RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4653
(229 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 169 bits (430), Expect = 6e-52
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 4/220 (1%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
+R L + V C P + +G + VW+ ET + +++ + PVR
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
++ +GS D + +++ T E + H+ YV VA P L +SS D IK+W+
Sbjct: 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121
Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
E C GHT +V + +P D AS+S D T+K+W L + TL GH
Sbjct: 122 VETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179
Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
VN V + G+K L+S + D +K+WD C+ TL
Sbjct: 180 VNSVAFSPDGEK--LLSSSSDGTIKLWDLSTGKCLGTLRG 217
Score = 153 bits (389), Expect = 7e-46
Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 4/207 (1%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R LT + V P + +S + + VW+ ET + + + V + F P
Sbjct: 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
++ + S D + +++ T + + H+ V VA P LL+SS D IKLW+
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD- 205
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
C GH + V + +P D AS S D T++VW L + TL GH V
Sbjct: 206 LSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWD 215
+ + D L SG+ D ++IWD
Sbjct: 265 TSLAWS--PDGKRLASGSADGTIRIWD 289
Score = 147 bits (372), Expect = 2e-43
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 4/221 (1%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
++ R L + V+ ++ + + + +W+ ET + V++ V + F
Sbjct: 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF 101
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
P + + S D + V++ T + + H+D+V VA P F+ +SS D IKL
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
W+ + C GHT V + +P D S+S D T+K+W L + TL GHE
Sbjct: 162 WD-LRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
GVN V + G L SG++D +++WD + CVQTL
Sbjct: 220 NGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTGECVQTLS 258
Score = 80.8 bits (200), Expect = 3e-18
Identities = 27/120 (22%), Positives = 53/120 (44%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
LT + V P +L+S +G + +W+ T + + + + V + F P
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+ +GS+D + V++ T E + H++ V +A P L + S D I++W+
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 106 bits (264), Expect = 1e-26
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
+ R L S+ V P + S +G + +W+ T + + + PV + F
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206
Query: 66 VPRKNW-IVTGSDDMQVCVFNYNTLERFHS-FEAHSDYVRCVAVHPTQPFLLTSSDDMLI 123
P I +GS D + +++ +T + S HSD V + P L + S D I
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTI 265
Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTL 181
+LW+ + + + GH+ V+ + +P D AS S D TV++W L G + TL
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+GHE V+ + + G + G+DD +++WD + ++TLE
Sbjct: 325 KGHEGPVSSLSFSPDGSL-LVSGGSDDGTIRLWDLRTGKPLKTLEGH 370
Score = 95.2 bits (235), Expect = 1e-22
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 24 HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83
+ +LA L + V + + + + + + F P +++GS D + +
Sbjct: 36 SESGILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKL 91
Query: 84 FNYNTLER-FHSFE-AHSDYVRCVAV-HPTQPFLLT--SSDDMLIKLWNWEKAWACQQVF 138
++ + E+ S E H V +A+ P +L SS D +KLW+ +
Sbjct: 92 WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151
Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD 198
EGH+ V + +P + +SLD T+K+W L + P TL GH V+ + + G
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211
Query: 199 KPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+ SG+ D +++WD +++ SG
Sbjct: 212 L-LIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Score = 94.4 bits (233), Expect = 2e-22
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 15/230 (6%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN-VKSFE-VCDLPVRAAKF 65
L D + P +L+ +G + +W+ + + +KS E + D V
Sbjct: 58 SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117
Query: 66 -VPRKNWIVT--GSDDMQVCVFNYNTL-ERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-D 120
P N I+ S D V +++ +T + + E HS+ V +A P L + S D
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP-NF 179
IKLW+ GHT V + +P AS S D T+++W L +
Sbjct: 178 GTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 180 TLEGHEKG-VNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLES 227
TL GH V+ D L SG+ D +++WD ++ + ++TL
Sbjct: 237 TLSGHSDSVVSSFSP----DGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282
Score = 87.8 bits (216), Expect = 4e-20
Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
L +D V P ++AS +G + +W+ T + ++S + F P
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251
Query: 68 RKNWIVTGSDDMQVCVFNYNTL-ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
+ + +GS D + +++ + + HS V VA P L + S D ++LW
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Query: 127 N-WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
+ +GH V + +P + + S D T+++W L + P TLEGH
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH- 370
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
V V + D + SG+ D V++WD + ++ L+
Sbjct: 371 SNVLSVSF--SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Score = 87.8 bits (216), Expect = 4e-20
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 9/207 (4%)
Query: 20 CCDLHPTEPWMLASLYNGHVHVWNHETNQN-VKSFEVCDLPVRAAKFVPRKNWIVTGSDD 78
P + + +G + +W+ ++ + +++ V + F P + +GS D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 79 MQVCVFNYNTLERFH--SFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQ 135
V +++ T + + + H V ++ P L++ SDD I+LW+ +
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG---K 362
Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
+ H + V D +S S D TV++W L + S L+GH V +D+
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCV 222
G L SG+ D +++WD +
Sbjct: 423 DGK--SLASGSSDNTIRLWDLKTSLKS 447
Score = 55.5 bits (132), Expect = 4e-09
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 8 KRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
L V P +++ +G + +W+ T + +K+ E V + F
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-GHSNVLSVSFS 379
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
P + +GS D V +++ +T + + H+ V + P L + S D I+LW
Sbjct: 380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Query: 127 NWEK 130
+ +
Sbjct: 440 DLKT 443
Score = 27.7 bits (60), Expect = 5.1
Identities = 16/89 (17%), Positives = 33/89 (37%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
LR K V P + + +G V +W+ T +++ + V +
Sbjct: 358 LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS 417
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLER 91
F P + +GS D + +++ T +
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 45.8 bits (109), Expect = 2e-07
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+ + H+ V VA P L + SDD +++W+
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 43.1 bits (102), Expect = 2e-06
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
+ +GHT V + +P D N AS S D TV+VW
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
Score = 41.2 bits (97), Expect = 9e-06
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
TL+GH V V + D L SG+DD V++WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSP--DGNLLASGSDDGTVRVWD 39
Score = 30.8 bits (70), Expect = 0.052
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN 43
+ R L + V P + + +G V VW+
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 30.0 bits (68), Expect = 0.094
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 48 QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85
+ +++ + PV + F P N + +GSDD V V++
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 45.0 bits (107), Expect = 4e-07
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+ E + + H+ V VA P +L + SDD IKLW+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.5 bits (98), Expect = 7e-06
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
+ +GHT V + +P D AS S D T+K+W
Sbjct: 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
Score = 40.4 bits (95), Expect = 2e-05
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
S TL+GH V V + D YL SG+DD +K+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40
Score = 31.9 bits (73), Expect = 0.021
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 46 TNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85
+ + +K+ + PV + F P ++ +GSDD + +++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 28.4 bits (64), Expect = 0.33
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN 43
+ L + V P ++ + +G + +W+
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 43.8 bits (103), Expect = 4e-05
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS--------ASPNFTLEGHEKGVN 189
+GHT ++ + NP + AS S D T++VW++ P L+GH+K ++
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 190 CVD-----YYHGGDKPYLISGADDRLVKIWDYQNK 219
+D YY + S D V IWD +N+
Sbjct: 130 IIDWNPMNYY------IMCSSGFDSFVNIWDIENE 158
Score = 27.6 bits (61), Expect = 6.2
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 114 LLTSSDDMLIKLW-------NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
L + S+D+ I++W + ++ Q + +GH + I NP + S+ D
Sbjct: 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149
Query: 167 VKVWQL 172
V +W +
Sbjct: 150 VNIWDI 155
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 41.0 bits (96), Expect = 3e-04
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 145 VMQIVINPKDNNTFASASLDRTVKVW-------QLGSASPNFTLEGHEKGVNCVDYYHGG 197
++ + NP D +AS D T+ W + P L+GH K V V +H
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS-FHPS 136
Query: 198 DKPYLISGADDRLVKIWDYQNKTCVQTLES 227
L S D +V +WD + V+ ++
Sbjct: 137 AMNVLASAGADMVVNVWDVERGKAVEVIKC 166
Score = 39.5 bits (92), Expect = 8e-04
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 112 PF----LLTSSDDMLIKLWNWEKAWACQQV------FEGHTHYVMQIVINPKDNNTFASA 161
PF L T+S+D I W + Q + +GHT V + +P N ASA
Sbjct: 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144
Query: 162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221
D V VW + ++ H + +++ G L + + D+ + I D ++ T
Sbjct: 145 GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS--LLCTTSKDKKLNIIDPRDGTI 202
Query: 222 VQTLES 227
V ++E+
Sbjct: 203 VSSVEA 208
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 38.1 bits (88), Expect = 0.002
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 29/170 (17%)
Query: 78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV 137
D + AH ++ ++ + + LL S+DD+ I LWN E +
Sbjct: 156 DEIIAAK-----PCRVYANAHPYHINSISFNSDKETLL-SADDLRINLWNLEIIDGSFNI 209
Query: 138 FEGHTHYVMQI--VIN-----PKDNNTFASASLDRTVKVWQLGSAS----PNFTLEGHEK 186
+ H + ++ VI P+ N F +S +K+ L ++ E
Sbjct: 210 VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTID 269
Query: 187 GVNCVDYYHG----------GDKPYLISGADDRLVKIWDYQN-KTCVQTL 225
GV+ VD++ D I D VKIWD K ++T+
Sbjct: 270 GVD-VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI 318
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 37.4 bits (86), Expect = 0.006
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
AS++ + V+VW + + ++ HEK V +D Y D L SG+DD VK+W
Sbjct: 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSID-YSSADPTLLASGSDDGSVKLWSINQ 607
Query: 219 KTCVQTLES 227
+ T+++
Sbjct: 608 GVSIGTIKT 616
Score = 34.3 bits (78), Expect = 0.055
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 98 HSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
H V + P LL S SDD +KLW+ + + + T + V P ++
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---KTKANICCVQFPSESG 630
Query: 157 -TFASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ A S D V + L + P T+ GH K V+ V + D L+S + D +K+W
Sbjct: 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLW 687
Query: 215 D 215
D
Sbjct: 688 D 688
>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate.
Length = 344
Score = 31.7 bits (72), Expect = 0.30
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 26/98 (26%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
+LASL+N +H+ +V S E +L +R AK + VT +V
Sbjct: 142 LLASLHNRSIHI------CHVSSKEEINL-IRLAK---ARGLKVT----CEVSP------ 181
Query: 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
H F + D R + +PFL T D LW
Sbjct: 182 --HHLFLSQDDLPR--GQYEVRPFLPTRED--QEALWE 213
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
+ + + D V V YN++ H+ HSD C+ V + + I
Sbjct: 121 RLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSD---CLVVIDNEALFDICPRPLHID 176
>gnl|CDD|109297 pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosphodiesterase.
Length = 237
Score = 28.6 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDL-HPTEPWMLAS 33
RLD+ K+ S + DL +PT+PW L
Sbjct: 131 QKKRLDLDHKILLLSLLMHAADLSNPTKPWKLHR 164
>gnl|CDD|226638 COG4168, SapB, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 321
Score = 28.2 bits (63), Expect = 3.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 25 PTEPWMLASLYNGHVHVWNH 44
P P ASL+ G V +N
Sbjct: 31 PHAPLQGASLWQGWVFYFNG 50
>gnl|CDD|215209 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 27.4 bits (61), Expect = 6.9
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 4 RLDIKRKLTAR------SDRVKCCDLH 24
R I KL A +DRV CDLH
Sbjct: 92 RESIAAKLVANLITEAGADRVLACDLH 118
>gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of
UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase)
catalyzes the reversible production of UDP-Glucose and
pyrophosphate (PPi) from Glucose-1-phosphate and UTP.
UDP-glucose plays pivotal roles in galactose
utilization, in glycogen synthesis, and in the synthesis
of the carbohydrate moieties of glycolipids,
glycoproteins, and proteoglycans. UGPase is found in
both prokaryotes and eukaryotes. Interestingly, while
the prokaryotic and eukaryotic forms of UGPase catalyze
the same reaction, they share low sequence similarity.
This family consists of mainly eukaryotic
UTP-glucose-1-phosphate uridylyltransferases.
Length = 300
Score = 26.8 bits (60), Expect = 9.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 12/39 (30%)
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQL----GSASPNFT 180
++I++NPK ++D + V QL G+A NF
Sbjct: 239 LEIIVNPK--------TVDGGLNVIQLETAVGAAIKNFD 269
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.447
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,289,609
Number of extensions: 985383
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 38
Length of query: 229
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 135
Effective length of database: 6,768,326
Effective search space: 913724010
Effective search space used: 913724010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)