+++.+....++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 455666 36543 57999997 5555555654 499999999999988876544321 233343 2334444456789
Q ss_pred EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ce---eeEEEEEEcCCCCC
Q psy4653 81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HT---HYVMQIVINPKDNN 156 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~ 156 (229)
+.++|.++.+.+..+..... ...+.+++..++.+..+++|.++|.++......+-.+ +. ..++.+.+. ++.
T Consensus 87 v~v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~ 161 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGE 161 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTE
T ss_pred EEEEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCE
Confidence 99999999999888764332 2344456676766666889999998776443333221 11 223455553 566
Q ss_pred EEEEEECCCcEEEEeCCCCCceEEEecC------------C-CceEEEEEEeCCCcCEEEEee
Q psy4653 157 TFASASLDRTVKVWQLGSASPNFTLEGH------------E-KGVNCVDYYHGGDKPYLISGA 206 (229)
Q Consensus 157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h------------~-~~v~~~~~~~~~~~~~l~s~s 206 (229)
+++....+..|.+-|.++++.+..+.-. . ...+.|++.+. ...+++||-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~-~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE-HDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT-TTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC-CCEEEEECC
Confidence 6665556889999999999877766421 1 23588998653 334566553
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=3.7e-07 Score=79.48 Aligned_cols=197 Identities=9% Similarity=0.039 Sum_probs=129.0
Q ss_pred ceEEEEEccCCCeEEEEEecC-------------------eEEEEEcCCCCeEEEEEecCc---------CeEEEEEcCC
Q psy4653 17 RVKCCDLHPTEPWMLASLYNG-------------------HVHVWNHETNQNVKSFEVCDL---------PVRAAKFVPR 68 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg-------------------~v~~wd~~~~~~~~~~~~~~~---------~v~~~~~~~~ 68 (229)
....+.++|++..++.+..++ +|..+|..+|+.+..++.... ....+....+
T Consensus 244 ~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 244 MWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp CCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred cccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC
Confidence 335678999999888887654 599999999999988874211 1222333346
Q ss_pred C---CEEEEEeCCCeEEEEECCCcceEEEeccCC-----------Cce------------------------eEEEEcCC
Q psy4653 69 K---NWIVTGSDDMQVCVFNYNTLERFHSFEAHS-----------DYV------------------------RCVAVHPT 110 (229)
Q Consensus 69 ~---~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-----------~~i------------------------~~v~~~~~ 110 (229)
| +.++.++.+|.+.++|.++++.+..++... ..+ ..++|+|+
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 6 689999999999999999999876553211 001 15788998
Q ss_pred CCEEEEEeCC-------------------------------------------CcEEEEecCCceeeeeeeecceeeEEE
Q psy4653 111 QPFLLTSSDD-------------------------------------------MLIKLWNWEKAWACQQVFEGHTHYVMQ 147 (229)
Q Consensus 111 ~~~~~s~~~d-------------------------------------------~~v~lwd~~~~~~~~~~~~~~~~~v~~ 147 (229)
..++++...+ +.|..||+.+++..-+...+ .++..
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~ 481 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNG 481 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--CCCcC
Confidence 8877765432 67999998877443332211 12222
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCC-ceEEEEEEeCCCcCEEEEeeC----------------CCe
Q psy4653 148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK-GVNCVDYYHGGDKPYLISGAD----------------DRL 210 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~----------------d~~ 210 (229)
..+.. .+.+++.++.|+.+++||.++++.++.+..... ...-+.|...+ ..+++..+. .+.
T Consensus 482 g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G-~~~v~~~~G~~~~~~~~~~~~~~~~~~~ 559 (677)
T 1kb0_A 482 GTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG-RQYVSVAVGWGGVYGLAARATERQGPGT 559 (677)
T ss_dssp CEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT-EEEEEEEECCCHHHHHHCCSCSCCCCCE
T ss_pred cceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC-EEEEEEeccCCccccccccccccCCCCe
Confidence 22333 456778889999999999999999998874432 22334443332 345555333 366
Q ss_pred EEEEECC
Q psy4653 211 VKIWDYQ 217 (229)
Q Consensus 211 i~iwd~~ 217 (229)
+..|.+.
T Consensus 560 l~~f~l~ 566 (677)
T 1kb0_A 560 VYTFVVG 566 (677)
T ss_dssp EEEEEET
T ss_pred EEEEecc
Confidence 7777765
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.85 E-value=2.9e-06 Score=69.53 Aligned_cols=199 Identities=11% Similarity=0.125 Sum_probs=124.4
Q ss_pred cCCCeEEEEE-ecCeEEEEEcCCC----CeEEEEEe-------cCcCeEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q psy4653 25 PTEPWMLASL-YNGHVHVWNHETN----QNVKSFEV-------CDLPVRAAKFVPRKNWIVTGSDD------MQVCVFNY 86 (229)
Q Consensus 25 p~~~~l~~~~-~dg~v~~wd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~sg~~d------~~i~iwd~ 86 (229)
++++.|++.+ .++.|.+.|+.+. +..+..+. ....-..+...|+| ++++...+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 8888888865 6889999999754 44454420 11124566788999 76666655 78999999
Q ss_pred CCcceEEEeccCC---CceeEEEEcCCCCEEEEEe-------------------CCCcEEEEecCCceeeeeeeec-cee
Q psy4653 87 NTLERFHSFEAHS---DYVRCVAVHPTQPFLLTSS-------------------DDMLIKLWNWEKAWACQQVFEG-HTH 143 (229)
Q Consensus 87 ~~~~~~~~~~~h~---~~i~~v~~~~~~~~~~s~~-------------------~d~~v~lwd~~~~~~~~~~~~~-~~~ 143 (229)
++.+.+..+.... ..-..+.|+|+++.++++. ...+|.+||+........+-.+ ...
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999888876322 2223588899999888885 4689999999876433333222 112
Q ss_pred eEEEEEE--cCCCCCEEE-EEE-----CCCcEEEEeCCCCC--ceEEE--ecC----------------CCceEEEEEEe
Q psy4653 144 YVMQIVI--NPKDNNTFA-SAS-----LDRTVKVWQLGSAS--PNFTL--EGH----------------EKGVNCVDYYH 195 (229)
Q Consensus 144 ~v~~~~~--~~~~~~~l~-s~~-----~d~~i~~wd~~~~~--~~~~~--~~h----------------~~~v~~~~~~~ 195 (229)
....+.+ +| ++.++. ++- .+++|.+|....+. ....+ ... ......+.+
T Consensus 252 ~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l-- 328 (462)
T 2ece_A 252 MALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI-- 328 (462)
T ss_dssp EEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE--
T ss_pred ccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE--
Confidence 3344545 87 455544 444 67788877654321 11111 110 122455666
Q ss_pred CCCcCEEEE-eeCCCeEEEEECC---CCeEEEeecc
Q psy4653 196 GGDKPYLIS-GADDRLVKIWDYQ---NKTCVQTLES 227 (229)
Q Consensus 196 ~~~~~~l~s-~s~d~~i~iwd~~---~~~~~~~~~~ 227 (229)
++++++|.. .-..+.|.+||+. +.+.+..+..
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 445555554 4457899999985 3456666543
No 238
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.81 E-value=1.4e-05 Score=63.93 Aligned_cols=205 Identities=9% Similarity=0.015 Sum_probs=129.2
Q ss_pred ceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEEE
Q psy4653 17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFHS 94 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~ 94 (229)
....++|+|....|+.+ ...+.|..++..++...............+++.+.+. +.++-...+.|.+.+.+.......
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 46789999876666554 4678999999987664443332223456788887544 455556677899999875433222
Q ss_pred eccCCCceeEEEEcCCCCE-EEEEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653 95 FEAHSDYVRCVAVHPTQPF-LLTSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172 (229)
Q Consensus 95 ~~~h~~~i~~v~~~~~~~~-~~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 172 (229)
+......-..++++|.+.. +++-... +.|...+++... ...+....-.....++++|.++.++++-...+.|..+|+
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 3233345689999986554 4555455 788888876432 122222223345788998866777777777889999998
Q ss_pred CCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 173 GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
........+.........+++. ++.+..+-...+.|...|..+++.+.++
T Consensus 233 dG~~~~~~~~~~~~~P~giav~---~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 233 DGSHRKAVISQGLPHPFAITVF---EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TSCSCEEEECSSCSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCceEEEEeCCCCCceEEEEE---CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 7544333333333345666762 2346667777888888886666544444
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=1.9e-06 Score=74.96 Aligned_cols=189 Identities=9% Similarity=0.127 Sum_probs=122.1
Q ss_pred cCeEEEEEcCCCCeEEEEEecC-c------------------------------CeEEEEEcCCCCEEEEEeCCC-----
Q psy4653 36 NGHVHVWNHETNQNVKSFEVCD-L------------------------------PVRAAKFVPRKNWIVTGSDDM----- 79 (229)
Q Consensus 36 dg~v~~wd~~~~~~~~~~~~~~-~------------------------------~v~~~~~~~~~~~l~sg~~d~----- 79 (229)
+|.|..+|.++|+.+..+.... . ....+.+.|+.+.+..++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5899999999999998875321 0 112468888888888888776
Q ss_pred --------------eEEEEECCCcceEEEecc--CC-------CceeEEEEcCCCC---EEEEEeCCCcEEEEecCCcee
Q psy4653 80 --------------QVCVFNYNTLERFHSFEA--HS-------DYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKAWA 133 (229)
Q Consensus 80 --------------~i~iwd~~~~~~~~~~~~--h~-------~~i~~v~~~~~~~---~~~s~~~d~~v~lwd~~~~~~ 133 (229)
.|..+|.++++.+..++. |. .......+..+++ .++.++.+|.+.++|..+++.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 399999999998877654 22 1222223333554 688889999999999877654
Q ss_pred eeeeeecc-----------eeeE------------------------EEEEEcCCCCCEEEE------------------
Q psy4653 134 CQQVFEGH-----------THYV------------------------MQIVINPKDNNTFAS------------------ 160 (229)
Q Consensus 134 ~~~~~~~~-----------~~~v------------------------~~~~~~~~~~~~l~s------------------ 160 (229)
+...-... ..++ ..++++|..+..++.
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 31110000 0000 013455533322221
Q ss_pred -----------------EECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653 161 -----------------ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223 (229)
Q Consensus 161 -----------------~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 223 (229)
...++.|..||+.+++.++..+.+.. ......... +.+++.++.|+.++.||.++++.+.
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~--gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTA--GNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEET--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEeC--CCEEEEECCcccchhhhhhcChhhe
Confidence 11347899999999998888765432 221122222 3478889999999999999999987
Q ss_pred eecc
Q psy4653 224 TLES 227 (229)
Q Consensus 224 ~~~~ 227 (229)
.++.
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7654
No 240
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.79 E-value=8.6e-06 Score=66.09 Aligned_cols=207 Identities=9% Similarity=0.025 Sum_probs=129.8
Q ss_pred CceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEE
Q psy4653 16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFH 93 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~ 93 (229)
.....++|++.+..|+.+ ...+.|..++...+.....+.........+++.+.+. +.++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 356789999876655554 4678999999987664443332223456678887554 44555566788888876543322
Q ss_pred EeccCCCceeEEEEcCCCCEE-EEEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653 94 SFEAHSDYVRCVAVHPTQPFL-LTSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171 (229)
Q Consensus 94 ~~~~h~~~i~~v~~~~~~~~~-~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 171 (229)
.+......-..++++|.+..+ ++-... +.|...+++... ...+....-.....++++|.++.++++-+..+.|..+|
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 233333456899999876655 444444 688888876432 22222222334678899876667777777888999999
Q ss_pred CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+........+.........+++. .+.++.+....+.|..+|..+++.+.++.
T Consensus 275 ~dG~~~~~~~~~~~~~P~giav~---~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 275 LDGSHRKAVISQGLPHPFAITVF---EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCeeEEEEECCCCCceEEEEE---CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 87544333333333345666762 23466777788899999866665555443
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=2.4e-06 Score=65.21 Aligned_cols=191 Identities=9% Similarity=0.001 Sum_probs=123.6
Q ss_pred hhhhhcccCCCce--EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC-eEEEEEcCCCCEEEEEeCCCeEE
Q psy4653 6 DIKRKLTARSDRV--KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDMQVC 82 (229)
Q Consensus 6 ~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~~i~ 82 (229)
++.+.|. |..+- ..+.|+ ++....+++.+|.|+.+|+.+++.+... ..... .-.+.+.. +++.+....++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence 4555563 54433 788888 3555666678899999999999998887 43322 12344442 33444445678999
Q ss_pred EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-cee---eEEEEEEcCCCCCEE
Q psy4653 83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTH---YVMQIVINPKDNNTF 158 (229)
Q Consensus 83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~~~l 158 (229)
++|.++.+.+.++..... ...+.+++..|+.+..+++|.++|.++......+..+ +.. .+..+.+. ++.++
T Consensus 120 V~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~ly 194 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIY 194 (268)
T ss_dssp EEETTTTEEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEE
T ss_pred EEECCcCcEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEE
Confidence 999999999888764322 2333466777777777889999998776443333221 111 23455654 56666
Q ss_pred EEEECCCcEEEEeCCCCCceEEEecC-------------CCceEEEEEEeCCCcCEEEEee
Q psy4653 159 ASASLDRTVKVWQLGSASPNFTLEGH-------------EKGVNCVDYYHGGDKPYLISGA 206 (229)
Q Consensus 159 ~s~~~d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~l~s~s 206 (229)
+....+..|.+-|.++++.+..+.-. ....+.|+|.+. ...+++||-
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~-~~rlfVTGK 254 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG-SGRIFMTGK 254 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT-TCCEEEEET
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC-CCEEEEeCC
Confidence 65557889999999999877666421 124588998643 345666653
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=2.2e-05 Score=59.99 Aligned_cols=190 Identities=10% Similarity=0.005 Sum_probs=114.3
Q ss_pred CeEEEEEecCeEEEEEcCCCCeE-----EEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCcceEEEeccCCCc
Q psy4653 28 PWMLASLYNGHVHVWNHETNQNV-----KSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFNYNTLERFHSFEAHSDY 101 (229)
Q Consensus 28 ~~l~~~~~dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 101 (229)
++|+.+.. +.|+.+++...... ..+.........+.++++++.|. +-..++.|..++.+.......+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555543 58999998765431 12222223568899999766554 4455678999998765433333222346
Q ss_pred eeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC--CCcEEEEeCCCCCce
Q psy4653 102 VRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL--DRTVKVWQLGSASPN 178 (229)
Q Consensus 102 i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~ 178 (229)
...+++++++. ++++-...+.|.+++++... ..............++++|..+.++++... .+.|..+++.... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~ 158 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R 158 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence 78999999755 45565667899999986432 122222112345778888855555555543 4688888876433 2
Q ss_pred EEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 179 FTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 179 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
..+. ........+++.+. .+.+.++-...+.|..+|......
T Consensus 159 ~~~~~~~~~~P~gia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAF-SSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp EEEECTTCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTEEEE
T ss_pred EEEEECCCCCCcEEEEcCC-CCEEEEEECCCCEEEEEecCCCce
Confidence 2232 22234667787532 233556666778999999975443
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.76 E-value=5.3e-07 Score=70.82 Aligned_cols=191 Identities=13% Similarity=-0.009 Sum_probs=121.7
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
..+.++...+++. ++.++.++.|..+|.. ++....+......+.++...+++++.+ ++ +.+..+| .+++....+
T Consensus 137 ~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~ 210 (330)
T 3hxj_A 137 AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF 210 (330)
T ss_dssp CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence 3455566666665 6677788999999999 888777765555677777777777554 44 7789999 677776666
Q ss_pred ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175 (229)
Q Consensus 96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 175 (229)
......+.++...+++.+ ..++.++.+..+|.... .. ..+......+..+.+.+ + ..+..++.++.+..+|. ++
T Consensus 211 ~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g~-~~-~~~~~~~~~~~~~~~~~-~-g~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 211 YAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDGT-EK-WRFKTGKRIESSPVIGN-T-DTIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp CCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTSC-EE-EEEECSSCCCSCCEECT-T-SCEEEECTTCEEEEECT-TS
T ss_pred ccCCcceeceEECCCCeE-EEEcCCCeEEEECCCCC-Ee-EEeeCCCCccccceEcC-C-CeEEEecCCCCEEEECC-CC
Confidence 655667888888888754 45566788888875322 22 22222222222334432 3 45666788888999996 56
Q ss_pred CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 176 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
+.+.........+.++.. ..++ .|..|+.+|.+++...+..+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~--d~~g-~l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 285 TEKWNFETGSWIIATPVI--DENG-TIYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp CEEEEEECSSCCCSCCEE--CTTC-CEEEECTTSCEEEEEC-----
T ss_pred cEEEEEEcCCccccceEE--cCCC-EEEEEcCCCeEEEEecccccc
Confidence 666655544344454444 2233 467799999999988765543
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.75 E-value=7e-07 Score=72.00 Aligned_cols=112 Identities=13% Similarity=-0.108 Sum_probs=84.0
Q ss_pred ceEEEEEcc-CCCeEEEEE-ecC----eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCe
Q psy4653 17 RVKCCDLHP-TEPWMLASL-YNG----HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQ 80 (229)
Q Consensus 17 ~v~~~~~~p-~~~~l~~~~-~dg----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~ 80 (229)
++.|..+.| ....+++.. .++ +|.+.|..+++.+..+.....+ .+.++|+++.+.++. .++.
T Consensus 20 ~~~~~~~~~~~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~ 97 (368)
T 1mda_H 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred ccccccCCCCCCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCE
Confidence 344444444 334454443 344 8899999999999999887777 799999999888876 3678
Q ss_pred EEEEECCCcceEEEeccCC-------CceeEEEEcCCCCEEEEEeC--CCcEEE--EecCC
Q psy4653 81 VCVFNYNTLERFHSFEAHS-------DYVRCVAVHPTQPFLLTSSD--DMLIKL--WNWEK 130 (229)
Q Consensus 81 i~iwd~~~~~~~~~~~~h~-------~~i~~v~~~~~~~~~~s~~~--d~~v~l--wd~~~ 130 (229)
|.+||..+++.+..+..+. ..-..+.++|++++++++.. +..|.+ +|+..
T Consensus 98 VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 9999999999988875431 23458999999998887764 467888 99855
No 245
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.72 E-value=3.5e-06 Score=74.24 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=114.0
Q ss_pred cCCC-ceEEEEEc-cCCCeEEEEEe-cC----eEEEEEcCCC-CeEE-EEEecCcCeEEEEEcCCCCEEEEEeCC-----
Q psy4653 13 ARSD-RVKCCDLH-PTEPWMLASLY-NG----HVHVWNHETN-QNVK-SFEVCDLPVRAAKFVPRKNWIVTGSDD----- 78 (229)
Q Consensus 13 ~~~~-~v~~~~~~-p~~~~l~~~~~-dg----~v~~wd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~d----- 78 (229)
+|.- .+...+|| |||+.++.+.. +| .|+++|+.++ +.+. .+.. ....+.|+|+++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence 4443 68889999 99998887653 33 4999999998 6321 1211 13567899999877776654
Q ss_pred CeEEEEECCCcc--eEEEec-cCCCceeEEEEcCCCCEEEEEe---CCCcEEEEecCCce-ee--eeeeecceeeEEEEE
Q psy4653 79 MQVCVFNYNTLE--RFHSFE-AHSDYVRCVAVHPTQPFLLTSS---DDMLIKLWNWEKAW-AC--QQVFEGHTHYVMQIV 149 (229)
Q Consensus 79 ~~i~iwd~~~~~--~~~~~~-~h~~~i~~v~~~~~~~~~~s~~---~d~~v~lwd~~~~~-~~--~~~~~~~~~~v~~~~ 149 (229)
.+|..+++.++. ....+. ........+.|+|++++|+..+ ....|.++|+.... .. ..+..........+.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 257778887653 222332 2334567889999999876444 23468888887542 22 223333334445555
Q ss_pred EcCCCCCEEEEEECC----CcEEEEeCCCCCceEE-EecCCCc--eEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653 150 INPKDNNTFASASLD----RTVKVWQLGSASPNFT-LEGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIW 214 (229)
Q Consensus 150 ~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~~i~iw 214 (229)
|+. ++.+++....+ ..|..+|+.+...... +..+... +..+++ .+ ..++++...|+..+||
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~-~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RS-NYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CS-SEEEEEEEETTEEEEE
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--EC-CEEEEEEEeCCEEEEE
Confidence 443 33344444343 3566666654222223 3334333 344444 33 3467778888875554
No 246
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=4.1e-05 Score=58.36 Aligned_cols=202 Identities=6% Similarity=0.028 Sum_probs=130.5
Q ss_pred hhcccCCCceEEEEEccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 9 RKLTARSDRVKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 9 ~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
+.+.|-...+..++++|++..|++ ...++.|...|.. ++.++.+.... ...-.+.+.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 456677778999999998877776 5578899999998 88888775432 35677888888877677666778888887
Q ss_pred CCcce---EEEec------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc--eeeeeeee-------cceeeEEEE
Q psy4653 87 NTLER---FHSFE------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA--WACQQVFE-------GHTHYVMQI 148 (229)
Q Consensus 87 ~~~~~---~~~~~------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~--~~~~~~~~-------~~~~~v~~~ 148 (229)
..... +.... ........++|+|.+..|+++.......+|.+... .....+.. .+......+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 54332 22221 12445789999999987776665555555555311 00111111 012235688
Q ss_pred EEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC---------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH---------EKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215 (229)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd 215 (229)
.++|.++.+++.....+.+..+|.... .+..+.-. ......++|.+ ++++.+ .++-+-+..|.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~--~G~lyI-vsE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDA--SGNIYI-VSEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECT--TCCEEE-EETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECC--CCCEEE-EcCCceEEEEE
Confidence 899988888888788889999997643 44333211 12456788854 455444 46666555554
No 247
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.68 E-value=8e-05 Score=60.69 Aligned_cols=208 Identities=11% Similarity=0.009 Sum_probs=129.1
Q ss_pred CCceEEEEEccCCCeEEEE-EecCeEEEEEcCCCC----eEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q psy4653 15 SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQ----NVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~ 88 (229)
-..+.+++|++.+..|+-+ ...+.|+.+++.... ..............+++.+. +++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3467899999876655555 467899999987632 22222222345678888874 45555556677899988876
Q ss_pred cceEEEeccCCCceeEEEEcCCCCEEEEEe-C-CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSS-D-DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~-d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
......+......-..|+++|.+..|+.+. . .+.|...+++... ...+....-.....+++++.++.++++-...++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 544333333334568999999666554443 3 4788888886432 222222222456788998866667777777889
Q ss_pred EEEEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 167 VKVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
|...|+........+.. .-.....+++. ...++.+....+.|..+|..+++.+.++.
T Consensus 270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~---~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEETTSCCCEEEEECSSTTSSEEEEEEE---TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEEeCCCCccEEEEeCCCCCCCCEEEEEe---CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 99999875544333332 12334566652 23467777788889999977776555543
No 248
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.68 E-value=8.5e-06 Score=66.81 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=102.1
Q ss_pred EEEEccCCCeEEEEEec------CeEEEEEcCCCCeEEEEEecCcC---eEEEEEcCCCCEEEEEe--------------
Q psy4653 20 CCDLHPTEPWMLASLYN------GHVHVWNHETNQNVKSFEVCDLP---VRAAKFVPRKNWIVTGS-------------- 76 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~sg~-------------- 76 (229)
.+...|++ .+++...+ |.|.+.|..+.+.+..+.....+ -..+.|+|+++.+++..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~ 220 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE 220 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence 35667999 77766666 79999999999999888643222 34578899999988885
Q ss_pred -----CCCeEEEEECCCcceEEEeccCC--CceeEEEE--cCCCCEEEEEe------CCCcEEEEecCCce-eeeeee--
Q psy4653 77 -----DDMQVCVFNYNTLERFHSFEAHS--DYVRCVAV--HPTQPFLLTSS------DDMLIKLWNWEKAW-ACQQVF-- 138 (229)
Q Consensus 77 -----~d~~i~iwd~~~~~~~~~~~~h~--~~i~~v~~--~~~~~~~~s~~------~d~~v~lwd~~~~~-~~~~~~-- 138 (229)
.+.+|.+||+.+++.+..+.... ..-..+.| +|+++++..++ .+++|.+|..+.+. ...+++
T Consensus 221 ~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 221 HLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp THHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 26789999999887777765431 12334545 99999876665 56688776654321 111111
Q ss_pred ecc----------------eeeEEEEEEcCCCCCEEE-EEECCCcEEEEeCC
Q psy4653 139 EGH----------------THYVMQIVINPKDNNTFA-SASLDRTVKVWQLG 173 (229)
Q Consensus 139 ~~~----------------~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~ 173 (229)
... ......+.+++ +++.|. |.-..+.|.++|+.
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECS
T ss_pred CCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEec
Confidence 000 12356788898 455554 44467899999985
No 249
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.66 E-value=6.9e-05 Score=59.12 Aligned_cols=206 Identities=8% Similarity=0.044 Sum_probs=128.2
Q ss_pred ceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeE-EEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEE
Q psy4653 17 RVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFH 93 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~ 93 (229)
...+++|++.+..|+ +-...+.|..++..++... ......-.....+++.+. +++.++-...+.|.+++.+......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 466889998655554 4456789999998876432 222222234567888874 4455555667789999987543322
Q ss_pred EeccCCCceeEEEEcCCCCEEEEEe--CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653 94 SFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171 (229)
Q Consensus 94 ~~~~h~~~i~~v~~~~~~~~~~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 171 (229)
........-..+++.|.+..++.+. ..+.|...+++... ...+....-.....+++++.++.++++-+..+.|..+|
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 2223334567899998755554443 35788888876432 12222222234578899886667777777888999999
Q ss_pred CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+........+.+.......+++. ...++.+-...+.|..+|..+++.+..+.
T Consensus 195 ~dG~~~~~~~~~~~~~P~glav~---~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 195 LDGTNRQAVVKGSLPHPFALTLF---EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTSCSCEEEECSCCSCEEEEEEE---TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEecCCCCCceEEEEe---CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 87543332233233345566663 23466777788999999987776555543
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.62 E-value=6.1e-06 Score=69.86 Aligned_cols=199 Identities=12% Similarity=0.069 Sum_probs=130.9
Q ss_pred ccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEecC-cCeEEEEE-c-CCCCEEEEEe------------------CCCeE
Q psy4653 24 HPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVCD-LPVRAAKF-V-PRKNWIVTGS------------------DDMQV 81 (229)
Q Consensus 24 ~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~-~-~~~~~l~sg~------------------~d~~i 81 (229)
-|||+++++... ++.|.+-|+.+.++.+.+..-. .....+.+ . |+++++.+++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 458999999775 5689999999999877554322 34677887 4 8999988884 24578
Q ss_pred EEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q psy4653 82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM--------------------------------------LI 123 (229)
Q Consensus 82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~--------------------------------------~v 123 (229)
.+.|.++++.+.++.-.. .-.-++++|+++++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998887765422 235678999999988777553 24
Q ss_pred EEEecCC--ceeeeeeeecceeeEEEEEEcCCCCCEEE-EEECCCcEEEEeCCCCC------------ceEEEecCCCce
Q psy4653 124 KLWNWEK--AWACQQVFEGHTHYVMQIVINPKDNNTFA-SASLDRTVKVWQLGSAS------------PNFTLEGHEKGV 188 (229)
Q Consensus 124 ~lwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~------------~~~~~~~h~~~v 188 (229)
.+.|... +......... ......+.++| |+.+++ ++..+.+|.++|+.+.+ ...+++. ....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP 333 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGP 333 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCc
Confidence 4444443 1110111110 11234577888 566555 55588899999997542 1122221 1345
Q ss_pred EEEEEEeCCCcCEEEEeeCCCeEEEEECCC----------CeEEEeeccC
Q psy4653 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQN----------KTCVQTLESG 228 (229)
Q Consensus 189 ~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~----------~~~~~~~~~~ 228 (229)
..++|. +++....+...|++|..||+.+ .+.+.+++.|
T Consensus 334 ~h~aF~--~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 334 LHTAFD--GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp EEEEEC--TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred ceEEEC--CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 667874 4554455677899999999977 6677777654
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.62 E-value=2.1e-05 Score=67.09 Aligned_cols=196 Identities=12% Similarity=0.024 Sum_probs=122.3
Q ss_pred CeEEEEEe------cCeEEEEEcCCCCeEEEEEecCcC--------------------------------------eEEE
Q psy4653 28 PWMLASLY------NGHVHVWNHETNQNVKSFEVCDLP--------------------------------------VRAA 63 (229)
Q Consensus 28 ~~l~~~~~------dg~v~~wd~~~~~~~~~~~~~~~~--------------------------------------v~~~ 63 (229)
..+++++. ++.|..+|..+|+.+..+...... ...+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 35666654 799999999999998887643210 0235
Q ss_pred EEcCCCCEEEEEeCC----------------CeEEEEECCCcceEEEeccC--CC----ceeE---EEEcCCCC---EEE
Q psy4653 64 KFVPRKNWIVTGSDD----------------MQVCVFNYNTLERFHSFEAH--SD----YVRC---VAVHPTQP---FLL 115 (229)
Q Consensus 64 ~~~~~~~~l~sg~~d----------------~~i~iwd~~~~~~~~~~~~h--~~----~i~~---v~~~~~~~---~~~ 115 (229)
.+.++...+..++.+ +.|..+|.++++.+..++.. .. .+.. +....+++ .++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 667776777666542 36899999999988776532 10 1111 22224563 567
Q ss_pred EEeCCCcEEEEecCCceeeeeeeecc------------eeeE--------------------------EEEEEcCCCCCE
Q psy4653 116 TSSDDMLIKLWNWEKAWACQQVFEGH------------THYV--------------------------MQIVINPKDNNT 157 (229)
Q Consensus 116 s~~~d~~v~lwd~~~~~~~~~~~~~~------------~~~v--------------------------~~~~~~~~~~~~ 157 (229)
.++.+|.+.+.|..+++..-...... ..++ ..++++|.++ +
T Consensus 321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~ 399 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-T 399 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-E
T ss_pred EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-E
Confidence 78889999999987764432221111 0011 1234555433 4
Q ss_pred EEEEE-------------------------------------CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC
Q psy4653 158 FASAS-------------------------------------LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200 (229)
Q Consensus 158 l~s~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 200 (229)
+.... .++.+..||..+++.+++.+.... +........ +.
T Consensus 400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t~--gg 476 (571)
T 2ad6_A 400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTK--GG 476 (571)
T ss_dssp EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEET--TT
T ss_pred EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-ccceeEEEC--CC
Confidence 33322 357899999999998887764321 221111222 23
Q ss_pred EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 201 YLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 201 ~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
.++.++.|+.|+.||.++++.+-+++.
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 677799999999999999999887764
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.62 E-value=8.2e-05 Score=58.46 Aligned_cols=200 Identities=10% Similarity=0.074 Sum_probs=119.8
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec--------------------CcCeEEEEEcC-CCCEEEEE
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC--------------------DLPVRAAKFVP-RKNWIVTG 75 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~sg 75 (229)
.-.+++++|++..++++..++.|..||..+++.. .+... ......+.+.+ +++ |..+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 4567889999988889889999999998876543 22210 12467899997 555 4445
Q ss_pred eCCCeEEEEECCCcceEEEec----c-CCCceeEEEEcC-CCCEEEEEeC-----------------CCcEEEEecCCce
Q psy4653 76 SDDMQVCVFNYNTLERFHSFE----A-HSDYVRCVAVHP-TQPFLLTSSD-----------------DMLIKLWNWEKAW 132 (229)
Q Consensus 76 ~~d~~i~iwd~~~~~~~~~~~----~-h~~~i~~v~~~~-~~~~~~s~~~-----------------d~~v~lwd~~~~~ 132 (229)
...+.|..+|.++++. ..+. + .....+.+++.+ ++.+.++-.. ++.|..+|.....
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4455588888775432 2221 1 123467899999 8987776533 3678888875442
Q ss_pred eeeeeeecceeeEEEEEEcCCCCC-EEEEEECCCcEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeC--
Q psy4653 133 ACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGAD-- 207 (229)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-- 207 (229)
...... .......++++| ++. ++++-...+.|..+++.... ....+..... ...+++ ..++++.++...
T Consensus 177 -~~~~~~-~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~--d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 177 -TTLLLK-ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR--NADGHFWVSSSEEL 250 (322)
T ss_dssp -EEEEEE-EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE--CTTSCEEEEEEEET
T ss_pred -EEEecc-CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE--CCCCCEEEEecCcc
Confidence 111111 112245678887 555 55555677899999987432 1112211112 555665 345555555433
Q ss_pred --------CCeEEEEECCCCeEEEeec
Q psy4653 208 --------DRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 208 --------d~~i~iwd~~~~~~~~~~~ 226 (229)
.+.|..+|.. ++.+..+.
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~ 276 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNILEVIP 276 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred cccccCCCccEEEEECCC-CCEEEEEE
Confidence 4567777764 55555554
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=2.9e-05 Score=59.59 Aligned_cols=172 Identities=4% Similarity=-0.093 Sum_probs=109.8
Q ss_pred CeEEEEEecCc-CeEEEEEcCCCCEEEEEeC--CCeEEEEECCCcceEEEeccCC-CceeEEEEcCCCCEEEEEeCCCcE
Q psy4653 48 QNVKSFEVCDL-PVRAAKFVPRKNWIVTGSD--DMQVCVFNYNTLERFHSFEAHS-DYVRCVAVHPTQPFLLTSSDDMLI 123 (229)
Q Consensus 48 ~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~h~-~~i~~v~~~~~~~~~~s~~~d~~v 123 (229)
+.+..+..... ....+.|++++.+.++.+. ++.|.++|+++++.+..+.... ..-..+++.. +..+++.-.++.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEE
Confidence 34455543332 2578999988654444433 5789999999999887765322 2334566653 3445566678999
Q ss_pred EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC--C---CceEEEEEEeCCC
Q psy4653 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH--E---KGVNCVDYYHGGD 198 (229)
Q Consensus 124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~---~~v~~~~~~~~~~ 198 (229)
.++|..+......+-.+ ...-..+ .+....+++| ..++.+.+.|..+.+.+..+.-. . ..++.+.|. +
T Consensus 89 ~viD~~t~~v~~~i~~g-~~~g~gl--t~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~---d 161 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQ-MKDGWGL--ATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI---N 161 (266)
T ss_dssp EEEETTTTEEEEEEECC-SSSCCEE--EECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---T
T ss_pred EEEECCCCcEEEEEECC-CCCeEEE--EECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE---C
Confidence 99999876544443223 1111223 3333445555 46889999999888777766521 1 135667764 3
Q ss_pred cCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 199 KPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
+.+.++...++.|.+-|..+++.+.+++.
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 44455555688999999999999998864
No 254
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.60 E-value=0.0001 Score=57.97 Aligned_cols=206 Identities=11% Similarity=0.010 Sum_probs=125.1
Q ss_pred CceEEEEEccCCCeEEEE-EecCeEEEEEcCC----CCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc
Q psy4653 16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHET----NQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL 89 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~ 89 (229)
....+++|++++..|+.+ ...+.|..++..+ ......+...-.....+++.+.++ +.++-...+.|.+.+.+..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 356789999976655554 5678999999886 222222222223457788887554 4455566788999998754
Q ss_pred ceEEEeccCCCceeEEEEcCCCCEEEEEe-CC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167 (229)
Q Consensus 90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 167 (229)
.....+......-..++++|.+..++.+. .. +.|...+++... ........-.....+++++.++.++++-...+.|
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 33222222334568999998666554443 33 688888875432 1222222233467888988666677777778899
Q ss_pred EEEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 168 KVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 168 ~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
..+|+........... .......+++. .+.++.+-...+.|..+|..+++.+.++
T Consensus 189 ~~~d~dg~~~~~~~~~~~~~~~P~giav~---~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEecCCCceEEEeecCCccCCcEEEEEE---CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 9999975433222222 12234566663 2346677778889999998777655554
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.59 E-value=4.7e-05 Score=65.10 Aligned_cols=195 Identities=9% Similarity=0.034 Sum_probs=121.0
Q ss_pred eEEEEE------ecCeEEEEEcCCCCeEEEEEecCcC-----------------------------------------eE
Q psy4653 29 WMLASL------YNGHVHVWNHETNQNVKSFEVCDLP-----------------------------------------VR 61 (229)
Q Consensus 29 ~l~~~~------~dg~v~~wd~~~~~~~~~~~~~~~~-----------------------------------------v~ 61 (229)
.+++++ .++.|.-+|..+|+.+..+...... -.
T Consensus 170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~ 249 (582)
T 1flg_A 170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ 249 (582)
T ss_dssp EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence 455554 3789999999999998876432110 02
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCcceEEEecc--CCC----ceeE-E--EEc
Q psy4653 62 AAKFVPRKNWIVTGSD--------------------D----MQVCVFNYNTLERFHSFEA--HSD----YVRC-V--AVH 108 (229)
Q Consensus 62 ~~~~~~~~~~l~sg~~--------------------d----~~i~iwd~~~~~~~~~~~~--h~~----~i~~-v--~~~ 108 (229)
.+++.|+.+.+..+.. | +.|..+|.++++.+..++. |.. .+.. + ...
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 3456677777776653 2 5899999999998877653 211 1111 1 221
Q ss_pred -CCCC---EEEEEeCCCcEEEEecCCceeeeeeeecc------------eeeE---------------------------
Q psy4653 109 -PTQP---FLLTSSDDMLIKLWNWEKAWACQQVFEGH------------THYV--------------------------- 145 (229)
Q Consensus 109 -~~~~---~~~s~~~d~~v~lwd~~~~~~~~~~~~~~------------~~~v--------------------------- 145 (229)
.+++ .++.++.+|.+.++|.++++.+-..-... ..++
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 409 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL 409 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence 4563 67889999999999987764432211110 0000
Q ss_pred -----EEEEEcCCCCCEEEEEE--------------------------------CCCcEEEEeCCCCCceEEEecCCCce
Q psy4653 146 -----MQIVINPKDNNTFASAS--------------------------------LDRTVKVWQLGSASPNFTLEGHEKGV 188 (229)
Q Consensus 146 -----~~~~~~~~~~~~l~s~~--------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v 188 (229)
..++++|.++.+++... .++.|..||+.+++.+++.+......
T Consensus 410 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 489 (582)
T 1flg_A 410 GGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLW 489 (582)
T ss_dssp CSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCC
T ss_pred cccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCc
Confidence 02344554443333221 36789999999999888776432211
Q ss_pred E-EEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 189 N-CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 189 ~-~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
. .+.. . +.+++.|+.|+.++.||.++++.+-.++.
T Consensus 490 ~g~~~t--a--gglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 490 AGVLAT--A--GNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SCCEEE--T--TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccceEe--C--CCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 1 1221 2 34788899999999999999998877654
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.56 E-value=4.8e-05 Score=65.18 Aligned_cols=187 Identities=11% Similarity=0.034 Sum_probs=116.8
Q ss_pred cCeEEEEEcCCCCeEEEEEecCcC--------------------------------------eEEEEEcCCCCEEEEEeC
Q psy4653 36 NGHVHVWNHETNQNVKSFEVCDLP--------------------------------------VRAAKFVPRKNWIVTGSD 77 (229)
Q Consensus 36 dg~v~~wd~~~~~~~~~~~~~~~~--------------------------------------v~~~~~~~~~~~l~sg~~ 77 (229)
+|.|.-+|.++|+.+..+...... -....+.++.+.+..++.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 799999999999998887643211 013456677788877766
Q ss_pred C----------------CeEEEEECCCcceEEEeccCCC------ce---eEEEEc-CCC---CEEEEEeCCCcEEEEec
Q psy4653 78 D----------------MQVCVFNYNTLERFHSFEAHSD------YV---RCVAVH-PTQ---PFLLTSSDDMLIKLWNW 128 (229)
Q Consensus 78 d----------------~~i~iwd~~~~~~~~~~~~h~~------~i---~~v~~~-~~~---~~~~s~~~d~~v~lwd~ 128 (229)
+ +.|..+|.++++.+..++.... .. .-+... .++ +.++.++.+|.+.+.|.
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~ 340 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence 5 3799999999998877654211 11 112332 456 46777889999999998
Q ss_pred CCceeeeeeeec------------ceeeE--------------------------EEEEEcCCCCCEEEEE---------
Q psy4653 129 EKAWACQQVFEG------------HTHYV--------------------------MQIVINPKDNNTFASA--------- 161 (229)
Q Consensus 129 ~~~~~~~~~~~~------------~~~~v--------------------------~~~~~~~~~~~~l~s~--------- 161 (229)
++++.+-..... ...++ ..++++|.. .++...
T Consensus 341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~ 419 (599)
T 1w6s_A 341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR-ELFFMGINHICMDWE 419 (599)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-TEEEEEEECEEEEEE
T ss_pred CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC-CEEEEeccccceeee
Confidence 776443221100 00011 012334422 222211
Q ss_pred ------------------------E------CCCcEEEEeCCCCCceEEEecCCCceEE-EEEEeCCCcCEEEEeeCCCe
Q psy4653 162 ------------------------S------LDRTVKVWQLGSASPNFTLEGHEKGVNC-VDYYHGGDKPYLISGADDRL 210 (229)
Q Consensus 162 ------------------------~------~d~~i~~wd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~d~~ 210 (229)
+ .++.+..||+.+++.+++.+........ +.. .+.+++.++.|+.
T Consensus 420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t----agg~vf~gt~dg~ 495 (599)
T 1w6s_A 420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT----AGDLVFYGTLDGY 495 (599)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE----TTTEEEEECTTSE
T ss_pred cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe----cCCEEEEECCCCe
Confidence 1 3578999999999988877532111111 221 2346778999999
Q ss_pred EEEEECCCCeEEEeecc
Q psy4653 211 VKIWDYQNKTCVQTLES 227 (229)
Q Consensus 211 i~iwd~~~~~~~~~~~~ 227 (229)
++.||.++|+.+-+.+.
T Consensus 496 l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 496 LKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCCEEEEeeC
Confidence 99999999998876653
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.54 E-value=1.1e-05 Score=70.23 Aligned_cols=194 Identities=7% Similarity=0.103 Sum_probs=121.4
Q ss_pred CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC-----------eEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----------VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
+..+++++.++.|.-+|..+|+.+..+...... ...+.+ .+..++.++.|+.+..+|.++++.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456778888999999999999999887643210 011122 3567888889999999999999988776
Q ss_pred ccCC----Ccee-EEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeeee--cc---------------------
Q psy4653 96 EAHS----DYVR-CVAVHPTQPFLLTSSD------DMLIKLWNWEKAWACQQVFE--GH--------------------- 141 (229)
Q Consensus 96 ~~h~----~~i~-~v~~~~~~~~~~s~~~------d~~v~lwd~~~~~~~~~~~~--~~--------------------- 141 (229)
+... ..+. ...+. ++ .++.+.. ++.|..+|.+++...-.... +.
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 1111 11111 33 3444332 58899999877644322210 00
Q ss_pred -------eeeEEEEEEcCCCCCEEEEEECCC-------------------cEEEEeCCCCCceEEEec--CC-------C
Q psy4653 142 -------THYVMQIVINPKDNNTFASASLDR-------------------TVKVWQLGSASPNFTLEG--HE-------K 186 (229)
Q Consensus 142 -------~~~v~~~~~~~~~~~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~--h~-------~ 186 (229)
......+.+.|. ..++..+..++ .|..+|..+++.++..+. |. .
T Consensus 222 ~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp HHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 000113456663 45666666555 499999999999888764 22 1
Q ss_pred ceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 187 GVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 187 ~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
+....++...+. ...++.++.+|.+.++|.++|+.+...
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 222223222222 126888999999999999999988543
No 258
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.46 E-value=0.00025 Score=62.68 Aligned_cols=206 Identities=11% Similarity=0.017 Sum_probs=126.6
Q ss_pred CceEEEEEccCCCeEE-EEEecCeEEEEEcCCC----CeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc
Q psy4653 16 DRVKCCDLHPTEPWML-ASLYNGHVHVWNHETN----QNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL 89 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~ 89 (229)
..+.+++|++....|+ +-...+.|+.+++... .....+.........+++.+.++ +.++-...+.|.+.+++..
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 4577899998655554 4456788998988753 22222222223466788887765 4555556778999998755
Q ss_pred ceEEEeccCCCceeEEEEcCCCCEEE-EEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653 90 ERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV 167 (229)
Q Consensus 90 ~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 167 (229)
.....+......-..|+++|....|+ +-... +.|...++... ....+....-.....+++++..+.++++-....+|
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 43333333334578999999755554 44333 68888888644 22233332334567888887667777776777899
Q ss_pred EEEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 168 KVWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 168 ~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
...++........+... -.....+++. + ..+.++-...+.|...|..+++.+.++
T Consensus 583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~--~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--E-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEE--T-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEecCCCceEEEecCCCccCCCCEEEEe--C-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 99998755444434332 2234566652 2 246666677788888887777655554
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.45 E-value=0.00032 Score=56.80 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=121.6
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEe
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
.-.|.+..+ .++|+.+ ....|+..++.+........ .......+.|.+.++.| .+-...+.|..++++.......+
T Consensus 78 ~~~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SSCEEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred CCeECCccc-cceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 344555555 3444444 34678888888765544333 23457889999866554 45456678989998765433333
Q ss_pred ccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCC
Q psy4653 96 EAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLG 173 (229)
Q Consensus 96 ~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~ 173 (229)
.........+++.+.+ .++++-...+.|.+.+++... ...+..........++++|..+.++++-... +.|...++.
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3223345678998754 455666677889998886432 2222222234467888888666677776655 788888886
Q ss_pred CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 174 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
...........-...+.+++.+. ++.+.++-+..+.|..+|+...
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~-~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGG-GTEEEEEETTTTEEEEECTTSC
T ss_pred CCCcEEEEECCCCCeeeEEEeCC-CCEEEEEECCCCEEEEEeCCCC
Confidence 54433333333334677888543 3345566667788998888643
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.45 E-value=2.1e-05 Score=66.65 Aligned_cols=200 Identities=12% Similarity=0.087 Sum_probs=128.7
Q ss_pred ceEEEEE-c-cCCCeEEEEE------------------ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe
Q psy4653 17 RVKCCDL-H-PTEPWMLASL------------------YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS 76 (229)
Q Consensus 17 ~v~~~~~-~-p~~~~l~~~~------------------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 76 (229)
....+++ . |++.++++++ .++.|.+.|..+.+......... .-..+.++|+|+++++.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence 4667777 4 9999999884 45789999999998888877544 345677899999988887
Q ss_pred CCC--------------------------------------eEEEEECCC--cce-EEEeccCCCceeEEEEcCCCCEEE
Q psy4653 77 DDM--------------------------------------QVCVFNYNT--LER-FHSFEAHSDYVRCVAVHPTQPFLL 115 (229)
Q Consensus 77 ~d~--------------------------------------~i~iwd~~~--~~~-~~~~~~h~~~i~~v~~~~~~~~~~ 115 (229)
.+. .+.+.|..+ ++. +..+... ..-.++.++||+++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLC 292 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEE
Confidence 543 245555554 222 2333221 2345899999999776
Q ss_pred E-EeCCCcEEEEecCCcee-----------eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC---------
Q psy4653 116 T-SSDDMLIKLWNWEKAWA-----------CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS--------- 174 (229)
Q Consensus 116 s-~~~d~~v~lwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--------- 174 (229)
+ +..+.+|.++|+.+... .....+ -......++|+| ++..+++...|+.|..||+..
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 4 45678999999975421 111111 123357788998 566666778999999999866
Q ss_pred -CCceEEEecCCCceE-EEEE--EeCCCcCEEEEee---CCCe----------EEEEECCCCe
Q psy4653 175 -ASPNFTLEGHEKGVN-CVDY--YHGGDKPYLISGA---DDRL----------VKIWDYQNKT 220 (229)
Q Consensus 175 -~~~~~~~~~h~~~v~-~~~~--~~~~~~~~l~s~s---~d~~----------i~iwd~~~~~ 220 (229)
...+..+.-|..+-. +... ..++++++|+++. .|+- -.++|+..++
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 344555666654321 1100 1245677777754 3442 2889996554
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=0.00027 Score=55.17 Aligned_cols=198 Identities=9% Similarity=-0.014 Sum_probs=115.3
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC-C-eEEEEECCCcceEE
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD-M-QVCVFNYNTLERFH 93 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-~-~i~iwd~~~~~~~~ 93 (229)
.....++|+|++..+++...++.|..||..+. ....+. .......+.+.++++++++.... + .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999986666667899999998763 333333 23457889999999976665432 2 46667777665432
Q ss_pred Eec-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeee--------eeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 94 SFE-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQ--------VFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 94 ~~~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~~--------~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
... ........++..+.+..+++-..++.|..+|..... .... ...+.......+ ++..+.++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 221 112234556655555455555568888888875431 1110 000111122333 5533346667777
Q ss_pred CCcEEEEeCCC-CCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 164 DRTVKVWQLGS-ASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 164 d~~i~~wd~~~-~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
.++|..+++.. +.. ...+.. ......+++. .++++.++....+.|.++|.. ++.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd--~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFD--VEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEB--TTCCEEEECBTTCCEEEECTT-CCE
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEEC--CCCCEEEEeCCCCeEEEECCC-CCE
Confidence 88999999864 221 111111 1123345553 355666666677889999976 544
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=0.0002 Score=56.18 Aligned_cols=195 Identities=14% Similarity=-0.010 Sum_probs=115.4
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--c---CcCeEEEEEcC-CCCEEEEEeC-------------
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--C---DLPVRAAKFVP-RKNWIVTGSD------------- 77 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~---~~~v~~~~~~~-~~~~l~sg~~------------- 77 (229)
....+++.|+...|+++...+.|..+|..+++. ..+.. . ......+.+.+ +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 578899998333455555456688898876543 22211 1 12467899999 8887666432
Q ss_pred ----CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEc
Q psy4653 78 ----DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVIN 151 (229)
Q Consensus 78 ----d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~ 151 (229)
++.|..+|.++++... +......-+.++++|++..+. +-...+.|.++++..... ....+....+ ...+.+.
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred ccCCCceEEEEeCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 3668888877654322 211123346799999998655 446678999999864210 1111111112 5667888
Q ss_pred CCCCCEEEEEEC----------CCcEEEEeCCCCCceEEEecCC----CceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653 152 PKDNNTFASASL----------DRTVKVWQLGSASPNFTLEGHE----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217 (229)
Q Consensus 152 ~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~ 217 (229)
+ ++.+.++... .+.|..+|.. ++.+..+.... ..+..+.+ . ++.+.++...++.|..+++.
T Consensus 238 ~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~--~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 238 A-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-H--DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp T-TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-E--TTEEEEECSSCSEEEEEEC-
T ss_pred C-CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-e--CCEEEEeecCCCceEEEecc
Confidence 7 5677766544 4567888764 55555554321 23445554 2 34566676778899999986
Q ss_pred CC
Q psy4653 218 NK 219 (229)
Q Consensus 218 ~~ 219 (229)
..
T Consensus 313 ~~ 314 (322)
T 2fp8_A 313 KK 314 (322)
T ss_dssp --
T ss_pred cc
Confidence 43
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.45 E-value=0.00033 Score=55.95 Aligned_cols=200 Identities=13% Similarity=0.074 Sum_probs=123.5
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCcceEE
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFNYNTLERFH 93 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~~~ 93 (229)
.+...|.+..+ .++|+.+. ...|+..++.......... .......++|.+.++.|. +-...+.|..++++......
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 45566777776 34444443 4568888887655433333 234578999998666554 44566788889887654333
Q ss_pred EeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEe
Q psy4653 94 SFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQ 171 (229)
Q Consensus 94 ~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd 171 (229)
...........+++.+.+ .++++-...+.|.+.+++... ...+..........++++|.++.++++-... +.|...+
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 332223445789998754 455666677899999986542 2222322333457888888667777776666 7888888
Q ss_pred CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
+........+...-...+.+++.+. ++.+..+-+..+.|..+|+...
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~-~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCcEEEEECCCCCcceEEEeCC-CCEEEEEECCCCEEEEEeCCCC
Confidence 8654332222222334677887533 3445566666788999988643
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.43 E-value=0.00014 Score=55.45 Aligned_cols=169 Identities=6% Similarity=-0.011 Sum_probs=109.8
Q ss_pred CeEEEEEecCcC-eEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-ceeEEEEcCCCCEEEEEeCCCcEEE
Q psy4653 48 QNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKL 125 (229)
Q Consensus 48 ~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~v~~~~~~~~~~s~~~d~~v~l 125 (229)
+.+..|.....+ ...+.|+ .+.+..+.+.+|.|+.+|+++++.+..+ -... +-..+++..+ .+++..-.++.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEE
Confidence 344555433322 4788887 4567777788889999999999987766 3322 2244666543 45555667899999
Q ss_pred EecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec--CC---CceEEEEEEeCCCcC
Q psy4653 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG--HE---KGVNCVDYYHGGDKP 200 (229)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--h~---~~v~~~~~~~~~~~~ 200 (229)
+|.++.......-.+.. -..+.. ++..|+.+..+++|.++|..+.+.+..+.- +. ..++.+.|. ++.
T Consensus 121 ~D~~Tl~~~~ti~~~~e--GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~---dG~ 192 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGE--GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA---NGV 192 (268)
T ss_dssp EETTTTEEEEEEECSSC--CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---TTE
T ss_pred EECCcCcEEEEEeCCCc--eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe---CCE
Confidence 99987754433322211 123333 344555445688999999988887776643 22 134667764 344
Q ss_pred EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 201 YLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 201 ~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
+.+....+..|.+-|.++++.+.+++.
T Consensus 193 lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred EEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 555555788999999999999998874
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.39 E-value=0.00021 Score=54.44 Aligned_cols=169 Identities=9% Similarity=0.042 Sum_probs=107.3
Q ss_pred eEEEEEecCcC-eEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEeccCCCc-eeEEEEcCCCCEEEEEeCCCcEE
Q psy4653 49 NVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSFEAHSDY-VRCVAVHPTQPFLLTSSDDMLIK 124 (229)
Q Consensus 49 ~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~-i~~v~~~~~~~~~~s~~~d~~v~ 124 (229)
.+..|.....+ ...+.|+ ++.+..+.+.+| .|+.+|+++++.+..+...... -..+++..+ +.++..-.++.+.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~-~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD-KIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT-EEEEEESSSSEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC-EEEEEEeeCCEEE
Confidence 34555433222 4778888 666666666666 8999999999988877543322 234555432 3444555688999
Q ss_pred EEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC----C-CceEEEEEEeCCCc
Q psy4653 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH----E-KGVNCVDYYHGGDK 199 (229)
Q Consensus 125 lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h----~-~~v~~~~~~~~~~~ 199 (229)
++|.++.......-.+..+ ..+. +....+++|. .+.+|.++|..+.+.+..+.-. . ..++.+.|. ++
T Consensus 111 v~D~~t~~~~~ti~~~~eG--~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~---~G 182 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEG--WGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV---DG 182 (262)
T ss_dssp EEETTTCCEEEEEECSSCC--CCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE---TT
T ss_pred EEECccCcEEEEEECCCCc--eEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE---CC
Confidence 9999876544333222111 2333 3233455554 4778999999888777766432 1 235567764 34
Q ss_pred CEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 200 PYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 200 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
.+.+....+..|.+.|.++++.+.+++.
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 4555555788999999999999998875
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.36 E-value=0.00013 Score=62.33 Aligned_cols=183 Identities=8% Similarity=-0.029 Sum_probs=112.4
Q ss_pred EEEEccCCCeEEEEEe--------------------c----CeEEEEEcCCCCeEEEEEecC----------cCeEEEEE
Q psy4653 20 CCDLHPTEPWMLASLY--------------------N----GHVHVWNHETNQNVKSFEVCD----------LPVRAAKF 65 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~~--------------------d----g~v~~wd~~~~~~~~~~~~~~----------~~v~~~~~ 65 (229)
..++.|+...++.+.. | +.|..+|..+|+.+..++... .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677888887877663 2 689999999999998886421 1221 222
Q ss_pred c-CCCC---EEEEEeCCCeEEEEECCCcceEEEeccCC-------------Cce--------------------------
Q psy4653 66 V-PRKN---WIVTGSDDMQVCVFNYNTLERFHSFEAHS-------------DYV-------------------------- 102 (229)
Q Consensus 66 ~-~~~~---~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i-------------------------- 102 (229)
. .+|+ .++.++.+|.+.++|.++++.+..+.... ..+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4564 78889999999999999998876543321 000
Q ss_pred ------eEEEEcCCCCEEEEEe---------------------------------CCCcEEEEecCCceeeeeeeeccee
Q psy4653 103 ------RCVAVHPTQPFLLTSS---------------------------------DDMLIKLWNWEKAWACQQVFEGHTH 143 (229)
Q Consensus 103 ------~~v~~~~~~~~~~s~~---------------------------------~d~~v~lwd~~~~~~~~~~~~~~~~ 143 (229)
..++++|+..++++.. .++.|..||+.+++..-+...+.
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-- 486 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-- 486 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--
Confidence 1346666655544432 25778888887764432222111
Q ss_pred eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCce-EEEEEEeCCCcCEEEEeeC
Q psy4653 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV-NCVDYYHGGDKPYLISGAD 207 (229)
Q Consensus 144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~ 207 (229)
++....+.. .+.+++.|+.|+.++.+|.++++.+++++...... .-+.|... ...|+++.+.
T Consensus 487 ~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~-G~qYv~~~~G 549 (582)
T 1flg_A 487 PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD-GEQYLGVTVG 549 (582)
T ss_dssp CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET-TEEEEEEEEC
T ss_pred CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC-CEEEEEEEcc
Confidence 111101111 24577779999999999999999999887643221 12455333 3346665443
No 267
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.36 E-value=0.00053 Score=54.45 Aligned_cols=203 Identities=9% Similarity=0.144 Sum_probs=123.2
Q ss_pred EEEEEccC---CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC----CC---EEEEEeC---CCeEEEEE
Q psy4653 19 KCCDLHPT---EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR----KN---WIVTGSD---DMQVCVFN 85 (229)
Q Consensus 19 ~~~~~~p~---~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~sg~~---d~~i~iwd 85 (229)
.++..||. ...++++...+-+.++|+ +|+.+..+.. ..++.+..-|. ++ ++++... +++|.+|+
T Consensus 29 pavw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 29 PAIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp EEEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred ccEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 35666665 345666778899999999 8888888753 34555555552 22 2333333 46899997
Q ss_pred CC-CcceEEEecc------CC-CceeEEEE--cCC-CC-EEEEEeCCCcEEEEecCCc------eeeeeeeecceeeEEE
Q psy4653 86 YN-TLERFHSFEA------HS-DYVRCVAV--HPT-QP-FLLTSSDDMLIKLWNWEKA------WACQQVFEGHTHYVMQ 147 (229)
Q Consensus 86 ~~-~~~~~~~~~~------h~-~~i~~v~~--~~~-~~-~~~s~~~d~~v~lwd~~~~------~~~~~~~~~~~~~v~~ 147 (229)
+. ....+..+.. .. ..+..+++ +|. +. ++++...++.+..|++... ....+.|... +.+..
T Consensus 106 iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~Eg 184 (355)
T 3amr_A 106 IDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEG 184 (355)
T ss_dssp ECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEE
T ss_pred ECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcce
Confidence 63 2223444421 11 44566777 774 44 6788888999999998421 1222334322 34556
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEeCCCC-----CceEEEe-cC-CCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECC-
Q psy4653 148 IVINPKDNNTFASASLDRTVKVWQLGSA-----SPNFTLE-GH-EKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQ- 217 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~-~h-~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~- 217 (229)
+...+. ...|..+-.|.-|..++.... +.+..+. ++ ...+..+++++..++. +|++.+ .+.+..+||.+
T Consensus 185 cvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 185 MAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEETT-TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEEcCC-CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 666764 457777888866666665422 2222221 22 2367888887554444 566555 67899999997
Q ss_pred CCeEEEeec
Q psy4653 218 NKTCVQTLE 226 (229)
Q Consensus 218 ~~~~~~~~~ 226 (229)
+.+.+..+.
T Consensus 264 ~~~~vg~f~ 272 (355)
T 3amr_A 264 KNKYVADFR 272 (355)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEE
Confidence 677777663
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.35 E-value=9.3e-05 Score=64.15 Aligned_cols=111 Identities=9% Similarity=0.088 Sum_probs=72.9
Q ss_pred EEEEcc-CCCeEEEEEecC-----------eEEEEEcCCCCeEEE--EEe-cCcCeEEEEEcCCCCEEEEEeC-CCeEEE
Q psy4653 20 CCDLHP-TEPWMLASLYNG-----------HVHVWNHETNQNVKS--FEV-CDLPVRAAKFVPRKNWIVTGSD-DMQVCV 83 (229)
Q Consensus 20 ~~~~~p-~~~~l~~~~~dg-----------~v~~wd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~sg~~-d~~i~i 83 (229)
++++.| ++..++.|+.++ .+.+||..+++.... ... ......++.+..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556777 888888887543 688999998764332 211 2223445778889999999984 457999
Q ss_pred EECCCcceEEEeccCCCce-eEEEEcCCCCEEEEEe-CC-----CcEEEEecCC
Q psy4653 84 FNYNTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSS-DD-----MLIKLWNWEK 130 (229)
Q Consensus 84 wd~~~~~~~~~~~~h~~~i-~~v~~~~~~~~~~s~~-~d-----~~v~lwd~~~ 130 (229)
||..+.+....-.-+..+- .++++.+++++++.|+ .+ ..+.+||...
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 9988765432212122222 3456667889888887 34 5688999754
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.32 E-value=0.00027 Score=60.57 Aligned_cols=161 Identities=9% Similarity=-0.010 Sum_probs=102.5
Q ss_pred EEEEccCCCeEEEEEec----------------CeEEEEEcCCCCeEEEEEecCc----------CeEEEEEc-CCC---
Q psy4653 20 CCDLHPTEPWMLASLYN----------------GHVHVWNHETNQNVKSFEVCDL----------PVRAAKFV-PRK--- 69 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~~d----------------g~v~~wd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~--- 69 (229)
..++.|+...++.+..+ +.|..+|..+|+.+..++.... ++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 45677788888887655 4899999999999988875321 121 2222 456
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCC-------------Cce--------------------------eEEEEcCC
Q psy4653 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHS-------------DYV--------------------------RCVAVHPT 110 (229)
Q Consensus 70 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i--------------------------~~v~~~~~ 110 (229)
+.++.++.+|.+.++|.++++.+...+... ..+ ..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 467888999999999999998876543110 011 14566666
Q ss_pred CCEEEEEe---------------------------------------CCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653 111 QPFLLTSS---------------------------------------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN 151 (229)
Q Consensus 111 ~~~~~s~~---------------------------------------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (229)
..++++.. .++.|..||+.+++..-+...+. +...-.+.
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~ 481 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMA 481 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEE
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceE
Confidence 55554432 34677778876654332221111 11100011
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCCceEEEecC
Q psy4653 152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184 (229)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 184 (229)
. .+.+++.++.|+.++.+|.++++.+++.+-.
T Consensus 482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp E-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 1 3457777999999999999999999888653
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.28 E-value=0.0003 Score=59.99 Aligned_cols=161 Identities=9% Similarity=-0.023 Sum_probs=103.2
Q ss_pred EEEEccCCCeEEEEEec----------------CeEEEEEcCCCCeEEEEEecC----------cCeEEEEEcCCCC---
Q psy4653 20 CCDLHPTEPWMLASLYN----------------GHVHVWNHETNQNVKSFEVCD----------LPVRAAKFVPRKN--- 70 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~~d----------------g~v~~wd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~--- 70 (229)
.+++.|+...++.+..+ +.|..+|..+|+.+..++... .++. +...++|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 45677877777776532 369999999999998886431 1221 22224563
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCC-------------Cce--------------------------eEEEEcCCC
Q psy4653 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHS-------------DYV--------------------------RCVAVHPTQ 111 (229)
Q Consensus 71 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i--------------------------~~v~~~~~~ 111 (229)
.++.++.+|.+.++|.++++.+..++... ..+ ..++|+|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67788999999999999998876543211 011 235778877
Q ss_pred CEEEEEe-------------------------------------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653 112 PFLLTSS-------------------------------------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154 (229)
Q Consensus 112 ~~~~s~~-------------------------------------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (229)
.+++... .++.|..||+.+++..-+...+. .+....+.. .
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t-~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYT-K 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEE-T
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEE-C
Confidence 7665543 34788888887664432221111 111111111 2
Q ss_pred CCEEEEEECCCcEEEEeCCCCCceEEEecC
Q psy4653 155 NNTFASASLDRTVKVWQLGSASPNFTLEGH 184 (229)
Q Consensus 155 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 184 (229)
+.+++.++.|+.++.+|.++++.+++++..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 456677899999999999999999888643
No 271
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.26 E-value=1.5e-05 Score=69.59 Aligned_cols=207 Identities=12% Similarity=0.014 Sum_probs=122.9
Q ss_pred ceEEEEEccCCCeEEEE-EecCeEEEEEcCC----CCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCcc
Q psy4653 17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHET----NQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNTLE 90 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~ 90 (229)
.+..++|++.+..|+.+ ...+.|+.+++.+ ......+.........+++.+.+ ++.++-...+.|.+++++...
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 45678999877666665 4568899999875 22212211111234557777544 445554556789999887544
Q ss_pred eEEEeccCCCceeEEEEcCCCCE-EEEEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653 91 RFHSFEAHSDYVRCVAVHPTQPF-LLTSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168 (229)
Q Consensus 91 ~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 168 (229)
....+......-..++++|.+.. +++-... +.|.+.++..... ..+....-.....++++|..+.++++-+..++|.
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 33322222234568899986554 4443333 6888888754321 1111111223467889886677888877888999
Q ss_pred EEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 169 VWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 169 ~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
.+++........+.. .......+++. ++ .++++....+.|..+|..+++.+.++..
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd--~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVF--ED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEE--TT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEE--CC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 999865333222221 11123344542 23 4677777889999999988888877653
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.0007 Score=51.02 Aligned_cols=170 Identities=7% Similarity=-0.005 Sum_probs=108.5
Q ss_pred CeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEeccCCCc-eeEEEEcCCCCEEEEEeCCCcE
Q psy4653 48 QNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSFEAHSDY-VRCVAVHPTQPFLLTSSDDMLI 123 (229)
Q Consensus 48 ~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~-i~~v~~~~~~~~~~s~~~d~~v 123 (229)
+.+..|+... .....+.|++ +.+..+.+.+| .|+.+|+++++.+......... -..+++.. ++.+...-.++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEE
Confidence 3455554322 2367888886 55556656654 8999999999988876544332 23455543 3444556678999
Q ss_pred EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC-----CceEEEEEEeCCC
Q psy4653 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE-----KGVNCVDYYHGGD 198 (229)
Q Consensus 124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~ 198 (229)
.++|..+.......-.+..+ ..+.. ....+++|- .+++|.++|..+.+.+..++-.. ..++.+.+. +
T Consensus 88 ~v~D~~tl~~~~ti~~~~~G--wglt~--dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~---~ 159 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEG--WALTS--DDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV---N 159 (243)
T ss_dssp EEEETTTTEEEEEEECSSCC--CEEEE--CSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---T
T ss_pred EEEECCcCcEEEEEeCCCCc--eEEee--CCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe---C
Confidence 99999876544433222222 33433 234566665 47889999998887777665321 235566663 3
Q ss_pred cCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 199 KPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
+.+.+....+..|.+-|.++++.+.+++.
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 44455555688999999999999998874
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00097 Score=54.79 Aligned_cols=155 Identities=7% Similarity=0.075 Sum_probs=97.0
Q ss_pred ceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CC----eEEEEECCCc-
Q psy4653 17 RVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DM----QVCVFNYNTL- 89 (229)
Q Consensus 17 ~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~----~i~iwd~~~~- 89 (229)
.-..++++| ++..|+++...+.|+.+|..+++...... ....-..++|+++++.|..+.. ++ .+..++.+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 46667666655899999998866544433 3345788999999995555543 22 2333343221
Q ss_pred ceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC-EEEEEECCCcE
Q psy4653 90 ERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTV 167 (229)
Q Consensus 90 ~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i 167 (229)
.....+.. ......++++| ++.++++-..++.|..++............+.......++++| ++. ++++-...+.|
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEE
Confidence 11122221 23346788999 6777777777889999998754321111111122356789998 566 66676788899
Q ss_pred EEEeCCC
Q psy4653 168 KVWQLGS 174 (229)
Q Consensus 168 ~~wd~~~ 174 (229)
..++...
T Consensus 295 ~~~~~d~ 301 (430)
T 3tc9_A 295 LRSDYDW 301 (430)
T ss_dssp EEEEEET
T ss_pred EEEeCCc
Confidence 9988653
No 274
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.14 E-value=0.0018 Score=55.72 Aligned_cols=206 Identities=9% Similarity=0.037 Sum_probs=120.8
Q ss_pred CceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCe-EEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceE
Q psy4653 16 DRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQN-VKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERF 92 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~ 92 (229)
....+++|++.+..++.+. ..+.|..+++..... ...+...-.....+++.+.++ +..+-...+.|.+.+.+.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 3577999999777666654 568899999876532 222222224678899998655 4555556788999998754332
Q ss_pred EEeccCCCceeEEEEcCCCCEE-EEE-eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653 93 HSFEAHSDYVRCVAVHPTQPFL-LTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170 (229)
Q Consensus 93 ~~~~~h~~~i~~v~~~~~~~~~-~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 170 (229)
..+...-..-..|++.|.+..| ++- +..+.|...+++.. ....+....-.....+++++.++.++++-...+.|...
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 2222233345689999875544 443 22456777776543 22222222233467888888666777777778899999
Q ss_pred eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
|+........+.+.......+++. ++ .+..|-...+.|...|..+++.+..+
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~--~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLF--ED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp SSSCCEEC---------CCCEEES--SS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred cCCCCccEEEEeCCCCCceEEEEe--CC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 986543322222111122345552 23 45666667888999998877655444
No 275
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.13 E-value=0.0039 Score=55.15 Aligned_cols=195 Identities=9% Similarity=0.075 Sum_probs=122.0
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE--------ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE--------VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
...|.++...+++. |..|+.++-|..||..+++...... .....|.++...++++.|-.|+.++-|..+|.
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 45699999988876 6667778789999998865533211 11346889988888885667777777999998
Q ss_pred CCcceEEEec----cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee------cceeeEEEEEEcCCCCC
Q psy4653 87 NTLERFHSFE----AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE------GHTHYVMQIVINPKDNN 156 (229)
Q Consensus 87 ~~~~~~~~~~----~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~ 156 (229)
++++...... .+...|.++...+++.+.+.. . +-+.+||..... ...... -....|..+...+ ++.
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~-~g~ 510 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTLFRDS-HKR 510 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE-EEECCBCTTCCBCCCCCEEEEEECT-TCC
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe-EEEccccccccccCCceEEEEEECC-CCC
Confidence 8765432211 134578999998888765554 3 458889876542 221111 1234577887765 454
Q ss_pred EEEEEECCCcEEEEeCCCCCceEEEe-------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 157 TFASASLDRTVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 157 ~l~s~~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
+.+ |.. +-+..||..+... .+. .....+.++.. ..++.+ ..|+.. -+..||.++++..
T Consensus 511 lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~--d~~g~l-WigT~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 511 LWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE--ASNGII-WVGTRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE--CTTSCE-EEEESS-CEEEEETTTTEEE
T ss_pred EEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE--CCCCCE-EEEeCC-CceeECCCCCcEE
Confidence 444 444 4588888765543 222 11234666654 344544 444444 5888898777553
No 276
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.07 E-value=0.0043 Score=53.47 Aligned_cols=204 Identities=7% Similarity=-0.051 Sum_probs=128.4
Q ss_pred CceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEE
Q psy4653 16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFH 93 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~ 93 (229)
....+++|++.+..++.+ ..++.|..+++........+.........+++.+.++ +..+-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 357799999977666655 4678999999887654444332223466788887655 44555556788998886543322
Q ss_pred EeccCCCceeEEEEcCCCCEE-EEE-eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653 94 SFEAHSDYVRCVAVHPTQPFL-LTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171 (229)
Q Consensus 94 ~~~~h~~~i~~v~~~~~~~~~-~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 171 (229)
.+...-..-..|+++|....| ++- +..+.|...+++... ...+.. .-.....+++++..+.++++-...+.|...|
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d 194 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence 222233445799999855544 443 235678888776432 222222 2344678888886666777777888999999
Q ss_pred CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
+..... ..+...-.....+++. + ..+..|-...+.|...|..+++....+
T Consensus 195 ~dG~~~-~v~~~~l~~P~glav~--~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 195 MLGLNR-EVIADDLPHPFGLTQY--Q-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTSCSC-EEEEECCSCEEEEEEE--T-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCce-EEeeccCCCceEEEEE--C-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 876544 3333333345566763 2 345666667889999997777644444
No 277
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.99 E-value=0.0072 Score=53.42 Aligned_cols=193 Identities=8% Similarity=-0.008 Sum_probs=118.9
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE----ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE----VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE 90 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~ 90 (229)
...|.++...+++..|..|+.++-|..+|..+++...... .....|.++...+++++.+.. .+| +..||.++++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCe
Confidence 3579999998888757778888889999999876533211 123468899888888765544 444 8889987764
Q ss_pred eEEEec------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee------ecceeeEEEEEEcCCCCCEE
Q psy4653 91 RFHSFE------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF------EGHTHYVMQIVINPKDNNTF 158 (229)
Q Consensus 91 ~~~~~~------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l 158 (229)
...... .....|.++...+++.+.+... +-+.+||...... ... ......|.++...+ ++.+.
T Consensus 483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~-~g~lW 557 (795)
T 4a2l_A 483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEAS-NGIIW 557 (795)
T ss_dssp EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECT-TSCEE
T ss_pred EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECC-CCCEE
Confidence 432211 1235789999998887665543 5688888755422 111 01234577887765 45544
Q ss_pred EEEECCCcEEEEeCCCCCceEEEec---C-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 159 ASASLDRTVKVWQLGSASPNFTLEG---H-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 159 ~s~~~d~~i~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
+ |+.+ -+..||..+.+. ..+.. - ...+.++.. ..++.+.+ ++. +-|..||.++++.
T Consensus 558 i-gT~~-Gl~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~--d~~g~lWi-~t~-~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 558 V-GTRE-GFYCFNEKDKQI-KRYNTTNGLPNNVVYGILE--DSFGRLWL-STN-RGISCFNPETEKF 617 (795)
T ss_dssp E-EESS-CEEEEETTTTEE-EEECGGGTCSCSCEEEEEE--CTTSCEEE-EET-TEEEEEETTTTEE
T ss_pred E-EeCC-CceeECCCCCcE-EEeCCCCCCchhheEEEEE--CCCCCEEE-EcC-CceEEEcCCCCcE
Confidence 4 4444 588888765532 22221 1 234665554 34454444 444 5578888877654
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.98 E-value=0.0078 Score=53.28 Aligned_cols=182 Identities=9% Similarity=-0.046 Sum_probs=109.7
Q ss_pred ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc----ceEEEeccCCCceeEEEEcC
Q psy4653 35 YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL----ERFHSFEAHSDYVRCVAVHP 109 (229)
Q Consensus 35 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~~~i~~v~~~~ 109 (229)
....|+..++...+...... ....+..++|.+.++ +.++-...+.|..++++.. .....+.........|++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 34567778887655433333 334678899998655 4455555678888888642 22222332334567899997
Q ss_pred CCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCceEEEecCCCc
Q psy4653 110 TQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPNFTLEGHEKG 187 (229)
Q Consensus 110 ~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~h~~~ 187 (229)
.+. ++++-...+.|.+.++.... ...+..........++++|..+.++++-... +.|...++........+...-..
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred cCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence 765 55666777899999987542 2233333334467889988666677765443 78888888654433333333345
Q ss_pred eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 188 v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
.+.|++.+. .+.+.++-...+.|...++...
T Consensus 560 P~GLavD~~-~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 560 PNGITLDLL-SGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEEecC-CCeEEEEeCCCCcEEEEecCCC
Confidence 667777533 3344455556677888887644
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.96 E-value=0.0037 Score=48.98 Aligned_cols=185 Identities=10% Similarity=0.004 Sum_probs=111.6
Q ss_pred eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC----cceEEEeccCCCcee
Q psy4653 29 WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT----LERFHSFEAHSDYVR 103 (229)
Q Consensus 29 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~----~~~~~~~~~h~~~i~ 103 (229)
+|+.+. ...|+..|+.+.+....... ......+.|.+.++.| .+-...+.|..++++. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 35688899988765544432 3457889999876554 4555567899998875 222222222223457
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCceEEE
Q psy4653 104 CVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPNFTL 181 (229)
Q Consensus 104 ~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~ 181 (229)
.+++.+.+ .++++-...+.|.+.+++.. ....+..........++++|..+.++++.... +.|...++.... ...+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence 89998654 45566677889999998653 22222322223457788888666666665443 688888875433 2333
Q ss_pred -ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 182 -EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 182 -~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
...-...+.+++.+. ++.+..+-+..+.|..+|+..
T Consensus 159 ~~~~~~~P~gla~d~~-~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 VTENIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred EECCCCCceEEEEecc-CCEEEEEECCCCeEEEEecCC
Confidence 222334667887533 334556666778899999864
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.96 E-value=0.0022 Score=56.46 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=88.0
Q ss_pred EEEEEccCCCeEEEEEec-----CeEEEEEcCCCCe--EEEEEec-CcCeEEEEEcCCCCEEEEEeCC---CeEEEEECC
Q psy4653 19 KCCDLHPTEPWMLASLYN-----GHVHVWNHETNQN--VKSFEVC-DLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYN 87 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~~d-----g~v~~wd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~ 87 (229)
..+.|+||++.|+....| ..|.++++.+++. ...+... ......+.|+|+|++|+..+.+ ..|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 467899999988888765 3688899888653 2333322 2346778999999987765533 368888887
Q ss_pred Ccc-eE--EEe-ccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeee-eeecce-eeEEEEEEcCCCCCE
Q psy4653 88 TLE-RF--HSF-EAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQ-VFEGHT-HYVMQIVINPKDNNT 157 (229)
Q Consensus 88 ~~~-~~--~~~-~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~ 157 (229)
++. .. ..+ ....+....+.|+..+.+++.+..+ ..|..+|+........ ++.... ..+..+.+. .+.+
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~l 381 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYL 381 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEE
Confidence 652 22 333 2333445566665555555555544 3566777653211122 222211 134445553 4456
Q ss_pred EEEEECCCcEEEE
Q psy4653 158 FASASLDRTVKVW 170 (229)
Q Consensus 158 l~s~~~d~~i~~w 170 (229)
+++...++..++|
T Consensus 382 v~~~~~~g~~~l~ 394 (751)
T 2xe4_A 382 VVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEeCCEEEEE
Confidence 6777778865544
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.94 E-value=0.0045 Score=50.88 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=113.6
Q ss_pred ceEEEEEccC--CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---Ce-EEEEECCCcc
Q psy4653 17 RVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQ-VCVFNYNTLE 90 (229)
Q Consensus 17 ~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~-i~iwd~~~~~ 90 (229)
.-..++++|+ ...|+.+...+.|+.+|..+++...... .......+.++++++++++.... .. +...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3568899995 4455555444899999998876654433 33457899999999955554321 22 3333322111
Q ss_pred e-EEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeee-cceeeEEEEEEcCCCCC-EEEEEECCCc
Q psy4653 91 R-FHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFE-GHTHYVMQIVINPKDNN-TFASASLDRT 166 (229)
Q Consensus 91 ~-~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~l~s~~~d~~ 166 (229)
. ...+. .-..-..++++| ++.++++-..++.|+.+|...+......+. +.......++++| ++. ++++-...+.
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~ 296 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHC 296 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCE
Confidence 1 01111 123345788999 677766766778899999864422122221 1112234688998 455 6667677889
Q ss_pred EEEEeCCC--CCc--eEEEecC---------------CCceEEEEEEe-------CCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 167 VKVWQLGS--ASP--NFTLEGH---------------EKGVNCVDYYH-------GGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 167 i~~wd~~~--~~~--~~~~~~h---------------~~~v~~~~~~~-------~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
|+.+++.. +.. ...+.+. -.....+++.. ..++.+.++-...+.|+.++. .+
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99988653 211 1122211 11234466521 234456666666778888874 44
No 282
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.85 E-value=0.0058 Score=47.47 Aligned_cols=174 Identities=9% Similarity=0.058 Sum_probs=99.7
Q ss_pred CceEEEEEccCCCeEEEEEec--CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-e
Q psy4653 16 DRVKCCDLHPTEPWMLASLYN--GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-R 91 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~d--g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~ 91 (229)
.....+++.|++.++++.... ..|..+|..+++......... .....+...+.++.+++-..++.|..+|...++ .
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 457889999999866655433 257778888877644332211 123444555555555555568888888876542 1
Q ss_pred EEEec---------cCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEEE
Q psy4653 92 FHSFE---------AHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTFA 159 (229)
Q Consensus 92 ~~~~~---------~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (229)
+.... ..-..-+.+ ++++..+ ++-...+.|..+++...... ...+.. ......+++.+ ++.+++
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~v 227 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYG 227 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEE
Confidence 21100 111223455 7777755 45566789999998641111 112211 11234567776 677887
Q ss_pred EEECCCcEEEEeCCCCCceE--EEecCCCceEEEEEE
Q psy4653 160 SASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDYY 194 (229)
Q Consensus 160 s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~ 194 (229)
+....+.|.++|.. ++... .+........+++|.
T Consensus 228 a~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 228 ATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp ECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred EeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 77778899999875 43321 222222457788874
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.84 E-value=0.0081 Score=48.79 Aligned_cols=188 Identities=10% Similarity=-0.023 Sum_probs=115.6
Q ss_pred CeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCc----ceEEEeccCCCce
Q psy4653 28 PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFNYNTL----ERFHSFEAHSDYV 102 (229)
Q Consensus 28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~----~~~~~~~~h~~~i 102 (229)
++|+.+ ....|+..++.+........ ....+..++|.+.++.|. +-...+.|..++++.. .....+.......
T Consensus 84 ~~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 344433 45789999998765544433 334688999998666554 4445678888888652 2222223233456
Q ss_pred eEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-CCcEEEEeCCCCCceEE
Q psy4653 103 RCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL-DRTVKVWQLGSASPNFT 180 (229)
Q Consensus 103 ~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~ 180 (229)
..+++.+ .+.++++-...+.|.+.+++... ...++.........++++|..+.++++-.. .+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 7899997 45556666778899999987542 233333223346788888866666666533 47888888865443333
Q ss_pred EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 181 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
+...-...+.+++.+. ++.+..+-+..+.|..+|+...
T Consensus 241 ~~~~l~~P~glavd~~-~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 241 VTENIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp ECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCceEEEEEEeC-CCEEEEEECCCCEEEEEeCCCC
Confidence 3333345677887543 3345555566788999988654
No 284
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.83 E-value=0.0067 Score=47.75 Aligned_cols=195 Identities=12% Similarity=0.100 Sum_probs=118.9
Q ss_pred EEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEE-EEe----c--CcCeEEEEE---cCCCCEEEEEe-----------
Q psy4653 19 KCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKS-FEV----C--DLPVRAAKF---VPRKNWIVTGS----------- 76 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~sg~----------- 76 (229)
.+.+|++....+..+. ..++|..||...+..... +.. . ......+.+ .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4689998666666665 799999999986544333 211 1 113588999 58877777644
Q ss_pred --CCCeEEEEECC---CcceEEEec--cCC-----------CceeEEEEcCCCCEEEEEeCC-CcEEEEecCCceeeeee
Q psy4653 77 --DDMQVCVFNYN---TLERFHSFE--AHS-----------DYVRCVAVHPTQPFLLTSSDD-MLIKLWNWEKAWACQQV 137 (229)
Q Consensus 77 --~d~~i~iwd~~---~~~~~~~~~--~h~-----------~~i~~v~~~~~~~~~~s~~~d-~~v~lwd~~~~~~~~~~ 137 (229)
.+..+..+|+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.. . ...
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~-~~~ 173 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T-VST 173 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C-EEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E-Eee
Confidence 25678899998 777654432 111 247889999999999988877 77777776533 1 111
Q ss_pred ee------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCce-EEEe--cC---CCceEEE-EEEeCCCcCE-EE
Q psy4653 138 FE------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN-FTLE--GH---EKGVNCV-DYYHGGDKPY-LI 203 (229)
Q Consensus 138 ~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~--~h---~~~v~~~-~~~~~~~~~~-l~ 203 (229)
+. ......+.++++| ++.+|+....++.+..+|+...... ..+. +. -.....+ .... +++. |+
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~--~G~vllV 250 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV--GNESVLV 250 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE--TTEEEEE
T ss_pred eeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc--CCEEEEE
Confidence 11 1111245788888 5666666655999999998743220 1111 22 1223332 2211 3344 66
Q ss_pred EeeCCCeEEEEECCC
Q psy4653 204 SGADDRLVKIWDYQN 218 (229)
Q Consensus 204 s~s~d~~i~iwd~~~ 218 (229)
+....+.+.+.+-..
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 666677777766543
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.80 E-value=0.013 Score=50.43 Aligned_cols=202 Identities=11% Similarity=0.088 Sum_probs=125.9
Q ss_pred CceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEe------cCcCeEEEEEcCCCCE-EEEEeCCCeEEEEECC
Q psy4653 16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEV------CDLPVRAAKFVPRKNW-IVTGSDDMQVCVFNYN 87 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~ 87 (229)
..+.+++|++....|+-+ ...+.|+.++.........+.. .......+++.+.++. ..+-+..+.|.+.+.+
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 457899999976666655 4578899998876543333322 1235788999987664 4566667789998886
Q ss_pred CcceEEEe-ccCCCceeEEEEcC-CCCEEEEEeCCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653 88 TLERFHSF-EAHSDYVRCVAVHP-TQPFLLTSSDDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 88 ~~~~~~~~-~~h~~~i~~v~~~~-~~~~~~s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
. +....+ ......-+.|+++| .+.++++-.... .|...+++.. ....+....-.....+++++..+.++++-+.
T Consensus 420 G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~-~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~ 497 (628)
T 4a0p_A 420 G-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT-EREVLFFSGLSKPIALALDSRLGKLFWADSD 497 (628)
T ss_dssp S-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred C-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC-CcEEEEeccCCCccEEEEeCCCCEEEEEeCC
Confidence 4 333333 23345678999999 555555543333 5666666533 2222222223345788888765667777677
Q ss_pred CCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653 164 DRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 223 (229)
.+.|...++.... ...+. ........++.. . +.+..+-...+.|...|..+++...
T Consensus 498 ~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~-~--~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 498 LRRIESSDLSGAN-RIVLEDSNILQPVGLTVF-E--NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp TTEEEEEETTSCS-CEEEECSSCSCEEEEEEE-T--TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred CCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEE-C--CEEEEEECCCCeEEEEECcCCCCcE
Confidence 7899999986543 33343 333345666663 2 3466666677888888887665433
No 286
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.01 Score=52.32 Aligned_cols=195 Identities=9% Similarity=0.045 Sum_probs=116.0
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE---EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF---EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 91 (229)
...|.++...+++. |..|+.++-|..+|..+++..... ......|.++...+++++.+ |+.++-+..+|.++++.
T Consensus 362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence 35799999888776 566776777888998764332211 11234588888887776554 66666788888876543
Q ss_pred EEEec---cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-----eeeEEEEEEcCCCCCEEEEEEC
Q psy4653 92 FHSFE---AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-----THYVMQIVINPKDNNTFASASL 163 (229)
Q Consensus 92 ~~~~~---~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~ 163 (229)
..+. .....|.++...+++.+.+ |+. +-|.++|..... ........ ...|..+...+ ++.+ ..|..
T Consensus 440 -~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~-~g~l-Wigt~ 513 (781)
T 3v9f_A 440 -QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQDS-EGRF-WIGTF 513 (781)
T ss_dssp -EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEECT-TCCE-EEEES
T ss_pred -EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEcC-CCCE-EEEEc
Confidence 2332 1346789998888776544 444 568888876532 11111111 34577887765 4444 44565
Q ss_pred CCcEEEEeCCCCCceEEEec-C---CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 164 DRTVKVWQLGSASPNFTLEG-H---EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 164 d~~i~~wd~~~~~~~~~~~~-h---~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
++-+..+|..+.+. ..+.. . ...|.++.. ..++. |..|+.+|-|..||.++++.
T Consensus 514 ~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~--d~~g~-lWi~T~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 514 GGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYR--SSKGQ-MWLATGEGLVCFPSARNFDY 571 (781)
T ss_dssp SSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEE--CTTSC-EEEEETTEEEEESCTTTCCC
T ss_pred CCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEE--CCCCC-EEEEECCCceEEECCCCCcE
Confidence 44577888765432 22221 1 234666654 33444 44455566558888876653
No 287
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.75 E-value=0.017 Score=49.77 Aligned_cols=199 Identities=9% Similarity=-0.013 Sum_probs=117.5
Q ss_pred ceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCcceEEE
Q psy4653 17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNTLERFHS 94 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~ 94 (229)
.+.+++|++.+..|+.+ ...+.|..++.............-.....+++.+.+ ++..+-+..+.|.+.+++.......
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l 429 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKIL 429 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEE
Confidence 56789999966555554 467899999988654433333222356678888744 4555555677899988875432222
Q ss_pred eccCCCceeEEEEcCC-CCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653 95 FEAHSDYVRCVAVHPT-QPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172 (229)
Q Consensus 95 ~~~h~~~i~~v~~~~~-~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 172 (229)
+...-..-..|+++|. +.++++-. ....|...+++... ...+....-.....+++++.++.++++-+..++|...++
T Consensus 430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~-~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD-RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc-cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 2222345679999996 54555542 23677777765432 122222223446778888766667777677788999998
Q ss_pred CCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 173 GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
........+...-.....++.. ++ .+..|-...+.|..-|..++
T Consensus 509 dG~~~~~~~~~~l~~P~glav~--~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 509 DGTGRRVLVEDKIPHIFGFTLL--GD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp SSCCCEEEEECCCCSSCCEEEE--TT-EEEEECTTSSCEEEEESSSC
T ss_pred CCCceEEEeccCCCCcEEEEEE--CC-EEEEeecCCCeEEEEEcCCC
Confidence 6544322222222222344442 22 34555556666777776665
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.70 E-value=0.011 Score=46.42 Aligned_cols=175 Identities=8% Similarity=-0.034 Sum_probs=103.4
Q ss_pred ceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCcceEE
Q psy4653 17 RVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD--DMQVCVFNYNTLERFH 93 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~ 93 (229)
....+++.+.+..|+ +-...+.|.+.++...............-..+.+.|.+..|..... .+.|...+.+......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 345678887554444 4456788999998764433222222335678899987666555543 4677777776433222
Q ss_pred EeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653 94 SFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172 (229)
Q Consensus 94 ~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 172 (229)
.....-..-+.|++++++..| ++-+..+.|..+|++.. ....+..+.......+++. .+.++.+....+.|..++.
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEEC
Confidence 222222334789999866655 55566788999998643 2222222222334556664 3467777777889999998
Q ss_pred CCCCceEEEecCCCceEEEEEE
Q psy4653 173 GSASPNFTLEGHEKGVNCVDYY 194 (229)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~~~~~ 194 (229)
.+++....+.........++.+
T Consensus 237 ~~G~~~~~i~~~~~~P~~i~v~ 258 (318)
T 3sov_A 237 YTGEGLREIHSDIFSPMDIHAF 258 (318)
T ss_dssp TTCCSCEEEECCCSSCCCEEEE
T ss_pred CCCCceEEEeCCCCCCcEEEEe
Confidence 7776665554332233344443
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.0045 Score=50.83 Aligned_cols=154 Identities=8% Similarity=0.034 Sum_probs=91.3
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeC-CC----cEEEEecCCcee
Q psy4653 60 VRAAKFVP-RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-DM----LIKLWNWEKAWA 133 (229)
Q Consensus 60 v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~----~v~lwd~~~~~~ 133 (229)
-..++++| ++..|......+.|..+|++.++.. .+......-..++|++++..++.+.. ++ .+.+.+......
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 46788898 3555555554478888998875543 33234455789999999995555543 22 233344322211
Q ss_pred eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcC-EEEEeeCCCeE
Q psy4653 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKP-YLISGADDRLV 211 (229)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~-~l~s~s~d~~i 211 (229)
....+.. ......++++|.++.++++-..++.|..++............ .......+++. ++++ ++++-...+.|
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~--pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH--PSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC--TTSSEEEEEETTTTEE
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc--CCCCEEEEEECCCCEE
Confidence 1112211 122456778886677787777888999999876543111111 12235667874 4555 55566678889
Q ss_pred EEEECC
Q psy4653 212 KIWDYQ 217 (229)
Q Consensus 212 ~iwd~~ 217 (229)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998865
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.61 E-value=0.02 Score=46.94 Aligned_cols=155 Identities=9% Similarity=0.023 Sum_probs=89.2
Q ss_pred CCceEEEEEccCCCeEEEEEec----C-eEEEEEcCCCCe-EEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYN----G-HVHVWNHETNQN-VKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~d----g-~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~ 87 (229)
......++++|++. |+.+... . .+...+...+.. ...+.. -..-..+.+.| ++++.++-..++.|..+|.+
T Consensus 181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 34578999999999 5554432 1 233343332221 112222 22346678888 66666666667789999987
Q ss_pred CcceEEEe-cc-CCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCce-ee--eeeeecc---------------eeeEE
Q psy4653 88 TLERFHSF-EA-HSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAW-AC--QQVFEGH---------------THYVM 146 (229)
Q Consensus 88 ~~~~~~~~-~~-h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~-~~--~~~~~~~---------------~~~v~ 146 (229)
++.....+ .. ....-..++|+|++.. +++-...+.|+.++..... .. ...+.+. -....
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~ 338 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN 338 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence 66542222 11 1122346999999984 5555667899998864211 10 1112111 11245
Q ss_pred EEEE---------cCCCCCEEEEEECCCcEEEEeC
Q psy4653 147 QIVI---------NPKDNNTFASASLDRTVKVWQL 172 (229)
Q Consensus 147 ~~~~---------~~~~~~~l~s~~~d~~i~~wd~ 172 (229)
.+++ .+ ++.++++-...++|+.++.
T Consensus 339 giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 339 QGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT
T ss_pred cEEEEccccccccCC-CCcEEEEECCCCEEEEECC
Confidence 5777 43 5667777777889999885
No 291
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.035 Score=48.94 Aligned_cols=198 Identities=12% Similarity=0.006 Sum_probs=119.3
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE---------ecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE---------VCDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
....|.++...+++. |..|+.++-|..++..++....... .....|.++...+++++. .|+.++-|..+
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~ 388 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVF 388 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEE
Confidence 345799999998886 6777778888889988755422211 012458899888877654 45555558888
Q ss_pred ECCCcceEEEe---ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEE
Q psy4653 85 NYNTLERFHSF---EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFA 159 (229)
Q Consensus 85 d~~~~~~~~~~---~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~ 159 (229)
|..++...... ......|.++...+++.+.+ |+.++-+..+|..... ...... .....|.++...+ ++ .+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~-~g-~lw 464 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDK-NK-KIW 464 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECT-TS-EEE
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECC-CC-CEE
Confidence 87654322111 12345788998888776554 6666678888875442 222111 1234577777765 34 455
Q ss_pred EEECCCcEEEEeCCCCCceEEEecC-----CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653 160 SASLDRTVKVWQLGSASPNFTLEGH-----EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221 (229)
Q Consensus 160 s~~~d~~i~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 221 (229)
.|.. +-+..+|..+++........ ...+.++.. ..++. |..|+.++-+..||.++++.
T Consensus 465 igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 465 IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ--DSEGR-FWIGTFGGGVGIYTPDMQLV 527 (781)
T ss_dssp EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE--CTTCC-EEEEESSSCEEEECTTCCEE
T ss_pred EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE--cCCCC-EEEEEcCCCEEEEeCCCCeE
Confidence 5565 56888998765433222211 235666655 33444 55566544477788876654
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.026 Score=47.13 Aligned_cols=155 Identities=10% Similarity=0.142 Sum_probs=95.9
Q ss_pred ceEEEEEccC-CCeEEEEEe-cCeEEEEEcCCCCeEEEEEecC---cCeEEEEE-------cCCCCEEEEEeCCC-----
Q psy4653 17 RVKCCDLHPT-EPWMLASLY-NGHVHVWNHETNQNVKSFEVCD---LPVRAAKF-------VPRKNWIVTGSDDM----- 79 (229)
Q Consensus 17 ~v~~~~~~p~-~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~l~sg~~d~----- 79 (229)
.-..|+|+|. ...|+++.. .+.|++.|..++.......... .....+.| +++++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578999994 666666654 4679999999877755544322 24788999 99999666665543
Q ss_pred --eEEEEECCC-cceE-----EEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecC-------Ccee----------
Q psy4653 80 --QVCVFNYNT-LERF-----HSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWE-------KAWA---------- 133 (229)
Q Consensus 80 --~i~iwd~~~-~~~~-----~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~-------~~~~---------- 133 (229)
.|.+++... ++.. ..+... .....++++|+ +.++++-..++.|..+|++ ....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255665333 1111 112111 23357888995 5556677778889999986 2321
Q ss_pred -eeeeee-cceeeEEEEEEcCCCCC-EEEEEECCCcEEEEeCC
Q psy4653 134 -CQQVFE-GHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLG 173 (229)
Q Consensus 134 -~~~~~~-~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~~wd~~ 173 (229)
...++. +.......++++| ++. ++++-...+.|+.++..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecC
Confidence 112221 1123357899998 566 56666778899997654
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.51 E-value=0.022 Score=44.78 Aligned_cols=190 Identities=5% Similarity=0.016 Sum_probs=103.5
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCcceE
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY--NTLERF 92 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~--~~~~~~ 92 (229)
..+..+.+.+++..++++ .+|.|.. ....++.=... ......+..+.+.+++.+++.+...+..+-+|- .+-+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence 357778887777655544 4554422 12223322221 222346888999999888877755444444443 222232
Q ss_pred EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVINPKDNNTFASASLDRTVKV 169 (229)
Q Consensus 93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 169 (229)
. ......+..+.+.+++..+ .++.+|.+++.+.+.+..-...... ....+..+.+.+ ++.+++. +.++.+ +
T Consensus 200 ~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-g~~g~i-~ 273 (327)
T 2xbg_A 200 N--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLA-GGAGAL-L 273 (327)
T ss_dssp E--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEE-ESTTCE-E
T ss_pred C--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEE-eCCCeE-E
Confidence 1 2344678899999988765 4456788877643222111111111 123467788876 4555554 457766 3
Q ss_pred EeCCCCCceEEEe---cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653 170 WQLGSASPNFTLE---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216 (229)
Q Consensus 170 wd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~ 216 (229)
+....++.-..+. .....+.++.|.. +. .++.++.+|.|.-++-
T Consensus 274 ~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 274 CSQDGGQTWQQDVDVKKVPSNFYKILFFS--PD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EESSTTSSCEECGGGTTSSSCCCEEEEEE--TT-EEEEECSTTEEEEECC
T ss_pred EeCCCCcccEEcCccCCCCCCeEEEEEEC--CC-ceEEEcCCceEEEEcC
Confidence 4444443322232 1234577788753 22 4667778898776654
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.30 E-value=0.00077 Score=58.91 Aligned_cols=180 Identities=10% Similarity=-0.036 Sum_probs=102.3
Q ss_pred cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC----cceEEEeccCCCceeEEEEcCC
Q psy4653 36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNYNT----LERFHSFEAHSDYVRCVAVHPT 110 (229)
Q Consensus 36 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~----~~~~~~~~~h~~~i~~v~~~~~ 110 (229)
.+.|+..++.+.+........ .....+.|.+.++.|.... ..+.|..++++. ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 357788888776554433322 3467889998776665554 456788888875 2221222111223457888854
Q ss_pred -CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCceEEEecCCCce
Q psy4653 111 -QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPNFTLEGHEKGV 188 (229)
Q Consensus 111 -~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~h~~~v 188 (229)
+.++++-...+.|.+.++.... ...++.........++++|..+.++++.... +.|...++........+...-...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 4455565667899999986542 2222222222345677887666666665433 678887775433221111212234
Q ss_pred EEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 189 ~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
+.+++.+. .+.+.++-+..+.|..+|+..
T Consensus 543 nGlavd~~-~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 543 NGITLDLL-SGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCEEECTT-TCCEEEEETTTTEEEEECSSS
T ss_pred cEEEEecc-CCEEEEEecCCCeEEEEccCC
Confidence 56777432 344666666778899999864
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.28 E-value=0.038 Score=43.35 Aligned_cols=153 Identities=8% Similarity=0.058 Sum_probs=84.0
Q ss_pred CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653 14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF 92 (229)
Q Consensus 14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~ 92 (229)
+...+..+.+.|++.+++++...+-.+-+|-. ++.-..+ ......+..+.+.++++.++. +.+|.+...+.+.++.-
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCee
Confidence 44568899999988766655433333334421 2211111 123346788889988876654 46787776643323332
Q ss_pred EEecc----CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 93 HSFEA----HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 93 ~~~~~----h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
..+.. +...+.++.+.+++..++++. ++.+ ++..+.+..-.... ......+..+.+.+ +..++.++.+|.
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~~~~~~G~~G~ 314 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS--PDQGFILGQKGI 314 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE--TTEEEEECSTTE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC--CCceEEEcCCce
Confidence 22221 223588999998777666654 6666 34433332111111 11223456666653 345666778888
Q ss_pred EEEEeC
Q psy4653 167 VKVWQL 172 (229)
Q Consensus 167 i~~wd~ 172 (229)
|.-++-
T Consensus 315 i~~~~~ 320 (327)
T 2xbg_A 315 LLRYVT 320 (327)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 777654
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.069 Score=44.56 Aligned_cols=206 Identities=11% Similarity=0.174 Sum_probs=116.2
Q ss_pred CceEEEEE-------ccCCCeEEEEEecC-------eEEEEEcCC-CCeE-----EEEEecCcCeEEEEEcCC-CCEEEE
Q psy4653 16 DRVKCCDL-------HPTEPWMLASLYNG-------HVHVWNHET-NQNV-----KSFEVCDLPVRAAKFVPR-KNWIVT 74 (229)
Q Consensus 16 ~~v~~~~~-------~p~~~~l~~~~~dg-------~v~~wd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~s 74 (229)
.+...++| ++++..|+++...+ .|.+.+... +... ..+.... ....+.++|+ +.++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEE
Confidence 35788999 99999777776543 366676443 2221 2333323 3457788994 556666
Q ss_pred EeCCCeEEEEECC-------Ccce-----------EEE-ecc-CCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCce-
Q psy4653 75 GSDDMQVCVFNYN-------TLER-----------FHS-FEA-HSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAW- 132 (229)
Q Consensus 75 g~~d~~i~iwd~~-------~~~~-----------~~~-~~~-h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~- 132 (229)
-..++.|..+|++ ++.. ... +.. ....-..++|+|++.. +++-+..+.|+.++.....
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 6778889999987 4432 111 111 1233468999999995 5555667889987653321
Q ss_pred ee--eeeeecc---e------------eeEE-EEEEc-C-----CCCCEEEEEECCCcEEEEeCCCCCceEEEecC----
Q psy4653 133 AC--QQVFEGH---T------------HYVM-QIVIN-P-----KDNNTFASASLDRTVKVWQLGSASPNFTLEGH---- 184 (229)
Q Consensus 133 ~~--~~~~~~~---~------------~~v~-~~~~~-~-----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h---- 184 (229)
.. ..++.+. . .... .+... + .++.++++-...++|+.++. .+ .+.++-+.
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~ 422 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGAST 422 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTH
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccc
Confidence 11 1222221 0 1122 34443 1 24667777778889999984 33 23333221
Q ss_pred ----------C----------CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653 185 ----------E----------KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225 (229)
Q Consensus 185 ----------~----------~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 225 (229)
. .....+++.+. ++.+.++=+.+..||.++++...++...
T Consensus 423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~-~g~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDV-KEMFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp HHHHSCSCCCCCEETTTTCCCSSEEEEEEETT-TTEEEEEETTTTEEEEEEECCCC-----
T ss_pred cccCccccccCCCCchhhhhcCCCcEEEEECC-CCEEEEEeCCCCEEEEEECCCCcccccC
Confidence 0 12345666421 2446666667788888888776665443
No 297
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.15 E-value=0.049 Score=41.85 Aligned_cols=184 Identities=9% Similarity=0.059 Sum_probs=90.6
Q ss_pred CCCeEEEEEec-----CeEEEEEcCCCC---eEEEEEecC--cCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCcc
Q psy4653 26 TEPWMLASLYN-----GHVHVWNHETNQ---NVKSFEVCD--LPVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNTLE 90 (229)
Q Consensus 26 ~~~~l~~~~~d-----g~v~~wd~~~~~---~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~ 90 (229)
++..++.|+.+ ..+.++|..+.+ -...-.... ....++.+ ++++++.|+.++ .+.++|+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56667777654 468899998876 322211111 11222222 566777776443 57888987765
Q ss_pred eEE--EeccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 91 RFH--SFEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 91 ~~~--~~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
... .+......-.++.+ ++.+++.|+.+ ..+.+||+... +.....+......-..+.+ ++.+++.|+
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 214 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGG 214 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeC
Confidence 322 22211111122222 55666766654 45788887653 2211111111111112222 456777777
Q ss_pred CC-----CcEEEEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 163 LD-----RTVKVWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 163 ~d-----~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
.+ ..+.+||..+.+= ..+..- ...-.+... . ++.+++.|+.+ ..|.+||.++.+
T Consensus 215 ~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~-~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCYVGATV-L--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BCSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE-E--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCcE-EECCCCCCcccceeEEE-E--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 64 4688888875431 112111 111112222 1 33466666654 468899988764
No 298
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.13 E-value=0.051 Score=41.21 Aligned_cols=166 Identities=8% Similarity=0.094 Sum_probs=102.0
Q ss_pred CcCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCcceEEEeccC-CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy4653 57 DLPVRAAKFVPRKNW-IVTGSDDMQVCVFNYNTLERFHSFEAH-SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC 134 (229)
Q Consensus 57 ~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~ 134 (229)
...+..++|.|+++. .++...++.|...|.+ ++.++.+.-. ......|++.+++.++++.-.++.+.++++......
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 357999999998764 4557778888889987 7777665321 235688999998887777767788999987544321
Q ss_pred --eeeee------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC---CCCceEEEe-------cCCCceEEEEEEeC
Q psy4653 135 --QQVFE------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG---SASPNFTLE-------GHEKGVNCVDYYHG 196 (229)
Q Consensus 135 --~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~-------~h~~~v~~~~~~~~ 196 (229)
..... ........++++|.. ..|..+.......+|.+. ....+..+. .+...+..++|.+.
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 11111 112335789999854 444445544444555443 111122221 12234678888653
Q ss_pred CCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 197 GDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 197 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
.+.+++.....+.+..+|.+ ++.+..+.
T Consensus 184 -tg~lliLS~~s~~L~~~d~~-g~~~~~~~ 211 (255)
T 3qqz_A 184 -KNTLLVLSHESRALQEVTLV-GEVIGEMS 211 (255)
T ss_dssp -TTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred -CCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence 44566666677888899976 44655543
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.03 E-value=0.085 Score=41.89 Aligned_cols=151 Identities=10% Similarity=0.123 Sum_probs=89.5
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCC----C---EEEEEeC---CCcEEEEecCCceeeeeee
Q psy4653 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----P---FLLTSSD---DMLIKLWNWEKAWACQQVF 138 (229)
Q Consensus 69 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~----~---~~~s~~~---d~~v~lwd~~~~~~~~~~~ 138 (229)
..+++.....+-+.++|+ .++.++.+.. +.++-+++.|.- + +++++.. +++|.+|++..........
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345665566778999999 7788877754 567777777732 1 3344444 5799999774211112222
Q ss_pred e------cce-eeEEEEEE--cCCCCC-EEEEEECCCcEEEEeCC---CC----CceEEEecCCCceEEEEEEeCCCcCE
Q psy4653 139 E------GHT-HYVMQIVI--NPKDNN-TFASASLDRTVKVWQLG---SA----SPNFTLEGHEKGVNCVDYYHGGDKPY 201 (229)
Q Consensus 139 ~------~~~-~~v~~~~~--~~~~~~-~l~s~~~d~~i~~wd~~---~~----~~~~~~~~h~~~v~~~~~~~~~~~~~ 201 (229)
. +.. ..++.+++ +|.++. +++....++.+..|++. .+ +.++++.--. .+..+.+. +....
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~EgcvvD--d~~g~ 193 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAAD--DEYGR 193 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEEE--TTTTE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEEEc--CCCCe
Confidence 1 011 33455555 665554 56667788999999883 22 3345554433 45555553 34457
Q ss_pred EEEeeCCCeEEEEECC-----CCeEEEee
Q psy4653 202 LISGADDRLVKIWDYQ-----NKTCVQTL 225 (229)
Q Consensus 202 l~s~s~d~~i~iwd~~-----~~~~~~~~ 225 (229)
|..+-+|.-|--++.+ +++.+..+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~ 222 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRA 222 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEe
Confidence 8888888766666654 34555544
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.00 E-value=0.086 Score=41.49 Aligned_cols=158 Identities=13% Similarity=0.187 Sum_probs=97.5
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEE-Eecc----CCC--ceeEEEE---cCCCCEEEEEe---------
Q psy4653 59 PVRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLERFH-SFEA----HSD--YVRCVAV---HPTQPFLLTSS--------- 118 (229)
Q Consensus 59 ~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~-~~~~----h~~--~i~~v~~---~~~~~~~~s~~--------- 118 (229)
.--+..|.+....|..++ ..+.|..||...+.... .+.. ... .+..|.| .|++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 345678887666555555 68999999987554322 2322 111 3578999 68877776544
Q ss_pred ----CCCcEEEEecC---Cceeeeee-eec-----------ceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCce
Q psy4653 119 ----DDMLIKLWNWE---KAWACQQV-FEG-----------HTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPN 178 (229)
Q Consensus 119 ----~d~~v~lwd~~---~~~~~~~~-~~~-----------~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~ 178 (229)
.+..|..+|+. ++.....+ +.. -......++..+ +++..++++.. +.|...+.......
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 26789999987 44332221 111 112467888887 68899998888 88777776543211
Q ss_pred -EEEec----CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 179 -FTLEG----HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 179 -~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
+-+.. .....+.+++.+ ++..|+....+|.+.-+|+++.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred eeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 11111 122356788854 4445555555999999998754
No 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.99 E-value=0.071 Score=41.09 Aligned_cols=185 Identities=5% Similarity=0.020 Sum_probs=89.7
Q ss_pred CCCeEEEEEec----CeEEEEEcCCCCeEEEEEecC--cCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCcceEE
Q psy4653 26 TEPWMLASLYN----GHVHVWNHETNQNVKSFEVCD--LPVRAAKFVPRKNWIVTGSDD------MQVCVFNYNTLERFH 93 (229)
Q Consensus 26 ~~~~l~~~~~d----g~v~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d------~~i~iwd~~~~~~~~ 93 (229)
++..++.|+.+ ..+.++|..+.+-...-.... .....+.+ ++++++.|+.+ ..+.+||+.+.+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 56666777654 678889988875433211111 11222222 56677777655 358888988765432
Q ss_pred EeccCCCce-eEEEEcCCCCEEEEEeC---------CCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 94 SFEAHSDYV-RCVAVHPTQPFLLTSSD---------DMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 94 ~~~~h~~~i-~~v~~~~~~~~~~s~~~---------d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
.-.....+. .+++. -++.+++.|+. -..+.+||+... +.....+......-..+.+ ++.+++.|+
T Consensus 133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 208 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGG 208 (306)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeC
Confidence 211111111 12222 24556665543 345778887654 1111111110111111222 356777776
Q ss_pred CC-----CcEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 163 LD-----RTVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 163 ~d-----~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
.+ ..+.+||..+.+ .+..+........++.+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV----GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE----TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE----CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 54 357888886542 11111111111222222 33466666643 568999998764
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.99 E-value=0.088 Score=41.47 Aligned_cols=197 Identities=14% Similarity=0.228 Sum_probs=120.7
Q ss_pred EEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEeccC
Q psy4653 20 CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFHSFEAH 98 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h 98 (229)
++--||..+.++-=+ ..+++++|+++...++.+... +.|.-=.|..+. .|+-.+ +..|.-|+++. ..+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 344588888666654 789999999998887777654 456666666444 443332 56789999864 4567777766
Q ss_pred CC----ceeEEEEcCCCCEEE-EEe------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcC--CCCCEEEEEEC--
Q psy4653 99 SD----YVRCVAVHPTQPFLL-TSS------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP--KDNNTFASASL-- 163 (229)
Q Consensus 99 ~~----~i~~v~~~~~~~~~~-s~~------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~-- 163 (229)
.. .|.....+++.+.++ +|- -.|.+.||..++. ..+.++||......+.+.. ....+|.-+..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--ccceeeeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 43 455666677777543 331 1367889998764 5778899987665554421 11123333332
Q ss_pred -CCcEEEEeCCCC---CceE---EEe---cC---CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653 164 -DRTVKVWQLGSA---SPNF---TLE---GH---EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224 (229)
Q Consensus 164 -d~~i~~wd~~~~---~~~~---~~~---~h---~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 224 (229)
.+++++-++... .+.+ ..+ .. .+-..++.. +....++..-..=|.|.+||+.++.|+-.
T Consensus 225 ~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv--s~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 225 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI--SEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE--ETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe--cccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 257888887432 1111 111 11 111233443 23344666677889999999999998754
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.93 E-value=0.11 Score=41.34 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=79.4
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE--EE---ecCcCeEEEEEcCC---CCEEEEEeC-C-----CeEE
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS--FE---VCDLPVRAAKFVPR---KNWIVTGSD-D-----MQVC 82 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~--~~---~~~~~v~~~~~~~~---~~~l~sg~~-d-----~~i~ 82 (229)
.-..++|.|++. ++++..+|.|.+++ +++.... +. ........+.++|+ +..|..... . ..|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 446899999998 55556679999998 4432111 11 11345789999998 444444332 2 5677
Q ss_pred EEECCCcc-----eE-EEec---cCCCceeEEEEcCCCCEEEEEeCC-------------CcEEEEecCCc---------
Q psy4653 83 VFNYNTLE-----RF-HSFE---AHSDYVRCVAVHPTQPFLLTSSDD-------------MLIKLWNWEKA--------- 131 (229)
Q Consensus 83 iwd~~~~~-----~~-~~~~---~h~~~i~~v~~~~~~~~~~s~~~d-------------~~v~lwd~~~~--------- 131 (229)
.++..... .+ ..+. .....-..++|.|++.++++.+.. ++|..++.+..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 77765431 11 2232 111123689999999876665421 45666655431
Q ss_pred ---eeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 132 ---WACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 132 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
......-.++. ....++++|.++.++++-.
T Consensus 189 ~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 189 RRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred CCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence 01111122332 2456778885666666544
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.86 E-value=0.072 Score=40.95 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=87.6
Q ss_pred CCCeEEEEEec-----CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEE
Q psy4653 26 TEPWMLASLYN-----GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNTLERFHS 94 (229)
Q Consensus 26 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~ 94 (229)
++..++.|+.+ ..+.+||..+.+-...-.... ..-.++... +++.++.|+.++ .+.+||+.+.+....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 55566666644 357888888765422211111 011122222 566677776553 467788877653222
Q ss_pred --eccCCCceeEEEEcCCCCEEEEEeCC-------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653 95 --FEAHSDYVRCVAVHPTQPFLLTSSDD-------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLD 164 (229)
Q Consensus 95 --~~~h~~~i~~v~~~~~~~~~~s~~~d-------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 164 (229)
+......-.++.+ ++.+++.|+.+ ..+.+||+... +.....+......-..+.+ ++.+++.|+.+
T Consensus 140 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~ 214 (302)
T 2xn4_A 140 APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHD 214 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBS
T ss_pred CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCC
Confidence 1111111122222 45566666542 35788887654 2211111111111112222 45677777764
Q ss_pred -----CcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 165 -----RTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 165 -----~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
..+.+||..+.+ -..+..... .-.++.. . ++.+++.|+.+ ..+.+||.++.+
T Consensus 215 ~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~-~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNA-WRQVADMNMCRRNAGVCA-V--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE-E--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCC-EeeCCCCCCccccCeEEE-E--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 367888886542 111211111 1111222 1 33466666654 348999998765
No 305
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.86 E-value=0.067 Score=39.64 Aligned_cols=103 Identities=11% Similarity=-0.042 Sum_probs=64.3
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE------EEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV------KSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~------~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 88 (229)
..+..++|||++.+.++ .+|.+.--+..++... ..+.. .-....++.|.|+|.+-++ .||.|.=++..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36789999998874444 7888776666553221 11111 0112578999999988777 568887666532
Q ss_pred cce-------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEE
Q psy4653 89 LER-------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124 (229)
Q Consensus 89 ~~~-------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~ 124 (229)
... ...-..--+.+..|.|.|++.+.+.. |+.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 111 11111122568999999999988777 66653
No 306
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.83 E-value=0.15 Score=41.60 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=85.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEeccC--C--CceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eee-------
Q psy4653 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAH--S--DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQ------- 135 (229)
Q Consensus 68 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h--~--~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~------- 135 (229)
++.-++.+ .++.||.-++......+.++.. - +.|..+..+|+|.+++..+ +..|.|-.+..+. ...
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 44444443 3466776666644444444432 1 2478899999999998775 5688888886321 000
Q ss_pred ---eeeec------ceeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCC--CceEEEe---------cCCCceEEEEE
Q psy4653 136 ---QVFEG------HTHYVMQIVINPKD--NNTFASASLDRTVKVWQLGSA--SPNFTLE---------GHEKGVNCVDY 193 (229)
Q Consensus 136 ---~~~~~------~~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~--~~~~~~~---------~h~~~v~~~~~ 193 (229)
+.+.- ...+|.++.|+|.. +..|+.=..|+.||+||+... +|. .+. .....+.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 11111 24679999999852 347888899999999998752 333 332 22245667777
Q ss_pred EeCCCcC--EEEEeeCCCeEEE
Q psy4653 194 YHGGDKP--YLISGADDRLVKI 213 (229)
Q Consensus 194 ~~~~~~~--~l~s~s~d~~i~i 213 (229)
. +++- |+++.+..|.|+-
T Consensus 188 g--~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 S--KDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp C--TTSSCEEEEECTTSCEEEE
T ss_pred c--CCCcEEEEEecCCCCCEEE
Confidence 3 3332 3444557777743
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.79 E-value=0.17 Score=41.55 Aligned_cols=197 Identities=15% Similarity=0.245 Sum_probs=122.3
Q ss_pred EEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEeccC
Q psy4653 20 CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFHSFEAH 98 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h 98 (229)
++--||..+.++-=+ ..+++++|+++...++.+...+ .|.-=.|..+ +.|+-. .+..|.-|+++. ..+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 455688888666654 7899999999988888776544 4555555533 444443 356789999864 4567777766
Q ss_pred CC----ceeEEEEcCCCCEEE-EEe------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC--CCCEEEEEECC-
Q psy4653 99 SD----YVRCVAVHPTQPFLL-TSS------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK--DNNTFASASLD- 164 (229)
Q Consensus 99 ~~----~i~~v~~~~~~~~~~-s~~------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d- 164 (229)
.. .|.....+++.+.++ +|- -.|.+.+|..++. ..+.++||......+..... ...+|.-+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 43 455666678877543 331 2367889998764 57888999877665554311 11234444432
Q ss_pred --CcEEEEeCCCC---CceE---EEe----c-C-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653 165 --RTVKVWQLGSA---SPNF---TLE----G-H-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224 (229)
Q Consensus 165 --~~i~~wd~~~~---~~~~---~~~----~-h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 224 (229)
+++++-++... .+.+ ..+ . . .+-..++.. +....++..-..-|.|.+||+.++.++-.
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv--s~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI--SEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE--ETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe--cccCCEEEEEecCceEEEEecccceeeee
Confidence 68888887543 1111 111 1 0 111233444 33445666778889999999999998754
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.65 E-value=0.14 Score=39.29 Aligned_cols=185 Identities=10% Similarity=0.071 Sum_probs=88.5
Q ss_pred CCCeEEEEE-ec-----CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCcc---
Q psy4653 26 TEPWMLASL-YN-----GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDD-----MQVCVFNYNTLE--- 90 (229)
Q Consensus 26 ~~~~l~~~~-~d-----g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~--- 90 (229)
++..++.|+ .+ ..+.++|..+.+-...-.... ..-.++.. .++++++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 445666666 33 478889988865422211101 01112222 256677777754 358888987765
Q ss_pred eEEE--eccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653 91 RFHS--FEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 91 ~~~~--~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
.... +......-.++.+ ++.+++.|+.+ ..+.+||+.... ............-..+.+ ++.+++.|+
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG 167 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGG 167 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECC
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECC
Confidence 3221 2111111122222 45666666543 357788876532 211111111111111222 456777777
Q ss_pred CC-----CcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 163 LD-----RTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 163 ~d-----~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
.+ ..+..||..+.+= ..+..... .-.++... ++.+++.|+.+ ..+.+||.++.+
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 55 3577888765421 11111111 11122221 33466666653 468999998765
No 309
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0078 Score=47.70 Aligned_cols=191 Identities=11% Similarity=0.023 Sum_probs=100.1
Q ss_pred CeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEc--CCCCEEEEE--eCCCeEEEEECCCcceEEEeccC----
Q psy4653 28 PWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFV--PRKNWIVTG--SDDMQVCVFNYNTLERFHSFEAH---- 98 (229)
Q Consensus 28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~sg--~~d~~i~iwd~~~~~~~~~~~~h---- 98 (229)
..+++++.||.|.-.|..+|+.+..++... .+.....-. +.+..++.+ +.||.+..++.+++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 468899999999999999999999887541 222221111 112234433 68999999998887554433221
Q ss_pred CCceeE---EEE-c----CCCCEEEEEeCCCcEEEEecCCceeeeeeeecce-ee-----EEEEEEc----CCCCCEEEE
Q psy4653 99 SDYVRC---VAV-H----PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT-HY-----VMQIVIN----PKDNNTFAS 160 (229)
Q Consensus 99 ~~~i~~---v~~-~----~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~-~~-----v~~~~~~----~~~~~~l~s 160 (229)
..++.. ..+ . ..+..+++++.++.+...|+.++...-..-.+.. +. ..+.... ...+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111111 000 0 0345678889999999999887744322211111 10 0011100 012345666
Q ss_pred EECCCcEEEEeCCCCCceEEEe-----cCCCc--eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 161 ASLDRTVKVWQLGSASPNFTLE-----GHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 161 ~~~d~~i~~wd~~~~~~~~~~~-----~h~~~--v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
+..+..+.+.+ ++++ ++... ..... +.. .+....++.+ +.++.||.|.-+|.++|+.+
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~-~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLAL-QNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHT-TCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred ecceEEEEEEC-CCCC-eEEEeccccccccccccccc-ccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 66676666666 3343 33221 11000 000 0000112333 45788999999998888765
No 310
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.39 E-value=0.23 Score=38.35 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=73.4
Q ss_pred eEEEEEccCCCeEEEEEe----c-------CeEEEEEcCCCCeEEEEEecCcC--eEEEEEcCCCCEEEEEeCC------
Q psy4653 18 VKCCDLHPTEPWMLASLY----N-------GHVHVWNHETNQNVKSFEVCDLP--VRAAKFVPRKNWIVTGSDD------ 78 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~~----d-------g~v~~wd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~sg~~d------ 78 (229)
........++..++.|+. + ..+..||..+.+-... .....+ -.++... ++++++.|+.+
T Consensus 37 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~ 114 (315)
T 4asc_A 37 NHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGER 114 (315)
T ss_dssp SEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCEESCEEEEE-TTEEEEECCEESSTTCC
T ss_pred cceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCc
Confidence 333344457777788874 1 2377888887654221 111101 1112222 56666677632
Q ss_pred --CeEEEEECCCcceEEEeccCCCce-eEEEEcCCCCEEEEEeC-C-----CcEEEEecCCc-eeeeeeeecceeeEEEE
Q psy4653 79 --MQVCVFNYNTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSSD-D-----MLIKLWNWEKA-WACQQVFEGHTHYVMQI 148 (229)
Q Consensus 79 --~~i~iwd~~~~~~~~~~~~h~~~i-~~v~~~~~~~~~~s~~~-d-----~~v~lwd~~~~-~~~~~~~~~~~~~v~~~ 148 (229)
..+.++|+.+.+-...-.....+. .+++. .++.+++.|+. + ..+.+||+... +.....+......-..+
T Consensus 115 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 193 (315)
T 4asc_A 115 CLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT 193 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred ccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE
Confidence 358888988765322111111111 12222 34556666665 2 46888887654 22111111111111122
Q ss_pred EEcCCCCCEEEEEECCC-----cEEEEeCCCC
Q psy4653 149 VINPKDNNTFASASLDR-----TVKVWQLGSA 175 (229)
Q Consensus 149 ~~~~~~~~~l~s~~~d~-----~i~~wd~~~~ 175 (229)
.+ ++.+++.|+.++ .+.+||..+.
T Consensus 194 ~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 194 VH---DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EE---TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EE---CCEEEEEeccCCCCccceEEEEECCCC
Confidence 22 456777777654 4777887654
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.36 E-value=0.19 Score=38.54 Aligned_cols=183 Identities=10% Similarity=0.084 Sum_probs=85.6
Q ss_pred CCeEEEEEec----CeEEEEEcCCCCeEEEEEecCc--CeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEE-
Q psy4653 27 EPWMLASLYN----GHVHVWNHETNQNVKSFEVCDL--PVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNTLERFHS- 94 (229)
Q Consensus 27 ~~~l~~~~~d----g~v~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~- 94 (229)
+..++.|+.+ ..+..+|..+.+-... ..... .-.++... ++++++.|+.++ .+.+||+.+.+....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQV-AELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEc-ccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455566543 4678899887653222 11111 11122222 566777776543 578888877653222
Q ss_pred -eccCCCceeEEEEcCCCCEEEEEeCCC-----cEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECC---
Q psy4653 95 -FEAHSDYVRCVAVHPTQPFLLTSSDDM-----LIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLD--- 164 (229)
Q Consensus 95 -~~~h~~~i~~v~~~~~~~~~~s~~~d~-----~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--- 164 (229)
+......-.++.+ ++.+++.|+.++ .+.+||+... +.....+......-..+.+ ++.+++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVAS 168 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTT
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCC
Confidence 1111111122222 456666666543 4667887543 1111111111111111222 35667766643
Q ss_pred ----CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 165 ----RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 165 ----~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
..+.+||..+.+= +..+...... .++... ++.+++.|+.+ ..+.+||.++.+
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CccccEEEEEeCCCCcEEECCCCcccccc-ccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 3477888765421 1111111111 122221 33466666654 468899988764
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.35 E-value=0.27 Score=38.75 Aligned_cols=182 Identities=9% Similarity=0.105 Sum_probs=107.4
Q ss_pred ecCeEEEEEcCC-CCeEEEEEecC----cCeEEEEEcCCCCEEEEEe-------CCCeEEEEECCCcceEEEeccCCCce
Q psy4653 35 YNGHVHVWNHET-NQNVKSFEVCD----LPVRAAKFVPRKNWIVTGS-------DDMQVCVFNYNTLERFHSFEAHSDYV 102 (229)
Q Consensus 35 ~dg~v~~wd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg~-------~d~~i~iwd~~~~~~~~~~~~h~~~i 102 (229)
.+..|.-|+++. ..+.+.|..+. -.+..-..+++.++++..+ -.|.+.+|..+.. .-+.+++|.+..
T Consensus 124 T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 202 (365)
T 2xzh_A 124 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 202 (365)
T ss_dssp ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEE
T ss_pred cCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeee
Confidence 367899999975 45667776553 3467777788888754443 2367889988754 446677886655
Q ss_pred eEEEEcCCC--C-EEEEEeC---CCcEEEEecCCce----e----eeeee-e--cceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653 103 RCVAVHPTQ--P-FLLTSSD---DMLIKLWNWEKAW----A----CQQVF-E--GHTHYVMQIVINPKDNNTFASASLDR 165 (229)
Q Consensus 103 ~~v~~~~~~--~-~~~s~~~---d~~v~lwd~~~~~----~----~~~~~-~--~~~~~v~~~~~~~~~~~~l~s~~~d~ 165 (229)
..+.+..+. . +|+-+.. .+++.+-++.... . ...++ . ...+-...+.+++. -..+.--..-|
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k-ygviyviTK~G 281 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYG 281 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT-TTEEEEEETTS
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEeccc-CCEEEEEeCCc
Confidence 444443221 1 2332222 1477787774321 0 01111 1 11223345555553 34666678899
Q ss_pred cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
.|.+||+.++.+++.-+--.+.+...+......+ ++.-...|.|.--.++..+
T Consensus 282 ~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~G--i~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 282 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAG--IIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTE--EEEEETTCEEEEEEECTTT
T ss_pred EEEEEEcccCcEEEEeccCCCceEEecccCCCCc--EEEEcCCCEEEEEEECccc
Confidence 9999999999999887766667765554333232 4445577777655555443
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.30 E-value=0.18 Score=38.87 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=88.4
Q ss_pred CCCeEEEEEe----c-----CeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCc
Q psy4653 26 TEPWMLASLY----N-----GHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDD-----MQVCVFNYNTL 89 (229)
Q Consensus 26 ~~~~l~~~~~----d-----g~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~ 89 (229)
++..++.|+. + +.+.++|..+.+-...-... -.....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666666665 2 46788888876532221100 011222222 56677776643 35778888776
Q ss_pred ceEEE--eccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653 90 ERFHS--FEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASA 161 (229)
Q Consensus 90 ~~~~~--~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 161 (229)
+.... +......-.++.+ ++.+++.|+.+ ..+.+||+... +.....+......-..+.+ ++.+++.|
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~G 222 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAG 222 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEe
Confidence 53221 1111111122222 55666666654 45788887653 1111111111111112222 45677777
Q ss_pred ECC-----CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 162 SLD-----RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 162 ~~d-----~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
+.+ ..+.+||+.+.+= +..+..... -.++... ++.+++.|+.+ ..+.+||.++.+
T Consensus 223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRS-ALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCCccceEEEEeCCCCcEEECCCCCCCcc-ceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 765 4688888865421 111111111 1122221 23466666543 468899998764
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.25 E-value=0.69 Score=42.84 Aligned_cols=142 Identities=11% Similarity=0.125 Sum_probs=84.7
Q ss_pred CCeEEEEE----------ecCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE-
Q psy4653 27 EPWMLASL----------YNGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS- 94 (229)
Q Consensus 27 ~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~- 94 (229)
.+++++|+ ..|.|.++++..++....++ ..+.++.+++-. +|+ |++| -..++++|++...+.++.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~-ig~~l~vy~l~~~~~L~~~ 920 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLAS-INSTVRLYEWTTEKELRTE 920 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEE-ETTEEEEEEECTTSCEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEE-cCCEEEEEECCCCceEEEE
Confidence 46788886 23789999987554433322 235678888755 354 4444 357899999976554441
Q ss_pred eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172 (229)
Q Consensus 95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 172 (229)
..... .|..+...-.+.+++.|..-.+|.+...+........+ .-..-.++++.+-. ...++.+..++.+.+...
T Consensus 921 ~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 921 CNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEE
T ss_pred eeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc--cCcEEEEcCCCcEEEEec
Confidence 11111 13343444456788899887787765533221112222 22344566776642 357788899999999876
Q ss_pred CC
Q psy4653 173 GS 174 (229)
Q Consensus 173 ~~ 174 (229)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.15 E-value=0.31 Score=37.42 Aligned_cols=182 Identities=6% Similarity=0.013 Sum_probs=87.1
Q ss_pred CeEEEEEe--cCeEEEEEcCCCCeEEEE--EecCcCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCcceEEEeccCC
Q psy4653 28 PWMLASLY--NGHVHVWNHETNQNVKSF--EVCDLPVRAAKFVPRKNWIVTGSDD----MQVCVFNYNTLERFHSFEAHS 99 (229)
Q Consensus 28 ~~l~~~~~--dg~v~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~h~ 99 (229)
..++.|+. ...+.+||..+.+-...- ...-.....+. .++++++.|+.+ ..+.++|+.+.+....-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 467889999887543221 11011122222 256677777654 568888988765432211111
Q ss_pred Cc--eeEEEEcCCCCEEEEEeCC------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-------
Q psy4653 100 DY--VRCVAVHPTQPFLLTSSDD------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASL------- 163 (229)
Q Consensus 100 ~~--i~~v~~~~~~~~~~s~~~d------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------- 163 (229)
.+ -.++.+ ++.+++.|+.+ ..+.+||.... +.....+......-..+.+ ++.+++.|+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTC
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcc
Confidence 11 122222 55666767654 45888887654 2211111110111111222 4566666653
Q ss_pred --CCcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 164 --DRTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 164 --d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
-..+.+||..+.+ -..+..... .-.++... ++.+++.|+.+ ..+.+||..+.+
T Consensus 166 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 166 RVLNSCEVYDPATET-WTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp EECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred cccceEEEeCCCCCe-EEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 2347788886542 111211111 11122221 23455555543 458889988764
No 316
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.09 E-value=0.072 Score=46.01 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=68.2
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCcce--EEEecc-CCCceeEEEEcCCCCEEEEEeC-CCcEEE
Q psy4653 62 AAKFVP-RKNWIVTGSDDM-----------QVCVFNYNTLER--FHSFEA-HSDYVRCVAVHPTQPFLLTSSD-DMLIKL 125 (229)
Q Consensus 62 ~~~~~~-~~~~l~sg~~d~-----------~i~iwd~~~~~~--~~~~~~-h~~~i~~v~~~~~~~~~~s~~~-d~~v~l 125 (229)
++++.+ ++++++.|+.+. .+.+||+.+++. +..+.. +.....++++..++.+++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 788888887543 578899887653 222221 2333446788899999988884 568999
Q ss_pred EecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEE-CC-----CcEEEEeCCCC
Q psy4653 126 WNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASAS-LD-----RTVKVWQLGSA 175 (229)
Q Consensus 126 wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d-----~~i~~wd~~~~ 175 (229)
||.... +.....+...... ..+...+ ++.+++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~-~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGY-QSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSS-CEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccccc-cceEEec-CCeEEEEeCcccCCcccccceEeCCCCC
Confidence 998654 1111111111111 2233333 578888888 44 56889998654
No 317
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.08 E-value=0.89 Score=42.11 Aligned_cols=171 Identities=11% Similarity=0.208 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCeEEEEEecC-cCeEEEE---EcCC-CCEEEEEe----------CCCeEEEEECCCcceEEEe--ccCCC
Q psy4653 38 HVHVWNHETNQNVKSFEVCD-LPVRAAK---FVPR-KNWIVTGS----------DDMQVCVFNYNTLERFHSF--EAHSD 100 (229)
Q Consensus 38 ~v~~wd~~~~~~~~~~~~~~-~~v~~~~---~~~~-~~~l~sg~----------~d~~i~iwd~~~~~~~~~~--~~h~~ 100 (229)
.|++.|..+.+.+..++..+ +.+.++. |..+ ..+|++|+ ..|.|.++++...+ +..+ ....+
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g 886 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESS
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCC
Confidence 47788888877777666543 2344444 3322 46888887 35789999886432 2221 12356
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceE
Q psy4653 101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179 (229)
Q Consensus 101 ~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 179 (229)
.+++++--. |.++++. ..+|++|++....... .+. +-..+..+.+.. .+++++.|..-..+.+...+......
T Consensus 887 ~v~al~~~~-g~Lla~i--g~~l~vy~l~~~~~L~--~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L 960 (1158)
T 3ei3_A 887 AVYSMVEFN-GKLLASI--NSTVRLYEWTTEKELR--TECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNF 960 (1158)
T ss_dssp CEEEEEEET-TEEEEEE--TTEEEEEEECTTSCEE--EEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEE
T ss_pred cCEEEeeeC-CEEEEEc--CCEEEEEECCCCceEE--EEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeE
Confidence 788876443 4333333 4699999997543222 111 111122222222 35678888877777776654333222
Q ss_pred E-E--ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 180 T-L--EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 180 ~-~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
. + ..+...+.++.+... ..++.+..+|.+.+.....
T Consensus 961 ~~~a~D~~~~~vta~~~ld~---~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 961 EEIARDFNPNWMSAVEILDD---DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEECCSCBCEEEEEEEET---TEEEEEETTSEEEEEEECT
T ss_pred EEEEeecccccEEEEEEEcc---CcEEEEcCCCcEEEEecCC
Confidence 2 2 223455777777532 2577788999999887654
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.02 E-value=0.42 Score=37.89 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=103.4
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-eEEEEE---ecCcCeEEEEEcCC---CCEEEEEeC----C----CeE
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVKSFE---VCDLPVRAAKFVPR---KNWIVTGSD----D----MQV 81 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~sg~~----d----~~i 81 (229)
.-..++|.|++. |+++..+|.|+++| .+++ .+..+. ........+.++|+ +..|..... + ..|
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 457899999997 55666679999997 3444 111111 11245788999997 444444332 2 456
Q ss_pred EEEECCCc-------ceE-EEecc-CCCceeEEEEcCCCCEEEEEeCC-------------CcEEEEecCCce-------
Q psy4653 82 CVFNYNTL-------ERF-HSFEA-HSDYVRCVAVHPTQPFLLTSSDD-------------MLIKLWNWEKAW------- 132 (229)
Q Consensus 82 ~iwd~~~~-------~~~-~~~~~-h~~~i~~v~~~~~~~~~~s~~~d-------------~~v~lwd~~~~~------- 132 (229)
..|+.... +.+ ..+.. ....-..|+|.|++.++++.+.. ++|...+.+..-
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 67766543 111 11221 11123579999999877765431 455555543210
Q ss_pred eeeeeeecceeeEEEEEEcCCCCCEEEEEECCC---cEEEEeCCC----------------CCceEEE-ecCCCceEEEE
Q psy4653 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDR---TVKVWQLGS----------------ASPNFTL-EGHEKGVNCVD 192 (229)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~----------------~~~~~~~-~~h~~~v~~~~ 192 (229)
.....-.++.. ...++|+|.++.++++-.... +|.+-.... ..+...+ ..| .....+.
T Consensus 188 ~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-~ap~G~~ 265 (354)
T 3a9g_A 188 NSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET-WAPSGAS 265 (354)
T ss_dssp TCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CCEEEEE
T ss_pred CCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC-cCCcceE
Confidence 01111123322 356788885566666543222 233332111 0123333 222 2355666
Q ss_pred EEeC-----CCcCEEEEeeCCCeEEEEECCC
Q psy4653 193 YYHG-----GDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 193 ~~~~-----~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
|+.. .++.++++....+.|...++..
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 6422 2344666656667787777764
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.92 E-value=0.55 Score=38.34 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=82.6
Q ss_pred ecCeEEEEEcCCCCeEEEEEec----CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc------------eEEEecc-
Q psy4653 35 YNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE------------RFHSFEA- 97 (229)
Q Consensus 35 ~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~------------~~~~~~~- 97 (229)
.++.|+.-++.....-+.+... ...+..+..+|+|++||..+.. .|.|-.+..+. .++.+.-
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcC
Confidence 3577886677754332333332 1257889999999999888544 57777765211 1222321
Q ss_pred -----CCCceeEEEEcCCC---CEEEEEeCCCcEEEEecCCceeeeeeee---------cceeeEEEEEEcCCCCCEEEE
Q psy4653 98 -----HSDYVRCVAVHPTQ---PFLLTSSDDMLIKLWNWEKAWACQQVFE---------GHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 98 -----h~~~i~~v~~~~~~---~~~~s~~~d~~v~lwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~s 160 (229)
....|..+.|||-+ ..+++-..|+.|++||+.........+. .....+..++|.+ ++-.|..
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYv 196 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYC 196 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEE
Confidence 24679999999964 4799999999999999975211101111 1124467778876 4555544
Q ss_pred EE--CCCcEEEE
Q psy4653 161 AS--LDRTVKVW 170 (229)
Q Consensus 161 ~~--~d~~i~~w 170 (229)
.+ .+|-|+..
T Consensus 197 l~~t~~GDIYAl 208 (452)
T 3pbp_A 197 LNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSCEEEEE
T ss_pred EecCCCCCEEEE
Confidence 34 66777644
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.92 E-value=0.35 Score=45.48 Aligned_cols=195 Identities=15% Similarity=0.233 Sum_probs=112.3
Q ss_pred EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCC
Q psy4653 21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFHSFEAHS 99 (229)
Q Consensus 21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~ 99 (229)
+--||..+.++-=+ ..+++++|+++...++.+...+ +|.-=.|..+. .|+-. .+..|..|++.. ..+.+.+..|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEE-cCCeEEEeccCCCCccHHHHhcch
Confidence 34578887665544 7899999999977777665433 45555555433 33333 256789999863 34555555552
Q ss_pred ----CceeEEEEcCCCCEEE-EE------eCCCcEEEEecCCceeeeeeeecceeeEEEEEEc--CCCCCEEEEEEC---
Q psy4653 100 ----DYVRCVAVHPTQPFLL-TS------SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN--PKDNNTFASASL--- 163 (229)
Q Consensus 100 ----~~i~~v~~~~~~~~~~-s~------~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~--- 163 (229)
..|..-..+++.+.++ +| .-.|.+.+|+.++. ..+.++||.......... +....+|..+..
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence 3455566677777543 33 13478889998653 567778886655444432 211223332222
Q ss_pred CCcEEEEeCCCC---CceEEEe------cC---CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653 164 DRTVKVWQLGSA---SPNFTLE------GH---EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223 (229)
Q Consensus 164 d~~i~~wd~~~~---~~~~~~~------~h---~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 223 (229)
.+++++-++... .+.+..+ .. .+-..++.. ++...++..-+.-|.|.++|+.++.++-
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v--s~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI--SEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe--ccccCEEEEEecCceEEEEecccchhhh
Confidence 368888887542 1211111 00 000112222 2334466667788999999999998763
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.80 E-value=0.37 Score=37.08 Aligned_cols=187 Identities=11% Similarity=0.042 Sum_probs=89.0
Q ss_pred EccCCCeEEEEEe----cCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC----C-----CeEEEEECCC
Q psy4653 23 LHPTEPWMLASLY----NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD----D-----MQVCVFNYNT 88 (229)
Q Consensus 23 ~~p~~~~l~~~~~----dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~----d-----~~i~iwd~~~ 88 (229)
..-++..++.|+. -..+.++|..+.+-...-.... ..-.++... ++++++.|+. + ..+.++|+.+
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3445667777764 2468889988765432210000 011122222 5666677665 2 3577888877
Q ss_pred cceEEE--eccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653 89 LERFHS--FEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 89 ~~~~~~--~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s 160 (229)
.+.... +......-.++.+ ++.+++.|+.+ ..+.+||+.... .....+......-..+.+ ++.+++.
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~ 174 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAV 174 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEE
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEE
Confidence 653221 1111111122222 45666666543 357788876531 111111111111112222 4567777
Q ss_pred EECC-----CcEEEEeCCCCCceEEE-ec--CCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 161 ASLD-----RTVKVWQLGSASPNFTL-EG--HEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 161 ~~~d-----~~i~~wd~~~~~~~~~~-~~--h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
|+.+ ..+..||..+.+ ++. .. ....-.+.... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 7754 357788876542 111 11 01111122221 33466666654 568999988764
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.76 E-value=0.67 Score=38.16 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=59.0
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--------cCcCeEEEEEcCC---CCEEEEEeC--------
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--------CDLPVRAAKFVPR---KNWIVTGSD-------- 77 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~l~sg~~-------- 77 (229)
.-..++|.|+++++++-...+.|.+++..+++....... .+.....++|+|+ +..|.....
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 457999999998555544335799898766654322211 1234678999995 555444332
Q ss_pred -----CCeEEEEECCCc-------ceEE-Eecc-CCCceeEEEEcCCCCEEEEEeC
Q psy4653 78 -----DMQVCVFNYNTL-------ERFH-SFEA-HSDYVRCVAVHPTQPFLLTSSD 119 (229)
Q Consensus 78 -----d~~i~iwd~~~~-------~~~~-~~~~-h~~~i~~v~~~~~~~~~~s~~~ 119 (229)
...|.-++.... +.+. .+.. ....-..|+|.|++.++++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124444444221 1111 1221 1224679999999997776553
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.63 E-value=0.45 Score=37.38 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCCeEEEEEe-c---------CeEEEEEcCCCCeEEEEEec-C-cCeEEEEEcCCCCEEEEEeCC
Q psy4653 26 TEPWMLASLY-N---------GHVHVWNHETNQNVKSFEVC-D-LPVRAAKFVPRKNWIVTGSDD 78 (229)
Q Consensus 26 ~~~~l~~~~~-d---------g~v~~wd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~sg~~d 78 (229)
++.+++.|+. + +.+.++|..+.+-...-... . ..-.++.. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 5666677765 2 46888998876543221111 1 11122222 467777788754
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.62 E-value=0.76 Score=37.75 Aligned_cols=181 Identities=9% Similarity=0.100 Sum_probs=109.2
Q ss_pred ecCeEEEEEcCC-CCeEEEEEecC----cCeEEEEEcCCCCEEEEEe-------CCCeEEEEECCCcceEEEeccCCCce
Q psy4653 35 YNGHVHVWNHET-NQNVKSFEVCD----LPVRAAKFVPRKNWIVTGS-------DDMQVCVFNYNTLERFHSFEAHSDYV 102 (229)
Q Consensus 35 ~dg~v~~wd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg~-------~d~~i~iwd~~~~~~~~~~~~h~~~i 102 (229)
.+..|.-|+++. ..+.+.|..+. -.|..-..+++.+|++..+ -.|.+.+|..+.. .-+.+++|....
T Consensus 123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 368899999975 35667776653 3477777788889865433 2367889988754 336677887665
Q ss_pred eEEEEcCCCC---EEEEEeCC---CcEEEEecCCce--------eeeeee-e--cceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653 103 RCVAVHPTQP---FLLTSSDD---MLIKLWNWEKAW--------ACQQVF-E--GHTHYVMQIVINPKDNNTFASASLDR 165 (229)
Q Consensus 103 ~~v~~~~~~~---~~~s~~~d---~~v~lwd~~~~~--------~~~~~~-~--~~~~~v~~~~~~~~~~~~l~s~~~d~ 165 (229)
..+.+..+.. .+.-+... +++.+-++.... +...++ . ...+-...+.+++. -..+.--..-|
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK~G 280 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYG 280 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEETTS
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc-CCEEEEEecCc
Confidence 5555543221 33333332 678888775320 011111 1 11233345556664 34666678899
Q ss_pred cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
.|.++|+.++.+++.-+--.+.+...+..... +. ++.-...|.|.--.++..
T Consensus 281 ~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~G-i~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AG-IIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TE-EEEEETTCEEEEEEECTT
T ss_pred eEEEEecccceeeeeecccCCceEEecccCCC-Cc-EEEEccCceEEEEEEccc
Confidence 99999999999998877666667655543332 22 444457777665555443
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.47 E-value=0.64 Score=35.88 Aligned_cols=149 Identities=7% Similarity=-0.007 Sum_probs=68.9
Q ss_pred EEccCCCeEEEEEe----cC-------eEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCC-------CeEE
Q psy4653 22 DLHPTEPWMLASLY----NG-------HVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDD-------MQVC 82 (229)
Q Consensus 22 ~~~p~~~~l~~~~~----dg-------~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d-------~~i~ 82 (229)
....++..++.|+. ++ .+..+|..+.+-...-... ...-.++... ++++.+.|+.+ ..+.
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEE
Confidence 33456677777772 12 2777888776543221100 0111222222 56666677653 2477
Q ss_pred EEECCCcceEEEeccCCCcee-EEEEcCCCCEEEEEeC------CCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCC
Q psy4653 83 VFNYNTLERFHSFEAHSDYVR-CVAVHPTQPFLLTSSD------DMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKD 154 (229)
Q Consensus 83 iwd~~~~~~~~~~~~h~~~i~-~v~~~~~~~~~~s~~~------d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 154 (229)
++|+.+.+....-.....+.. +++. .++.+++.|+. -..+.+||+... +............-..+.+ +
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~ 206 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---K 206 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---T
T ss_pred EEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---C
Confidence 788877653322111111111 2222 35566666653 235888998654 2211111111111112222 4
Q ss_pred CCEEEEEECCC-----cEEEEeCCCC
Q psy4653 155 NNTFASASLDR-----TVKVWQLGSA 175 (229)
Q Consensus 155 ~~~l~s~~~d~-----~i~~wd~~~~ 175 (229)
+.+++.|+.+. .+.+||..+.
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CEEEEEcCcCCCCccceEEEEECCCC
Confidence 56777776443 4667887654
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.02 E-value=0.55 Score=34.82 Aligned_cols=138 Identities=7% Similarity=-0.079 Sum_probs=75.1
Q ss_pred cCCCeEEEEEecCeEEEEEcCCCCe------EEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce------
Q psy4653 25 PTEPWMLASLYNGHVHVWNHETNQN------VKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER------ 91 (229)
Q Consensus 25 p~~~~l~~~~~dg~v~~wd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~------ 91 (229)
|....|++...| +|..=...++.. ...... .-..+..+.|+|++.+-++ .+|.+.-.+..+.+.
T Consensus 2 ~~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 2 GGESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred CcceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence 344556666666 655444444331 112211 1246789999998886666 677655445433211
Q ss_pred EEEec-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee------eeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653 92 FHSFE-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC------QQVFEGHTHYVMQIVINPKDNNTFASASLD 164 (229)
Q Consensus 92 ~~~~~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 164 (229)
-..+- .-.....++.|.|++.+.++ .|+.|.-++-.+...- ..+-.+--..+..+.+.| ++.+.+.. |
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--d 153 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--G 153 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--C
Confidence 01110 01122579999999998888 5698887774321110 111111113467888888 57666654 7
Q ss_pred CcEEEE
Q psy4653 165 RTVKVW 170 (229)
Q Consensus 165 ~~i~~w 170 (229)
+.+.-+
T Consensus 154 g~lyr~ 159 (236)
T 1tl2_A 154 QQFYKA 159 (236)
T ss_dssp TEEEEE
T ss_pred CcEEec
Confidence 775443
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.85 E-value=1.8 Score=40.95 Aligned_cols=210 Identities=10% Similarity=0.112 Sum_probs=109.4
Q ss_pred hhhhcccCCC--ceEEEEEccCCCeEEEEEecCeEEEEEcCC-CCeEEEEEec----CcCeEEEEEcCCCCEEEEEe---
Q psy4653 7 IKRKLTARSD--RVKCCDLHPTEPWMLASLYNGHVHVWNHET-NQNVKSFEVC----DLPVRAAKFVPRKNWIVTGS--- 76 (229)
Q Consensus 7 ~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~--- 76 (229)
.+.+++.|.- +|.==.|-.... |+-. .+..|.-|++.. ..+.+.|..+ .-.|..-.-+++.+|++..+
T Consensus 95 ~k~klks~~~~e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~ 172 (1630)
T 1xi4_A 95 MKSKMKAHTMTDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (1630)
T ss_pred HhhhhcccccCCCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence 3445555543 333334443332 2222 357899999974 3444455444 23577777788888765433
Q ss_pred ----CCCeEEEEECCCcceEEEeccCCCceeEEEEcC--CCC-EEEEEeC---CCcEEEEecCCc----eee----eeee
Q psy4653 77 ----DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP--TQP-FLLTSSD---DMLIKLWNWEKA----WAC----QQVF 138 (229)
Q Consensus 77 ----~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~--~~~-~~~s~~~---d~~v~lwd~~~~----~~~----~~~~ 138 (229)
-.|.+.++..+.. .-+.+++|.+....+.... ... .+.-+.. .+++.|-++... ... ..++
T Consensus 173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~ 251 (1630)
T 1xi4_A 173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (1630)
T ss_pred CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence 3478889887653 2345566765544444431 112 2222211 257777777432 010 0111
Q ss_pred -e--cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653 139 -E--GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215 (229)
Q Consensus 139 -~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd 215 (229)
. ....-...+.+++.. ..+.--..-|.|.++|+.++.+++.-+--..+|...+...... . ++.-...|.|.--.
T Consensus 252 ~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~-g-~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 252 FPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA-G-IIGVNRKGQVLSVC 328 (1630)
T ss_pred CCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCC-c-eEEEcCCceEEEEE
Confidence 0 012223344555543 4555668889999999999988776654445555444332222 2 33334556655544
Q ss_pred CCCCeEE
Q psy4653 216 YQNKTCV 222 (229)
Q Consensus 216 ~~~~~~~ 222 (229)
+...+.+
T Consensus 329 v~~~~iv 335 (1630)
T 1xi4_A 329 VEEENII 335 (1630)
T ss_pred Eccchhh
Confidence 4444433
No 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.45 E-value=2.3 Score=37.05 Aligned_cols=194 Identities=9% Similarity=0.041 Sum_probs=97.3
Q ss_pred cCCCeEEEEEec----CeEEEEEcCCCCeEEEE-E------ecCcCeEEEEEcC-CCCEEEEEeCCC------eEEEEEC
Q psy4653 25 PTEPWMLASLYN----GHVHVWNHETNQNVKSF-E------VCDLPVRAAKFVP-RKNWIVTGSDDM------QVCVFNY 86 (229)
Q Consensus 25 p~~~~l~~~~~d----g~v~~wd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~sg~~d~------~i~iwd~ 86 (229)
.++..++.|+.+ +.+.++|..+++-...- . .....-.++...+ +++.++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456666777643 46888998887654332 1 0011123333343 677777776543 4778888
Q ss_pred CCcceEEEeccCCCce-eEEEEcCCCCEEEEEeCCC--cEEEEecCCc-eeeeee---eecceeeEEEEEEcCCCCCEEE
Q psy4653 87 NTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSSDDM--LIKLWNWEKA-WACQQV---FEGHTHYVMQIVINPKDNNTFA 159 (229)
Q Consensus 87 ~~~~~~~~~~~h~~~i-~~v~~~~~~~~~~s~~~d~--~v~lwd~~~~-~~~~~~---~~~~~~~v~~~~~~~~~~~~l~ 159 (229)
.+.+....-.....+. .+.+...++.+++.|+.++ .+.+||.... |..... .......-..+.++..++.+++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 7754322211111111 2333334777777776654 6889987654 221111 1000111122334433356777
Q ss_pred EEECC-------CcEEEEeCCCCCc-----eEEEec---CC-CceEEEEEEeCCCcCEEEEeeC--------CCeEEEEE
Q psy4653 160 SASLD-------RTVKVWQLGSASP-----NFTLEG---HE-KGVNCVDYYHGGDKPYLISGAD--------DRLVKIWD 215 (229)
Q Consensus 160 s~~~d-------~~i~~wd~~~~~~-----~~~~~~---h~-~~v~~~~~~~~~~~~~l~s~s~--------d~~i~iwd 215 (229)
.|+.+ ..+..||+.+..- -..+.. .. ....++.+ + ++.+++.|+. ...|.+||
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI--T-PRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE--E-TTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe--C-CCEEEEECCccCCCCCCCCCeEEEEE
Confidence 77752 3578888876651 112211 11 11122222 2 1345666663 34689999
Q ss_pred CCCCeE
Q psy4653 216 YQNKTC 221 (229)
Q Consensus 216 ~~~~~~ 221 (229)
..+.+-
T Consensus 633 ~~t~~W 638 (695)
T 2zwa_A 633 PLSETL 638 (695)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 987653
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.29 E-value=1.6 Score=34.54 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=76.6
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE---E----EecCcCeEEEEEcCC---CCEEEEE-eC-------C
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS---F----EVCDLPVRAAKFVPR---KNWIVTG-SD-------D 78 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~sg-~~-------d 78 (229)
.-..++|.|+++.++++...|.|++++.. ++.... + .........+.++|+ +..|... +. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999856666678999999854 322111 1 111234688999995 4444333 22 2
Q ss_pred CeEEEEECCCc--c--eEE----Eecc---CCCceeEEEEcCCCCEEEEEeCC-------------CcEEEEecCCce--
Q psy4653 79 MQVCVFNYNTL--E--RFH----SFEA---HSDYVRCVAVHPTQPFLLTSSDD-------------MLIKLWNWEKAW-- 132 (229)
Q Consensus 79 ~~i~iwd~~~~--~--~~~----~~~~---h~~~i~~v~~~~~~~~~~s~~~d-------------~~v~lwd~~~~~-- 132 (229)
..|.-+++... + ... .+.. ....-..|.|.|++.++++.+.. ++|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 24555655432 1 111 1111 11123579999999766665432 456666654320
Q ss_pred ----------eeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653 133 ----------ACQQVFEGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 133 ----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s 160 (229)
.....-.++. ....++|+|.++.++++
T Consensus 178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 1111112333 34678888855555554
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.13 E-value=1.7 Score=34.47 Aligned_cols=150 Identities=12% Similarity=0.183 Sum_probs=86.0
Q ss_pred EEEEEccCCCeEEEEE-------------ecCeEEEEEcCC--CCeEEEEEec-------CcCeEEEEEcC--CCC--EE
Q psy4653 19 KCCDLHPTEPWMLASL-------------YNGHVHVWNHET--NQNVKSFEVC-------DLPVRAAKFVP--RKN--WI 72 (229)
Q Consensus 19 ~~~~~~p~~~~l~~~~-------------~dg~v~~wd~~~--~~~~~~~~~~-------~~~v~~~~~~~--~~~--~l 72 (229)
..+...|+|. +++++ .+|.|.++|..+ ++. ..+... ...-..+.+.+ ++. ++
T Consensus 53 EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 53 EDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred ceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 4555667664 45554 689999999974 332 222221 12456676655 343 34
Q ss_pred EEEeC--CCeEEEEECCCc--c--eEEEeccC-CCceeEEEEcCCCCEEEEEe-----------------CCCcEEEEec
Q psy4653 73 VTGSD--DMQVCVFNYNTL--E--RFHSFEAH-SDYVRCVAVHPTQPFLLTSS-----------------DDMLIKLWNW 128 (229)
Q Consensus 73 ~sg~~--d~~i~iwd~~~~--~--~~~~~~~h-~~~i~~v~~~~~~~~~~s~~-----------------~d~~v~lwd~ 128 (229)
++-.. +..|.+|+++.. . .+..+.+. -...+.+.+.+++.++++.. ..+.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 457788876542 1 23334332 23568899999998877764 1244555554
Q ss_pred CCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174 (229)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 174 (229)
. .+..+.. .-...+.++|+|+...++++-+..++|..|++..
T Consensus 211 ~---~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 N---DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T---CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C---eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 2 2222222 2234578999994334555666788999999864
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.74 E-value=1.8 Score=33.25 Aligned_cols=179 Identities=6% Similarity=-0.001 Sum_probs=84.1
Q ss_pred EEEEEecCeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeC-----C--C----eEEEEECCCcceEEEec
Q psy4653 30 MLASLYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSD-----D--M----QVCVFNYNTLERFHSFE 96 (229)
Q Consensus 30 l~~~~~dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~-----d--~----~i~iwd~~~~~~~~~~~ 96 (229)
++.|+ ..+..||..+++-.. .... ...........++++++.|+. . . .+..||+.+.+....-.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 34444 678999999876533 1111 111222233446777777773 1 1 26677887765322111
Q ss_pred cCCCce-eEEEEcCCCCEEEEEeCC--------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-C-
Q psy4653 97 AHSDYV-RCVAVHPTQPFLLTSSDD--------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASL-D- 164 (229)
Q Consensus 97 ~h~~~i-~~v~~~~~~~~~~s~~~d--------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d- 164 (229)
....+- .+++.. ++.+++.|+.+ ..+.+||.... +.....+......-..+.+ ++.+++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTT
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCC
Confidence 111111 122222 45566666532 45888887654 2211111111111111222 4567777776 2
Q ss_pred ----CcEEEEeCCCCCceEEE-ecCC--CceEEEEEEeCCCcCEEEEeeCCC-----eEEEEECCCCe
Q psy4653 165 ----RTVKVWQLGSASPNFTL-EGHE--KGVNCVDYYHGGDKPYLISGADDR-----LVKIWDYQNKT 220 (229)
Q Consensus 165 ----~~i~~wd~~~~~~~~~~-~~h~--~~v~~~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~ 220 (229)
..+.+||..+.+ ++. ..-. ..-.+.... ++.+++.|+.++ .+.+||..+.+
T Consensus 161 ~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp SCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCe--EEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 367888876542 111 1111 111122221 334555565443 58889988764
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.46 Score=37.55 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=68.9
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCC-CceeEEEE--cC-CCCEEEEE-eCCCcEEEEecCCceeeeeeeec---
Q psy4653 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHS-DYVRCVAV--HP-TQPFLLTS-SDDMLIKLWNWEKAWACQQVFEG--- 140 (229)
Q Consensus 69 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~v~~--~~-~~~~~~s~-~~d~~v~lwd~~~~~~~~~~~~~--- 140 (229)
+..++.++.||.|..+|.++++....++... ..+....- .+ ++..++.. ..||.|..++..++......-..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 3478899999999999999999988876541 11111100 01 22233333 57999999998765322111000
Q ss_pred ceeeEEE---EEE-cC---CCCCEEEEEECCCcEEEEeCCCCCceEEEec
Q psy4653 141 HTHYVMQ---IVI-NP---KDNNTFASASLDRTVKVWQLGSASPNFTLEG 183 (229)
Q Consensus 141 ~~~~v~~---~~~-~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 183 (229)
...+... ..+ .+ ..+..+.+|+.++++...|+++++.++++..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 0111110 001 00 0345788899999999999999999888854
No 333
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.80 E-value=2.9 Score=32.95 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc--eEEEec---cCCCceeEEEEcCC---CC-EEEEEeCC-----CcEE
Q psy4653 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFE---AHSDYVRCVAVHPT---QP-FLLTSSDD-----MLIK 124 (229)
Q Consensus 59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~---~h~~~i~~v~~~~~---~~-~~~s~~~d-----~~v~ 124 (229)
.-..+.|.|+|+++++ ..++.|.+++ .++ .+..+. ........|+|+|+ +. ++++-... ..|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4678999999986655 5669999988 333 222221 12346789999998 44 44443332 5788
Q ss_pred EEecCCce-----eeeeeee---cceeeEEEEEEcCCCCCEEEEEE
Q psy4653 125 LWNWEKAW-----ACQQVFE---GHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 125 lwd~~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
.++..... .....+. +..+....+.+.| ++.++++-+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 88775321 1111122 1112235788888 567777643
No 334
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.17 E-value=5 Score=30.55 Aligned_cols=184 Identities=11% Similarity=0.018 Sum_probs=86.5
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 96 (229)
+|..++...... ++. . ||.|..|-....-.+..-......|..+.... ...+.-. ||.+..|-.+....+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 455555543332 222 3 78888887654322111001122455554443 2333334 8888888654322211111
Q ss_pred cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176 (229)
Q Consensus 97 ~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 176 (229)
.....|..++.-.....++ . |+.|..|-.....++. +...-...|..++.-. ...++- .|+.+..|=.....
T Consensus 138 ~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~--~hs~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGI--FHSLAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp GGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEEE--ETTEEEEEECCTTS
T ss_pred cCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecC--CEEEEE--ECCeEEEEECCCCC
Confidence 1223466665544333333 3 6888888754322211 1111123466666542 334444 59999999654321
Q ss_pred ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653 177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219 (229)
Q Consensus 177 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 219 (229)
.+-.-......+..++. .....+.++ ||.|..|-....
T Consensus 210 qlg~p~~~~~~v~~i~~--G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 210 QTTVPTEALSGVSAIAS--GEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp TTCCCGGGGSSCCEEEE--CSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCcccCCCceEEEc--CCCEEEEEE---CCEEEEecCCCC
Confidence 11100011123555554 333323333 999999976543
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.12 E-value=5.9 Score=31.31 Aligned_cols=143 Identities=12% Similarity=0.093 Sum_probs=79.0
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE------EecCcCeEEEEEcCC---CCEEEEE---eCCCeEEE
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPR---KNWIVTG---SDDMQVCV 83 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~~~~---~~~l~sg---~~d~~i~i 83 (229)
..-..++|.|++..+++--..|.|++++..+++..... ...+.....+.++|+ +..|... ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 35678999999985554444899999987766542211 112345789999995 3444332 23445555
Q ss_pred EECCCc----------ceE-EEec-cCCCceeEEEEcCCCCEEEEEeC-------------CCcEEEEecCCcee-----
Q psy4653 84 FNYNTL----------ERF-HSFE-AHSDYVRCVAVHPTQPFLLTSSD-------------DMLIKLWNWEKAWA----- 133 (229)
Q Consensus 84 wd~~~~----------~~~-~~~~-~h~~~i~~v~~~~~~~~~~s~~~-------------d~~v~lwd~~~~~~----- 133 (229)
|.+... +.+ ..+. .....-..|.|.|++.++++.+. -++|.-.+.+..-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 554431 111 1221 11123457999999987777543 24555555432100
Q ss_pred -eeeee-ecceeeEEEEEEcCCCCCEEEE
Q psy4653 134 -CQQVF-EGHTHYVMQIVINPKDNNTFAS 160 (229)
Q Consensus 134 -~~~~~-~~~~~~v~~~~~~~~~~~~l~s 160 (229)
-..++ .+|.. ...++|+| ++.++++
T Consensus 192 ~~~~i~a~G~RN-p~Gla~dp-~G~L~~~ 218 (347)
T 3das_A 192 PGSPVYSYGHRN-VQGLAWDD-KQRLFAS 218 (347)
T ss_dssp TTCCEEEBCCSB-CCEEEECT-TCCEEEE
T ss_pred CCCeEEeeCCCC-cceEEECC-CCCEEEE
Confidence 01122 24432 35678888 5666654
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.27 E-value=6.9 Score=30.91 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=61.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEe----ccCCCceeEEEEcCC----CCEEEEE--eCCCcEEE
Q psy4653 58 LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER--FHSF----EAHSDYVRCVAVHPT----QPFLLTS--SDDMLIKL 125 (229)
Q Consensus 58 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~----~~h~~~i~~v~~~~~----~~~~~s~--~~d~~v~l 125 (229)
..-..+.|.|+|+++++--..|.|.+++.+.++. +..+ .........|+++|+ +.++++- ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4568999999999887765589999988665443 2222 123456789999995 4444432 24556666
Q ss_pred EecCCce-------eeeeeee----cceeeEEEEEEcCCCCCEEEEEE
Q psy4653 126 WNWEKAW-------ACQQVFE----GHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 126 wd~~~~~-------~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
|.+.... ....++. ...+....+.|.| ++.++++-+
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G 158 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG 158 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence 6654310 1111221 1122345678887 677777654
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=89.20 E-value=6.1 Score=30.20 Aligned_cols=173 Identities=9% Similarity=0.031 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCcceEEE--eccCCCce
Q psy4653 38 HVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSD----DM-------QVCVFNYNTLERFHS--FEAHSDYV 102 (229)
Q Consensus 38 ~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~----d~-------~i~iwd~~~~~~~~~--~~~h~~~i 102 (229)
.+..||..+.+-.. .... ...........++..++.|+. ++ .+..+|+.+.+.... +......-
T Consensus 25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 47889998876544 1211 111222233456777777773 12 166778776553221 11111111
Q ss_pred eEEEEcCCCCEEEEEeCC-------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECC------CcEE
Q psy4653 103 RCVAVHPTQPFLLTSSDD-------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLD------RTVK 168 (229)
Q Consensus 103 ~~v~~~~~~~~~~s~~~d-------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~ 168 (229)
.++.+ ++.+++.|+.+ ..+.+||+... +.....+......-..+.. ++.+++.|+.+ ..+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEE
Confidence 22222 45666666643 24777887643 2211111111111111222 45677777642 3578
Q ss_pred EEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653 169 VWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT 220 (229)
Q Consensus 169 ~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 220 (229)
+||..+.+ -..+... ...-.+.... ++.+++.|+.+ ..+.+||..+.+
T Consensus 179 ~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 179 IYNPKKGD-WKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEcCCCCE-EEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 88886542 1111111 1111122221 23455555532 357788987764
No 338
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.09 E-value=7.2 Score=29.64 Aligned_cols=183 Identities=16% Similarity=0.062 Sum_probs=91.7
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 96 (229)
+|..++..... .++-. ||.|..|-......+..-......|..+.....- .++. . ||.+..|-.+....+..-.
T Consensus 25 ~i~~ia~G~~h--~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE--EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe--EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56666665433 23334 9999999876532222111112245555554322 3333 4 8999999765422211101
Q ss_pred cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176 (229)
Q Consensus 97 ~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 176 (229)
.-...|..++.-.....++ . |+.|..|-.....++. +.......|..++.-. ...++ -. |+.+..|-.....
T Consensus 99 ~~~~~v~~ia~G~~hs~al--~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~--~~~~~-l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 99 EARSGVDAIAAGAWASYAL--K-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGV--YTALA-VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGSSSEEEEEEETTEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEE-EE-TTEEEEEECCTTS
T ss_pred ccCCCeEEEECcCCEEEEE--e-CCeEEEecCCCCCcCC-CCccCCCCeEEEEccc--CEEEE-EE-CCEEEEecCCCCC
Confidence 1123566666655433333 4 8999999764432211 1111223466666542 22333 23 7899999654322
Q ss_pred ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653 177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218 (229)
Q Consensus 177 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 218 (229)
.+..-..-...+..++. .... .++- .||.|..|-...
T Consensus 171 qlg~p~~~~~~v~~i~~--G~~h-s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAG--GIFH-SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp TTSCCGGGGSSEEEEEE--CSSE-EEEE--ETTEEEEEECCT
T ss_pred CCCCceecCCCeEEEEe--cCCE-EEEE--ECCeEEEEECCC
Confidence 11100011234666654 3332 3333 599999997654
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.98 E-value=15 Score=31.98 Aligned_cols=148 Identities=8% Similarity=-0.016 Sum_probs=76.8
Q ss_pred CCCeEEEEEec------CeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEe-
Q psy4653 26 TEPWMLASLYN------GHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSF- 95 (229)
Q Consensus 26 ~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~- 95 (229)
++..++.|+.+ +.+.+||..+.+-...-... ...-.++....++++++.|+.++ .+.+||+.+.+....-
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 66677777643 35778888875432221000 11122333334788888887655 6888998876543211
Q ss_pred ----ccCCCceeEEEEcCC-CCEEEEEeC--C-----CcEEEEecCCce-------eeeeeee-cceeeEEEEEEcCCCC
Q psy4653 96 ----EAHSDYVRCVAVHPT-QPFLLTSSD--D-----MLIKLWNWEKAW-------ACQQVFE-GHTHYVMQIVINPKDN 155 (229)
Q Consensus 96 ----~~h~~~i~~v~~~~~-~~~~~s~~~--d-----~~v~lwd~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~ 155 (229)
......-.++.+... +.+++.|+. + ..+.+||+.... ....... .....-..+.+. ++
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~ 608 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PR 608 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CC
Confidence 111122234566655 566666665 2 458888986653 1111100 000111122222 25
Q ss_pred CEEEEEECC--------CcEEEEeCCCC
Q psy4653 156 NTFASASLD--------RTVKVWQLGSA 175 (229)
Q Consensus 156 ~~l~s~~~d--------~~i~~wd~~~~ 175 (229)
.+++.|+.+ ..+.+||..+.
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 677777743 46888888754
No 340
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=86.51 E-value=11 Score=29.93 Aligned_cols=154 Identities=11% Similarity=0.182 Sum_probs=84.1
Q ss_pred ceEEEEEcc--CCC-eEEEEE-e--cCeEEEEEcCCC-CeEE---EEEecC-cCeEEEEEcCCCCEEEEEeC---C----
Q psy4653 17 RVKCCDLHP--TEP-WMLASL-Y--NGHVHVWNHETN-QNVK---SFEVCD-LPVRAAKFVPRKNWIVTGSD---D---- 78 (229)
Q Consensus 17 ~v~~~~~~p--~~~-~l~~~~-~--dg~v~~wd~~~~-~~~~---~~~~~~-~~v~~~~~~~~~~~l~sg~~---d---- 78 (229)
.-..+++.+ ++. .|++.. . +.+|.+|++... .... .+.... ...+.+.+.++|.+.++... |
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 345556555 343 455543 2 467888877653 2222 222111 24678888999987776541 1
Q ss_pred --------CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEE-eCCCcEEEEecCCcee--eeeeeecceeeEEE
Q psy4653 79 --------MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWA--CQQVFEGHTHYVMQ 147 (229)
Q Consensus 79 --------~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~~~~--~~~~~~~~~~~v~~ 147 (229)
..=.+|.+..++ +..+...-..-+.++|+|+++.+..+ +..+.|..|++..... ..+.+. ..+..-.
T Consensus 193 ~~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDG 270 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDN 270 (355)
T ss_dssp HHHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEE
T ss_pred cchhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCce
Confidence 122344333332 22222223456899999999876544 5678999999864222 123342 1334556
Q ss_pred EEEcCCCCCEEEEEECC-CcEEEEeC
Q psy4653 148 IVINPKDNNTFASASLD-RTVKVWQL 172 (229)
Q Consensus 148 ~~~~~~~~~~l~s~~~d-~~i~~wd~ 172 (229)
+.+.+.++.+.+++..+ +.|..|+.
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEEeCCCCcEEEEecCCceEEEEECC
Confidence 67765236777766645 34444444
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.08 E-value=6.8 Score=35.51 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=29.8
Q ss_pred eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 188 v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
+.++.. .++..+++|-+.|+++|+|++.+++|+.+.+
T Consensus 238 ~~~~~~--~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEE--ETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEee--cCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 444443 3456699999999999999999999998864
No 342
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=85.91 E-value=11 Score=29.60 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEec---cCCCceeEEEEcCC----CCEEEEEeC---C----CcE
Q psy4653 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-RFHSFE---AHSDYVRCVAVHPT----QPFLLTSSD---D----MLI 123 (229)
Q Consensus 59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~---~h~~~i~~v~~~~~----~~~~~s~~~---d----~~v 123 (229)
.-..+.|.|+|+++++ ..+|.|.+++. .++ .+..+. ........|+++|+ +.++++-+. + ..|
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4678999999985555 56699998874 333 222221 12346789999997 444444332 3 567
Q ss_pred EEEecCCce----eeeee---ee-cceeeEEEEEEcCCCCCEEEEEE
Q psy4653 124 KLWNWEKAW----ACQQV---FE-GHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 124 ~lwd~~~~~----~~~~~---~~-~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
..++..... ....+ +. +..+....+.|.| ++.++++-+
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 777765430 01111 11 1112235678888 677777644
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=83.87 E-value=13 Score=28.75 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=45.7
Q ss_pred CCCeEEEEEe-cCeEEEEEcCC--CCeEEEEEec--CcCeEEEEEcCCCCEEEEEeC-C---------CeEEEEECCCcc
Q psy4653 26 TEPWMLASLY-NGHVHVWNHET--NQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSD-D---------MQVCVFNYNTLE 90 (229)
Q Consensus 26 ~~~~l~~~~~-dg~v~~wd~~~--~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~-d---------~~i~iwd~~~~~ 90 (229)
++.+++.|+. ...+.++|..+ .+-...-... ...-.++... ++++++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 6666677764 45788899874 3222111101 1111122222 4666666665 2 357888888765
Q ss_pred eEEEeccC-CCceeEEEEcCCCCEEEEEeCC
Q psy4653 91 RFHSFEAH-SDYVRCVAVHPTQPFLLTSSDD 120 (229)
Q Consensus 91 ~~~~~~~h-~~~i~~v~~~~~~~~~~s~~~d 120 (229)
....-... ..+...-+...++.+++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 33211111 2222221222556777777754
No 344
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=83.47 E-value=2.5 Score=36.83 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=25.9
Q ss_pred cCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 199 KPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
..+|++-+.|+++|+||+++++++.+.+-
T Consensus 231 ~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 231 ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45999999999999999999999988653
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.24 E-value=18 Score=29.67 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=59.6
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEecc------CCCceeEEEEcCC----CCEEEEEeC------
Q psy4653 58 LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER--FHSFEA------HSDYVRCVAVHPT----QPFLLTSSD------ 119 (229)
Q Consensus 58 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~------h~~~i~~v~~~~~----~~~~~s~~~------ 119 (229)
..-..+.|.|+|+++++-...+.|.+++..+++. +..+.. .......|+|+|+ +.++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567999999999887755445788887654432 222221 2456779999995 444444332
Q ss_pred ------CCcEEEEecCCc----eeeeeeee----cceeeEEEEEEcCCCCCEEEEEE
Q psy4653 120 ------DMLIKLWNWEKA----WACQQVFE----GHTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 120 ------d~~v~lwd~~~~----~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
...|.-++.... .....++. ...+....+.|.| ++.++++-+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence 234555554321 11112221 1123467888988 677777654
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.15 E-value=23 Score=30.88 Aligned_cols=190 Identities=9% Similarity=0.129 Sum_probs=100.3
Q ss_pred CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653 16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95 (229)
Q Consensus 16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 95 (229)
..|.++.-..++ .|..|+.+ -+..+|..+.+...........|.++.. .++ .|-.|+.+ -+..+|.++.+. ..+
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TSF 136 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EEE
T ss_pred ceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EEe
Confidence 468888777666 45666654 4778998875432211111224666644 344 45555555 577888776543 222
Q ss_pred c-----cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec----ceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653 96 E-----AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG----HTHYVMQIVINPKDNNTFASASLDRT 166 (229)
Q Consensus 96 ~-----~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~ 166 (229)
. .....|.++...+++.+.+ ++.. -+..++............. ....|.++...+ ++..|..|.. +-
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~G 212 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GY 212 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CC
Confidence 1 1234688888888777655 4443 5777886543211111111 112366676654 3444444543 45
Q ss_pred EEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653 167 VKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220 (229)
Q Consensus 167 i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 220 (229)
+..+|..+.+.. .+.. ....|.++.. ..++. |..|+. +-+.+++..+++
T Consensus 213 l~~~~~~~~~~~-~~~~l~~~~i~~i~~--d~~g~-lWigT~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 213 LFQYFPSTGQIK-QTEAFHNNSIKSLAL--DGNGD-LLAGTD-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEEETTTTEEE-EEEEEEEEEEEEEEE--CTTCC-EEEEET-TEEEEECCTTSC
T ss_pred CeEEcCCCCeEE-eccCCCCCeEEEEEE--cCCCC-EEEEeC-CceeEEecCCCc
Confidence 788887654321 1111 1123555543 33443 445554 457788876654
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.81 E-value=19 Score=30.65 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEECCCcce-------------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEE
Q psy4653 59 PVRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLER-------------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124 (229)
Q Consensus 59 ~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~-------------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~ 124 (229)
.-..+..+|+|+++++++ .+.++.++|++.... ....+.- -.-...+|.++|.-..|---|.+|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEE
Confidence 456788899999876654 567899999874211 1112211 2235789999995555666899999
Q ss_pred EEecCC
Q psy4653 125 LWNWEK 130 (229)
Q Consensus 125 lwd~~~ 130 (229)
-|+++.
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999864
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.72 E-value=2.8 Score=37.94 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=33.5
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE 54 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 54 (229)
.+.++...++..++++-+.|+++++|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888899999999999999999999999877754
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.39 E-value=25 Score=28.92 Aligned_cols=103 Identities=10% Similarity=0.069 Sum_probs=58.6
Q ss_pred eEEEEEccCCC-eEEEEEecCeEEEEEcCCCC---eEEEE----Ee-----cCcCeEEEEEcCC----CCEEEEEeC--C
Q psy4653 18 VKCCDLHPTEP-WMLASLYNGHVHVWNHETNQ---NVKSF----EV-----CDLPVRAAKFVPR----KNWIVTGSD--D 78 (229)
Q Consensus 18 v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~---~~~~~----~~-----~~~~v~~~~~~~~----~~~l~sg~~--d 78 (229)
=..++|.|++. .++++...|.|++++..... .+..+ .. .+.....|+|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 46889999996 67788889999999754321 11111 10 1345788999986 333333221 1
Q ss_pred ----------CeEEEEECCC----------cceEEEec--cCCCceeEEEEcCCCCEEEEEeCC
Q psy4653 79 ----------MQVCVFNYNT----------LERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDD 120 (229)
Q Consensus 79 ----------~~i~iwd~~~----------~~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~d 120 (229)
..|.-|.+.. .+.+..+. .....-..|+|.|++.++++.+..
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1333354431 12222222 112235789999999887766553
No 350
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.83 E-value=3 Score=38.54 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.7
Q ss_pred CCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653 197 GDKPYLISGADDRLVKIWDYQNKTCVQTLE 226 (229)
Q Consensus 197 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 226 (229)
.+..+++|-+.|+++|+||+.+++|+.+.+
T Consensus 247 ~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 247 STYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred CCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455699999999999999999999999865
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.83 E-value=2.5 Score=39.07 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=32.9
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE 54 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 54 (229)
.+.++...++..++++-+.|+++++||+.+++++....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45666777888999999999999999999999887764
No 352
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=74.82 E-value=28 Score=27.19 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcc--eEEEe----ccCCCceeEEEEcCC----CCEEEEEeC-------C
Q psy4653 59 PVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLE--RFHSF----EAHSDYVRCVAVHPT----QPFLLTSSD-------D 120 (229)
Q Consensus 59 ~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~--~~~~~----~~h~~~i~~v~~~~~----~~~~~s~~~-------d 120 (229)
.-..+.|.|+|+ +++ +...|.|.+++.+... .+..+ .........|+++|+ +.++++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 554 4567899998854221 11111 112345689999995 444444332 2
Q ss_pred CcEEEEecCCc----eeeeeeeec------ceeeEEEEEEcCCCCCEEEEEE
Q psy4653 121 MLIKLWNWEKA----WACQQVFEG------HTHYVMQIVINPKDNNTFASAS 162 (229)
Q Consensus 121 ~~v~lwd~~~~----~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~ 162 (229)
..|..+++... .....++.. ..+....+.|.| ++.++++-+
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 148 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALG 148 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEEC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEEC
Confidence 35666665422 111112211 112234688888 566666644
No 353
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=72.71 E-value=7.2 Score=34.09 Aligned_cols=37 Identities=14% Similarity=0.475 Sum_probs=29.6
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV 55 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~ 55 (229)
.|.|+.+ +..++++-+.|.++++||+.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555444 477999999999999999999998877654
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=70.51 E-value=25 Score=29.95 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=38.1
Q ss_pred EEEEEcCCCCEEEEEeCC------------CeEEEEECCCcceEEEeccC-CCceeEEEEcCCCCEEEEE
Q psy4653 61 RAAKFVPRKNWIVTGSDD------------MQVCVFNYNTLERFHSFEAH-SDYVRCVAVHPTQPFLLTS 117 (229)
Q Consensus 61 ~~~~~~~~~~~l~sg~~d------------~~i~iwd~~~~~~~~~~~~h-~~~i~~v~~~~~~~~~~s~ 117 (229)
--|.|+|.|+++++-..+ ..+.+.+..+++..+.+.++ ..+++.++|+|+++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 568899999966654322 23445566666655555444 3578999999998877655
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.54 E-value=36 Score=29.07 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=39.4
Q ss_pred eEEEEEccCCCeEEEEEec------------CeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEE
Q psy4653 18 VKCCDLHPTEPWMLASLYN------------GHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTG 75 (229)
Q Consensus 18 v~~~~~~p~~~~l~~~~~d------------g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg 75 (229)
--.|.|+|.|.+++..-.+ +.+...+..+++..+.+... ..+++.++|+|+++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678899999855554322 24555666777776665543 3468999999998877654
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.47 E-value=62 Score=27.55 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=41.7
Q ss_pred ceEEEEEccCCCeEEEEEe------------cCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEE
Q psy4653 17 RVKCCDLHPTEPWMLASLY------------NGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTG 75 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~------------dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg 75 (229)
.-..|.|.++|.+.+++-. .+.|...+..+++....+..- ..+.+.+.|+|+++.|.+.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4567899999987775421 226777777778776655432 2458999999999977665
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=55.91 E-value=84 Score=25.76 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc---ceEEEec---------cCCCceeEEEEcCC----CCEEEEEeC--
Q psy4653 59 PVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL---ERFHSFE---------AHSDYVRCVAVHPT----QPFLLTSSD-- 119 (229)
Q Consensus 59 ~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~---~~~~~~~---------~h~~~i~~v~~~~~----~~~~~s~~~-- 119 (229)
.-..|.|.|++. .|+++...|.|++++.+.. ..+..+. ..+.....|+|+|+ +.++++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999985 3445567899999975422 1222111 11456788999996 444443322
Q ss_pred C----------CcEEEEecCCc----------eeeeeee-ecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653 120 D----------MLIKLWNWEKA----------WACQQVF-EGHTHYVMQIVINPKDNNTFASASLD 164 (229)
Q Consensus 120 d----------~~v~lwd~~~~----------~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d 164 (229)
+ ..|.-|.+... ..+.... ....+....+.|.| ++.++++-+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCC
Confidence 1 13444555321 1111111 11123456888998 67777766543
No 358
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=55.42 E-value=63 Score=27.63 Aligned_cols=71 Identities=8% Similarity=0.121 Sum_probs=46.8
Q ss_pred eEEEEcCCCCEEE-EEeCCCcEEEEecCCcee--------eeeeee---cceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653 103 RCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWA--------CQQVFE---GHTHYVMQIVINPKDNNTFASASLDRTVKVW 170 (229)
Q Consensus 103 ~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~--------~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 170 (229)
..+.++|+|++++ ++..+.++.++|++.... ...... .-........|.+ ++....|--.|..|.-|
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceEEEE
Confidence 4789999999876 555688999999874211 011110 1122345677877 56566666799999999
Q ss_pred eCCC
Q psy4653 171 QLGS 174 (229)
Q Consensus 171 d~~~ 174 (229)
++..
T Consensus 405 ni~~ 408 (638)
T 3sbq_A 405 NMEE 408 (638)
T ss_dssp EHHH
T ss_pred eccH
Confidence 9854
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=54.91 E-value=73 Score=24.74 Aligned_cols=157 Identities=12% Similarity=0.101 Sum_probs=90.1
Q ss_pred CCceEEE-EEcc--CCCeEEEEEecCeEEEEEcCCCCe-----EEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 15 SDRVKCC-DLHP--TEPWMLASLYNGHVHVWNHETNQN-----VKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 15 ~~~v~~~-~~~p--~~~~l~~~~~dg~v~~wd~~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
..+|.++ ...+ +.+.++..+..|.++.-.+..-.. +..+.. ..+.+..+........|+..+..|.+..+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 3456554 4442 578899999999999988654221 111111 234566666665667788888999877776
Q ss_pred CC--C---c------ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee------eee--eecceeeEE
Q psy4653 86 YN--T---L------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC------QQV--FEGHTHYVM 146 (229)
Q Consensus 86 ~~--~---~------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~------~~~--~~~~~~~v~ 146 (229)
.. . . .....+. ..+.|.++...+++..++..+..|.++.-.+.+.... ... +....+.+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 54 2 1 1111222 2456777766666778999999999998876542211 111 111122333
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653 147 QIVINPKDNNTFASASLDRTVKVWQLG 173 (229)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~ 173 (229)
.+.... +...++..+.+|.+.-+...
T Consensus 253 ~~~~~~-~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 253 GALIVD-DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEC-TTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEeC-CCccEEEEcCCCeEEEEehh
Confidence 333322 23455556777777777653
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=50.22 E-value=90 Score=24.44 Aligned_cols=152 Identities=10% Similarity=-0.018 Sum_probs=71.4
Q ss_pred CceEEEEEcc-CCCeEEEEEecC----eEEEEEcCCCCeEEEEEe------c--------CcCeEEEEEcCC--CCEEEE
Q psy4653 16 DRVKCCDLHP-TEPWMLASLYNG----HVHVWNHETNQNVKSFEV------C--------DLPVRAAKFVPR--KNWIVT 74 (229)
Q Consensus 16 ~~v~~~~~~p-~~~~l~~~~~dg----~v~~wd~~~~~~~~~~~~------~--------~~~v~~~~~~~~--~~~l~s 74 (229)
..|.++.+.| +...+.+++..| .|... ...++.=..+.. . ...+.++.+.|. .+.|..
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 5799999999 344566666555 34332 222322111110 0 013667888872 455555
Q ss_pred EeCCCeEEEEECCCcceEEEecc-------------------CCCceeEEEEcCC-CCEEEEEeCCCcEEEEec-CCcee
Q psy4653 75 GSDDMQVCVFNYNTLERFHSFEA-------------------HSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNW-EKAWA 133 (229)
Q Consensus 75 g~~d~~i~iwd~~~~~~~~~~~~-------------------h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~-~~~~~ 133 (229)
+...+.|...+- .++.-..+.. ....+.+|.++|. ...+..+..++.|...+= ...+.
T Consensus 134 g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~ 212 (394)
T 3b7f_A 134 GTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWK 212 (394)
T ss_dssp EEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCE
T ss_pred EecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCce
Confidence 555555444322 2222122110 1235789999984 334444443444433321 11111
Q ss_pred eeee-eec-c--------eeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653 134 CQQV-FEG-H--------THYVMQIVINPKDNNTFASASLDRTVKVW 170 (229)
Q Consensus 134 ~~~~-~~~-~--------~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 170 (229)
.... ... + ...+..+.++|.++..+..+...+ |...
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 1100 000 0 123778888886556666666544 4433
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=49.42 E-value=91 Score=26.57 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCEEEEEeC------------CCeEEEEECCCcceEEEeccC-CCceeEEEEcCCCCEEEEE
Q psy4653 60 VRAAKFVPRKNWIVTGSD------------DMQVCVFNYNTLERFHSFEAH-SDYVRCVAVHPTQPFLLTS 117 (229)
Q Consensus 60 v~~~~~~~~~~~l~sg~~------------d~~i~iwd~~~~~~~~~~~~h-~~~i~~v~~~~~~~~~~s~ 117 (229)
-..+.|.++|++.++-.. ...+..++..+++....+... ...++.++|+|+++.|+.+
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 456889999987663221 114555566666654444433 3568999999999877665
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=46.32 E-value=98 Score=23.73 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=70.5
Q ss_pred CceEEEEEcc---CCCeEEEEEecCeEEEEEcCCCCe-----EEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653 16 DRVKCCDLHP---TEPWMLASLYNGHVHVWNHETNQN-----VKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86 (229)
Q Consensus 16 ~~v~~~~~~p---~~~~l~~~~~dg~v~~wd~~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~ 86 (229)
+.|.++..-+ +.+.++..+..|.++.-.+..-.. +..+.. ..+.+..+....++..++..+.+|....+..
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~ 179 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNS 179 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEH
Confidence 4555553332 456788889999999988743211 111111 2345666666655667888899998888865
Q ss_pred CC---------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy4653 87 NT---------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130 (229)
Q Consensus 87 ~~---------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~ 130 (229)
+. +.....+.. .+.|..+..-+++..+++.+..|..+..++.+
T Consensus 180 ~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 180 RDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp GGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred HHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 32 112222332 34566665555566788888899999888754
No 363
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=46.00 E-value=1.5e+02 Score=25.70 Aligned_cols=193 Identities=9% Similarity=0.101 Sum_probs=102.2
Q ss_pred ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653 17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96 (229)
Q Consensus 17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 96 (229)
.|.++...+++..|..|+. +-+..+|..+++...........|.++....++++.+ |+.+ -+.+++.++.+.. .+.
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~-~~~ 267 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQ-HII 267 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCE-EEC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEE-EEE
Confidence 4888888877776666664 4688899887654322222234578888887776554 4444 4778887654322 221
Q ss_pred --------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee----ecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653 97 --------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF----EGHTHYVMQIVINPKDNNTFASASLD 164 (229)
Q Consensus 97 --------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d 164 (229)
-....|.++...+++.+ ..|+..| +.+............. ......|.++.... ++. |..|..+
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~-lWiGt~~ 343 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGF-YWFGGAN 343 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCC-EEEEETT
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCC-EEEeeCC
Confidence 12345888888877764 4454555 5544332111100000 00123466776654 444 4445555
Q ss_pred CcEEEEeCCCCC--ceEEEec-------CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653 165 RTVKVWQLGSAS--PNFTLEG-------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222 (229)
Q Consensus 165 ~~i~~wd~~~~~--~~~~~~~-------h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 222 (229)
| +..++..++. ....+.. ....|.++.- ..++. |..|+ ++-+..||.++++..
T Consensus 344 G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~-lWigt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 344 G-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYE--DKEQQ-LWIAT-DGSINRYDYATRQFI 405 (758)
T ss_dssp E-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEE--CTTSC-EEEEE-TTEEEEEETTTTEEE
T ss_pred c-ceeecccccccceeEEeccCCcCCCCCCCceEEEEE--CCCCC-EEEEe-CCcHhhcCcCCCcEE
Confidence 4 6666654421 1111110 0123555543 33444 44455 457889998877653
No 364
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=39.36 E-value=1.2e+02 Score=22.96 Aligned_cols=189 Identities=6% Similarity=-0.057 Sum_probs=0.0
Q ss_pred EEEEccCCCeEEEEE----ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCcceEEE
Q psy4653 20 CCDLHPTEPWMLASL----YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQVCVFNYNTLERFHS 94 (229)
Q Consensus 20 ~~~~~p~~~~l~~~~----~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~ 94 (229)
+..|+|++..++-.. ....|..-++......+...... ..+++.++.|.=.+. ..+|...+++.+.....
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Q ss_pred eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE-EECCCcEEEEeCC
Q psy4653 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS-ASLDRTVKVWQLG 173 (229)
Q Consensus 95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~~wd~~ 173 (229)
+.+.. ...++|++..|+-......-+|+.+.-...-..++..... ..++|....++.+ ......|..-++.
T Consensus 183 ~~~~~----~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 183 YDCNC----YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI----EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp ECSCE----EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE----EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred eCCCc----cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc----ceEEECCCEEEEEECCCCcEEEEEECC
Q ss_pred CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227 (229)
Q Consensus 174 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 227 (229)
.........+. +..+... +..+..+-...+.|.--++.-...+.-+++
T Consensus 255 G~~r~~l~~~~---~~~i~i~---~d~Iy~td~~~~~i~~~~~dGs~~~~l~~~ 302 (302)
T 3s25_A 255 GTGFKELAKGE---FCNINVT---SQYVYFTDFVSNKEYCTSTQNPDTIKALQP 302 (302)
T ss_dssp SCCCEEEEESC---EEEEEEC---SSEEEEEETTTCCEEEEESSSCCSCEECCC
T ss_pred CCccEEeeCCc---cceEEEe---CCEEEEEECCCCeEEEEECCCCCceEecCC
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=37.44 E-value=1.5e+02 Score=23.19 Aligned_cols=96 Identities=6% Similarity=-0.042 Sum_probs=46.9
Q ss_pred CeEEEEEecCeEEEEEcCC-CCeEEEE--EecCcCeEEEEEcC--CCCEEEEEeCCC----eEEEEECCCcceEEEec--
Q psy4653 28 PWMLASLYNGHVHVWNHET-NQNVKSF--EVCDLPVRAAKFVP--RKNWIVTGSDDM----QVCVFNYNTLERFHSFE-- 96 (229)
Q Consensus 28 ~~l~~~~~dg~v~~wd~~~-~~~~~~~--~~~~~~v~~~~~~~--~~~~l~sg~~d~----~i~iwd~~~~~~~~~~~-- 96 (229)
..|++|+..| +.+.+... ++.-..+ ......+.++.+.| ++.+.+. +..| .|...+ +.++.-..+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEeC-CCCCCceECCcc
Confidence 3677787766 55555433 2221221 12234689999998 4554444 4444 333322 2222111111
Q ss_pred ----c--------CCCceeEEEEcCC--CCEEEEEeCCCcEEEE
Q psy4653 97 ----A--------HSDYVRCVAVHPT--QPFLLTSSDDMLIKLW 126 (229)
Q Consensus 97 ----~--------h~~~i~~v~~~~~--~~~~~s~~~d~~v~lw 126 (229)
. ....|.++++.|. ...+..++..+.|...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 1 1125778999873 3455555555555444
No 366
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=34.55 E-value=1.4e+02 Score=24.82 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=42.8
Q ss_pred ceEEEEEcc------CCCeEEEEEecCeEEEEEcCCCC--------eEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCe
Q psy4653 17 RVKCCDLHP------TEPWMLASLYNGHVHVWNHETNQ--------NVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQ 80 (229)
Q Consensus 17 ~v~~~~~~p------~~~~l~~~~~dg~v~~wd~~~~~--------~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~ 80 (229)
..++++... ....++.|+.+|.|+---..... .+..+.. ...+|..+.++++...|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 455655542 23567789999987654443211 1222222 2468999999999999999998887
Q ss_pred EEE
Q psy4653 81 VCV 83 (229)
Q Consensus 81 i~i 83 (229)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 367
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=32.82 E-value=95 Score=26.08 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=43.6
Q ss_pred ceEEEEEcc--CCCeEEEEEecCeEEEEEcCCCC----eEEEEEec--CcCeE-EEEEcCCCCEEEEEeCCCeEEE
Q psy4653 17 RVKCCDLHP--TEPWMLASLYNGHVHVWNHETNQ----NVKSFEVC--DLPVR-AAKFVPRKNWIVTGSDDMQVCV 83 (229)
Q Consensus 17 ~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~--~~~v~-~~~~~~~~~~l~sg~~d~~i~i 83 (229)
.+++++... +...++.|+.+|.|+-..+.... ....+... ..+|. .+.++++...|.+++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 455555443 34577889999988776554322 12222222 34674 8999999999999988776666
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=29.09 E-value=2e+02 Score=22.22 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=67.5
Q ss_pred CCceEEEEEccCCCeEEEEEecCeEEEEEcC--C----CCe---EEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHE--T----NQN---VKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~--~----~~~---~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
.+.+..+..-.....++..+..|.+..+... . ++. +..+.. .++.|.++...+++..|+..+..|.++.-
T Consensus 145 ~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt 224 (327)
T 3uc1_A 145 NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRT 224 (327)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEE
Confidence 4566666555556678888888998888777 2 111 111111 23457777777777788899999988877
Q ss_pred ECCCc-------ceEEEec--cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy4653 85 NYNTL-------ERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130 (229)
Q Consensus 85 d~~~~-------~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~ 130 (229)
.+... +-+..++ .-.+.+-.+....+...++..+.+|.+..++..+
T Consensus 225 ~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 225 AIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 65321 2222222 1123344444334444565666677777777644
No 369
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=26.77 E-value=2.9e+02 Score=23.53 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=38.3
Q ss_pred CeEEEEEecCeEEEEEcCCCC----e--EEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653 28 PWMLASLYNGHVHVWNHETNQ----N--VKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVF 84 (229)
Q Consensus 28 ~~l~~~~~dg~v~~wd~~~~~----~--~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iw 84 (229)
..++.|+.+|.|+-.-..... . +..+.. ...+|..+.++++...|..++.++.+++-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 577889999987754433221 1 111211 24578999999999999999888877763
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.87 E-value=2.5e+02 Score=21.60 Aligned_cols=114 Identities=10% Similarity=0.089 Sum_probs=68.4
Q ss_pred CceEEE-EEcc--CCCeEEEEEecCeEEEEEcCCC------CeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653 16 DRVKCC-DLHP--TEPWMLASLYNGHVHVWNHETN------QNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85 (229)
Q Consensus 16 ~~v~~~-~~~p--~~~~l~~~~~dg~v~~wd~~~~------~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd 85 (229)
+.|.++ ...+ ++++++..+..|.++.-.+..- +-+..+.. ..+.+..+........|+..+.+|.+..+.
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~ 171 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFD 171 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 456554 3432 2567888999999999887421 11222221 235566666655666788888999887776
Q ss_pred CCC---------cceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCC
Q psy4653 86 YNT---------LERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEK 130 (229)
Q Consensus 86 ~~~---------~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~ 130 (229)
... +.....+. -.+.|.++...+++. .++..+..|..+.-++..
T Consensus 172 ~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 172 ESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp GGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred HHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 531 11112222 234566665444444 788888888888877754
No 371
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.14 E-value=3.5e+02 Score=23.05 Aligned_cols=160 Identities=8% Similarity=0.096 Sum_probs=83.8
Q ss_pred cCCCceEEEEEccCCC-eEEEEEecCe----------------------------EEEEEcCCCCeEEEEEecC--cC--
Q psy4653 13 ARSDRVKCCDLHPTEP-WMLASLYNGH----------------------------VHVWNHETNQNVKSFEVCD--LP-- 59 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~-~l~~~~~dg~----------------------------v~~wd~~~~~~~~~~~~~~--~~-- 59 (229)
.|..++...+|.-||+ -+++.+.+|+ +.++|-.+|+.+....... ..
T Consensus 176 a~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred cccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 3777899999999885 4555666665 7899999998877654321 00
Q ss_pred -------------eEEEEEcCCCC-EEEEEe---CCCeEEEEECCCcce--EEEeccCC-----------CceeEEEEcC
Q psy4653 60 -------------VRAAKFVPRKN-WIVTGS---DDMQVCVFNYNTLER--FHSFEAHS-----------DYVRCVAVHP 109 (229)
Q Consensus 60 -------------v~~~~~~~~~~-~l~sg~---~d~~i~iwd~~~~~~--~~~~~~h~-----------~~i~~v~~~~ 109 (229)
..++.+.-..+ .++.+. ....+..||...++. ...+.... ......++..
T Consensus 256 ~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred ccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 23344332111 222222 223577788766543 22222210 2344555566
Q ss_pred CCCE-EEEE----eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC-CCEEEEEECCC----cEEEEeCCCCCceE
Q psy4653 110 TQPF-LLTS----SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD-NNTFASASLDR----TVKVWQLGSASPNF 179 (229)
Q Consensus 110 ~~~~-~~s~----~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~----~i~~wd~~~~~~~~ 179 (229)
||+. ++-| ..||++ ||... .+|...+....+.|.. +..++.+..++ -..+.|..+++.++
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st~---------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw 405 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYSTG---------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILW 405 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEECS---------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEE
T ss_pred CCCceEEEeeeEECCCCCE-eeeCC---------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEE
Confidence 6552 2222 334544 55542 2566666556666643 23344443331 34456777776666
Q ss_pred EEe
Q psy4653 180 TLE 182 (229)
Q Consensus 180 ~~~ 182 (229)
...
T Consensus 406 ~~~ 408 (591)
T 2zux_A 406 GVY 408 (591)
T ss_dssp EEC
T ss_pred EcC
Confidence 554
No 372
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=22.60 E-value=2.4e+02 Score=24.46 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=36.8
Q ss_pred CeEEEEEecCeEEE-EEcCCCC-------eEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653 28 PWMLASLYNGHVHV-WNHETNQ-------NVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83 (229)
Q Consensus 28 ~~l~~~~~dg~v~~-wd~~~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~i 83 (229)
..++.|+.+|.|+- ....... .+..+. ....+|..+.++++...|.+++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 46788999998753 2222111 111111 13457899999999999999999987776
No 373
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=21.11 E-value=1.2e+02 Score=20.00 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=25.4
Q ss_pred cCCCceEEEEEccCCCeEEEEEecCeEEEEE
Q psy4653 13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWN 43 (229)
Q Consensus 13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd 43 (229)
.|.++|+|+.|. +=+.-+.+..++.|.+--
T Consensus 27 khe~eVYcf~F~-~i~i~iy~d~~rwvyf~A 56 (132)
T 1s28_A 27 KHEHEVYCFEFK-EVSIRIYQDKFKWVYFLS 56 (132)
T ss_dssp CSTTCCEEEEEG-GGTEEEEECTTSEEEEEE
T ss_pred cccCceEEEEEC-CEEEEEeecCCcEEEEEe
Confidence 488899999999 878888899898888653
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=20.59 E-value=2.7e+02 Score=20.77 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=89.5
Q ss_pred CCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCC------eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653 15 SDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQ------NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87 (229)
Q Consensus 15 ~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~ 87 (229)
.++|.++-... +.+.++..+.+|.++...+..-. ....+. ..+.+..+........|+..+..|.+..+...
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 45666654321 56789999999999998875432 111122 23456666666566688888899987777642
Q ss_pred ---C------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee------eeeecceeeEEEEEEcC
Q psy4653 88 ---T------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ------QVFEGHTHYVMQIVINP 152 (229)
Q Consensus 88 ---~------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~------~~~~~~~~~v~~~~~~~ 152 (229)
. |.....++. .+.|.++...+++..++..+..|.++...+.+..... ..+. ..+.+..+....
T Consensus 146 eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~~~~lv~~~~~~ 223 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-TKDTLVDLIPIK 223 (276)
T ss_dssp GSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-SSSCEEEEEEES
T ss_pred hCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-CCCcEEEEEEeC
Confidence 1 112222332 3556666555666788888999999988875421111 1111 123333333222
Q ss_pred CCCCEEEEEECCCcEEE--EeCC
Q psy4653 153 KDNNTFASASLDRTVKV--WQLG 173 (229)
Q Consensus 153 ~~~~~l~s~~~d~~i~~--wd~~ 173 (229)
++..++..+.+|.+.. ++..
T Consensus 224 -~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 224 -EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp -SEEEEEEEETTSCEEEEEEEGG
T ss_pred -CCCEEEEEcCCCeEEEeeeCHH
Confidence 2345555677777777 7653
No 375
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=20.17 E-value=4.2e+02 Score=22.86 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=37.1
Q ss_pred CeEEEEEecCeEEEE-EcCCCCe-EEEEEe--cCcCeEEEEEcCCC--CEEEEEeCCCeEEE
Q psy4653 28 PWMLASLYNGHVHVW-NHETNQN-VKSFEV--CDLPVRAAKFVPRK--NWIVTGSDDMQVCV 83 (229)
Q Consensus 28 ~~l~~~~~dg~v~~w-d~~~~~~-~~~~~~--~~~~v~~~~~~~~~--~~l~sg~~d~~i~i 83 (229)
..++.|+.+|.|+-. ....... +..... ...+|..+.++++. ..|.+++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 478889999987654 3332211 111111 23578899999987 89999988887666
Done!