RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4653
(229 letters)
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 359 bits (922), Expect = e-120
Identities = 135/225 (60%), Positives = 172/225 (76%), Gaps = 1/225 (0%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
++LDIK+ + RSDRVK D HPTEPW+L +LY+G V +WN+ET V+S +V + PVRA
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
KF+ RKNWI+ GSDD ++ VFNYNT E+ FEAH DY+R +AVHPT+P++L+ SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
+KLWNWE WA +Q FEGH H+VM + NPKD +TFAS LDRTVKVW LG ++PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
G E+GVN VDYY DKPY+I+ +DD +KIWDYQ K+CV TLE
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 160 bits (407), Expect = 2e-45
Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 5/221 (2%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R + V+ + W++ + + V+N+ T + V FE +R+ P
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 69 KNWIVTGSDDMQVCVFNYNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLW 126
K ++++GSDD+ V ++N+ +FE H +V CVA +P P S D +K+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
+ ++ + G V + P D +AS D T+K+W + S TLEGH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
V+ ++ P +ISG++D +KIW+ +TL
Sbjct: 229 SNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 124 bits (312), Expect = 9e-33
Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 15/224 (6%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVC-DLPVRAAK 64
+++ V C +P +P AS + V VW+ + + + V
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 65 F--VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
+ +P K +++T SDD+ + +++Y T + E H V HPT P +++ S+D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINP-KDNNTFASASLDRTVKVWQLGSASPNFTL 181
+K+WN + ++ I +P N AS D V LG+ P +L
Sbjct: 252 LKIWNSST-YKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSL 309
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ K V S +++ + + L
Sbjct: 310 DPVGKLVWSGGKNA------AASDIFTAVIRGNE--EVEQDEPL 345
Score = 86.7 bits (215), Expect = 7e-20
Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 25/227 (11%)
Query: 9 RKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
+ L +R C HPT +AS ++ V + ++ S + V +
Sbjct: 264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV----WSG 319
Query: 68 RKNWIVTGSDDMQVCVFNYNTLER-----FHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
KN + + + + + + +A P F+ D
Sbjct: 320 GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEY 379
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+ V P D+N++A +K ++ ++++
Sbjct: 380 VIYT-------ALAWRNKAFGKCQDFVWGP-DSNSYALIDETGQIKYYKNFKEVTSWSVP 431
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
H +D G L+ D V +D+ N T V+ ++
Sbjct: 432 MHS----AIDRLFSG---ALLGVKSDGFVYFFDWDNGTLVRRIDVNA 471
Score = 69.3 bits (170), Expect = 6e-14
Identities = 28/214 (13%), Positives = 59/214 (27%), Gaps = 12/214 (5%)
Query: 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWI 72
V HPT P +++ +G + +WN T + K+ V P RKN+I
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287
Query: 73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW 132
+G D+ V + E S + V + + T+ ++ E
Sbjct: 288 ASGFDNG-FTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346
Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVD 192
+ + + +P + V L
Sbjct: 347 LQTKELGSVDVFPQSLAHSP-NGRFVTVVGDGEYVIYTALA------WRNKAFGKCQDFV 399
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ + + +K + + ++
Sbjct: 400 WGPDSN--SYALIDETGQIKYYKNFKEVTSWSVP 431
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 149 bits (378), Expect = 5e-43
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 13/218 (5%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
+ L D V C L +++ + + VW+ T + +++ V +++
Sbjct: 112 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD- 169
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
N I++GS D + V+N T E H+ H+ VRC+ +H + +++ S D +++W+
Sbjct: 170 -NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI 226
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
E C V GH V + D S + D VKVW + + TL+GH V
Sbjct: 227 ET-GQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ + D +++SG+ D +++WD + C+ TL
Sbjct: 283 YSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Score = 143 bits (363), Expect = 1e-40
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 13/227 (5%)
Query: 1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVH-VWNHETNQNVKSFEVCDLP 59
I L + +V PW A + + W ++ K + D
Sbjct: 62 KCKEEGIDEPLHIKRRKVIKPGFIH-SPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDH 120
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
V N IV+GSDD + V++ T + + H+ V + +++ S
Sbjct: 121 VITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
D +K+WN E C GHT V + ++ K S S D T++VW + +
Sbjct: 178 DRTLKVWNAET-GECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLH 233
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
L GH V CV Y D ++SGA D +VK+WD + +TC+ TL+
Sbjct: 234 VLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Score = 137 bits (346), Expect = 2e-38
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ VWN ET + + + VR + +V+GS D + V++ T + H H
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
VRCV + +++ + D ++K+W+ E C +GHT+ V + D
Sbjct: 239 VAAVRCVQYDGRR--VVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF---DGIHV 292
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
S SLD +++VW + + + TL GH+ + ++ L+SG D VKIWD +
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIKT 348
Query: 219 KTCVQTLE 226
C+QTL+
Sbjct: 349 GQCLQTLQ 356
Score = 125 bits (317), Expect = 4e-34
Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 9/191 (4%)
Query: 36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
+ + + + + V F+ + L+
Sbjct: 55 DNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVL 114
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
+ H D+V + +++ SDD +K+W+ C + GHT V +
Sbjct: 115 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRD--- 169
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
N S S DRT+KVW + TL GH V C+ + ++SG+ D +++WD
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL----HEKRVVSGSRDATLRVWD 225
Query: 216 YQNKTCVQTLE 226
+ C+ L
Sbjct: 226 IETGQCLHVLM 236
Score = 125 bits (317), Expect = 4e-34
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 19/224 (8%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
L + V+C LH + S + + VW+ ET Q + VR ++
Sbjct: 193 HTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-- 247
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+V+G+ D V V++ T H+ + H++ V + +++ S D I++W+
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWD 305
Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---H 184
E C GH + + N S + D TVK+W + + TL+G H
Sbjct: 306 VETG-NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+ V C+ + +K ++I+ +DD VK+WD + ++ L +
Sbjct: 362 QSAVTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 401
Score = 96.6 bits (241), Expect = 2e-23
Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 22/189 (11%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V VW+ ET + + + V + +F +V+GS D + V++ T H+ H
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVINPKDN 155
+ + L++ + D +K+W+ + C Q +G H V + N
Sbjct: 319 QSLTSGMELKDN--ILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNK--- 372
Query: 156 NTFASASLDRTVKVWQLGSASPNFTL-----EGHEKGVNCVDYYHGGDKPYLISGADDR- 209
N ++S D TVK+W L + L G V + + K G+ +
Sbjct: 373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN--TKLVCAVGSRNGT 430
Query: 210 ---LVKIWD 215
+ + D
Sbjct: 431 EETKLLVLD 439
Score = 95.4 bits (238), Expect = 4e-23
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 8/158 (5%)
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
+ W + ++D + V + + W
Sbjct: 47 RYWRIL-AEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRR 105
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+ +V +GH +V+ + N S S D T+KVW + TL GH GV
Sbjct: 106 GEL-KSPKVLKGHDDHVI-TCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 162
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ +ISG+ DR +K+W+ + C+ TL
Sbjct: 163 WSSQMR--DNI--IISGSTDRTLKVWNAETGECIHTLY 196
Score = 50.7 bits (122), Expect = 1e-07
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL---PVRAAK 64
LT +L +L S + V +W+ +T Q +++ + + V +
Sbjct: 313 HTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNTLE-----RFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
F ++T SDD V +++ T E V + T+ S
Sbjct: 370 FNKNF--VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 427
Query: 120 D--MLIKLWNW 128
+ KL
Sbjct: 428 NGTEETKLLVL 438
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 143 bits (364), Expect = 5e-42
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
V + KF P W+ + S D + ++ + + H + VA L+++S
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DD +K+W+ C + +GH++YV NP +N S S D +V++W + +
Sbjct: 85 DDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
TL H V+ V + G ++S + D L +IWD + C++TL
Sbjct: 143 KTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Score = 142 bits (360), Expect = 2e-41
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 2/189 (1%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +K+ + V F P+ N IV+GS D V +++ T + + AH
Sbjct: 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
SD V V + +++SS D L ++W+ + + + V + +P +
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYI 207
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY-YHGGDKPYLISGADDRLVKIWDYQ 217
+A+LD T+K+W T GH+ C+ + +++SG++D LV IW+ Q
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 218 NKTCVQTLE 226
K VQ L+
Sbjct: 268 TKEIVQKLQ 276
Score = 118 bits (298), Expect = 2e-32
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 8/182 (4%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF-EA 97
V +W+ +T + +K+ PV A F + IV+ S D +++ + + + +
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN--PKDN 155
+ V V P ++L ++ D +KLW++ K C + + GH + I N
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGG 249
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISG--ADDRLVKI 213
S S D V +W L + L+GH V + + + S +D+ +K+
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP--TENIIASAALENDKTIKL 307
Query: 214 WD 215
W
Sbjct: 308 WK 309
Score = 118 bits (298), Expect = 3e-32
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 74 TGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA 133
T S V + H+ V V P +L +SS D LIK+W
Sbjct: 2 TQSKPTPV----KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-K 56
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
++ GH + + + D+N SAS D+T+K+W + S TL+GH V C ++
Sbjct: 57 FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ ++SG+ D V+IWD + C++TL
Sbjct: 116 NPQSN--LIVSGSFDESVRIWDVKTGKCLKTLP 146
Score = 93.7 bits (234), Expect = 5e-23
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 10/171 (5%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFV 66
+ L A SD V + ++ S Y+G +W+ + Q +K+ D PV KF
Sbjct: 143 KTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLI 123
P +I+ + D + +++Y+ + ++ H + C+ + + ++++ S+D L+
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL--DRTVKVWQL 172
+WN + Q +GHT V+ +P N ASA+L D+T+K+W+
Sbjct: 262 YIWNLQ-TKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 310
Score = 63.6 bits (156), Expect = 3e-12
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRA---AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
+ +W++ + +K++ V WIV+GS+D V ++N T E
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 96 EAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLWNWE 129
+ H+D V A HPT+ + +++ +D IKLW +
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 61.3 bits (150), Expect = 2e-11
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
A+ S VK + FTL GH K V+ V + G+ +L S + D+L+KIW +
Sbjct: 1 ATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYD 54
Query: 219 KTCVQTLE 226
+T+
Sbjct: 55 GKFEKTIS 62
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 146 bits (370), Expect = 5e-42
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 22/207 (10%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ + + +++ D V + +P + IV+ S D + ++ T +F H
Sbjct: 174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP------ 152
++VR V + + + S+D +++W C+ H H V I P
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSS 292
Query: 153 -------------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK 199
K S S D+T+K+W + + TL GH+ V V ++ GG
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK- 351
Query: 200 PYLISGADDRLVKIWDYQNKTCVQTLE 226
+++S ADD+ +++WDY+NK C++TL
Sbjct: 352 -FILSCADDKTLRVWDYKNKRCMKTLN 377
Score = 141 bits (358), Expect = 3e-40
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
PV F P + +V+ S+D + V++Y T + + + H+D V+ ++ + L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
DM IKLW+++ + C + GH H V + I P + + SAS D+T+K+W++ +
Sbjct: 170 ADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
T GH + V V G + S ++D+ V++W K C L
Sbjct: 228 KTFTGHREWVRMVRPNQDGT--LIASCSNDQTVRVWVVATKECKAELR 273
Score = 131 bits (333), Expect = 1e-36
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Query: 54 EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF 113
+V +L + + + E+ ++ H V V HP
Sbjct: 64 KVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEK-YALSGHRSPVTRVIFHPVFSV 122
Query: 114 LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
++++S+D IK+W++E ++ +GHT V I + AS S D T+K+W
Sbjct: 123 MVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ 180
Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
T+ GH+ V+ V GD +++S + D+ +K+W+ Q CV+T
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFT 231
Score = 124 bits (313), Expect = 8e-34
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W +T VK+F VR + I + S+D V V+ T E H
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Query: 99 SDYVRCVAVHP--------------------TQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
V C++ P PFLL+ S D IK+W+ C
Sbjct: 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTL 334
Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD 198
GH ++V ++ + S + D+T++VW + TL HE V +D++
Sbjct: 335 VGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA- 392
Query: 199 KPYLISGADDRLVKIWDYQ 217
PY+++G+ D+ VK+W+ +
Sbjct: 393 -PYVVTGSVDQTVKVWECR 410
Score = 71.1 bits (175), Expect = 1e-14
Identities = 24/122 (19%), Positives = 52/122 (42%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
+ + + + P++L+ + + +W+ T + + D VR F
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+I++ +DD + V++Y + AH +V + H T P+++T S D +K+
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Query: 126 WN 127
W
Sbjct: 407 WE 408
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 143 bits (361), Expect = 3e-39
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 6/217 (2%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
+V CC L P ++ +G + + N+ S VR +F
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
+++ S+D + V+N+ T + +AH + V+ + LL+ S D +K+WN
Sbjct: 1017 TLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVIT 1074
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
++ F H V+ I+ D F+S S D+T K+W SP L+GH V C
Sbjct: 1075 -GRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRC 1132
Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
+ G L +G D+ ++IW+ + + +
Sbjct: 1133 SAFSLDGI--LLATGDDNGEIRIWNVSDGQLLHSCAP 1167
Score = 137 bits (347), Expect = 2e-37
Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 10/198 (5%)
Query: 30 MLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
M+ ++ + + +T Q E V P ++ G +D + +
Sbjct: 936 MVLAVDNIRGLQLIAGKTGQIDYLPEA---QVSCCCLSPHLEYVAFGDEDGAIKIIELPN 992
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
F S H VR + L++SS+D +I++WNW+ + H V
Sbjct: 993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT--GDYVFLQAHQETVKDF 1050
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
+ ++ S S D TVKVW + + H+ V S + D
Sbjct: 1051 RLLQ--DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT--KFSSTSAD 1106
Query: 209 RLVKIWDYQNKTCVQTLE 226
+ KIW + + + L+
Sbjct: 1107 KTAKIWSFDLLSPLHELK 1124
Score = 137 bits (346), Expect = 2e-37
Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 19/240 (7%)
Query: 2 PLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
++ + + +D V + + + + V+ ET + + + + V
Sbjct: 602 TIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL 661
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP--TQPFLLTSSD 119
F ++I T S D +V +++ T + H+++ HS+ V C L T S+
Sbjct: 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
D +KLW+ + C+ GHT+ V +P D+ AS S D T+++W + SA+
Sbjct: 722 DFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERK 779
Query: 180 TL-------------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
++ E E V C + GD +I A ++++ + + +
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGD--KIIVAAKNKVLLFDIHTSGLLAEIHT 837
Score = 136 bits (344), Expect = 5e-37
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 17/232 (7%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP- 67
+ A D V CC + ++ + V +W+ T + V +++ V F
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710
Query: 68 -RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
+ TGS+D + +++ N E ++ H++ V P L + S D ++LW
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 127 NWE------------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
+ + + E V + D + A+ ++ + S
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIVAAKNKVLLFDIHTS 829
Query: 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
GH + D+ + V++W+ ++ V
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDH--LAVIALSQYCVELWNIDSRLKVADCR 879
Score = 130 bits (329), Expect = 5e-35
Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 10/198 (5%)
Query: 30 MLASLYNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
+ V +++ T+ + + ++ F P + V V ++N ++
Sbjct: 812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 871
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
+ H +V V P LT+SDD I++W +K + + +
Sbjct: 872 RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK---VCKNSAIVLKQEIDV 928
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
V + + R +++ + E V+C + Y+ G +D
Sbjct: 929 VFQE-NETMVLAVDNIRGLQLIAGKTGQ---IDYLPEAQVSCCCLSPHLE--YVAFGDED 982
Query: 209 RLVKIWDYQNKTCVQTLE 226
+KI + N +
Sbjct: 983 GAIKIIELPNNRVFSSGV 1000
Score = 129 bits (326), Expect = 1e-34
Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 17/227 (7%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
V+ +++S + + VWN +T + V+ + +
Sbjct: 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQ- 1054
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
+ +++ S D V V+N T F H V A+ ++S D K+W++
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW---------QLGSASPNF 179
+ + +GH V + D A+ + +++W S
Sbjct: 1115 D-LLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
H V V + L+S +K W+ QT
Sbjct: 1173 GTATHGGWVTDVCFSPDSK--TLVSA--GGYLKWWNVATGDSSQTFY 1215
Score = 127 bits (320), Expect = 7e-34
Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 9/216 (4%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+ T ++ CD P + + +L V +WN ++ V V F
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
P + +T SDD + V+ + + + V + +L + ++L
Sbjct: 892 PDGSSFLTASDDQTIRVWETKKVCK--NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ Q+ V ++P A D +K+ +L + + GH+K
Sbjct: 950 AGK----TGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004
Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222
V + + G LIS ++D ++++W++Q V
Sbjct: 1005 AVRHIQFTADGK--TLISSSEDSVIQVWNWQTGDYV 1038
Score = 126 bits (317), Expect = 2e-33
Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
++A + + + + + + H+D V + +
Sbjct: 582 LQAKQEGDTGRLYLEWINKKTIKNLSRLVVR------PHTDAVYHACFSQDGQRIASCGA 635
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
D ++++ E + H V+ + D++ A+ S D+ VK+W +
Sbjct: 636 DKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVH 693
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
T + H + VNC + + + L +G++D +K+WD K C T+
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF 740
Score = 124 bits (314), Expect = 5e-33
Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 14/213 (6%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
L A + VK L + +L+ ++G V VWN T + + F V +
Sbjct: 1040 LQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE- 129
+ S D +++++ L H + H+ VRC A L T D+ I++WN
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Query: 130 -------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+ ++ H +V + +P D+ T SA +K W + + + T
Sbjct: 1159 GQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSSQTFY 1215
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+ + + ++ + ++ I
Sbjct: 1216 TNGTNLKKIHVSPDFR--TYVTVDNLGILYILQ 1246
Score = 118 bits (297), Expect = 9e-31
Identities = 34/235 (14%), Positives = 84/235 (35%), Gaps = 21/235 (8%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL---------- 58
+ ++ V C P + + + +G + +W+ + KS V
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796
Query: 59 ---PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAVHPTQPFL 114
V+ + + I+ + + +V +F+ +T H ++ P
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855
Query: 115 LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
+ + ++LWN + GH +V ++ +P D ++F +AS D+T++VW+
Sbjct: 856 VIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKK 913
Query: 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
K V + +++ + R +++ + E+ +
Sbjct: 914 VCK--NSAIVLKQEIDVVFQENET--MVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964
Score = 96.8 bits (241), Expect = 2e-23
Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 13/173 (7%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
R T V C + ++ + +W+ + + + + VR + F
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHS---------FEAHSDYVRCVAVHPTQPFLLTSSD 119
+ TG D+ ++ ++N + + HS H +V V P L+++
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1198
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
+K WN Q F + + +I ++P D T+ + + + Q+
Sbjct: 1199 Y--LKWWNVAT-GDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGILYILQV 1247
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 138 bits (351), Expect = 3e-39
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
+ S L + + +W+ T + + V ++ R I+TGS D V V++ NT
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNT 202
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVM 146
E ++ H + V + + ++T S D I +W+ ++V GH V
Sbjct: 203 GEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
+ D+ SAS DRT+KVW + TL GH++G+ C+ Y ++SG+
Sbjct: 261 VVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY----RDRLVVSGS 313
Query: 207 DDRLVKIWDYQNKTCVQTLE 226
D +++WD + C++ LE
Sbjct: 314 SDNTIRLWDIECGACLRVLE 333
Score = 132 bits (335), Expect = 7e-37
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 13/160 (8%)
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
IV+G D + +++ NTLE H+ V C+ ++T S D +++W+
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVN 201
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEK 186
H V+ + +N + S DR++ VW + S + L GH
Sbjct: 202 TG-EMLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
VN VD+ D Y++S + DR +K+W+ V+TL
Sbjct: 258 AVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLN 293
Score = 129 bits (327), Expect = 1e-35
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 24/200 (12%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT---LERFHSF 95
V VW+ T + + + V +F +VT S D + V++ + +
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
H V V ++++S D IK+WN + GH + + +
Sbjct: 253 VGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY---RD 306
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
S S D T+++W + + LEGHE+ V C+ + D ++SGA D +K+WD
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWD 362
Query: 216 ---------YQNKTCVQTLE 226
C++TL
Sbjct: 363 LVAALDPRAPAGTLCLRTLV 382
Score = 126 bits (318), Expect = 2e-34
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 28/202 (13%)
Query: 39 VHVWNHETNQNVKSFEVCDL-----PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93
+ VW+ + ++ V L V F +IV+ S D + V+N +T E
Sbjct: 235 IAVWDMASPTDITLRRV--LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
+ H + C+ +++ S D I+LW+ E AC +V EGH V I
Sbjct: 291 TLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--- 344
Query: 154 DNNTFASASLDRTVKVWQLGSASPNF---------TLEGHEKGVNCVDYYHGGDKPYLIS 204
DN S + D +KVW L +A TL H V + + D+ ++S
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF----DEFQIVS 400
Query: 205 GADDRLVKIWDYQNKTCVQTLE 226
+ D + IWD+ N Q
Sbjct: 401 SSHDDTILIWDFLNDPAAQAEP 422
Score = 102 bits (257), Expect = 1e-25
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 95 FEAHSDYVRCV-AVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
S+ + V + +++ D IK+W+ C+++ GHT V+ +
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--- 181
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
D + S D TV+VW + + TL H + V + + + +++ + DR + +
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAV 237
Query: 214 WDYQNKTCV---QTLE 226
WD + T + + L
Sbjct: 238 WDMASPTDITLRRVLV 253
Score = 93.2 bits (232), Expect = 3e-22
Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 15/161 (9%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ VWN T + V++ + ++ R +V+GS D + +++ E H
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 335
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVI 150
+ VRC+ +++ + D IK+W+ C + H+ V ++
Sbjct: 336 EELVRCIRFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393
Query: 151 NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
D S+S D T+ +W +
Sbjct: 394 ---DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYT 431
Score = 88.5 bits (220), Expect = 1e-20
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 126 WNWEKAWACQQVFEGHTHYVMQIV-INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
NW Q + + + D+ S D T+K+W + L GH
Sbjct: 114 SNWRCGRHSLQRIHCRSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGH 172
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
V C+ Y D+ +I+G+ D V++WD + TL
Sbjct: 173 TGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLI 210
Score = 34.2 bits (79), Expect = 0.029
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 39 VHVWNHETNQNVKSFEVCDL---------PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
+ VW+ + ++ V +F + IV+ S D + ++++
Sbjct: 358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWDFLND 415
Query: 90 ERFHSFEAHSDYVRCVAV 107
+ S +
Sbjct: 416 PAAQAEPPRSPSRTYTYI 433
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 137 bits (348), Expect = 5e-39
Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 12/231 (5%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVR 61
+ R + RV + HPT P +A G + +W+++ + +
Sbjct: 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT 122
Query: 62 AAKFVPRK-NWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
KF N + S + +++ ++ F ++ + CV V ++ L T
Sbjct: 123 GMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
+ L + + H V NP+ + A++S+D TVK+W L +
Sbjct: 183 STGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240
Query: 179 ---FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
HEK VN Y++ D L++ ++++ + + +
Sbjct: 241 NSYIAEMPHEKPVNAA-YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290
Score = 123 bits (310), Expect = 1e-33
Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 28/237 (11%)
Query: 15 SDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETN--QNVKSFEVCDLPVRAAKFVPRKNW 71
D + + L G + + + Q + D +
Sbjct: 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQM 177
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWE- 129
+ TG ++ + + + H V +P +L+ TSS D +KLW+
Sbjct: 178 LATGDSTGRLLLLGLDG-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236
Query: 130 -KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
K H V NP D+ + ++V+ S + H
Sbjct: 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH---- 292
Query: 189 NCVDYYH--------GGDKPYLISGA---------DDRLVKIWDYQNKTCVQTLESG 228
+ H +++G D R + I+D + V L
Sbjct: 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDP 349
Score = 108 bits (271), Expect = 5e-28
Identities = 18/163 (11%), Positives = 46/163 (28%), Gaps = 7/163 (4%)
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLW 126
+ + + + + + + V + HPT P + S I LW
Sbjct: 42 QSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILW 101
Query: 127 NWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN--FTLEG 183
+++ + G + + N + N +S+ + + +
Sbjct: 102 DYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS 161
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ CVD + L +G + + + +
Sbjct: 162 WDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGH-EIFKEK 201
Score = 87.4 bits (217), Expect = 2e-20
Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 26/232 (11%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
+ + K + C D+ + + G + + + ++ + ++ V A+
Sbjct: 153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE-IFKEKLHKAKVTHAE 211
Query: 65 FVPRKNWIV-TGSDDMQVCVFNYNTLER---FHSFEAHSDYVRCVAVHPT-QPFLLTSSD 119
F PR +W++ T S D V +++ ++ + + H V +PT LLT+
Sbjct: 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ 271
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFAS---------ASLDR 165
I++++ W+ H H Q + K + + + R
Sbjct: 272 RNEIRVYSSY-DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKR 330
Query: 166 TVKVWQLGSASPNFTLEGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWD 215
T+ ++ S L ++ + GD L SG + IW+
Sbjct: 331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD--VLASGMGFN-ILIWN 379
Score = 62.8 bits (153), Expect = 9e-12
Identities = 24/186 (12%), Positives = 53/186 (28%), Gaps = 25/186 (13%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVC---DLPVRAAK 64
K +V + +P W++A+ V +W+ ++ S+ + PV AA
Sbjct: 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY 257
Query: 65 FVPRK-NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYV---------------RCVAVH 108
F P ++T ++ V++ + H +
Sbjct: 258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317
Query: 109 PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRT 166
L +D I +++ + +P + AS
Sbjct: 318 RYPDDQLLLNDKRTIDIYDANSG-GLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFN 374
Query: 167 VKVWQL 172
+ +W
Sbjct: 375 ILIWNR 380
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 135 bits (342), Expect = 1e-38
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 4/190 (2%)
Query: 37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
H+ +W+ E + +KS + + F P ++ TG+ +V +F + ++ +S +
Sbjct: 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
++ +A P +L + + D +I +++ EGH + + +P D+
Sbjct: 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSP-DSQ 219
Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216
+AS D +K++ + A+ TL GH V V + + +S + D+ VK+WD
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT--HFVSSSSDKSVKVWDV 277
Query: 217 QNKTCVQTLE 226
+TCV T
Sbjct: 278 GTRTCVHTFF 287
Score = 134 bits (340), Expect = 2e-38
Identities = 39/224 (17%), Positives = 84/224 (37%), Gaps = 10/224 (4%)
Query: 9 RKLTARSDRVKCC----DLHPTEPWMLASLYNGHVHVWNHETNQN--VKSFEVCDLPVRA 62
++ A D + + ++ + V VW + S E L V +
Sbjct: 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVS 85
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
+ S D + +++ ++ S +A +A P +L T +
Sbjct: 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 145
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+ ++ E + + +++ I +P D AS ++D + ++ + + TLE
Sbjct: 146 VNIFGVESG-KKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
GH + + + D L++ +DD +KI+D Q+ TL
Sbjct: 204 GHAMPIRSLTFSP--DSQLLVTASDDGYIKIYDVQHANLAGTLS 245
Score = 133 bits (338), Expect = 5e-38
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V+++ E+ + S + + + + P ++ +G+ D + +F+ T + H+ E H
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+ +R + P L+T+SDD IK+++ + A GH +V+ + P D+ F
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCP-DDTHF 263
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
S+S D++VKVW +G+ + T H+ V V Y G ++S DD+ + I+D
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS--KIVSVGDDQEIHIYD 318
Score = 126 bits (320), Expect = 2e-35
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 8/160 (5%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA----VHPTQPFLLTSSDDMLIKLWN 127
S + F +AH D + VA ++T S D L+K+W
Sbjct: 5 HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK 64
Query: 128 WE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
W + Q EGH V+ + I+ AS+SLD +++W L + +++
Sbjct: 65 WRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV 123
Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ + YL +G V I+ ++ +L+
Sbjct: 124 DAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLD 161
Score = 98.7 bits (247), Expect = 8e-25
Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+++++ T + + + E +P+R+ F P +VT SDD + +++ + H
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+ +V VA P ++SS D +K+W+ C F H V + N + +
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG-TRTCVHTFFDHQDQVWGVKYNG-NGSKI 305
Query: 159 ASASLDRTVKVWQL 172
S D+ + ++
Sbjct: 306 VSVGDDQEIHIYDC 319
Score = 57.5 bits (140), Expect = 4e-10
Identities = 19/93 (20%), Positives = 37/93 (39%)
Query: 37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
G++ +++ + + V F P V+ S D V V++ T H+F
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
H D V V + +++ DD I +++
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320
Score = 34.7 bits (81), Expect = 0.017
Identities = 2/26 (7%), Positives = 7/26 (26%)
Query: 201 YLISGADDRLVKIWDYQNKTCVQTLE 226
+ + + L Q + +
Sbjct: 4 HHHHSSRENLYFQGTNQYGILFKQEQ 29
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 138 bits (350), Expect = 4e-38
Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 11/228 (4%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
LT ++ + D P+ P+ + S + V ++ + +F V + ++ P
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFE-------AHSDYVRCVAVHPTQPFLLTSSDD 120
+ + D + ++N + FE AHS V + P + ++S D
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
IK+WN + + G Q+ I S S + + S +
Sbjct: 261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQV 319
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
GH K + + G L S + + WD +
Sbjct: 320 RYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDV 365
Score = 121 bits (306), Expect = 5e-32
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 10/194 (5%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF--HSFE 96
V V + + + AK P + +G V +++ +
Sbjct: 44 VPVGSLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 97 AHSDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
S V+ ++ + + + ++ ++ G + + P
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSR 159
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
S S D TV +++ T H K V+ V Y G S D + ++
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLY 217
Query: 215 DYQNKTCVQTLESG 228
+ + T E
Sbjct: 218 NGVDGTKTGVFEDD 231
Score = 116 bits (293), Expect = 3e-30
Identities = 26/194 (13%), Positives = 58/194 (29%), Gaps = 11/194 (5%)
Query: 39 VHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA 97
+ +WN T + K+ V + + + K +V+ S + + N
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
H+ + ++ L ++ + I W+ + + + H + I
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS--KGD 380
Query: 158 FASASLDRTVKVWQL---GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+ S D +KV G S + GD + A + + I+
Sbjct: 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IAVAACYKHIAIY 437
Query: 215 DYQNKTCVQTLESG 228
+ + S
Sbjct: 438 S--HGKLTEVPISY 449
Score = 116 bits (292), Expect = 4e-30
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 12/191 (6%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
+ + H+ +++H V K ++ G D +V V+ +
Sbjct: 425 IAVAACYKHIAIYSHGKLTEVPI----SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480
Query: 90 ERFHS-FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVM 146
H + VA FL+ + + ++ A + HT V
Sbjct: 481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 540
Query: 147 QIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS 204
+ +P DN A+ SLD +V VW + S P H + ++S
Sbjct: 541 CVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVS 597
Query: 205 GADDRLVKIWD 215
D +K W+
Sbjct: 598 AGQDSNIKFWN 608
Score = 104 bits (261), Expect = 7e-26
Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 14/204 (6%)
Query: 31 LASLYNGHVHVWNHETNQNVKSFEVCDL---PVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87
++ H+ V + S V + + V + + Y+
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-HIAI--YS 438
Query: 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
+ +++ CVA+ + F+ D + ++ A + H +
Sbjct: 439 HGKLTEVPISYN--SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 496
Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSASP---NFTLEGHEKGVNCVDYYHGGDKPYLIS 204
+ + + + R V + + + + H V CV + L +
Sbjct: 497 VAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV--RLAT 553
Query: 205 GADDRLVKIWDYQNKTCVQTLESG 228
G+ D V +W+ + + G
Sbjct: 554 GSLDNSVIVWNMNKPSDHPIIIKG 577
Score = 87.6 bits (218), Expect = 4e-20
Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKS-FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87
+A + VHV+ + V + + F ++V +V ++
Sbjct: 462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521
Query: 88 T---LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-AWACQQVFEGHTH 143
L +S+ H+ V CV+ P L T S D + +WN K + + H
Sbjct: 522 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 581
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQL 172
+ VI + T SA D +K W +
Sbjct: 582 SSVNSVIWL-NETTIVSAGQDSNIKFWNV 609
Score = 84.9 bits (211), Expect = 3e-19
Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 13/135 (9%)
Query: 98 HSDYVRCVAVHP-TQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
+ P + + + + + +++ H+H +P
Sbjct: 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLT----DTEIYTEHSHQTTVAKTSP-SG 71
Query: 156 NTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD--DRLV 211
AS + V++W + T+ V + + + + + +R
Sbjct: 72 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFG 129
Query: 212 KIWDYQNKTCVQTLE 226
++ + T L
Sbjct: 130 HVFLFDTGTSNGNLT 144
Score = 59.5 bits (145), Expect = 1e-10
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 132 WACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
+ + + + P D + + + TV V S + H
Sbjct: 10 FPS--LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVG---SLTDTEIYTEHSHQTTV 64
Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCV--QTLE 226
G Y SG V+IWD T + T+
Sbjct: 65 AKTSPSGY--YCASGDVHGNVRIWDTTQTTHILKTTIP 100
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 134 bits (339), Expect = 6e-38
Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 6/172 (3%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
V + K IV+ S D +V V++ T + H+ +V A P+ +
Sbjct: 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 120 DMLIKLWNWEKAW-----ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
D ++ A ++ HT+Y+ + +AS D T +W + S
Sbjct: 127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVES 185
Query: 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ GH V C+D +SG D+ +WD ++ CVQ E
Sbjct: 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Score = 130 bits (329), Expect = 2e-36
Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 16/229 (6%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL------PVR 61
+T V C P+ +A + V+ ++N +
Sbjct: 100 HAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS 158
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP--FLLTSSD 119
A F I+T S D +++ + + SF H V C+ + P++ ++
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP-- 177
D +W+ C Q FE H V + P + FAS S D T +++ L +
Sbjct: 219 DKKAMVWDMRSG-QCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVA 276
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
++ E G + VD+ G L +G +D + +WD + V L
Sbjct: 277 IYSKESIIFGASSVDFSLSGR--LLFAGYNDYTINVWDVLKGSRVSILF 323
Score = 119 bits (302), Expect = 1e-32
Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 8/212 (3%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
K+ + ++ + C ++ +L + +G +W+ E+ Q ++SF V
Sbjct: 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205
Query: 67 PRK--NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
P + N V+G D + V++ + + +FE H V V +P+ + SDD +
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265
Query: 125 LWNWEKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
L++ A ++ + + + + D T+ VW + S L
Sbjct: 266 LYDLR-ADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILF 323
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
GHE V+ + G SG+ D +++W
Sbjct: 324 GHENRVSTLRVSPDGT--AFCSGSWDHTLRVW 353
Score = 109 bits (275), Expect = 1e-28
Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 69 KNWIVTGSDDMQ-VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
K V + V ++ + + H + V C+ + +++SS D + +W+
Sbjct: 33 KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF------TL 181
+ +VM P A LD V+ L ++
Sbjct: 93 SFTT-NKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV 150
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
H ++ + + +++ + D +WD ++ +Q+
Sbjct: 151 AMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFH 193
Score = 91.1 bits (227), Expect = 8e-22
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 16/144 (11%)
Query: 94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN---WEKA----------WACQQVFEG 140
+ + + ++ L ++ KL + + A ++ +G
Sbjct: 3 ATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKG 62
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
H + V+ + D S+S D V VW + + + V Y G
Sbjct: 63 HGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-- 119
Query: 201 YLISGADDRLVKIWDYQNKTCVQT 224
+ G D ++
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENM 143
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 135 bits (341), Expect = 1e-36
Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 11/225 (4%)
Query: 11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RK 69
++A V+ ++ + V A
Sbjct: 336 MSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNA 395
Query: 70 NWIVTGSDDMQVCVFNYNTLERF-----HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
+ IV+ S D + ++ ++ HS +V V + F L+ S D ++
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---NFTL 181
LW+ A + F GHT V+ + + DN SAS DRT+K+W +
Sbjct: 456 LWDLA-AGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
EGH V+CV + +P ++S + D+ VK+W+ N TL
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Score = 120 bits (302), Expect = 2e-31
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 11/193 (5%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF---HSF 95
+ +W+ + + F V + F IV+ S D + ++N ++
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 96 EAHSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
E H D+V CV P QP ++++S D +K+WN + GHT YV + ++P
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSP- 571
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
D + AS D V +W L ++LE + ++ + + Y + A + +KI
Sbjct: 572 DGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNR---YWLCAATEHGIKI 627
Query: 214 WDYQNKTCVQTLE 226
WD ++K+ V+ L+
Sbjct: 628 WDLESKSIVEDLK 640
Score = 118 bits (298), Expect = 6e-31
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 11/221 (4%)
Query: 15 SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL-----PVRAAKFVPR 68
+D V ++ S + + +W + L V
Sbjct: 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD 441
Query: 69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN- 127
+ ++GS D ++ +++ F H+ V VA ++++S D IKLWN
Sbjct: 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
Query: 128 -WEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
E + + EGH +V + +P T SAS D+TVKVW L + TL GH
Sbjct: 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
V+ V G SG D +V +WD + +LE
Sbjct: 562 GYVSTVAVSPDGS--LCASGGKDGVVLLWDLAEGKKLYSLE 600
Score = 104 bits (262), Expect = 4e-26
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 10/193 (5%)
Query: 41 VWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD 100
+ N+ D P+ A + + + N E + S
Sbjct: 280 LENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT-MENAQKGEIMPNIPQMSA 338
Query: 101 YVRCV--AVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+ V AV T + N + HT V I + +
Sbjct: 339 FWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADII 398
Query: 159 ASASLDRTVKVWQLGSASPNF-----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
SAS D+++ +W+L + L GH V V G + +SG+ D +++
Sbjct: 399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGELRL 456
Query: 214 WDYQNKTCVQTLE 226
WD +
Sbjct: 457 WDLAAGVSTRRFV 469
Score = 94.4 bits (235), Expect = 1e-22
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 23/175 (13%)
Query: 60 VRAAKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
V +F P + IV+ S D V V+N + + + H+ YV VAV P +
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
D ++ LW+ + E ++ + + +P + +A+ + +K+W L S S
Sbjct: 580 GKDGVVLLWDLAE-GKKLYSLEANS-VIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSI 635
Query: 178 NFTLEGHEKGVNCVDYYHGGDKP-----------------YLISGADDRLVKIWD 215
L+ K G L SG D ++++W
Sbjct: 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690
Score = 69.7 bits (171), Expect = 5e-14
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 21/153 (13%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V VWN + + V P + +G D V +++ ++ +S EA+
Sbjct: 543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWN------------------WEKAWACQQVFEG 140
+ + P + +L +++ IK+W+ + + +
Sbjct: 603 -SVIHALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
Y + + D +T S D ++VW +G
Sbjct: 661 KVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 129 bits (327), Expect = 1e-36
Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 15/233 (6%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL----- 58
L ++ L + V +P +L S + + W + V
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
V+ + ++ S D + +++ T E + F H V V + +++ S
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP-----KDNNTFASASLDRTVKVWQLG 173
D IK+W + C GH +V Q+ + P D+ T SA D+ VK W L
Sbjct: 127 RDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
GH +N + D + S D + +W+ K + TL
Sbjct: 185 QFQIEADFIGHNSNINTLTASP--DGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Score = 119 bits (302), Expect = 7e-33
Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 13/193 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ T + + F V + + + I++GS D + V+ + + H
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGH 147
Query: 99 SDYVRCVAVHPTQ------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
+D+V V V P + ++++ +D ++K WN + + F GH + + +P
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASP 206
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
D ASA D + +W L + +TL + V + + +L + +K
Sbjct: 207 -DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRY--WLAAATATG-IK 261
Query: 213 IWDYQNKTCVQTL 225
++ + V L
Sbjct: 262 VFSLDPQYLVDDL 274
Score = 116 bits (294), Expect = 1e-31
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 88 TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWA----CQQVFEGHT 142
L + E H+ +V +A QP LL++S D + W + F+GH+
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
H V + D SAS D+T+++W + + GH+ V VD +
Sbjct: 66 HIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK--KASMI 122
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
ISG+ D+ +K+W + + C+ TL
Sbjct: 123 ISGSRDKTIKVWTIKGQ-CLATLL 145
Score = 95.7 bits (239), Expect = 9e-24
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 20/170 (11%)
Query: 60 VRAAKFVPRKN------WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF 113
V + VP + I++ +D V +N N + F H+ + + P
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 114 LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
+ ++ D I LWN A V + +P + A+A+ +KV+ L
Sbjct: 211 IASAGKDGEIMLWNLA-AKKAMYTLSAQ-DEVFSLAFSP-NRYWLAAAT-ATGIKVFSLD 266
Query: 174 SASPNFTL--------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
L + E + + D L +G D ++++W
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSA--DGQTLFAGYTDNVIRVWQ 314
Score = 79.1 bits (196), Expect = 1e-17
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 10/145 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V WN Q F + + P I + D ++ ++N + ++ A
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-------AWACQQVFEGHTHYVMQIVIN 151
D V +A P + +L ++ IK+++ + + + + + +
Sbjct: 238 -DEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 152 PKDNNTFASASLDRTVKVWQLGSAS 176
D T + D ++VWQ+ +A+
Sbjct: 296 A-DGQTLFAGYTDNVIRVWQVMTAN 319
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 131 bits (331), Expect = 2e-36
Identities = 6/201 (2%), Positives = 23/201 (11%), Gaps = 15/201 (7%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF------ 92
+ + + +
Sbjct: 90 AVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149
Query: 93 -HSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWE----KAWACQQVFEGHTHYVM 146
+ + + L+ + + +
Sbjct: 150 AFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYR 209
Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISG 205
+ A+ V + + + + E
Sbjct: 210 DPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQA--GADWT 267
Query: 206 ADDRLVKIWDYQNKTCVQTLE 226
A E
Sbjct: 268 AAPAPAAGGWDTAAAPAPGWE 288
Score = 124 bits (315), Expect = 3e-34
Identities = 0/208 (0%), Positives = 0/208 (0%), Gaps = 24/208 (11%)
Query: 39 VHVWNHETNQNVKSFEVCDLP-------VRAAKFVP-RKNWIVTGSDDMQVCVFNYNTLE 90
+ + K G +
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 91 RFHSFEA-----HSDYVRCVAVH-PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
+ R + + + A E T
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDA 251
Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH-------EKGVNCVDYYHGG 197
Q P + +A+P E
Sbjct: 252 AAQPAAIP-AQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAA 310
Query: 198 DKPYLISGADDRLVKIWDYQNKTCVQTL 225
Sbjct: 311 -- 336
Score = 121 bits (305), Expect = 7e-33
Identities = 8/234 (3%), Positives = 35/234 (14%), Gaps = 22/234 (9%)
Query: 9 RKLTARSDRVKCC----DLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
++ +D ++ + + ++ + A +
Sbjct: 19 IQMMLAADVHLGTKNCDFQM-----ERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIE 73
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
+ + H+ + +
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133
Query: 125 LWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW-----QLG 173
+ I I + + L +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTI 193
Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLE 226
+ + + + + + +Y E
Sbjct: 194 LPGHKWDVMVDLFFYRDPE-EAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGE 246
Score = 118 bits (298), Expect = 8e-32
Identities = 11/164 (6%), Positives = 27/164 (16%), Gaps = 10/164 (6%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++ N + + + + + + L +
Sbjct: 39 ERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYT 98
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-------TLEGH 184
+ HT + + L Q S
Sbjct: 99 -GAHAIAGRHTPGTFTNQLQT-SFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDS 156
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+ K G L+ Q + +
Sbjct: 157 PMRYVDIGIPANN-KGKQSIGCLFWLLARMVLQMRGTILPGHKW 199
Score = 111 bits (280), Expect = 3e-29
Identities = 0/235 (0%), Positives = 0/235 (0%), Gaps = 23/235 (9%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL-----PV 60
I T R + + + + + D+
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208
Query: 61 RAAKFV-PRKNWIVTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAVHPTQPFLLTSS 118
R + ++ V Y E +D A P Q ++
Sbjct: 209 RDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTA 268
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTH-------YVMQIVINPKDNNTFASASLDRTVKVWQ 171
A A +E +
Sbjct: 269 APAPAAGGWDT-AAAPAPGWEQGSAPVPAAAP- 326
Query: 172 LGSASPNFTL----EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222
Sbjct: 327 -- 379
Score = 78.8 bits (195), Expect = 3e-17
Identities = 5/94 (5%), Positives = 17/94 (18%), Gaps = 4/94 (4%)
Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVD 192
+ RT ++ + L+ + + ++
Sbjct: 16 EQDIQMMLAADVHLGTKNCD--FQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIE 73
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
D + + + Q
Sbjct: 74 N--PQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 129 bits (327), Expect = 2e-36
Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 23/236 (9%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL-----PVRA 62
+ L +++ D +LA+ + + + + + + +V D +R+
Sbjct: 8 KSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-DVLDETAHKKAIRS 63
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQPFLL 115
+ P + + GS D V ++ ++ E H + V+ VA +L
Sbjct: 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 116 TSSDDMLIKLWNWE---KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
T S D + +W + + + C V + H+ V ++ +P AS+S D TV++W+
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKD 182
Query: 173 --GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
L GHE V D+ L SG+DD V++W Y E
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238
Score = 120 bits (303), Expect = 7e-33
Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 27/213 (12%)
Query: 39 VHVWNHETNQNVKSFEVCDLP-------VRAAKFVPRKNWIVTGSDDMQVCVFNYNT--- 88
V +W E + + V+ + ++ T S D V ++ +
Sbjct: 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141
Query: 89 -LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVM 146
E + HS V+ V HP++ L +SS D +++W W C V GH V
Sbjct: 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW 201
Query: 147 QIVINPKDNNTF--ASASLDRTVKVWQLGSASPNFT---------LEGHEKGVNCVDYYH 195
+ F S S D TV+VW+ + + H++ V V +
Sbjct: 202 SSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF 260
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
G + S D ++ +++ + +
Sbjct: 261 NG---LIASVGADGVLAVYEEVDGEWKVFAKRA 290
Score = 109 bits (275), Expect = 8e-29
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 19/153 (12%)
Query: 88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN---WEKAWACQQVFEGHTHY 144
++ S + + + + L T S D IKL + + H
Sbjct: 3 SINLIKSLKLYKEKIWSFDFSQGI--LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60
Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-------TLEGHEKGVNCVDYYHGG 197
+ + P + A+ S D TV +W ++ +EGHE V V + + G
Sbjct: 61 IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 198 DKPYLISGADDRLVKIWD----YQNKTCVQTLE 226
YL + + D+ V IW+ + C+ L+
Sbjct: 120 Y--YLATCSRDKSVWIWETDESGEEYECISVLQ 150
Score = 107 bits (270), Expect = 4e-28
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 18/174 (10%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHP--TQPFLL 115
V+ + P + + + S D V ++ E H V L
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 116 TSSDDMLIKLWNWEKA-------WACQQV-FEGHTHYVMQIVINPKDNNTFASASLDRTV 167
+ SDD +++W + W C+ + + H V + N AS D +
Sbjct: 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVL 273
Query: 168 KVWQLGS----ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
V++ L +N V + K L +G DD +V W +
Sbjct: 274 AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 76.1 bits (188), Expect = 2e-16
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 20/186 (10%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKF 65
L S VK HP+E +LAS Y+ V +W + + V + V ++ F
Sbjct: 147 SVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205
Query: 66 VP--RKNWIVTGSDDMQVCVFNYNTLERFHS---------FEAHSDYVRCVAVHPTQPFL 114
+ +GSDD V V+ Y + + H V VA +
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LI 264
Query: 115 LTSSDDMLIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTF-ASASLDRTVKVW 170
+ D ++ ++ E ++ + + + + T A+ D V W
Sbjct: 265 ASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324
Query: 171 QLGSAS 176
L A+
Sbjct: 325 SLEKAA 330
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 129 bits (328), Expect = 2e-36
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 7/170 (4%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
+ A + +++ S D ++ +++ T + H+ S +V A P+ ++
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 120 DMLIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
D + ++N E + GHT Y+ +N ++S D T +W + +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQ 175
Query: 177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
T GH V + D +SGA D K+WD + C QT
Sbjct: 176 QTTTFTGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFT 223
Score = 128 bits (323), Expect = 1e-35
Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 17/227 (7%)
Query: 9 RKLTARSDRVKCCDLHP--TEPWMLAS-LYNGHVHVWNHETNQN----VKSFEVCDLPVR 61
+ RS V C P +A + ++N +T + + +
Sbjct: 91 HAIPLRSSWVMTCAYAPSGN---YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147
Query: 62 AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
+F+ N IVT S D +++ T ++ +F H+ V +++ P ++ + D
Sbjct: 148 CCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 122 LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP--NF 179
KLW+ + C+Q F GH + I P + N FA+ S D T +++ L + +
Sbjct: 207 SAKLWDVREG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ + G+ V + G L++G DD +WD L
Sbjct: 265 SHDNIICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKADRAGVLA 309
Score = 118 bits (299), Expect = 3e-32
Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 6/179 (3%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+W+ ET Q +F V + P V+G+ D +++ +F H
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH--YVMQIVINPKDNN 156
+ + P T SDD +L++ A + + + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSK-SGR 283
Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+ D VW A L GH+ V+C+ G + +G+ D +KIW+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM--AVATGSWDSFLKIWN 340
Score = 109 bits (275), Expect = 1e-28
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 14/172 (8%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
R A + I D + + + H + + LL++S
Sbjct: 20 DARKACADATLSQITNNIDPV-----GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
D + +W+ + +VM P N A LD ++ L + N
Sbjct: 75 QDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGN 132
Query: 179 F----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
L GH ++C + +++ + D +WD + T
Sbjct: 133 VRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 128 bits (325), Expect = 3e-36
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 14/190 (7%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V ++ + + V + F +++GS D V + ++ +AH
Sbjct: 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKV--WKEGSLVYNLQAH 141
Query: 99 SDYVRCV-AVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNN 156
+ V V ++ LT+S D IKLW +K + F G H V + + +
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVD--DG 196
Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216
F S S D +K+ + + T EGHE V C+ GD ++S +DR V+IW
Sbjct: 197 HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSK 253
Query: 217 QNKTCVQTLE 226
+N + Q +
Sbjct: 254 ENGSLKQVIT 263
Score = 117 bits (296), Expect = 6e-32
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 15/171 (8%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
VR V + + + S D V +++ + ++ V + LL
Sbjct: 21 VRDVVAVD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK 79
Query: 120 DMLIK---LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
D +I L+ GH V + S S D+T KVW+ GS
Sbjct: 80 DTMINGVPLFATSGE-DPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWKEGSLV 135
Query: 177 PNFTLEGHEKGVNCVDYY-HGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ L+ H V +K ++ + D+ +K+W N ++T
Sbjct: 136 --YNLQAHNASVWDAKVVSFSENK--FLTASADKTIKLWQ--NDKVIKTFS 180
Score = 114 bits (288), Expect = 7e-31
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFV-PRKNWIVTGSDDMQVCVFNYNTLERFHSFE- 96
VW V + + + V AK V +N +T S D + ++ + + +F
Sbjct: 126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI--KTFSG 181
Query: 97 AHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
H+D VR +AV ++ S+D LIKL + + +EGH +V I + P N
Sbjct: 182 IHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLP--N 236
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
S DRTV++W + S + + VD GD +I G+ D LV+I+
Sbjct: 237 GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD---IIVGSSDNLVRIFS 293
Query: 216 YQNKTCV--QTLE 226
+ ++
Sbjct: 294 QEKSRWASEDEIK 306
Score = 108 bits (272), Expect = 2e-28
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
+ + H VR V + + S D ++LW+ + W V ++ + +
Sbjct: 12 ATLKGHDQDVRDVVAVDDS-KVASVSRDGTVRLWSKDDQW-LGTVVYTGQGFLNSVCYDS 69
Query: 153 KDNNTFASASLDRTVK---VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
+ D + ++ P +TL GH+ V + + G +ISG+ D+
Sbjct: 70 -EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG----VVISGSWDK 124
Query: 210 LVKIWDYQNKTCVQTLE 226
K+W + V L+
Sbjct: 125 TAKVWK--EGSLVYNLQ 139
Score = 81.4 bits (202), Expect = 2e-18
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+ +GH V +V ++ AS S D TV++W + + +N V
Sbjct: 8 YQLSATLKGHDQDVRDVVAVD--DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV 65
Query: 192 DYYHGGDKPYLISGADDRLVK---IWDYQNKTCVQTLE 226
Y +K L+ G D ++ ++ + + TL
Sbjct: 66 CYDS--EKELLLFGGKDTMINGVPLFATSGEDPLYTLI 101
Score = 64.5 bits (158), Expect = 1e-12
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ + + T ++++E + V K +P IV+ +D V +++
Sbjct: 207 IKLVDMHTGDVLRTYEGHESFVYCIKLLP-NGDIVSCGEDRTVRIWSKENGSLKQVITLP 265
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYV 145
+ + V ++ S D L+++++ EK+ WA + +G
Sbjct: 266 AISIWSVDCMSNG-DIIVGSSDNLVRIFSQEKSRWASEDEIKGELRSG 312
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 129 bits (326), Expect = 1e-35
Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 26/222 (11%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
L +GH ++N K + D + + G+ + + V + N
Sbjct: 70 HLYKARLDGHDFLFNTIIRDGSKMLKRADY-TAVDTAKLQMRRFILGTTEGDIKVLDSNF 128
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
+ +AH + + P+ L++SS DM +K+W+ + + + GH V I
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIGHRATVTDI 187
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE---KGVNCVDYYHGGDKP----- 200
I SASLD T+++W+ G+ + T E GVN + + G D+
Sbjct: 188 AIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246
Query: 201 --------------YLISGADDRLVKIWDYQNKTCVQTLESG 228
Y+I+G ++ + + +K L S
Sbjct: 247 TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288
Score = 128 bits (323), Expect = 3e-35
Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 5/167 (2%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
+ F + + D +FN + +DY + +
Sbjct: 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRD-GSKMLKRADYTAVDTAKLQMRRFILGTT 117
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
+ IK+ + +++ + H + ++ P S+S D +K+W + S
Sbjct: 118 EGDIKVLDSNF-NLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPR 175
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
TL GH V + G ++S + D +++W+ T + T
Sbjct: 176 TLIGHRATVTDIAIIDRGR--NVLSASLDGTIRLWECGTGTTIHTFN 220
Score = 121 bits (305), Expect = 2e-32
Identities = 23/214 (10%), Positives = 58/214 (27%), Gaps = 29/214 (13%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT------LERF 92
+ +W+ + N ++ V + R +++ S D + ++ T R
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222
Query: 93 ------------------HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC 134
E + + +++ +I + N
Sbjct: 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282
Query: 135 QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVD 192
Q+ T + ++ + N + + + W L L +N V
Sbjct: 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ G +S D +K+ + +
Sbjct: 343 FAAGA---LFVSSGFDTSIKLDIISDPESERPAI 373
Score = 118 bits (297), Expect = 2e-31
Identities = 32/214 (14%), Positives = 70/214 (32%), Gaps = 28/214 (13%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ V + N + + + KF P +++ S DMQ+ +++ + H
Sbjct: 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWN------------------WEKAWA-----CQ 135
V +A+ +L++S D I+LW + A +
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240
Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYY 194
Q+ E T + + + + V + S N +
Sbjct: 241 QLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT-V 298
Query: 195 HGGDKPYLISGADDRLVKIWDYQNKTCV--QTLE 226
G + Y+ +G ++ ++ WD ++ C + L
Sbjct: 299 DGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI 332
Score = 98.1 bits (245), Expect = 3e-24
Identities = 15/173 (8%), Positives = 46/173 (26%), Gaps = 15/173 (8%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAV-HPTQPFLLT 116
+F +++ G + V N + E+ + + V ++
Sbjct: 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308
Query: 117 SSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
++ ++ W+ + + + F S+ D ++K+ +
Sbjct: 309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA--GALFVSSGFDTSIKLDIISDP 366
Query: 176 SPNFTLEGHEKGVNCVDYYHGG--------DKP--YLISGADDRLVKIWDYQN 218
E V D+ ++ + +++ N
Sbjct: 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419
Score = 81.5 bits (202), Expect = 3e-18
Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 12/137 (8%)
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLW-----NWEKAWACQQVFEGHTHYV---MQIV 149
+ + + +L +D+ + + N + + V G++ V
Sbjct: 4 MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNT 63
Query: 150 INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
+ A LD ++ + L I G +
Sbjct: 64 FEK-VGSHLYKARLDGHDFLFNTIIRDGSKML-KRADYTAVDTAKLQMR--RFILGTTEG 119
Query: 210 LVKIWDYQNKTCVQTLE 226
+K+ D + +
Sbjct: 120 DIKVLDSNFNLQREIDQ 136
Score = 27.2 bits (61), Expect = 5.1
Identities = 7/89 (7%), Positives = 18/89 (20%), Gaps = 30/89 (33%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ + ++ + + P + SDD
Sbjct: 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE------------------- 398
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+ +L + L+N
Sbjct: 399 -----------SNGEVLEVGKNNFCALYN 416
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 129 bits (326), Expect = 2e-35
Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 31/244 (12%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
+ L V C L + +++ + + V++ + + D V A K+
Sbjct: 113 QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIK 124
+V+GS D V V++ H FE H+ VRC+ + + +++T S D +
Sbjct: 172 H-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 125 LWNWEK----------------------AWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162
+W K V GH V ++ N S S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSG-HGNIVVSGS 287
Query: 163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222
D T+ VW + + L GH + Y H IS + D ++IWD +N +
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK--RCISASMDTTIRIWDLENGELM 345
Query: 223 QTLE 226
TL+
Sbjct: 346 YTLQ 349
Score = 120 bits (302), Expect = 6e-32
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 33/215 (15%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAK--FVPRKNWIVTGSDDMQVCVFNYNT-------- 88
V VW+ + FE + VR +IVTGS D + V+
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 89 ---------------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA 133
H VR V+ H +++ S D + +W+ +
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI--VVSGSYDNTLIVWDVAQM-K 301
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
C + GHT + + + + SAS+D T+++W L + +TL+GH V +
Sbjct: 302 CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+L+S A D ++ WD + + +
Sbjct: 361 ----SDKFLVSAAADGSIRGWDANDYSRKFSYHHT 391
Score = 118 bits (298), Expect = 2e-31
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 5/185 (2%)
Query: 42 WNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV-FNYNTLERFHSFEAHSD 100
N + + S + + + + + +N + + + H
Sbjct: 63 ENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMT 122
Query: 101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160
V +++T +DD +I++++ GH V + S
Sbjct: 123 SVITCLQFEDN-YVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYA--HGGILVS 178
Query: 161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220
S DRTV+VW + EGH V C+D + Y+++G+ D + +W ++
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 221 CVQTL 225
V
Sbjct: 239 SVPDH 243
Score = 112 bits (282), Expect = 4e-29
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 8/170 (4%)
Query: 60 VRAAKFVPRKNWIVTGSDD--MQVCV-FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLT 116
+ + N I+ S ++ + N+ + + F+S + L
Sbjct: 36 INSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSF 95
Query: 117 SSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
+ ++K W K + GH V+ + ++N + + D+ ++V+ +
Sbjct: 96 LENIFILKNWYNPKFVPQRTTLRGHMTSVIT-CLQF-EDNYVITGADDKMIRVYDSINKK 153
Query: 177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
L GH+ GV + Y HGG L+SG+ DR V++WD + C E
Sbjct: 154 FLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFE 200
Score = 110 bits (276), Expect = 3e-28
Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 8/162 (4%)
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
N +V+GS D + V++ ++ + H+D + + +++S D I++W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
+ E +GHT V + ++ K SA+ D +++ W S H
Sbjct: 338 DLE-NGELMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSRK-FSYHHTN 392
Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+Y + L+SG++++ I++ ++ V
Sbjct: 393 LSAITTFYVSDN--ILVSGSENQ-FNIYNLRSGKLVHANILK 431
Score = 102 bits (256), Expect = 2e-25
Identities = 23/182 (12%), Positives = 67/182 (36%), Gaps = 14/182 (7%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ VW+ + + + + + + ++ S D + +++ E ++ + H
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+ V + + FL++++ D I+ W+ ++ HT+ +N
Sbjct: 352 TALVGLLRLSDK--FLVSAAADGSIRGWDAND--YSRKFSYHHTNLSAITTFYV-SDNIL 406
Query: 159 ASASLDRTVKVWQLGSASP-NFTLEGHEKGVNCVDYYHGGDKPYLISGADD---RLVKIW 214
S S + ++ L S + + + V++ L++ + ++I
Sbjct: 407 VSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF----KGKTLVAAVEKDGQSFLEIL 461
Query: 215 DY 216
D+
Sbjct: 462 DF 463
Score = 83.1 bits (206), Expect = 1e-18
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 7/140 (5%)
Query: 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQ 147
+ ++ D + + V ++ S + KL E
Sbjct: 24 LKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYP 83
Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSASP-NFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
+ D + +K W P TL GH V + Y+I+GA
Sbjct: 84 KLSQQ-DRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDN---YVITGA 139
Query: 207 DDRLVKIWDYQNKTCVQTLE 226
DD++++++D NK + L
Sbjct: 140 DDKMIRVYDSINKKFLLQLS 159
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 130 bits (330), Expect = 3e-35
Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 17/217 (7%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVC---DLPVRAAK 64
+++ S R+ C L + P + +G V + + S VR +
Sbjct: 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213
Query: 65 FVP-RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDD 120
F P +++T D ++ F+ + E E + V+ + T D
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD 273
Query: 121 MLIKLWNWEKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
I++W+ C Q + Q+ + N S SLD T+ ++LG
Sbjct: 274 ATIRVWDVT-TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL 332
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
T+ GH KG+ + LISG+ D + W
Sbjct: 333 KTISGHNKGITALTVNP------LISGSYDGRIMEWS 363
Score = 130 bits (329), Expect = 3e-35
Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 11/197 (5%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNT---LERFHS 94
+ ++ ++ + A R +T DD V + +
Sbjct: 142 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 201
Query: 95 FEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
+VR V P + F++T D I ++ + + E V +
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALS 260
Query: 154 --DNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
D+ FA+ D T++VW + +TL+ + G V G+ +IS + D
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDG 319
Query: 210 LVKIWDYQNKTCVQTLE 226
+ ++ + ++T+
Sbjct: 320 TLNFYELGHDEVLKTIS 336
Score = 111 bits (281), Expect = 1e-28
Identities = 28/216 (12%), Positives = 71/216 (32%), Gaps = 26/216 (12%)
Query: 32 ASLYNGHVHVWNHETNQNVKSFEVCDL------PVRAAKFVPRKN--WIVTGSDDMQVCV 83
+ V + ++ V V KF P K ++ +G + +V V
Sbjct: 36 PCGKSAFVRCLDDGDSKVP---PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92
Query: 84 FNYNTLERFHS--------FEAHSDYVRCVAVHPTQPFLLT--SSDDMLIKLWNWEKAWA 133
+ + + +S F+ + + ++ L D +W+ +
Sbjct: 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGN 151
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNC 190
GH+ + + + D +V +Q ++ + T V
Sbjct: 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211
Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
V++ + ++I+ DR + +D ++ ++ +E
Sbjct: 212 VEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIE 246
Score = 106 bits (268), Expect = 6e-27
Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 16/197 (8%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
+ + + T +KS + + + G+ + +
Sbjct: 420 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
+++ P++ ++ I L++ + + T + I
Sbjct: 480 SFDL--KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 537
Query: 149 VINP---------KDNNTFASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYYHGGD 198
P + + A+ SLD + ++ + L H+ GVN + +
Sbjct: 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 597
Query: 199 KPYLISGADDRLVKIWD 215
L+S D +K W+
Sbjct: 598 ---LVSSGADACIKRWN 611
Score = 106 bits (266), Expect = 1e-26
Identities = 24/209 (11%), Positives = 65/209 (31%), Gaps = 24/209 (11%)
Query: 30 MLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
+S+ ++ + V ++ + A V +DD + + T
Sbjct: 385 EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDD-DLLILQSFT 436
Query: 89 LERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
+ S +S ++ + L + + KL + E + +
Sbjct: 437 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS---FDLKTPLRAKPSY 493
Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFT-LEGHEKGVNCVDY--------YHGGD 198
I I+P A+ + + ++ L S + +N + + +
Sbjct: 494 ISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552
Query: 199 KPYLISGADDRLVKIWDYQN-KTCVQTLE 226
+ + +G+ D + I+ + ++ L
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPMKIIKALN 581
Score = 91.1 bits (227), Expect = 2e-21
Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 22/186 (11%)
Query: 60 VRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLER--FHSFEAH-SDYVRCVAVHPTQ--PF 113
+ P N I V + + F H S V V P + +
Sbjct: 21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 80
Query: 114 LLTSSDDMLIKLWNWE-------KAWACQQVFEGHTHYVMQIVINPKDNNTF--ASASLD 164
L + + + +W W + F+ + I + + D
Sbjct: 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRD 139
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWD---YQNKT 220
S + + GH + +N +P + DD V + ++
Sbjct: 140 NFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSA 197
Query: 221 CVQTLE 226
+T
Sbjct: 198 SDRTHH 203
Score = 88.4 bits (220), Expect = 2e-20
Identities = 21/221 (9%), Positives = 63/221 (28%), Gaps = 25/221 (11%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
+ ++ + + ++P L S Y+G + W+ + S + +
Sbjct: 333 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSN-----LIVSLDNSK 382
Query: 68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
+ + S D + V E + + + + ++DD + +
Sbjct: 383 AQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDD-LLILQ 433
Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
+ V + + N + + K+ L +
Sbjct: 434 SFTGDIIKSVRLNSPGSAVSLSQNY-VAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAK 490
Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+ + Y+ +G + ++D Q++ + +
Sbjct: 491 PSYISISPSET--YIAAGDVMGKILLYDLQSREVKTSRWAF 529
Score = 81.9 bits (203), Expect = 3e-18
Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS-FEA 97
+ + E + ++K P + +I G ++ +++ + E S +
Sbjct: 472 FKLSDLEVSFDLK--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 529
Query: 98 HSDYVRCVAVHPTQ----------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
+ + ++ P + + T S D I +++ ++ + H V
Sbjct: 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 589
Query: 148 IVINPKDNNTFASASLDRTVKVWQL 172
++ +T S+ D +K W +
Sbjct: 590 LLWET--PSTLVSSGADACIKRWNV 612
Score = 80.0 bits (198), Expect = 1e-17
Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 12/142 (8%)
Query: 97 AHSDYVRCVAVHPTQPFLLTSS-DDMLIKLW-NWEKAWACQQVFEGH-THYVMQIVINP- 152
++ ++ PT + ++ + + F GH + V + +P
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLE--------GHEKGVNCVDYYHGGDKPYLIS 204
K + S V VW + ++E ++ + + G + ++
Sbjct: 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135
Query: 205 GADDRLVKIWDYQNKTCVQTLE 226
D + + + +
Sbjct: 136 EGRDNFGVFISWDSGNSLGEVS 157
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 127 bits (321), Expect = 7e-35
Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 13/230 (5%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRA 62
I +K R HPT P +A G + +WN +
Sbjct: 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITG 169
Query: 63 AKFVPRK-NWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
KF P N S + + ++ L F S + + + + V + ++T +
Sbjct: 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN 229
Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
+ L N + H V + +NP + A+AS+D+TVK+W L
Sbjct: 230 VGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287
Query: 180 TL---EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ H VN + G L++ ++++ C L
Sbjct: 288 SFLYSLPHRHPVNAACFSPDGA--RLLTTDQKSEIRVYSASQWDCPLGLI 335
Score = 115 bits (291), Expect = 1e-30
Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 24/236 (10%)
Query: 15 SDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNW 71
+ +P + G + + + N S + ++ +
Sbjct: 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWE- 129
+VTG + V + N + + + H V VA++P FL T+S D +K+W+
Sbjct: 224 VVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 130 -KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
+ A H H V +P D + ++V+ L H
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341
Query: 189 N------CVDYYHGGD----------KPYLISGADDRLVKIWDYQNKTCVQTLESG 228
++ + + + R + ++D + + L
Sbjct: 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397
Score = 106 bits (267), Expect = 4e-27
Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 12/166 (7%)
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLI 123
P + S + ++ +A HPT P + S I
Sbjct: 90 SWPSVQQGLQQSFLHTL-----DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDI 144
Query: 124 KLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFT 180
LWN+ K G + + NP + N F ++S++ T ++ +
Sbjct: 145 MLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS 204
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ +D +++G + V + + K + L
Sbjct: 205 SDTINIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGK-ELWNLR 247
Score = 99.8 bits (249), Expect = 1e-24
Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 27/217 (12%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYN 87
M+ + G+V + N + + + + + V P ++ T S D V +++
Sbjct: 223 MVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Query: 88 TLE---RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
+ F H V P LLT+ I++++ W C H H
Sbjct: 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS-QWDCPLGLIPHPHR 340
Query: 145 VMQIVINPK----------------DNNTFASASLD-RTVKVWQLGSASPNFTL-EGHEK 186
Q + K D N + + RT+ V+ S L +
Sbjct: 341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS 400
Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
G++ ++ ++ L S + IW Q +
Sbjct: 401 GISSLNEFNPMGD-TLASAMGYH-ILIWSQQEARTRK 435
Score = 74.7 bits (184), Expect = 8e-16
Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 25/187 (13%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVC---DLPVRAAK 64
L +V L+P W LA+ V +W+ + SF PV AA
Sbjct: 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDY-----------------VRCVAV 107
F P ++T ++ V++ + + H + V
Sbjct: 304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363
Query: 108 HPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIV-INPKDNNTFASASLDR 165
+P F + + I +++ Q+++ + + + NP +T ASA
Sbjct: 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GY 421
Query: 166 TVKVWQL 172
+ +W
Sbjct: 422 HILIWSQ 428
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 125 bits (316), Expect = 9e-35
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF-HSFEA 97
+ +W+ T + F V + F IV+GS D + ++N + ++ E+
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES 169
Query: 98 HSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
HS++V CV P + P +++ D L+K+WN + GHT Y+ + ++P D
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSP-DG 227
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+ AS D +W L +TL+G + +N + + Y + A +KIWD
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNR---YWLCAATGPSIKIWD 283
Query: 216 YQNKTCVQTLE 226
+ K V L+
Sbjct: 284 LEGKIIVDELK 294
Score = 120 bits (304), Expect = 7e-33
Identities = 49/228 (21%), Positives = 80/228 (35%), Gaps = 11/228 (4%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL-----PV 60
++ L + V P P M+ S + + +W ++ L V
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
+ ++GS D + +++ T F H+ V VA +++ S D
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD--NNTFASASLDRTVKVWQLGSASPN 178
IKLWN E H+ +V + +P + N S D+ VKVW L +
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP-NSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
GH +N V G SG D +WD + TL+
Sbjct: 209 TNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKHLYTLD 254
Score = 120 bits (303), Expect = 8e-33
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 70 NWIVTGSDDMQVCVFNYN----TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIK 124
+ +G D ++ + + + + H+ +V +A P P +L++S D I
Sbjct: 5 HHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTII 64
Query: 125 LWNWE----KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
+W Q+ GH+H+V +VI+ D S S D T+++W L + +
Sbjct: 65 MWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRR 123
Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
GH K V V + D ++SG+ D+ +K+W+ C T+
Sbjct: 124 FVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLG-VCKYTV 165
Score = 101 bits (254), Expect = 9e-26
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 114 LLTSSDDMLIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
+ D L+ + + +GH +V QI P+ + SAS D+T+ +W
Sbjct: 7 HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 66
Query: 171 QLGSASPNF-----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+L N+ L GH V+ V G + +SG+ D +++WD T +
Sbjct: 67 KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLRLWDLTTGTTTRRF 124
Query: 226 E 226
Sbjct: 125 V 125
Score = 99.9 bits (250), Expect = 3e-25
Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 17/167 (10%)
Query: 60 VRAAKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
V +F P IV+ D V V+N + + H+ Y+ V V P +
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW------- 170
D LW+ + +G + + +P + +A+ ++K+W
Sbjct: 234 GKDGQAMLWDLNE-GKHLYTLDGG-DIINALCFSP-NRYWLCAAT-GPSIKIWDLEGKII 289
Query: 171 --QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+L + + + + + G L +G D LV++W
Sbjct: 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQ--TLFAGYTDNLVRVWQ 334
Score = 77.5 bits (192), Expect = 4e-17
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V VWN + + + P + +G D Q +++ N + ++ +
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVI 150
D + + P + +L ++ IK+W+ E K + +
Sbjct: 257 -DIINALCFSPNRYWLCAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314
Query: 151 NPKDNNTFASASLDRTVKVWQLGS 174
+ D T + D V+VWQ+
Sbjct: 315 SA-DGQTLFAGYTDNLVRVWQVTI 337
Score = 59.1 bits (144), Expect = 1e-10
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCVDYYHGGDKP-YLISGADD 208
++ +S T ++ + TL+GH V + P ++S + D
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTP--QFPDMILSASRD 60
Query: 209 RLVKIWDYQNK-----TCVQTLE 226
+ + +W + L
Sbjct: 61 KTIIMWKLTRDETNYGIPQRALR 83
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 124 bits (313), Expect = 2e-34
Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 11/193 (5%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH----- 93
+ + + + + V A + TG V V++ +
Sbjct: 34 IGPGIPRHARQINTLNHGE-VVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQL 91
Query: 94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINP 152
+Y+R + P L+ + + +W+ + + I+P
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
D+ S D + VW L + + +GH G +C+D + G L +G D V+
Sbjct: 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT--KLWTGGLDNTVR 208
Query: 213 IWDYQNKTCVQTL 225
WD + +Q
Sbjct: 209 SWDLREGRQLQQH 221
Score = 116 bits (293), Expect = 2e-31
Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Query: 59 PVRAAKFVP-RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
P + + V D + + ++ H + V V + + T
Sbjct: 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTG 69
Query: 118 SDDMLIKLWN----WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
+K+W+ K+ Q +Y+ + P D T T+ +W L
Sbjct: 70 GKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLA 127
Query: 174 SASPN--FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ +P L + S D + +WD N+T V+ +
Sbjct: 128 APTPRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Score = 112 bits (283), Expect = 7e-30
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 8/167 (4%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
A P + D + V++ + F+ H+D C+ + L T
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 120 DMLIKLWNWEKAWACQQVFE-GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
D ++ W+ + +Q+ + T + + P A V+V +
Sbjct: 204 DNTVRSWDLRE---GRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDK- 258
Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
+ L HE V + + + G + +S D L+ W +
Sbjct: 259 YQLHLHESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGASIFQS 303
Score = 107 bits (270), Expect = 5e-28
Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 7/177 (3%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ VW+ V+ F+ + TG D V ++ + +
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F 223
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+ + + PT +L + +++ + K + H V+ + F
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--DKYQLHLHESCVLSLKFAY-CGKWF 280
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
S D + W+ + F V D Y+++G+ D+ +++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVYE 334
Score = 88.7 bits (221), Expect = 5e-21
Identities = 24/137 (17%), Positives = 31/137 (22%), Gaps = 14/137 (10%)
Query: 98 HSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
S V D LI A Q H V + I+
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR--HARQINTLNHGEVVCAVTISN-PTR 64
Query: 157 TFASASLDRTVKVW-----QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLV 211
+ VKVW S + + G LI G + +
Sbjct: 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTL 121
Query: 212 KIWDYQNKT--CVQTLE 226
IWD T L
Sbjct: 122 SIWDLAAPTPRIKAELT 138
Score = 85.6 bits (213), Expect = 5e-20
Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 5/134 (3%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V W+ + ++ + + + + P W+ G + V V + N ++ + H
Sbjct: 207 VRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLH 264
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
V + + +++ D L+ W + V+ I+ D+
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQSKESSSVLSCDISV-DDKYI 321
Query: 159 ASASLDRTVKVWQL 172
+ S D+ V+++
Sbjct: 322 VTGSGDKKATVYEV 335
Score = 52.5 bits (127), Expect = 2e-08
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)
Query: 138 FEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
F+G + D + A TL H + V V +
Sbjct: 3 FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN 61
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
++ +G VK+WD + +
Sbjct: 62 PTR--HVYTGGKG-CVKVWDISHPGNKSPVS 89
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 126 bits (317), Expect = 3e-34
Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 24/235 (10%)
Query: 15 SDRVKCCDLHPTEPWMLASLY-NGHVHVWN----------HETNQNVKSFEVCDLPVRAA 63
V P ++A+ + V V++ Q
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187
Query: 64 KFVP-RKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQPFLL 115
+ P ++++ SDD +C+++ N ++ + F H+ V VA H L
Sbjct: 188 SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247
Query: 116 TS-SDDMLIKLWN--WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
S +DD + +W+ + HT V + NP A+ S D+TV +W L
Sbjct: 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
Query: 173 GS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ + E H+ + V + ++ L S DR + +WD Q+ E
Sbjct: 308 RNLKLKLHSFESHKDEIFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361
Score = 117 bits (294), Expect = 5e-31
Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLP-------V 60
+L +P L S + + +W+ V
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 234
Query: 61 RAAKFVPR-KNWIVTGSDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL- 115
+ ++ + +DD ++ ++ N NT + H+ +AH+ V C++ +P F+L
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
T S D + LW+ FE H + Q+ +P + AS+ DR + VW L
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 176 SPNFTLEGHEKGVNCVDYYHGG------------DKPYLI-SGADDRLVKIWD 215
+ E E G + + HGG ++P++I S ++D ++++W
Sbjct: 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
Score = 100 bits (252), Expect = 3e-25
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 20/194 (10%)
Query: 5 LDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVW---NHETNQNVKSFEVCDLPV 60
+D K T + V+ H + S + + +W N+ T++ + + V
Sbjct: 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280
Query: 61 RAAKFVP-RKNWIVTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAVHPTQPFLL-TS 117
F P + + TGS D V +++ L+ HSFE+H D + V P +L +S
Sbjct: 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
D + +W+ K Q + GHT + NP + S S D
Sbjct: 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400
Query: 165 RTVKVWQLGSASPN 178
++VWQ+ N
Sbjct: 401 NIMQVWQMAENVYN 414
Score = 89.4 bits (222), Expect = 6e-21
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 21/149 (14%)
Query: 98 HSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEK---------AWACQQVFEGHTHYVMQ 147
H V P ++ T + + ++++ K GH
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186
Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSAS-------PNFTLEGHEKGVNCVDYYHGGDKP 200
+ NP N SAS D T+ +W + + GH V V +H +
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-WHLLHES 245
Query: 201 YLISGADDRLVKIWDYQNKT---CVQTLE 226
S ADD+ + IWD +N T++
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVD 274
Score = 60.9 bits (148), Expect = 3e-11
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 117 SSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL---- 172
++ + ++ H V + P++ A+ + V V+
Sbjct: 103 DNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHP 162
Query: 173 ------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
G P+ L GH+K + + + YL+S +DD + +WD
Sbjct: 163 SKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWD 210
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 123 bits (312), Expect = 6e-34
Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 29/223 (13%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86
+A N VH++ N+ V+ E+ + V + P N IVT D V+
Sbjct: 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81
Query: 87 NT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE---KAWACQQVFEGH 141
+ + RCV P + S +I + +E W C+ + +
Sbjct: 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI 141
Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQL--------------GSASPN----FTLEG 183
V+ + +P ++ A+ S D +++ GS P F
Sbjct: 142 RSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
V+ V + G + + D V + D K V TL
Sbjct: 201 SCGWVHGVCFSANGS--RVAWVSHDSTVCLADADKKMAVATLA 241
Score = 116 bits (292), Expect = 6e-31
Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 10/177 (5%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLT 116
P+ + + I ++ +V ++ + + H + H+ V V P ++T
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 117 SSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
D +W + + W V + P + FA S R + +
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQE 128
Query: 176 SPNF----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+ + + V +D++ L +G+ D +I+ K +
Sbjct: 129 NDWWVCKHIKKPIRSTVLSLDWHPNSV--LLAAGSCDFKCRIFSAYIKEVEERPAPT 183
Score = 105 bits (265), Expect = 4e-27
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 12/141 (8%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVIN 151
HSF + + C A + + + ++ + ++ W + H V +
Sbjct: 4 HSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 61
Query: 152 PKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
P D+N + DR VW L + P + + CV + K G+ R
Sbjct: 62 P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK--FAVGSGSR 118
Query: 210 LVKIWDYQNK----TCVQTLE 226
++ I ++ + C +
Sbjct: 119 VISICYFEQENDWWVCKHIKK 139
Score = 101 bits (254), Expect = 1e-25
Identities = 26/212 (12%), Positives = 59/212 (27%), Gaps = 27/212 (12%)
Query: 39 VHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF---- 92
+VW + + + + R ++ P + GS + + + +
Sbjct: 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE----------KAWA-------CQ 135
H + V + HP L S D ++++ W
Sbjct: 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM 195
Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
+V + + + + A S D TV + TL + V +
Sbjct: 196 FESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF-- 252
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
+ + +G D ++ Y + +
Sbjct: 253 ITESSLVAAGHDCF-PVLFTYDSAAGKLSFGG 283
Score = 92.3 bits (230), Expect = 3e-22
Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 12/191 (6%)
Query: 41 VWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD 100
+ + V F + + S D VC+ + + + + +
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 245
Query: 101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160
+ V + D L+ ++ A A + F G Q
Sbjct: 246 PLLAVTFITESSLVAAGHDCF-PVLFTYDSA-AGKLSFGGRLDVPKQSSQRGLTARERFQ 303
Query: 161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY--LISGADDRLVKIWDYQN 218
+ + + +L H+ V+ + GG + D + IWD
Sbjct: 304 NLDKKASSEGSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD--- 358
Query: 219 KTCVQTLESGI 229
V++LES +
Sbjct: 359 ---VRSLESAL 366
Score = 79.2 bits (196), Expect = 2e-17
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
V + + + V + LP+ A F+ + + G D +F Y++ SF
Sbjct: 226 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFGGR 284
Query: 99 SDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP---KD 154
D + + + D + A + H + V QI +
Sbjct: 285 LDVPKQSSQRGLTARERFQNLDKKASSEGSAA---AGAGLDSLHKNSVSQISVLSGGKAK 341
Query: 155 NNTFASASLDRTVKVWQLGS 174
+ F + +D + +W + S
Sbjct: 342 CSQFCTTGMDGGMSIWDVRS 361
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 124 bits (313), Expect = 9e-34
Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 20/203 (9%)
Query: 39 VHVWNHETNQNVKSFEV---CDLPVRAAKFVPRKNW-----------IVTGSDDMQVCVF 84
+WN + ++ FE+ + A + V + V+
Sbjct: 173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVY 232
Query: 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
H + + + T LL++SDD +++W+ Q F GH+
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQS 291
Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS 204
++ ++ S S+D +V++W L + + D
Sbjct: 292 IVSASWVG--DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ--DGQKYAV 347
Query: 205 GADDRLVKIWDYQN-KTCVQTLE 226
D V ++D + + ++L
Sbjct: 348 AFMDGQVNVYDLKKLNSKSRSLY 370
Score = 124 bits (313), Expect = 1e-33
Identities = 28/190 (14%), Positives = 64/190 (33%), Gaps = 6/190 (3%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ V+ P+ +F +++ SDD + +++ + F H
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
S + + +++ S D ++LW+ ++ + + I+ D +
Sbjct: 289 SQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQ-DGQKY 345
Query: 159 ASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI-WDY 216
A A +D V V+ L + +L G+ G+ Y S +D + + W+
Sbjct: 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL-YASYQSSQDNDYIFDLSWNC 404
Query: 217 QNKTCVQTLE 226
Sbjct: 405 AGNKISVAYS 414
Score = 107 bits (269), Expect = 2e-27
Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 36/201 (17%)
Query: 59 PVRAAKFVPR-KNWIVTGSDDMQVCVFNYNT--------------------LERFHSFEA 97
+ ++ + P ++ + G + + S
Sbjct: 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK 106
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
++ V C+A ++T ++ ++LWN K A V H ++ + N D
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNK-DGTH 163
Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKG---VNCVDYYHGGDKPY---------LISG 205
S ++ +W + S + E E G +N ++ G +
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223
Query: 206 ADDRLVKIWDYQNKTCVQTLE 226
+ ++ KT L
Sbjct: 224 GPKGAIFVYQITEKTPTGKLI 244
Score = 92.3 bits (230), Expect = 4e-22
Identities = 16/156 (10%), Positives = 49/156 (31%), Gaps = 6/156 (3%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
+ +W+ + F + +A +V + +++ S D V +++
Sbjct: 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK---VISCSMDGSVRLWSLKQNTLLALSI 327
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
+ + + D + +++ +K + + G+ ++ + P +
Sbjct: 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387
Query: 157 TFASASLDRTVKV-WQLGSASPNFTLEGHEKGVNCV 191
+S D + W + E V +
Sbjct: 388 YQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423
Score = 78.1 bits (193), Expect = 4e-17
Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 31/151 (20%)
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
+ SSDD+ + ++ ++ NP D
Sbjct: 7 GEDGASTVERETQEDDTNSIDSSDDLDGFVKILKE--------IVKLDNIVSSTWNPLDE 58
Query: 156 NTFASASLDRTVKVWQLGSASPN--------------------FTLEGHEKGVNCVDYYH 195
+ A + ++ ++ + V C+ + H
Sbjct: 59 SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
G+ +++G ++ +++W+ + L
Sbjct: 119 DGN--SIVTGVENGELRLWNKTGA-LLNVLN 146
Score = 33.0 bits (76), Expect = 0.062
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 39 VHVWNHETNQNV-KSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVF-NYNTLERFHSF 95
V+V++ + + +S + +P ++ + +D + N + ++
Sbjct: 354 VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413
Query: 96 EAHSDYVRCVA 106
V +
Sbjct: 414 SLQEGSVVAIP 424
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 121 bits (305), Expect = 5e-33
Identities = 42/211 (19%), Positives = 76/211 (36%), Gaps = 30/211 (14%)
Query: 39 VHVWNHETNQ------NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER- 91
+ + + V S + + K +++GS D V ++ E+
Sbjct: 7 LDIQVVKRGILEGHSDWVTS--IVAGF--SQKENEDSPVLISGSRDKTVMIWKLYEEEQN 62
Query: 92 ------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
+ H+ +V +A+ F ++SS D ++LW+ + F GH V
Sbjct: 63 GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEV 121
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCV--------DYYH 195
+ +P DN SA +R +K+W + + E H V+CV
Sbjct: 122 YSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
PY S D +K+W+ N T +
Sbjct: 181 QPFAPYFASVGWDGRLKVWN-TNFQIRYTFK 210
Score = 120 bits (304), Expect = 5e-33
Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 18/200 (9%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFE 96
+ +W+ T K F V + F P I++ + ++ ++N E
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
Query: 97 AHSDYVRCVAVHP----------TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
HSD+V CV P P+ + D +K+WN + F+ H V
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHESNVN 217
Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
+ I+P + A+ D+ + +W + + + +N + + ++ G
Sbjct: 218 HLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP--KLQWVAVGT 274
Query: 207 DDRLVKIWDYQNKTCVQTLE 226
D VKI++ ++
Sbjct: 275 DQG-VKIFNLMTQSKAPVCT 293
Score = 116 bits (294), Expect = 1e-31
Identities = 45/205 (21%), Positives = 73/205 (35%), Gaps = 20/205 (9%)
Query: 39 VHVWNHETNQNVKSFEVCDLP-------VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91
V +W + F + V + ++ S D + +++ T
Sbjct: 51 VMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT 110
Query: 92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVI 150
+ F H V VA P +L++ + IKLWN + E H+ +V +
Sbjct: 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170
Query: 151 NP---------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY 201
+P FAS D +KVW +T + HE VN + G Y
Sbjct: 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGK--Y 227
Query: 202 LISGADDRLVKIWDYQNKTCVQTLE 226
+ +G D+ + IWD N T Q
Sbjct: 228 IATGGKDKKLLIWDILNLTYPQREF 252
Score = 108 bits (273), Expect = 2e-28
Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 76 SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDMLIKLWN-- 127
+D+ + + E HSD+V + +Q L++ S D + +W
Sbjct: 2 ADNSSLDIQVVKR----GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY 57
Query: 128 ----WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
+ GH H+V + ++ +N S+S D+T+++W L + + G
Sbjct: 58 EEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVG 116
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN--KTCVQTLE 226
H+ V V + D ++S +R +K+W+ K E
Sbjct: 117 HQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAEKE 159
Score = 101 bits (254), Expect = 9e-26
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 19/168 (11%)
Query: 61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
A K P + + D ++ V+N N + ++F+AH V +++ P ++ T D
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKD 234
Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS------ 174
+ +W+ Q + QI NP A + D+ VK++ L +
Sbjct: 235 KKLLIWDILNL-TYPQREFDAGSTINQIAFNP-KLQWVAVGT-DQGVKIFNLMTQSKAPV 291
Query: 175 -------ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+ +G + + G L +G D +++ +
Sbjct: 292 CTIEAEPITKAEGQKGKNPQCTSLAWNALGK--KLFAGFTDGVIRTFS 337
Score = 76.9 bits (190), Expect = 7e-17
Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 15/150 (10%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ VWN Q +F+ + V P +I TG D ++ +++ L
Sbjct: 196 LKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE------------KAWACQQVFEGHTHYVM 146
+ +A +P ++ +D +K++N + + +G
Sbjct: 255 GSTINQIAFNPKLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCT 313
Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSAS 176
+ N + D ++ + +++
Sbjct: 314 SLAWNA-LGKKLFAGFTDGVIRTFSFETSA 342
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 120 bits (303), Expect = 9e-33
Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 31/217 (14%)
Query: 39 VHVWNHETNQNVKSFEVC---DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFH 93
V VW + + V V+ + P + + + S D V ++
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN--------------WEKAWACQQVFE 139
+ E H V +A P+ L + SDD +++W + +W C
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248
Query: 140 G-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---------NFTLEGHEKGVN 189
G H+ + I A+A D ++V+Q S + H + VN
Sbjct: 249 GFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
CV + + + L S +DD V W YQ +
Sbjct: 308 CVAW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343
Score = 119 bits (302), Expect = 1e-32
Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 12/179 (6%)
Query: 57 DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS---FEAHSDYVRCVAVHPTQPF 113
D + P + + D ++ ++ E H VR VA P +
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY 75
Query: 114 LLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
L ++S D +W + C EGH + V + P N A+ S D++V VW++
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEV 134
Query: 173 GSASPN---FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ--NKTCVQTLE 226
L H + V V ++ + L S + D VK++ + + C TLE
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLE 191
Score = 112 bits (282), Expect = 8e-30
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 25/213 (11%)
Query: 39 VHVWNHETNQN--VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF---H 93
+W + V + E + V++ + P N + T S D V V+ + + +
Sbjct: 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144
Query: 94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINP 152
+H+ V+ V HP+Q L ++S D +KL+ E W C EGH V + +P
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 153 KDNNTFASASLDRTVKVWQL-------GSASPNF--------TLEG-HEKGVNCVDYYHG 196
AS S DRTV++W+ G A TL G H + + + +
Sbjct: 205 -SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263
Query: 197 GDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
L + D ++++ + Q +
Sbjct: 264 TG--ALATACGDDAIRVFQEDPNSDPQQPTFSL 294
Score = 111 bits (281), Expect = 1e-29
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 87 NTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTH 143
++L AH D +A +P L + D I++W E + EGH
Sbjct: 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR 62
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPY 201
V ++ +P N ASAS D T +W+ TLEGHE V V + G+
Sbjct: 63 TVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--L 119
Query: 202 LISGADDRLVKIWDY---QNKTCVQTLE 226
L + + D+ V +W+ CV L
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLN 147
Score = 91.9 bits (229), Expect = 3e-22
Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 28/203 (13%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNV--KSFEVCDLPVRAAKF 65
L + + VK HP++ +LAS Y+ V ++ E + V + E + V + F
Sbjct: 144 SVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA----------------HSDYVRCVAVHP 109
P + + SDD V ++ HS + +A
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 110 TQPFLLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
L T+ D I+++ + + + H+ V + NPK+ AS
Sbjct: 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322
Query: 162 SLDRTVKVWQLGSASPNFTLEGH 184
S D V W+ H
Sbjct: 323 SDDGEVAFWKYQRPEGLHHHHHH 345
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 120 bits (304), Expect = 9e-33
Identities = 30/184 (16%), Positives = 71/184 (38%), Gaps = 19/184 (10%)
Query: 59 PVRAAKFVPR----KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV------- 107
P+ +F + +V ++ ++ +++ D
Sbjct: 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY 79
Query: 108 --HPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR 165
+ + P L + +I++ N C + + GH + + ++ +P+D N S S D
Sbjct: 80 DSNTSHPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 166 TVKVWQLGSASPNFT---LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222
+++W + + + +EGH V DY G+ ++S D +K+W +K +
Sbjct: 139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE--KIMSCGMDHSLKLWRINSKRMM 196
Query: 223 QTLE 226
++
Sbjct: 197 NAIK 200
Score = 116 bits (293), Expect = 3e-31
Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 47/237 (19%)
Query: 20 CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-----VCDLPVRAAKF----VPRKN 70
+P + A++ + V ++ + ++ + D +
Sbjct: 27 NWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP 86
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWE 129
+ + + N T++ + H + + + HP P LL S S D ++LWN +
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 130 KAWACQQVF---EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG--- 183
+F EGH V+ + S +D ++K+W++ S ++
Sbjct: 147 TD-TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
Query: 184 -------------------------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
H V+CV + GD ++S + + + W
Sbjct: 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD--LILSKSCENAIVCWK 257
Score = 100 bits (251), Expect = 3e-25
Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 14/144 (9%)
Query: 95 FEAHSDYVRCVAVHPT----QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVI 150
E H+ + V + P + + + L+ ++ + +
Sbjct: 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENF 72
Query: 151 NP--------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
+ A A +++ + GH +N + +H D L
Sbjct: 73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK-FHPRDPNLL 131
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
+S + D +++W+ Q T V
Sbjct: 132 LSVSKDHALRLWNIQTDTLVAIFG 155
Score = 97.7 bits (244), Expect = 3e-24
Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 56/259 (21%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVC---DLPVRAAK 64
+ + + HP +P +L S+ + + +WN +T+ V F V +A
Sbjct: 109 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNT----------------------------LERFHSFE 96
+ I++ D + ++ N+ F + +
Sbjct: 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN-------------WEKAWACQQVFEGHTH 143
H +YV CV +L+ S + I W E F+
Sbjct: 229 IHRNYVDCVRWLGD--LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC 286
Query: 144 YVMQIVINP-KDNNTFASASLDRTVKVWQLGSASPN----FTLEGHEKG--VNCVDYYHG 196
+ + + A + + VW L P+ TL H+ G + +
Sbjct: 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR- 345
Query: 197 GDKPYLISGADDRLVKIWD 215
D LI+ DD + WD
Sbjct: 346 -DSSILIAVCDDASIWRWD 363
Score = 72.7 bits (179), Expect = 3e-15
Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 135 QQVFEGHTHYVMQIVINP--KDNNTFASASL-DRTVKVWQLGSASPNFTLEGH-----EK 186
+ E H + + N K+ + A++ V +++ S L+ + ++
Sbjct: 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADE 70
Query: 187 GVNCVDYYHGG--DKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ + P L +++I + C++
Sbjct: 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 120 bits (304), Expect = 2e-32
Identities = 22/184 (11%), Positives = 49/184 (26%), Gaps = 15/184 (8%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS--DYVRCVAVHPTQPFLLT 116
S D + +++ + + + +
Sbjct: 25 IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAG 84
Query: 117 SSDDMLIKLWNWEK---AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
+ D+ ++L++ + A F H+ V + N K +N AS + + +W +
Sbjct: 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Query: 174 SASPNF---------TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
+ + V + + S IWD + K V
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH-VFASAGSSNFASIWDLKAKKEVIH 203
Query: 225 LESG 228
L
Sbjct: 204 LSYT 207
Score = 116 bits (293), Expect = 7e-31
Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 23/242 (9%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLP-------- 59
+ + S VK + + +LAS NG + +W+ S P
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 60 -VRAAKFVP-RKNWIVTGSDDMQVCVFNYNT------LERFHSFEAHSDYVRCVAVHPTQ 111
V + + + + +++ L + V HP
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 112 PFLLT----SSDDMLIKLWNWEKAWACQQVF-EGHTHYVMQIVINPKDNNTFASASLDRT 166
+ S +D I +W+ A Q +GH ++ + +D + S+ D T
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
V +W SA + + D +++ QN T +
Sbjct: 287 VLLWNPESAEQLSQFPARGNWCFKTKFAPEA-PDLFACASFDNKIEVQTLQNLTNTLDEQ 345
Query: 227 SG 228
Sbjct: 346 ET 347
Score = 95.5 bits (238), Expect = 3e-23
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 75 GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC 134
G+ V + ++ F +H V+ + S D ++LW+ A
Sbjct: 1 GAMGSMVKLAEFSRTATF--AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA-DS 57
Query: 135 QQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGV 188
++ + + +N A A + +++++ A+ H V
Sbjct: 58 EKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
V ++ L SG ++ + IWD T + + +
Sbjct: 117 KTVK-FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156
Score = 92.8 bits (231), Expect = 3e-22
Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 33/232 (14%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDL------PVRA 62
+ + D V + + + AS + +W+ + + V +
Sbjct: 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219
Query: 63 AKFVPR-KNWIVTGSDDMQ---VCVFNYNTLERF--HSFEAHSDYVRCVAVHPTQP-FLL 115
++ P+ + T + + +++ + H + + LL
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279
Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
+S D + LWN E A F ++ + P+ + FA AS D ++V L
Sbjct: 280 SSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL--Q 336
Query: 176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
+ TL+ E + + W+ ++ + S
Sbjct: 337 NLTNTLDEQE----------------TETKQQESETDFWNNVSREESKEKPS 372
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 119 bits (301), Expect = 3e-32
Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 9/194 (4%)
Query: 39 VHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA 97
V+VWN ++ E V + K+ +++ G + V +++ + + +
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
H V C++ + L + S I + A +GH+ V + D
Sbjct: 175 HQARVGCLSWNRHV--LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQ 231
Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI---SGADDRLVKIW 214
AS D V++W S+ P FT H V V + + L+ G D+ + W
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP--WQSNLLATGGGTMDKQIHFW 289
Query: 215 DYQNKTCVQTLESG 228
+ V T+++G
Sbjct: 290 NAATGARVNTVDAG 303
Score = 106 bits (267), Expect = 3e-27
Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 23/205 (11%)
Query: 37 GHVHVWNHET-NQNVKSF-----EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE 90
G +H + N + + EVC L + + +G +D V +++ +
Sbjct: 196 GAIHHHDVRIANHQIGTLQGHSSEVCGL-----AWRSDGLQLASGGNDNVVQIWDARSSI 250
Query: 91 RFHSFEAHSDYVRCVAVHPTQPFLLTS---SDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
+ H+ V+ VA P Q LL + + D I WN A + V
Sbjct: 251 PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAG-SQVTS 308
Query: 148 IVINPKDNNTFASA--SLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
++ +P + S D + +W + + H+ V G L
Sbjct: 309 LIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR--ILS 365
Query: 204 SGADDRLVKIWDYQNKTCVQTLESG 228
+ A D +K W + V+
Sbjct: 366 TAASDENLKFWRVYDGDHVKRPIPI 390
Score = 93.8 bits (234), Expect = 1e-22
Identities = 31/203 (15%), Positives = 77/203 (37%), Gaps = 12/203 (5%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
L+ L NG V +++ E+ +++ V ++ + +GS + +
Sbjct: 148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGC--LSWNRHVLSSGSRSGAIHHHDVRI 205
Query: 89 LER-FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
+ + HS V +A L + +D ++++W+ + + H V
Sbjct: 206 ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKA 264
Query: 148 IVINPKDNNTFASA--SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS- 204
+ P +N A+ ++D+ + W + + T++ V + + ++S
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSK--EIMST 321
Query: 205 -GADDRLVKIWDYQNKTCVQTLE 226
G D + IW Y + + ++
Sbjct: 322 HGFPDNNLSIWSYSSSGLTKQVD 344
Score = 85.0 bits (211), Expect = 2e-19
Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
D + + ++ + + + +WN + + YV + + D +
Sbjct: 90 IIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSF 148
Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
+ + V ++ + S + T+ GH+ V C+ + ++ L SG+ + D +
Sbjct: 149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVR 204
Query: 218 N-KTCVQTLE 226
+ TL+
Sbjct: 205 IANHQIGTLQ 214
Score = 75.7 bits (187), Expect = 3e-16
Identities = 25/161 (15%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT---GSDDMQVCVFNYNTLERFHSF 95
V +W+ ++ + + V+A + P ++ ++ G+ D Q+ +N T R ++
Sbjct: 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300
Query: 96 EAHSDYVRCVAVHPTQPFLLTS--SDDMLIKLWNWEKAWACQQV--FEGHTHYVMQIVIN 151
+A S V + P ++++ D + +W++ + + H V+ ++
Sbjct: 301 DAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQVDIPAHDTRVLYSALS 358
Query: 152 PKDNNTFASASLDRTVKVWQLGSASPNFT-LEGHEKGVNCV 191
P D ++A+ D +K W++ + + + +
Sbjct: 359 P-DGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSI 398
Score = 34.9 bits (81), Expect = 0.016
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+N +D+ +++ A +R V +W+ + + E+
Sbjct: 96 LNLLDW----SNLNVVAVALERNVYVWNADSGSVSALAETD 132
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 116 bits (294), Expect = 3e-31
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ +W+ E + V + + + + + P + +V+GS D V +++ T + +
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 99 SDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVIN 151
V VAV P ++ S D +++W+ E + + + GH V +V
Sbjct: 207 DG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 152 PKDNNTFASASLDRTVKVWQLGSASPNF------------TLEGHEKGVNCVDYYHGGDK 199
D + S SLDR+VK+W L +A+ T GH+ V V +
Sbjct: 266 R-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE- 323
Query: 200 PYLISGADDRLVKIWDYQNKTCVQTLE 226
Y++SG+ DR V WD ++ + L+
Sbjct: 324 -YILSGSKDRGVLFWDKKSGNPLLMLQ 349
Score = 116 bits (293), Expect = 4e-31
Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 25/202 (12%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNT---LERFHS 94
V +W+ T Q + + D V P +I GS D V V++ T +ER S
Sbjct: 189 VRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 95 ----FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN-----------WEKAWACQQVFE 139
H D V V +++ S D +KLWN + C+ +
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK 199
GH +V+ + ++ S S DR V W S +P L+GH V V +G
Sbjct: 308 GHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Query: 200 P----YLISGADDRLVKIWDYQ 217
+G+ D +IW Y+
Sbjct: 367 GPEYNVFATGSGDCKARIWKYK 388
Score = 115 bits (291), Expect = 8e-31
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 23/209 (11%)
Query: 37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
N N S DL +R+ F P ++ TG++D + +++ + +
Sbjct: 103 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
H + + P+ L++ S D +++W+ C V + ++P D
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDG-VTTVAVSPGDGK 220
Query: 157 TFASASLDRTVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYLISGADDR 209
A+ SLDR V+VW + L+ GH+ V V + G ++SG+ DR
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDR 278
Query: 210 LVKIWDYQNK------------TCVQTLE 226
VK+W+ QN TC T
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Score = 115 bits (290), Expect = 1e-30
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS------------------DY 101
V KF ++ TG + V+ + S Y
Sbjct: 67 VCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
+R V P FL T ++D LI++W+ E + +GH + + P + S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFP-SGDKLVSG 183
Query: 162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221
S DRTV++W L + + TL + GV V GD Y+ +G+ DR V++WD +
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIED-GVTTVAV-SPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 222 VQTLES 227
V+ L+S
Sbjct: 242 VERLDS 247
Score = 111 bits (280), Expect = 4e-29
Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 28/192 (14%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL-------ERFHSFEAHSDYVRCVAVHPTQ 111
P+ + + H H+ V CV
Sbjct: 17 PIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG 76
Query: 112 PFLLTSSDDMLIKLWN-----------------WEKAWACQQVFEGHTHYVMQIVINPKD 154
+L T + +++ + Y+ + +P D
Sbjct: 77 EYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-D 134
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
A+ + DR +++W + + L+GHE+ + +DY+ GD L+SG+ DR V+IW
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIW 192
Query: 215 DYQNKTCVQTLE 226
D + C TL
Sbjct: 193 DLRTGQCSLTLS 204
Score = 99 bits (250), Expect = 7e-25
Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 24/157 (15%)
Query: 92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN------WEKAWACQQVFEGHTHYV 145
++ HS + + + + + + HT V
Sbjct: 8 YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 67
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP----- 200
+ + D A+ ++T +V+++ S L + + P
Sbjct: 68 CCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 201 -----------YLISGADDRLVKIWDYQNKTCVQTLE 226
+L +GA+DRL++IWD +N+ V L+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162
Score = 91.5 bits (228), Expect = 7e-22
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 39 VHVWNHETNQNVKSFEVCDLP-------VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91
V VW+ ET V+ + + V + F +V+GS D V ++N
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Query: 92 F------------HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
++ H D+V VA ++L+ S D + W+ + + +
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQ 349
Query: 140 GHTHYVMQIVINPK-----DNNTFASASLDRTVKVWQLGSASPN 178
GH + V+ + + + N FA+ S D ++W+ +PN
Sbjct: 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 115 bits (289), Expect = 1e-30
Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNW 128
+ + D + + + D + C++ P FL+ S ++ W
Sbjct: 18 FGSATTDNHNPMKDIEVTS------SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV 71
Query: 129 EKAWACQ-QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
+ + + + HT V+ + + D + +AS D+T K+W L S + H+
Sbjct: 72 QDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAP 129
Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
V + + + +++G+ D+ +K WD ++ + L+
Sbjct: 130 VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168
Score = 98.9 bits (247), Expect = 1e-24
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 21/206 (10%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFV--PRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
+W+ +NQ ++ D PV+ ++ P + ++TGS D + ++ + +
Sbjct: 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP---K 153
++P + T+ +++ + + +++ H + I
Sbjct: 169 LPERCYCADVIYPMA-VVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQN 226
Query: 154 DNNTFASASLDRTVKVWQL---GSASPNFTLEGHEKGVNCVDYYHGG----------DKP 200
FA S++ V + + A NFT + H
Sbjct: 227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG 286
Query: 201 YLISGADDRLVKIWDYQNKTCVQTLE 226
L + D WD +T ++T E
Sbjct: 287 TLATVGSDGRFSFWDKDARTKLKTSE 312
Score = 91.9 bits (229), Expect = 4e-22
Identities = 25/205 (12%), Positives = 58/205 (28%), Gaps = 22/205 (10%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+ W+ ++ + ++ + A P + T + V E
Sbjct: 153 LKFWDTRSSNPMMVLQLPERCYCADVIYPMA-VVATAERGLIVYQLENQPSEFRRIESPL 211
Query: 99 SDYVRCVAVHPTQPFLLT----SSDDMLIKLWNWE--------------KAWACQQVFEG 140
RCVA+ + T S + + + ++
Sbjct: 212 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
+ V I +P + T A+ D W + + T E ++ ++ + H G+
Sbjct: 272 DIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGN-- 328
Query: 201 YLISGADDRLVKIWDYQNKTCVQTL 225
+ K ++ N +
Sbjct: 329 IFAYASSYDWSKGHEFYNPQKKNYI 353
Score = 89.2 bits (222), Expect = 4e-21
Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 23/208 (11%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP---RKNWIVTGSDDMQVCVFN 85
M S + H + + E + + F P N+++ GS V +
Sbjct: 17 MFGSATTDNHNPMKDIEVTSSPDD------SIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70
Query: 86 --YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH 143
+ + + H+ V V + T+S D K+W+ H
Sbjct: 71 VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--QAIQIAQHDA 128
Query: 144 YVMQI--VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY 201
V I + P + + + S D+T+K W S++P L+ E+ Y P
Sbjct: 129 PVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-----PM 182
Query: 202 LISGADDRLVKIWDYQNKT-CVQTLESG 228
+ +R + ++ +N+ + +ES
Sbjct: 183 AVVATAERGLIVYQLENQPSEFRRIESP 210
Score = 69.6 bits (171), Expect = 4e-14
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 21/166 (12%)
Query: 38 HVHVWNHETNQNVKSFEVCDLPVRAAKFVP----RKNWIVTGSDDMQVCVFNYNT---LE 90
V+ ++ ++ + R + GS + +V + N +
Sbjct: 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252
Query: 91 RFHSFEAHSDY------------VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
+F+ H V +A HP L T D W+ + A +
Sbjct: 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD-ARTKLKTS 311
Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
E + N + N FA AS K + + +
Sbjct: 312 EQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFYNPQKKNYIFLR 356
Score = 51.5 bits (124), Expect = 5e-08
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV----DYYHGG 197
+ + + F SA+ D + + + + C+ G
Sbjct: 2 SLFGTTSGFGTSGTSMFGSATTDNHNPMKDIE------VTSSPDDSIGCLSFSPPTLPGN 55
Query: 198 DKPYLISGADDRLVKIWDYQN 218
+LI+G+ V+ W+ Q+
Sbjct: 56 ---FLIAGSWANDVRCWEVQD 73
Score = 36.1 bits (84), Expect = 0.007
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS-F 95
G W+ + +K+ E D P+ A F N S +++ F++
Sbjct: 295 GRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY------DWSKGHEFYNPQ 348
Query: 96 EAHSDYVRCVA 106
+ + ++R A
Sbjct: 349 KKNYIFLRNAA 359
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 115 bits (289), Expect = 2e-30
Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 37/221 (16%)
Query: 39 VHVWNHETNQNVKSFEVCDLP-------------VRAAKFVPRK-NWIVTGSDDMQVCVF 84
+ +++ E + + + V ++ P + S D + V+
Sbjct: 68 IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW 127
Query: 85 NYNTLERFHSFEAHSDYVRCVAVHP---TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH 141
+ NTL+ F + V + P + + ++L + + +C + +GH
Sbjct: 128 DTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGH 185
Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----------------TLEGHE 185
++ + +P+ + A+AS D VK+W + AS H
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
VN + + G +L++ D +++W+ N
Sbjct: 246 GKVNGLCFTSDGL--HLLTVGTDNRMRLWNSSNGENTLVNY 284
Score = 115 bits (289), Expect = 2e-30
Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 15/178 (8%)
Query: 63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDM 121
A+ ++ + + V + H + + + P ++L+ D
Sbjct: 7 ARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDG 66
Query: 122 LIKLWNWE------------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV 169
+I L++ E + + H + V + P D F S+S D+T+KV
Sbjct: 67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126
Query: 170 WQLGSASPNFTLEGHEKGVNCVDY-YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
W + E+ V + G V++ D ++ +C L+
Sbjct: 127 WDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183
Score = 106 bits (266), Expect = 3e-27
Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 27/239 (11%)
Query: 15 SDRVKCCDLHP--TEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW 71
+ V + P T+ ++A V + + ++ + + A + PR ++
Sbjct: 141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200
Query: 72 IV-TGSDDMQVCVFNYNTLER----------------FHSFEAHSDYVRCVAVHPTQPFL 114
I+ T S D +V +++ + AH+ V + L
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 115 LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM----QIVINPKDNNTFASASLDRTVKVW 170
LT D ++LWN V G + ++ ++ F T+ V+
Sbjct: 261 LTVGTDNRMRLWNSS-NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319
Query: 171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
+ S L+GH K V+C + L SG+ D + W V +
Sbjct: 320 TVYSGEQITMLKGHYKTVDCCVFQSNFQ--ELYSGSRDCNILAWVPSLYEPVPDDDETT 376
Score = 103 bits (258), Expect = 6e-26
Identities = 24/231 (10%), Positives = 59/231 (25%), Gaps = 30/231 (12%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHET-NQNVKSFEVCDLPVRAAKFV 66
L + P ++LA+ + V +W+ + + + + + A
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 67 PRK---------------NWIVTGSDDMQVCVFNYNTLERF-----HSFEAHSDYVRCVA 106
++T D ++ ++N + E ++
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299
Query: 107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
+ I ++ + +GH V V + S S D
Sbjct: 300 SCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCN 357
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL-VKIWDY 216
+ W P + ++ + S +D+ W +
Sbjct: 358 ILAWVPSLYEP---VPDDDETTTKSQLNPAFE--DAWSSSDEEGGTSAWSH 403
Score = 51.1 bits (123), Expect = 8e-08
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 31 LASLYNGH-VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
+ G + V+ + + + + V F + +GS D + + +
Sbjct: 307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366
Query: 90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML-IKLWNWE 129
E + ++P +SSD+ W+
Sbjct: 367 E---PVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 112 bits (283), Expect = 9e-30
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 11/179 (6%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLT 116
P F ++ VT + QV ++ + + +F H V CV P ++T
Sbjct: 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVT 72
Query: 117 SSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
S D ++ W V + +P + + FA S R + V
Sbjct: 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQ 131
Query: 175 ASPNF----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
+ + + +D++ L +G DR + + E+ +
Sbjct: 132 ENDWWVSKHLKRPLRSTILSLDWHPNNV--LLAAGCADRKAYVLSAYVRDVDAKPEASV 188
Score = 111 bits (279), Expect = 3e-29
Identities = 35/225 (15%), Positives = 63/225 (28%), Gaps = 29/225 (12%)
Query: 30 MLAS-LYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86
+ V ++ + N + D V + P+ N IVT S D V+
Sbjct: 25 EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84
Query: 87 NTLERF---HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---AWACQQVFEG 140
+ + V P + S +I + +E+ W + +
Sbjct: 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN------CVDYY 194
++ + +P +N A+ DR V + E G C +Y
Sbjct: 145 LRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP 203
Query: 195 HGG---------DKPYLISGADDRLVKIWDYQN----KTCVQTLE 226
GG L D V I + T++
Sbjct: 204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK 248
Score = 99.1 bits (247), Expect = 1e-24
Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 11/140 (7%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-AWACQQVFEGHTHYVMQIVINPK 153
A + + +T++ ++L+ + W + F H V + P
Sbjct: 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP- 65
Query: 154 DNNTFASASLDRTVKVWQL---GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
+N + S DR V++ G+ L + V + DK G+ R+
Sbjct: 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK--FAVGSGARV 123
Query: 211 VKIWDYQNKT----CVQTLE 226
+ + ++ +
Sbjct: 124 ISVCYFEQENDWWVSKHLKR 143
Score = 69.0 bits (169), Expect = 6e-14
Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 14/190 (7%)
Query: 40 HVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHS 94
VW N E V A F P N + D V + + E+ +
Sbjct: 187 SVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----MQIV 149
+ +R + + + I L E WA + + T
Sbjct: 247 VKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTG 306
Query: 150 INPKDNNTFASASLDRTVKVWQL-GSASPNFTLEG-HEKGVNCVDYY--HGGDKPYLISG 205
++ + +L T + L GS+ +L H+ + + Y G+ S
Sbjct: 307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSS 366
Query: 206 ADDRLVKIWD 215
D V +W
Sbjct: 367 GTDGRVVLWT 376
Score = 53.2 bits (128), Expect = 2e-08
Identities = 17/154 (11%), Positives = 45/154 (29%), Gaps = 17/154 (11%)
Query: 35 YNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY--NT 88
++ V + + + + ++ LP+R+ + + G + + +
Sbjct: 225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY-SPILLQGNESG 283
Query: 89 LERFHSFEAHSDYVRCVAVHPT-------QPFLLTSSDDMLIKLWNWEKAWACQQVFEGH 141
+A + T P T+ + + + + H
Sbjct: 284 WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH 343
Query: 142 THYVMQIVI---NPKDNNTFASASLDRTVKVWQL 172
+ + + P + F S+ D V +W L
Sbjct: 344 QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 111 bits (279), Expect = 1e-29
Identities = 50/237 (21%), Positives = 74/237 (31%), Gaps = 39/237 (16%)
Query: 30 MLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVF 84
+LAS Y+ V +W E D V + + P + GS D + +
Sbjct: 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132
Query: 85 NYNTLERF---HSFEAHSDYVRCVAVHP-----------------TQPFLLTSSDDMLIK 124
Y ++ AH+ V+ P + D LIK
Sbjct: 133 TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIK 192
Query: 125 LWNWE--KAWACQQVFEGHTHYVMQIVINP---KDNNTFASASLDRTVKVWQLGSASPNF 179
LW E W +Q E H+ +V + P +T AS S D V +W AS N
Sbjct: 193 LWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT 252
Query: 180 ----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY---QNKTCVQTLESGI 229
L V V + + L D V +W C+ + G
Sbjct: 253 WSPKLLHKFNDVVWHVSWSITAN--ILAVSGGDNKVTLWKESVDGQWVCISDVNKGQ 307
Score = 106 bits (267), Expect = 9e-28
Identities = 38/194 (19%), Positives = 53/194 (27%), Gaps = 27/194 (13%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF--HSFEAHSDYVRCVAVHPTQP--FLL 115
+ A+ + T S D V +F+ + H V VA L
Sbjct: 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA 75
Query: 116 TSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQL- 172
+ S D + +W E W GH V + P D A S D + +
Sbjct: 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135
Query: 173 --GSASPNFTLEGHEKGVNCV---------------DYYHGGDKPYLISGADDRLVKIWD 215
G H G N V SG D L+K+W
Sbjct: 136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195
Query: 216 YQNKT---CVQTLE 226
+ Q LE
Sbjct: 196 EEEDGQWKEEQKLE 209
Score = 105 bits (263), Expect = 3e-27
Identities = 40/227 (17%), Positives = 65/227 (28%), Gaps = 39/227 (17%)
Query: 37 GHVHVWNHETNQN--VKSFEVCDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNT--LE 90
V +++ + + PV + N + + S D +V ++ E
Sbjct: 35 RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94
Query: 91 RFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNW--EKAWACQQVFEGHTHYVM 146
+ H H V V P L S D I L + E W +++ HT
Sbjct: 95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154
Query: 147 QIVINP----------------KDNNTFASASLDRTVKVWQLGSASPNF---TLEGHEKG 187
+ P FAS D +K+W+ LE H
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 188 VNCV----DYYHGGDKPYLISGADDRLVKIWDYQNKT----CVQTLE 226
V V + S + D V IW + + + L
Sbjct: 215 VRDVAWAPSIGLPTS--TIASCSQDGRVFIWTCDDASSNTWSPKLLH 259
Score = 102 bits (256), Expect = 3e-26
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINP- 152
+H D + + L T S D +K+++ GH V Q+
Sbjct: 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68
Query: 153 KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGADD 208
N AS S DR V +W+ G+ + GH+ VN V + + G L G+ D
Sbjct: 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG--LILACGSSD 126
Query: 209 RLVKIWDYQNKT---CVQTLE 226
+ + Y + +
Sbjct: 127 GAISLLTYTGEGQWEVKKINN 147
Score = 89.2 bits (222), Expect = 2e-21
Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 23/193 (11%)
Query: 15 SDR-VKCCDLHPTEPWMLASLYNGHVH-----VWNHETNQNVKSFEVCDLPVRAAKFVPR 68
SD + W + + N H W + +
Sbjct: 125 SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID------HPSGQKPNY 178
Query: 69 KNWIVTGSDDMQVCVFNYNT---LERFHSFEAHSDYVRCVAVHPTQPF----LLTSSDDM 121
+G D + ++ + EAHSD+VR VA P+ + + S D
Sbjct: 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238
Query: 122 LIKLWNWEKA---WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
+ +W + A ++ V + + N A + D V +W+
Sbjct: 239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVDGQW 297
Query: 179 FTLEGHEKGVNCV 191
+ KG V
Sbjct: 298 VCISDVNKGQGSV 310
Score = 79.2 bits (196), Expect = 9e-18
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCV 191
V H + ++ A+ S DR+VK++ + G L GHE V V
Sbjct: 5 INTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV 63
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
+ H L S + DR V IW +N T ++ E
Sbjct: 64 AWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98
Score = 33.0 bits (76), Expect = 0.063
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 37 GHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF 92
G V +W + + K + V + N + D +V ++ + ++
Sbjct: 238 GRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297
Query: 93 HSFEAHSDYVRCVAVHPTQ 111
+ V+ T+
Sbjct: 298 VCISDVNKGQGSVSASVTE 316
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 112 bits (282), Expect = 2e-29
Identities = 39/190 (20%), Positives = 63/190 (33%), Gaps = 23/190 (12%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYN--TLERFHSFEAHSDYVRCVAVHPTQP--FLL 115
+ A + T S D + +F T + + H V V + L
Sbjct: 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 73
Query: 116 TSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQL- 172
+ S D + +W E W+ V H+ V + P + AS D V V +
Sbjct: 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133
Query: 173 -GSASPNFTLEGHEKGVNCV-----------DYYHGGDKPYLISGADDRLVKIWDYQNKT 220
+ ++ H GVN ++ + ++G D LVKIW Y +
Sbjct: 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193
Query: 221 ----CVQTLE 226
TLE
Sbjct: 194 QTYVLESTLE 203
Score = 105 bits (265), Expect = 4e-27
Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 34/220 (15%)
Query: 37 GHVHVWNHE--TNQNVKSFEVCDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNT--LE 90
+ ++ E T++ + + + PV + K + + S D +V ++
Sbjct: 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 92
Query: 91 RFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNW-EKAWACQQVFEGHTHYVMQ 147
+ HS V V P + LL +S D + + + E + + H V
Sbjct: 93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 152
Query: 148 IVINP------------KDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCV 191
P K++ F + D VK+W+ S + + TLEGH V V
Sbjct: 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212
Query: 192 ----DYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTL 225
YL S + DR IW N+ +TL
Sbjct: 213 AWSPTVLLR---SYLASVSQDRTCIIWTQDNEQGPWKKTL 249
Score = 105 bits (263), Expect = 7e-27
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 10/142 (7%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVIN 151
AH++ + + L T S D IK++ E GH V ++
Sbjct: 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64
Query: 152 P-KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGA 206
K AS S D V +W+ G S H VN V + + G P L+ +
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--PLLLVAS 122
Query: 207 DDRLVKIWDYQ--NKTCVQTLE 226
D V + +++ T ++
Sbjct: 123 SDGKVSVVEFKENGTTSPIIID 144
Score = 103 bits (259), Expect = 3e-26
Identities = 47/224 (20%), Positives = 75/224 (33%), Gaps = 41/224 (18%)
Query: 30 MLAS-LYNGHVHVWNHETNQNV--KSFEVCDLPVRAAKFVPRKN-------------WIV 73
+L +G V V + N + + V +A + P V
Sbjct: 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 176
Query: 74 TGSDDMQVCVFNYN----TLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLW 126
TG D V ++ YN T + E HSD+VR VA PT +L + S D +W
Sbjct: 177 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Query: 127 NWE-KAWACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
+ + ++ E + + + N A + D V +W+ LE
Sbjct: 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE-------NLE 288
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
G + V GG SG K +D + + L
Sbjct: 289 GKWEPAGEVHQGGGG------SGGGGATSKEFDGPCQNEIDLLF 326
Score = 78.9 bits (195), Expect = 2e-17
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNC 190
+ + H + V++ A+ S D+T+K++++ + TL GHE V
Sbjct: 2 SMVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ--TLE 226
VD+ H L S + D V IW +N Q
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA 98
Score = 75.0 bits (185), Expect = 4e-16
Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 32/203 (15%)
Query: 39 VHVWNHETNQNVKSFEVCDL-----PVRAAKFVP---RKNWIVTGSDDMQVCVFNYNT-- 88
V +W + ++ L VR + P ++++ + S D ++ +
Sbjct: 184 VKIWKYNSDAQTYV-LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242
Query: 89 ---LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
+ E D + + + L S D + LW + E H
Sbjct: 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGG 302
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISG 205
S T K + + L ++ + S
Sbjct: 303 -------------GSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASY 349
Query: 206 -----ADDRLVKIWDYQNKTCVQ 223
+ ++ D K+ V
Sbjct: 350 TFAKFSTGSMLLTKDIVGKSGVS 372
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 110 bits (276), Expect = 3e-29
Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 27/192 (14%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFN--YNTLERFHSFEAHSDYVRCVAV-HPTQPF--- 113
+ A + T S D + +F T + + H V V HP F
Sbjct: 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--KFGTI 69
Query: 114 LLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQ 171
L + S D + +W E W+ V H+ V + P + AS D V V +
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129
Query: 172 L--GSASPNFTLEGHEKGVNCV-----------DYYHGGDKPYLISGADDRLVKIWDYQN 218
+ ++ H GVN ++ + ++G D LVKIW Y +
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 219 KT----CVQTLE 226
TLE
Sbjct: 190 DAQTYVLESTLE 201
Score = 107 bits (269), Expect = 3e-28
Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 33/228 (14%)
Query: 30 MLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVF 84
+LAS Y+G V +W E + + V V + ++ P + ++ S D +V V
Sbjct: 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV 128
Query: 85 NYNT--LERFHSFEAHSDYVRCVAVHPTQP-------------FLLTSSDDMLIKLWNWE 129
+ +AH+ V + P +T D L+K+W +
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188
Query: 130 ---KAWACQQVFEGHTHYVMQIVINP--KDNNTFASASLDRTVKVWQLGSASPNF----- 179
+ + + EGH+ +V + +P + AS S DRT +W + +
Sbjct: 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL 248
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLE 226
E + + G L D V +W E
Sbjct: 249 KEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWKENLEGKWEPAGE 294
Score = 105 bits (263), Expect = 2e-27
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVI-NP 152
AH++ + + + T S D IK++ E GH V ++ +P
Sbjct: 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 153 KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGADD 208
K AS S D V +W+ G S H VN V + + G P L+ + D
Sbjct: 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--PMLLVASSD 122
Query: 209 RLVKIWDYQ--NKTCVQTLE 226
V + +++ T ++
Sbjct: 123 GKVSVVEFKENGTTSPIIID 142
Score = 103 bits (260), Expect = 5e-27
Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 34/220 (15%)
Query: 37 GHVHVWN--HETNQNVKSFEVCDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNT--LE 90
+ ++ ET++ + + + PV + K + + S D +V ++
Sbjct: 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90
Query: 91 RFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNW-EKAWACQQVFEGHTHYVMQ 147
+ HS V V P + LL +S D + + + E + + H V
Sbjct: 91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150
Query: 148 IVINP------------KDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCV 191
P K++ F + D VK+W+ S + + TLEGH V V
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 192 ----DYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTL 225
Y+ S + DR IW N+ +TL
Sbjct: 211 AWSPTVLLRS---YMASVSQDRTCIIWTQDNEQGPWKKTL 247
Score = 80.0 bits (198), Expect = 5e-18
Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 28/176 (15%)
Query: 37 GHVHVWNHETNQNV--KSFEVCDLPVRAAKFVPRKN-------------WIVTGSDDMQV 81
G V V + N + + V +A + P VTG D V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 82 CVFNYN----TLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKA--- 131
++ YN T + E HSD+VR VA PT ++ + S D +W +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242
Query: 132 -WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL-GSASPNFTLEGHE 185
E + + + N A + D V +W+ E H+
Sbjct: 243 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQ 297
Score = 75.7 bits (187), Expect = 2e-16
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDY 193
+ H + V++ A+ S D+T+K++++ + TL GHE V VD+
Sbjct: 3 VIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
H L S + D V IW +N Q
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQ 91
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 108 bits (272), Expect = 2e-28
Identities = 24/201 (11%), Positives = 53/201 (26%), Gaps = 37/201 (18%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNT----LERFHSFEAHSDYVRCVAVHPTQP--F 113
V + + T S D + VF + E S+ AH + + +
Sbjct: 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI 73
Query: 114 LLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLD 164
+ ++S D +KLW + + W + + P A D
Sbjct: 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133
Query: 165 RTVKVW-------------QLGSASPNFTLEGHEKGVNCV----DYYHGGDKPYLISGAD 207
++++ + H + C+ + L A
Sbjct: 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP---EKLAVSAL 190
Query: 208 DRLVKIWDYQNKT--CVQTLE 226
++ + ++ L
Sbjct: 191 EQAIIYQRGKDGKLHVAAKLP 211
Score = 104 bits (261), Expect = 1e-26
Identities = 26/223 (11%), Positives = 59/223 (26%), Gaps = 37/223 (16%)
Query: 39 VHVWNHETNQNVKSFEVCDL---------PVRAAKFVPRKN--WIVTGSDDMQVCVFNYN 87
V +W + +Q S + + + KF P + +D + +++
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Query: 88 TLERFH-------------SFEAHSDYVRCVAVHP---TQPFLLTSSDDMLIKLWNWE-K 130
H C++ P + L S+ + I +
Sbjct: 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG 202
Query: 131 AWACQQVFEGHTHYVMQIVINP---KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
GH + I P + A+ D ++++++ L E
Sbjct: 203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI--TEKLSPLASEESL 260
Query: 188 VNCVDYYHGGDKPYLISGADD----RLVKIWDYQNKTCVQTLE 226
N + + D G D ++ + +
Sbjct: 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303
Score = 100 bits (250), Expect = 3e-25
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 17/144 (11%)
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---AWACQQVFEGHTHYVMQIVINP-K 153
H D V V + T S D IK++ +K W + H ++ I +
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 154 DNNTFASASLDRTVKVWQLGSASPN---------FTLEGHEKGVNCVDY--YHGGDKPYL 202
ASAS D+TVK+W+ TL + + V + H G L
Sbjct: 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG--LKL 127
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
+D +++++D + +++
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWT 151
Score = 94.7 bits (236), Expect = 3e-23
Identities = 27/229 (11%), Positives = 65/229 (28%), Gaps = 39/229 (17%)
Query: 37 GHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVFNYNT-- 88
H+ V+ + + + S+ D + A + + I + S D V ++ +
Sbjct: 33 QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92
Query: 89 -------LERFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNWE---------- 129
+ + + V P L +D +++L++
Sbjct: 93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL 152
Query: 130 --KAWACQQVFEGHTHYVMQIVINP--KDNNTFASASLDRTVKVWQL--GSASPNFTLEG 183
+ H + P A ++L++ + + G L G
Sbjct: 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG 212
Query: 184 HEKGVNCV----DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
H+ + + + +G D ++I+ K E
Sbjct: 213 HKSLIRSISWAPSIGRWYQ--LIATGCKDGRIRIFKITEKLSPLASEES 259
Score = 92.4 bits (230), Expect = 2e-22
Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 32/216 (14%)
Query: 37 GHVHVWNHETNQNVKSFEVCDL-------------PVRAAKFVP---RKNWIVTGSDDMQ 80
G + +++ +++S+ + + P + + +
Sbjct: 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193
Query: 81 VCVFNYNT--LERFHSFEAHSDYVRCVAVHP----TQPFLLTSSDDMLIKLWNWEKAWAC 134
+ L H +R ++ P + T D I+++
Sbjct: 194 IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK---ITEK 250
Query: 135 QQVFEGHTHYVMQIVINP-KDNNTFASASLD----RTVKVWQLGSASPNFTLEGHEKGVN 189
+ + D + A D ++ + H V
Sbjct: 251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
V + G L S DD V++W + +
Sbjct: 311 SVSWNLTGT--ILSSAGDDGKVRLWKATYSNEFKCM 344
Score = 72.3 bits (178), Expect = 3e-15
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 135 QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNC 190
Q GH V +V + A+ S D+ +KV++L + N+ + H+ +
Sbjct: 4 QPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA 62
Query: 191 VDYYHGGDKPYLISGADDRLVKIWD 215
+D+ + S + D+ VK+W+
Sbjct: 63 IDWASPEYGRIIASASYDKTVKLWE 87
Score = 69.2 bits (170), Expect = 5e-14
Identities = 17/159 (10%), Positives = 43/159 (27%), Gaps = 16/159 (10%)
Query: 39 VHVWNHETNQN--VKSFEVCDLPVRAAKFVP----RKNWIVTGSDDMQVCVFNYNTLERF 92
+ + + +R+ + P I TG D ++ +F +
Sbjct: 194 IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE--KL 251
Query: 93 HSFEAHSDYVRCVAVHPTQPF------LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
+ + S+ + +L + + + H V
Sbjct: 252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVW 310
Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
+ N +SA D V++W+ ++ +
Sbjct: 311 SVSWNL-TGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 348
Score = 55.0 bits (133), Expect = 3e-09
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ----VCVFNYNTLERF 92
G + ++ + + E + G D + + +E
Sbjct: 240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW--NWEKAWACQQVFEGH 141
+ H+ V V+ + T L ++ DD ++LW + + C V
Sbjct: 300 SEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 108 bits (273), Expect = 3e-28
Identities = 29/215 (13%), Positives = 66/215 (30%), Gaps = 31/215 (14%)
Query: 39 VHVWNHETNQNVKSFEV-------------CDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85
++++ E + A + + +I+ G D ++ ++
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 86 YNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
+ E S + H + + P + +TSS D L + + +E
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYETDCP- 261
Query: 145 VMQIVINP-------------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+ VI P KD T ++ + + ++GH +N V
Sbjct: 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV 321
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
G SG +D +++ ++ +
Sbjct: 322 AISPQGT--SYASGGEDGFIRLHHFEKSYFDFKYD 354
Score = 107 bits (270), Expect = 7e-28
Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 24/207 (11%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
+++ ++ + P+ K+ + + + S D V+ ER + + H
Sbjct: 14 ENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH 73
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
+ + + V + +T S D IKLW+ C ++ V ++ +P N F
Sbjct: 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-QCVATWKSPV-PVKRVEFSP-CGNYF 130
Query: 159 ASASLDR-----TVKVWQL-----------GSASPNFTLEGHEKG--VNCVDYYHGGDKP 200
+ + ++ ++++ S P + HE + G
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-- 188
Query: 201 YLISGADDRLVKIWDYQN-KTCVQTLE 226
Y+I+G D + +D N V +++
Sbjct: 189 YIIAGHKDGKISKYDVSNNYEYVDSID 215
Score = 107 bits (269), Expect = 8e-28
Identities = 24/218 (11%), Positives = 65/218 (29%), Gaps = 33/218 (15%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ-----VCVFNYNTLERFH 93
+ +W+ Q V +++ +PV+ +F P N+ + D++ + ++ H
Sbjct: 98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156
Query: 94 SFEAHS-------------DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG 140
S D +++ D I ++ + +
Sbjct: 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216
Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV----DYYH- 195
H + + +P D F ++S D + + + E +N
Sbjct: 217 HEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDC-PLNTAVITPLKEFI 274
Query: 196 ---GGDKPYLI----SGADDRLVKIWDYQNKTCVQTLE 226
GG + + + + + + + ++
Sbjct: 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312
Score = 96.9 bits (242), Expect = 6e-24
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 10/162 (6%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++ + + H + V + L + S D +W
Sbjct: 5 HHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG 64
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
+GHT + I ++ + S D ++K+W + + T + V V
Sbjct: 65 -ERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRV 121
Query: 192 DYYHGGDKPYLISGADDRL-----VKIWDYQNKTCVQTLESG 228
++ G+ Y ++ D+ + + I++ + + L
Sbjct: 122 EFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKV 161
Score = 92.7 bits (231), Expect = 2e-22
Identities = 21/165 (12%), Positives = 59/165 (35%), Gaps = 18/165 (10%)
Query: 35 YNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93
+G + ++ N S ++ + + +F P + +T S D + + +TL+
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254
Query: 94 SFEAHSDYVRCVAVHPTQPFLL--------------TSSDDMLIKLWNWEKAWACQQVFE 139
+E + + P + F++ + + ++ + +
Sbjct: 255 KYETDCP-LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH-KIFEEEIGRVQ 312
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
GH + + I+P ++AS D +++ + +F +
Sbjct: 313 GHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSYFDFKYDVE 356
Score = 68.4 bits (168), Expect = 9e-14
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
++ ++ GS L GHE+ + V Y GD L S + D +W
Sbjct: 3 SSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGD--LLFSCSKDSSASVWY 60
Query: 216 YQNKTCVQTLE 226
N + TL+
Sbjct: 61 SLNGERLGTLD 71
Score = 65.7 bits (161), Expect = 8e-13
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS--------------DDMQVCVF 84
+ + T Q +K +E D P+ A P K +I+ G + +
Sbjct: 242 SFLVDVSTLQVLKKYET-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300
Query: 85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
+ E + H + VA+ P + +D I+L ++EK++ ++
Sbjct: 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY-FDFKYDVEKAA 359
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 107 bits (269), Expect = 8e-28
Identities = 25/216 (11%), Positives = 75/216 (34%), Gaps = 27/216 (12%)
Query: 36 NGHVHVWNHETNQNVKSFEV-CDLPVRAAKFV---PRKNWIVTGSDDMQVCVFNYNTLER 91
G + ++ + E+ P++ F ++ ++ TG + ++N E
Sbjct: 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM 102
Query: 92 F-HSFEAHSDYVRCV------AVHPTQPFLLTSSDDMLIKLWNW---EKAWACQQVFEGH 141
+S + H + + + + P ++T S D +K+W+ + A + +G
Sbjct: 103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162
Query: 142 THY-----VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH- 195
N + + + +K++ L + + + GV +++
Sbjct: 163 NKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRK 220
Query: 196 GGDKPYLISGADDRLVKIWDYQNK-----TCVQTLE 226
L++ + + ++D + + + +
Sbjct: 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK 256
Score = 99.0 bits (247), Expect = 9e-25
Identities = 28/252 (11%), Positives = 71/252 (28%), Gaps = 45/252 (17%)
Query: 9 RKLTARSDRVKCCDLHPTEPW-----MLAS-LYNGHVHVWNHETNQNVKSF--------- 53
+ + + D + + +G V VW+ + +
Sbjct: 105 YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164
Query: 54 EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP---T 110
C + + + G D+ + +F+ + V + +
Sbjct: 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MALRWETNIKNGVCSLEFDRKDIS 223
Query: 111 QPFLLTSSDDMLIKLWNWEKAWA----CQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
L+ +S + +++ + H V Q+ P++ F +A
Sbjct: 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG 283
Query: 167 VKVWQL-------------------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLI-SGA 206
+ +W+ GS S + + ++ +D+ DK L +
Sbjct: 284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW--SPDKRGLCVCSS 341
Query: 207 DDRLVKIWDYQN 218
D+ V++
Sbjct: 342 FDQTVRVLIVTK 353
Score = 86.3 bits (214), Expect = 4e-20
Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 15/146 (10%)
Query: 93 HSFEAHSDYVRCVAVHPTQPFLLTS----SDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
H + + V P +T +I+L+ + + + E ++
Sbjct: 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-DLKLLREIEKAKPIKC 70
Query: 149 V----INPKDNNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGG----DK 199
+ A+ + +W L + P ++++GH++ +N +D G
Sbjct: 71 GTFGATSL-QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA 129
Query: 200 PYLISGADDRLVKIWDYQNKTCVQTL 225
P +++G+ D VK+WD + K
Sbjct: 130 PEIVTGSRDGTVKVWDPRQKDDPVAN 155
Score = 85.9 bits (213), Expect = 5e-20
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 22/187 (11%)
Query: 60 VRAAKFVPRKNWIVT----GSDDMQVCVFNYNT--LERFHSFEAHSDYVRCV---AVHPT 110
V K+VP VT + ++ L+ E + ++C A
Sbjct: 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE-KAKPIKCGTFGATSLQ 79
Query: 111 QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLDR 165
Q +L T + +WN E +GH + I + S D
Sbjct: 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139
Query: 166 TVKVWQLGSASPNF----TLEGHEKG-VNCVDYYHGG--DKPYLISGADDRLVKIWDYQN 218
TVKVW ++G K V + + ++ + +G D+ +K++D +N
Sbjct: 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199
Query: 219 KTCVQTL 225
Sbjct: 200 MALRWET 206
Score = 57.4 bits (139), Expect = 5e-10
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFAS----ASLDRTVKVWQLGSASPNFTLE-G 183
EK + +G + V P + F + A ++++++ E
Sbjct: 5 EKPQIIAHIQKGFNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE 63
Query: 184 HEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQN-KTCVQTLE 226
K + C + + YL +G + IW+ + + V +++
Sbjct: 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK 108
Score = 33.9 bits (78), Expect = 0.035
Identities = 5/51 (9%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 180 TLEGHEKGVNCVDYYHGGDK--PYLISGADDRLVKIWDYQNKTCVQTLESG 228
+G V + K ++++++ Q+ E
Sbjct: 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE 63
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 107 bits (269), Expect = 1e-27
Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 16/183 (8%)
Query: 59 PVRAAKFVPR-KNWIVTGSDDMQVCVFN-------YNTLERFHSFEAHSDYVRCVAVHPT 110
PV + P N I +GS+D V V+ E + E H+ V VA HPT
Sbjct: 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT 142
Query: 111 -QPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRTV 167
Q LL++ D +I +W+ A + H + + + D ++ D+ V
Sbjct: 143 AQNVLLSAGCDNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRV 200
Query: 168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTCVQT 224
+V + + + +G V + L +G +R V +WD ++ +
Sbjct: 201 RVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260
Query: 225 LES 227
L+
Sbjct: 261 LQE 263
Score = 97.1 bits (242), Expect = 9e-24
Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 13/170 (7%)
Query: 70 NWIVTGSDDMQVCVFNY--NTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLW 126
+G V + H+ V +A P ++ S S+D + +W
Sbjct: 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109
Query: 127 N------WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
EGHT V + +P N SA D + VW +G+ + T
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169
Query: 181 L--EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
L + H + VD+ G + + D+ V++ + + T V +
Sbjct: 170 LGPDVHPDTIYSVDWSRDGA--LICTSCRDKRVRVIEPRKGTVVAEKDRP 217
Score = 96.7 bits (241), Expect = 1e-23
Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 20/236 (8%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLP-------V 60
+ + V P ++AS + V VW V + V
Sbjct: 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134
Query: 61 RAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFHSF--EAHSDYVRCVAVHPTQPFLLTS 117
+ P +N +++ D + V++ T + + H D + V + TS
Sbjct: 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTH-YVMQIVINPKDNNTFAS---ASLDRTVKVWQLG 173
D +++ K + H + V + + +R V +W
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTK 253
Query: 174 SASPNFTLE--GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLE 226
+L+ GV + + G D ++ ++ + + L
Sbjct: 254 HLEEPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLS 308
Score = 87.8 bits (218), Expect = 2e-20
Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 10/138 (7%)
Query: 97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKD 154
V S + L + + + GHT V+ I P +
Sbjct: 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN 93
Query: 155 NNTFASASLDRTVKVWQL-------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD 207
+N AS S D TV VW++ P TLEGH K V V ++ + L+S
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGC 152
Query: 208 DRLVKIWDYQNKTCVQTL 225
D ++ +WD V TL
Sbjct: 153 DNVILVWDVGTGAAVLTL 170
Score = 80.5 bits (199), Expect = 6e-18
Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 14/225 (6%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLP--VRAAKFV 66
L + RV HPT +L S + + VW+ T V + P + + +
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 67 PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRC--VAVHPTQPFLLT---SSDDM 121
I T D +V V + + R L T +
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Query: 122 LIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
+ LW+ K + + V+ +P N + D +++ +++ S +P
Sbjct: 246 QVALWD-TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL 304
Query: 180 -TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
L + + + + + + + + C
Sbjct: 305 HYLSMFSSKESQRGMGYMPKR--GLEVNKCEIARFYKLHERKCEP 347
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 108 bits (271), Expect = 2e-27
Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 27/192 (14%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYN--TLERFHSFEAHSDYVRCVAV-HPTQPF--- 113
+ A + T S D + +F T + + H V V HP F
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--KFGTI 69
Query: 114 LLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQ 171
L + S D + +W E W+ V H+ V + P + AS D V V +
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 172 L--GSASPNFTLEGHEKGVNCV-----------DYYHGGDKPYLISGADDRLVKIWDYQN 218
+ ++ H GVN ++ + ++G D LVKIW Y +
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 219 KT----CVQTLE 226
TLE
Sbjct: 190 DAQTYVLESTLE 201
Score = 107 bits (268), Expect = 5e-27
Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 32/218 (14%)
Query: 30 MLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVF 84
+LAS Y+G V +W E + + V V + ++ P + ++ S D +V V
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 85 NYNT--LERFHSFEAHSDYVRCVAVHPTQP-------------FLLTSSDDMLIKLWNWE 129
+ +AH+ V + P +T D L+K+W +
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188
Query: 130 ---KAWACQQVFEGHTHYVMQIVINP--KDNNTFASASLDRTVKVWQLGSASPNF----- 179
+ + + EGH+ +V + +P + AS S DRT +W + +
Sbjct: 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 248
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
E + + G L D V +W
Sbjct: 249 KEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWKEN 284
Score = 105 bits (262), Expect = 3e-26
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVI-NP 152
AH++ + + L T S D IK++ E GH V ++ +P
Sbjct: 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 153 KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGADD 208
K AS S D V +W+ G S H VN V + + G P L+ + D
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--PLLLVASSD 122
Query: 209 RLVKIWDYQ--NKTCVQTLE 226
V + +++ T ++
Sbjct: 123 GKVSVVEFKENGTTSPIIID 142
Score = 105 bits (262), Expect = 4e-26
Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 24/180 (13%)
Query: 70 NWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKL 125
+ + S D +V ++ + HS V V P + LL +S D + +
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 126 WNW-EKAWACQQVFEGHTHYVMQIVINP------------KDNNTFASASLDRTVKVWQL 172
+ E + + H V P K++ F + D VK+W+
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 173 GSASPNF----TLEGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKT--CVQTL 225
S + + TLEGH V V + + YL S + DR IW N+ +TL
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 247
Score = 75.4 bits (185), Expect = 5e-16
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDY 193
+ H + V++ A+ S D+T+K++++ + TL GHE V VD+
Sbjct: 3 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
H L S + D V IW +N Q
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQ 91
Score = 64.2 bits (156), Expect = 3e-12
Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 27/159 (16%)
Query: 39 VHVWNHETNQNVKSFEVCDL-----PVRAAKFVP---RKNWIVTGSDDMQVCVFNYNT-- 88
V +W + ++ L VR + P ++++ + S D ++ +
Sbjct: 182 VKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 89 ---LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
+ E D + + + L S D + LW + E H
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGG 300
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
S T K + + L
Sbjct: 301 -------------GSGGGGATSKEFDGPCQNEIDLLFSE 326
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 106 bits (266), Expect = 4e-27
Identities = 28/235 (11%), Positives = 72/235 (30%), Gaps = 37/235 (15%)
Query: 10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPR 68
+ + R V + ++ G + +W+ N ++S+ D P+ +
Sbjct: 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268
Query: 69 KN----WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ------------- 111
+V GS + ++N+ ++F + P +
Sbjct: 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328
Query: 112 ------------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA 159
LLT I +++ + + + + + + T
Sbjct: 329 LNALSTISVSNDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIP------TQV 381
Query: 160 SASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
+A+L ++ + S H +N + + P L++ + L+ I+
Sbjct: 382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436
Score = 102 bits (256), Expect = 1e-25
Identities = 26/256 (10%), Positives = 68/256 (26%), Gaps = 40/256 (15%)
Query: 3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCD--LP 59
+R + V+ E +L +L V +++ T + ++ E
Sbjct: 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA 216
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA-HSDYVRCVAVHPTQP----FL 114
V + ++ G+ + +++ S+ + V V +
Sbjct: 217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276
Query: 115 LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP---------------------- 152
+ S + +WN+ K CQ F P
Sbjct: 277 VGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335
Query: 153 --KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
++ + ++ ++ L S + + + + P ++ L
Sbjct: 336 SVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVF-------IPTQVTANLTML 388
Query: 211 VKIWDYQNKTCVQTLE 226
++ + V
Sbjct: 389 LRKMKRTSTHSVDDSL 404
Score = 101 bits (252), Expect = 5e-25
Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 29/213 (13%)
Query: 41 VWNHETNQNVKSFEVCDL-----PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE----- 90
+WN + + + V +P + S D Q+ V N +
Sbjct: 90 IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149
Query: 91 -----------RFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
+F + VR A + L+ ++ + +++ + Q+
Sbjct: 150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI-RTLERLQII 208
Query: 139 EGHTHY--VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG-VNCVDY-- 193
E + V I I+ + + + +W + + + + V+
Sbjct: 209 ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267
Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
++G + ++ G+ + IW++ C
Sbjct: 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI 300
Score = 99.9 bits (249), Expect = 1e-24
Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)
Query: 59 PVRAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFHSFEA-----HSDYVRCVAVHPTQP 112
+ ++ P +++TGSD + ++N + + + S V + + P
Sbjct: 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124
Query: 113 FLLTSSDDMLIKLWNWE--------KAWACQQV-------FEGHTHYVMQIVINPKDNNT 157
SS D I + K C+ + F + + V ++ +
Sbjct: 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184
Query: 158 FASASLDRTVKVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
+ + V ++ + + +E V+ + LI G ++ IWD
Sbjct: 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC--VLILGTTRGIIDIWD 242
Query: 216 YQNKTCVQTLESG 228
+ +++ G
Sbjct: 243 IRFNVLIRSWSFG 255
Score = 80.2 bits (198), Expect = 1e-17
Identities = 14/150 (9%), Positives = 34/150 (22%), Gaps = 18/150 (12%)
Query: 93 HSFEAHSDYVR----CVAVHPT----QPFLLTSSDDMLIKLWNWEKAWACQQVF-EGHTH 143
H E + + + P + F + N E +
Sbjct: 7 HHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPNMGNLR--GKLIATLMENEPN 64
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-----GHEKGVNCVDYYHGGD 198
+ ++P + + S +K+W L V + D
Sbjct: 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124
Query: 199 KPYLISGADDRLVKIWDYQNKTCVQTLESG 228
+ D + + + ++
Sbjct: 125 --AFAVSSKDGQIIVLKVNHYQQESEVKFL 152
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 97.9 bits (244), Expect = 3e-24
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 72 IVTGSDDMQVCVFNYNT------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM---L 122
I TG ++ V + +T E HS +S+ +R V P L + D
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 123 IKLWN------------WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
I L+ + H+ +VM + N T SA D ++ W
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFW 318
Query: 171 QLGSASPNFTLEGHEKGV----NCVDYYHGGDKPYLISGADD---RLVKIWD 215
+ + TL H + + + GD L L K W
Sbjct: 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGD--SLAEPGVFDVKFLKKGWR 368
Score = 97.1 bits (242), Expect = 7e-24
Identities = 22/230 (9%), Positives = 61/230 (26%), Gaps = 46/230 (20%)
Query: 39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRK---NWIVTGSDDMQVCVFNYNTL------ 89
V + + + + + +V ++ ++
Sbjct: 105 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164
Query: 90 ------------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-----KAW 132
S S + V + + T ++ +++ +
Sbjct: 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF 223
Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT---VKVWQLGSASPNFTLE------- 182
Q +++ + + +P + A A + + +++ +L
Sbjct: 224 ESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282
Query: 183 ------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
H V + + G+ L S D ++ WD + K + TL
Sbjct: 283 ASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLN 330
Score = 93.7 bits (233), Expect = 2e-22
Identities = 16/185 (8%), Positives = 47/185 (25%), Gaps = 33/185 (17%)
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNW 128
+D V + HS + + L+ + +W +
Sbjct: 96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155
Query: 129 E-----------------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW- 170
+ + + + + I+ A+ + TV++
Sbjct: 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 213
Query: 171 -----QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTCV 222
L + ++ + + V + G L D + +++ + +
Sbjct: 214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQG--SLLAIAHDSNSFGCITLYETEFGERI 271
Query: 223 QTLES 227
+L
Sbjct: 272 GSLSV 276
Score = 77.9 bits (192), Expect = 6e-17
Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 51/214 (23%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNT------LERFHSFEAHS-------------- 99
+ + ++ V+ S D + V++ ++ +S H
Sbjct: 19 IFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIER 76
Query: 100 -----DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
V + F + +D K+ EK + H+ + ++ +
Sbjct: 77 DAFELCLVATTSFSGDLLFYRITREDETKKVIF-EKLDLLDSDMKKHSFWALKWGASNDR 135
Query: 155 NN--TFASASLDRTVKVWQL---GSASPNF---------------TLEGHEKGVNCVDYY 194
+ + T +W+ S + + + VD
Sbjct: 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 195
Query: 195 HGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
G + +G ++ V+I + + ES
Sbjct: 196 ERG---LIATGFNNGTVQISELSTLRPLYNFESQ 226
Score = 75.2 bits (185), Expect = 5e-16
Identities = 27/206 (13%), Positives = 62/206 (30%), Gaps = 51/206 (24%)
Query: 39 VHVWNHETNQNVKSFEVCDL------PVRAAKFVPRKNWIVTGSDDM---QVCVFNYNTL 89
V + T + + +FE +R+ KF P+ + + D + ++
Sbjct: 209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268
Query: 90 ERFHSFE-------------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
ER S AHS +V ++ + + L ++ D ++ W+ +
Sbjct: 269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERIT 327
Query: 137 VFEGHTHYVMQ----IVINPKDNNTFASASLD---RTVKVWQLGSASPNFTLEGHEKGVN 189
H + + ++ ++ A + K W+ G +
Sbjct: 328 TLNMHCDDIEIEEDILAVDE-HGDSLAEPGVFDVKFLKKGWRSGMGADLNES-------- 378
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWD 215
L DR ++ +
Sbjct: 379 ------------LCCVCLDRSIRWFR 392
Score = 69.8 bits (171), Expect = 3e-14
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 32/147 (21%)
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
+AH + V+ + ++ S D +K+W+ + + ++H+V + ++ D
Sbjct: 13 KAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 70
Query: 156 N-----------------------TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV- 191
+ D T KV + ++ H
Sbjct: 71 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 130
Query: 192 ---DYYHGGDKPYLISGADDRLVKIWD 215
D L++ IW
Sbjct: 131 ASNDRLLSH---RLVATDVKGTTYIWK 154
Score = 54.0 bits (130), Expect = 8e-09
Identities = 11/116 (9%), Positives = 28/116 (24%), Gaps = 26/116 (22%)
Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYY 194
+ H + + S S D +KVW + + V+ +
Sbjct: 10 NAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 66
Query: 195 H----------GGDKPYLISGA------------DDRLVKIWDYQNKTCVQTLESG 228
H + + + + +D K+ + ++
Sbjct: 67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 122
Score = 47.4 bits (113), Expect = 1e-06
Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 36/152 (23%)
Query: 37 GHVHVWNHETNQNVKSFEVCDLP-------------VRAAKFVPRKNWIVTGSDDMQVCV 83
G + ++ E + + S V V + F + + D ++
Sbjct: 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317
Query: 84 FNYNTLERFHSFEAHSDYVR----CVAVHPTQPFLLT-SSDDMLIKLWNWEKAWACQQVF 138
++ T ER + H D + +AV L D+ W
Sbjct: 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW---------- 367
Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
+ + N + LDR+++ +
Sbjct: 368 --------RSGMGADLNESLCCVCLDRSIRWF 391
Score = 36.3 bits (84), Expect = 0.005
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
+ H+ + V + +S + D +K+WD + +
Sbjct: 11 AGKAHDADIFSVSA----CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSY 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 97.2 bits (242), Expect = 4e-24
Identities = 21/187 (11%), Positives = 54/187 (28%), Gaps = 12/187 (6%)
Query: 51 KSFEVCDLP---VRAAKFVPRKNWIVTGSDDMQVCVFNYNT---LERFHSFEAHSDYVRC 104
+ ++ P + K +P K+ ++ S D + V+ ++ + + C
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 105 VAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163
+ + I + + Q + + I ++ +AS
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGS-PSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 164 DRTVKVWQLGSASPNFT----LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219
D ++V + L + V + + LI G ++ V+ +
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 220 TCVQTLE 226
Sbjct: 181 EDDNGTI 187
Score = 93.0 bits (231), Expect = 1e-22
Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPK 153
+A DY+ + + P++ LL +S D + ++ ++ + + + H ++
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
+ ++ + L + L +E + GD LI+ + D L+++
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEV 126
Query: 214 WDYQNKTCVQTLESG 228
D +N
Sbjct: 127 IDPRNYGDGVIAVKN 141
Score = 87.2 bits (216), Expect = 2e-20
Identities = 26/239 (10%), Positives = 77/239 (32%), Gaps = 27/239 (11%)
Query: 15 SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-PRKNWI 72
+ CC+ + G + + + + ++ + + + + +
Sbjct: 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115
Query: 73 VTGSDDMQVCVFNYNT----LERFHSFEAHSDYV--RCVAVHPTQPFLLTSSDDMLIKLW 126
+ S D + V + + + +++ V + + L+ ++ ++ +
Sbjct: 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175
Query: 127 NWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASLDRTVKVW------QLGSASPN 178
E G + + + + PK+ +A +S+D V V ++S
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235
Query: 179 FTLEGHEK---------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
F H VN +++ +L + D ++ W+ Q + ++
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRH--KFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Score = 79.1 bits (195), Expect = 1e-17
Identities = 27/224 (12%), Positives = 71/224 (31%), Gaps = 13/224 (5%)
Query: 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV---KSFEVCDLPVRAAKFVP-RKN 70
D + + P++ +L + ++G + V+ + P+ F+
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA-VHPTQPFLLTSSDDMLIKLWN-- 127
I G+ ++ + F + + + L+ +S D LI++ +
Sbjct: 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 128 -WEKAWACQQVFEGHTHYVMQIVINP-KDNNTFASASLDRTVKVWQLGSASPNFTLE--- 182
+ + + V + +++ + V+ ++L +
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRL-VKIWDYQNKTCVQTL 225
G + + V + Y S D R+ V+ +D Q +
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234
Score = 54.9 bits (132), Expect = 4e-09
Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 28/193 (14%)
Query: 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV---CDLPVRAAKFVPRK-N 70
+++ D + ++ + N V + ++ +R +P++
Sbjct: 150 KNKIFTMDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE 207
Query: 71 WIVTGSDDMQVCVFNYNT------LERFHSFEAHSDY---------VRCVAVHPTQPFLL 115
S D +V V ++ + +F H V + P FL
Sbjct: 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267
Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
T+ D +I WN + + + + V++I + N A+ D T K +A
Sbjct: 268 TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD---NILCLATSDDTFK----TNA 320
Query: 176 SPNFTLEGHEKGV 188
+ + T+E + +
Sbjct: 321 AIDQTIELNASSI 333
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 95.9 bits (238), Expect = 3e-23
Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 17/230 (7%)
Query: 15 SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRK 69
++ L E ++A + + V++ + ++ A
Sbjct: 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161
Query: 70 NWIVTGSDDMQVCVFNYNTLERFHS----FEAHSDYVRCVAVHPTQP---FLLTSSDDML 122
++ V + N++ H + V + F++TS D
Sbjct: 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH 221
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
IK+ ++ + + + GH H+V I + SA D + W + T +
Sbjct: 222 IKISHYPQCFIVDKWLFGHKHFVSSICCGK--DYLLLSAGGDDKIFAWDWKTGKNLSTFD 279
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLV---KIWDYQNKTCVQTLESGI 229
+ ++ H + D KI +N V
Sbjct: 280 YNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT 329
Score = 66.7 bits (162), Expect = 4e-13
Identities = 19/177 (10%), Positives = 47/177 (26%), Gaps = 25/177 (14%)
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT----------------LERFHSFEAHSDYV 102
P++ + + + + F Y + ++ + A
Sbjct: 6 PLQNLLTSRDGSLVFAIIKNC-ILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQG 64
Query: 103 RCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162
+ L ++ D + + K + Y+ + + ++ A A
Sbjct: 65 QSSENENENKKLKSNKGDSIKRTAA--KVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD 122
Query: 163 LDRTVKVWQLGSASPNFTL----EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
D+++ V+ + S N K N + +I V D
Sbjct: 123 SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT--TVIIADKFGDVYSID 177
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 89.5 bits (221), Expect = 8e-21
Identities = 27/238 (11%), Positives = 71/238 (29%), Gaps = 34/238 (14%)
Query: 15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT 74
S + T+ + + G VH++ + + V E ++ +FV ++V
Sbjct: 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVV 74
Query: 75 GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---- 130
+ V V + + + + + + + ++L + + +++ ++
Sbjct: 75 INAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133
Query: 131 ------AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW-------------- 170
++ I NP+D T + + +
Sbjct: 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYVTLTYSLVENEIKQSFIYE 192
Query: 171 ----QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
G T E V Y+ ++I+ +D + WD + +
Sbjct: 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL--HIITIHEDNSLVFWDANSGHMIMA 248
Score = 69.5 bits (169), Expect = 6e-14
Identities = 19/190 (10%), Positives = 57/190 (30%), Gaps = 30/190 (15%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
++ V+V + + + + + + + +W++ G + + V++ +
Sbjct: 72 LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130
Query: 90 ER-----------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ--- 135
+ A + + +P + S + + ++ + Q
Sbjct: 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFI 190
Query: 136 --------------QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
+ E T V+Q + +P ++ + D ++ W S
Sbjct: 191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMAR 249
Query: 182 EGHEKGVNCV 191
E +N
Sbjct: 250 TVFETEINVP 259
Score = 61.4 bits (148), Expect = 3e-11
Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 40/232 (17%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
AR + +P + + Y ++ N+ +SF +LP A
Sbjct: 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIY-ELPPFAPGG 200
Query: 66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
+ + E + V HP ++T +D +
Sbjct: 201 DFSE-----------------------KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT----- 180
W+ + T + +I + D +S + + KV+ + +P +T
Sbjct: 238 WDANS----GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293
Query: 181 ----LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
G + + +D G P + + + + + + L +
Sbjct: 294 HKSISRGDNQSLTMIDL---GYTPRYSITSYEGMKNYYANPKQMKIFPLPTN 342
Score = 58.3 bits (140), Expect = 4e-10
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 7/126 (5%)
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
S A TQ L ++ + ++ + + + ++
Sbjct: 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYG--QQQVEVVIKLEDRSAIKEMRFVK--GIY 71
Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
+ TV V L S T+ K + +D D +++ G + + ++D
Sbjct: 72 LVVINAKDTVYVLSLYSQKVLTTVFVPGK-ITSIDTDASLD--WMLIGLQNGSMIVYDID 128
Query: 218 NKTCVQ 223
Sbjct: 129 RDQLSS 134
Score = 48.3 bits (114), Expect = 9e-07
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
+ G + + + N A A++ V ++ LE + + +
Sbjct: 9 AETNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRF 66
Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
G YL+ V + ++ + T+
Sbjct: 67 VKGI---YLVVINAKDTVYVLSLYSQKVLTTV 95
Score = 39.5 bits (91), Expect = 7e-04
Identities = 26/258 (10%), Positives = 70/258 (27%), Gaps = 56/258 (21%)
Query: 12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-- 69
R+ +V HP ++ + + W+ + + + V + + + +
Sbjct: 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDS 267
Query: 70 ----------NWIVTGSDDMQVCVFNYNTLERFH-------------------------- 93
W+ + + + ++ ++ R
Sbjct: 268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327
Query: 94 ----------SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-- 141
+ V + + P+ + LI L G
Sbjct: 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFT 387
Query: 142 ---THYVMQIVINPKDNNTFASASLDRTVKVWQL-GSASPNFTLEGHEKGVNCVDYYHGG 197
+ + + T +AS+ + + L + + ++ L+G + G
Sbjct: 388 DKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447
Query: 198 DKPYLISGADDRLVKIWD 215
I+G + V+I+D
Sbjct: 448 T--AFITGHSNGSVRIYD 463
Score = 36.8 bits (84), Expect = 0.005
Identities = 6/105 (5%), Positives = 24/105 (22%), Gaps = 9/105 (8%)
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA---------WACQQVFEGHTHYVMQI 148
R +T + +++++ + +
Sbjct: 434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK 493
Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
+ + A + V +++ E G +++
Sbjct: 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 83.4 bits (205), Expect = 1e-18
Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 25/216 (11%)
Query: 24 HPTEPWMLASLY-NGHVHVWNHETN-QNVKSFEVCDLPVRAAKF---------VPRKNWI 72
P L+ + G ++ N +V F++C+ P +
Sbjct: 221 APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280
Query: 73 VTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNW 128
V G + V F+ E + H Y+ V+ + + T + D ++N
Sbjct: 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340
Query: 129 EKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
K A + ++ +V P ++ + +++ +A L E
Sbjct: 341 -KDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398
Query: 187 GVNCVDY--YHGGDKPYLISGADDRLVKIWDYQNKT 220
+ + H P +++G+ D + I + +
Sbjct: 399 TITAIGVSRLH----PMVLAGSADGSLIITNAARRL 430
Score = 74.9 bits (183), Expect = 9e-16
Identities = 18/211 (8%), Positives = 53/211 (25%), Gaps = 22/211 (10%)
Query: 38 HVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNW------IVTGSDDMQVCVFN---- 85
+ N T VK + V K+ + + S + +
Sbjct: 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245
Query: 86 -------YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
+ + + ++ + + ++
Sbjct: 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYD 304
Query: 139 EGHTHYVMQIVI--NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG 196
+ H Y++ + + ++ ++ ++D ++ + T +G N V +
Sbjct: 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC 364
Query: 197 GDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
I ++ + V L S
Sbjct: 365 PQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395
Score = 64.5 bits (156), Expect = 3e-12
Identities = 20/205 (9%), Positives = 58/205 (28%), Gaps = 14/205 (6%)
Query: 20 CCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGS 76
E +++++ +G+ +++N + K+ + + P+ +
Sbjct: 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374
Query: 77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---AWA 133
+ H + + + V P +L S D + + N +
Sbjct: 375 GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGI 434
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
+ + + + KD+ +S + + ++ H + C +
Sbjct: 435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTV---NDVSKAKIDAHGINITCTKW 491
Query: 194 ---YHGGDKPYLISGADDRLVKIWD 215
GG L+ +
Sbjct: 492 NETSAGG--KCYAFSNSAGLLTLEY 514
Score = 39.5 bits (91), Expect = 6e-04
Identities = 18/169 (10%), Positives = 40/169 (23%), Gaps = 11/169 (6%)
Query: 12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW 71
R + P + S + V + + A
Sbjct: 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411
Query: 72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
++ GS D + + N H + S + + + + + DD ++E
Sbjct: 412 VLAGSADGSLIITNAAR-RLLHGIKNSSATQKSLRLW---KWDYSIKDDKYRIDSSYEVY 467
Query: 132 WACQQVFEGHTHYVMQIVI-------NPKDNNTFASASLDRTVKVWQLG 173
I I +A ++ + + L
Sbjct: 468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516
Score = 38.3 bits (88), Expect = 0.001
Identities = 12/142 (8%), Positives = 33/142 (23%), Gaps = 22/142 (15%)
Query: 106 AVHPTQPFLLTSSDDMLIKLWN---WEKAWACQQVFEGHTHYVMQIVINPKDNN-----T 157
++ I+++ Q V + + +
Sbjct: 168 PLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGC 227
Query: 158 FASASLDRTVKVW-----------QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
+ S + T+ P+ TL + + D+ ++ G
Sbjct: 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTT---VVCGF 284
Query: 207 DDRLVKIWDYQNKTCVQTLESG 228
+ V +D + +
Sbjct: 285 KNGFVAEFDLTDPEVPSFYDQV 306
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 80.6 bits (198), Expect = 4e-18
Identities = 31/210 (14%), Positives = 69/210 (32%), Gaps = 15/210 (7%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDL-PVRAAKFVP--RKNWIVTGSDDMQVCVFNY 86
+L + + + +TN+ ++ EV + + + + + +Y
Sbjct: 97 LLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156
Query: 87 NTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-GHTHY 144
++ A SD +H L S D ++ ++N F
Sbjct: 157 EDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216
Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQL-----GSASPNFTLEGHEKGVNCVDYYHGGDK 199
+ ++ N + D+TV + L A P +T+ + G D G
Sbjct: 217 IKEVKFAD--NGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK- 273
Query: 200 PYLISGA-DDRLVKIWDYQNKTCVQTLESG 228
+I+ + + + I+ + KT T +
Sbjct: 274 -NMIAYSNESNSLTIYKFDKKTKNWTKDEE 302
Score = 76.7 bits (188), Expect = 9e-17
Identities = 24/227 (10%), Positives = 62/227 (27%), Gaps = 21/227 (9%)
Query: 7 IKRKLTARSDRVKCCDLHPTEP--WMLASLYNGHVHVWNHETNQNVKSFEV-CDLPVRAA 63
++ ++ + H + + + G + ++E + D+ +
Sbjct: 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG 176
Query: 64 KFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDM 121
+ S D + V+N ++ ++ S ++ V +++ D
Sbjct: 177 VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQT 236
Query: 122 LIKLWNWEKAWACQQV----FEGHTHYVMQIVINP---------KDNNTFASASLDRTVK 168
+ ++ K + I+ ++N+ D+ K
Sbjct: 237 -VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
W S L+ +D G I +D I
Sbjct: 296 NWTKDEESA-LCLQSDTADFTDMDVVCGDGGIAAILKTNDS-FNIVA 340
Score = 58.6 bits (141), Expect = 2e-10
Identities = 9/144 (6%), Positives = 35/144 (24%), Gaps = 3/144 (2%)
Query: 86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTH 143
+ + +++ + + +D + + K T
Sbjct: 23 LQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTG 82
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYL 202
+I+ N + + + +E + + ++ + Y
Sbjct: 83 GEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYF 142
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
I + + Y++ +
Sbjct: 143 IWADNRGTIGFQSYEDDSQYIVHS 166
Score = 41.7 bits (97), Expect = 9e-05
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 2/77 (2%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADDRLV 211
D D + QL + T+ G G L+ +
Sbjct: 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQI 106
Query: 212 KIWDYQNKTCVQTLESG 228
I D + ++ +E
Sbjct: 107 TILDSKTNKVLREIEVD 123
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 73.3 bits (179), Expect = 2e-15
Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 36/215 (16%)
Query: 39 VHVWN-HETNQNVKSF--EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
+ +W E ++ + + + D R V V D+ V
Sbjct: 119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-----A 173
Query: 96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV-------FEGHTHYVMQI 148
AH+ ++ ++++ L S+DD+ I LW+ E + E T +
Sbjct: 174 NAHTYHINSISINSDYETYL-SADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA 232
Query: 149 VINPKDNNTFASASLDRTVKVWQL----------------GSASPNFTLEGHEKGVNCVD 192
+P NTF +S T+++ + S ++ V
Sbjct: 233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLE 226
+ H G Y+++ D VK+WD V+T +
Sbjct: 293 FSHSGR--YMMTR-DYLSVKVWDLNMENRPVETYQ 324
Score = 67.1 bits (163), Expect = 3e-13
Identities = 26/201 (12%), Positives = 63/201 (31%), Gaps = 41/201 (20%)
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNTLER--------FHSFEAHSDYVRCVAVHPTQPFLL- 115
++ +DD+++ +++ +R + E ++ + HP
Sbjct: 185 INSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243
Query: 116 TSSDDMLIKLWNWEKAWACQQ---------------VFEGHTHYVMQIVINPKDNNTFAS 160
SS I+L + + C + F + + + +
Sbjct: 244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMT 302
Query: 161 ASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHG-------------GDKPYLISGA 206
+VKVW L + P T + HE + + + G +++G+
Sbjct: 303 RD-YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361
Query: 207 DDRLVKIWDYQNKTCVQTLES 227
+ +++D K + S
Sbjct: 362 YNNFFRMFDRNTKRDITLEAS 382
Score = 55.2 bits (132), Expect = 4e-09
Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 40/195 (20%)
Query: 60 VRAAKFVPRKNWIVTGSDDMQVCVFN--------------YNTLERFHSFEAHSDY---- 101
+ +F + TG +V +F YN F S E DY
Sbjct: 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90
Query: 102 -----VRCVAVHPTQP--FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP-- 152
+ + P + L S++D IKLW K + EG+
Sbjct: 91 EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW---KISERDKRPEGYNLKEEDGRYRDPT 147
Query: 153 --KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
+D V+ H +N + D +S ADD
Sbjct: 148 TVTTLRVPVFRPMDLMVEASPRRI-----FANAHTYHINSIS--INSDYETYLS-ADDLR 199
Query: 211 VKIWDYQNKTCVQTL 225
+ +W + +
Sbjct: 200 INLWHLEITDRSFNI 214
Score = 54.8 bits (131), Expect = 4e-09
Identities = 27/258 (10%), Positives = 72/258 (27%), Gaps = 51/258 (19%)
Query: 6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP------ 59
+ A + + ++ S + +++W+ E +SF + D+
Sbjct: 168 PRRIFANAHTYHINSISINSDYET-YLSADDLRINLWHLEITD--RSFNIVDIKPANMEE 224
Query: 60 ----VRAAKFVPR-KNWIVTGSDDMQVCVF----------------NYNTLERFHSFEAH 98
+ AA+F P N V S + + F
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284
Query: 99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK----- 153
+ V + +++ + D + +K+W+ + ++ H + ++ +
Sbjct: 285 ISSISDVKFSHSGRYMM-TRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343
Query: 154 ---------DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS 204
++ + S + +++ + E + S
Sbjct: 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTV---LKPRKVCAS 400
Query: 205 GADDR---LVKIWDYQNK 219
G + V D+ K
Sbjct: 401 GKRKKDEISVDSLDFNKK 418
Score = 48.6 bits (115), Expect = 5e-07
Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 28/144 (19%)
Query: 98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-------------KAWACQQVFEGHTHY 144
+D + V + + L T + ++ E ++ Q E Y
Sbjct: 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDY 86
Query: 145 VMQIVINPK----------DNNTFASASLDRTVKVWQLGSASPN---FTLEGHEKGVNCV 191
+ + I K + F ++ D+T+K+W++ + L+ +
Sbjct: 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDP 146
Query: 192 DYYHGGDKPYLISGADDRLVKIWD 215
P D +V+
Sbjct: 147 TTVTTLRVPVFRP--MDLMVEASP 168
Score = 43.6 bits (102), Expect = 3e-05
Identities = 12/130 (9%), Positives = 32/130 (24%), Gaps = 30/130 (23%)
Query: 127 NWEKAWACQQVFE------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
+ W QV + + N A+ V ++Q + +
Sbjct: 7 GNDIQWCFSQVKGAVDDDVAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQS 65
Query: 181 LEGH-----------------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
E+ +N + + + + +D+ +K+W
Sbjct: 66 HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKIS 125
Query: 218 NKTCVQTLES 227
+ +
Sbjct: 126 ERDKRPEGYN 135
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 72.0 bits (176), Expect = 6e-15
Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 19/197 (9%)
Query: 34 LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93
+ N + + ++ + D V L +
Sbjct: 132 RITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQD--QGVQQKAILGKGV 189
Query: 94 SFEAHSDYVRCVAVHPTQPFLLTSSDDM-LIKLWNWEKAWACQQVFEGHTH--YVMQIVI 150
+AH++ ++ V ++ + T S D +I+++ E + F V+ +
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKW 248
Query: 151 NPKDNNTFASASLDRTVKVWQLGSASPN--------FTLEGHEKGVNCVDYYHGGDKPY- 201
+ D + A S T+ V+++ + N ++ + + ++ DK
Sbjct: 249 ST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307
Query: 202 ---LISGADDRLVKIWD 215
+ ++ LV +W
Sbjct: 308 GCKIAWISESSLVVVWP 324
Score = 66.2 bits (161), Expect = 5e-13
Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 29/215 (13%)
Query: 23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
LH T + VH+W+ Q+V + D PV+ + +IV D +
Sbjct: 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFL--SREFIVVSYGD-VIS 122
Query: 83 VFNYNTLERFHSFE----------------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
VF + + + + ++ + + + Q ++ D ++
Sbjct: 123 VFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK 182
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT-VKVWQLGSASPNFTLEGHE 185
+ + HT+ + + +N ++ A+ S D T ++V++
Sbjct: 183 AILG---KGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL 238
Query: 186 K--GVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
V + + D L +D + +++ N
Sbjct: 239 DRADVVDMKWST--DGSKLAVVSDKWTLHVFEIFN 271
Score = 49.6 bits (118), Expect = 2e-07
Identities = 21/216 (9%), Positives = 69/216 (31%), Gaps = 28/216 (12%)
Query: 30 MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT 88
L ++N ++ S E+ + + + R N++ V +++
Sbjct: 33 CLILSTLKSFEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90
Query: 89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE---------------KAWA 133
+ + + V+ + + + S +I ++ + ++
Sbjct: 91 KQDVSRIKVDAP-VKDLFLSREF---IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFS 146
Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
+ + + QI I ++ ++ + V Q ++ H + V
Sbjct: 147 NGLLVYSNEFNLGQIHITKLQSS---GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL 203
Query: 194 YHGGDKPYLISGADD-RLVKIWDYQNKTCVQTLESG 228
D + + + D +++++ ++ V+ G
Sbjct: 204 NRKSDM--VATCSQDGTIIRVFKTEDGVLVREFRRG 237
Score = 40.8 bits (95), Expect = 2e-04
Identities = 14/138 (10%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
T S+ V + Q L+ S+ +++N + ++
Sbjct: 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP---VAHIMSQEMRHLS 62
Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
++ + + N + V +W ++ V + I +
Sbjct: 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAP-VKDLFLSREF-----IVVS 116
Query: 207 DDRLVKIWDYQNKTCVQT 224
++ ++ + N T
Sbjct: 117 YGDVISVFKFGNPWKRIT 134
Score = 40.8 bits (95), Expect = 2e-04
Identities = 20/162 (12%), Positives = 48/162 (29%), Gaps = 17/162 (10%)
Query: 11 LTARSDRVKCCDLHPTEPWM-LASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVP 67
+ A ++ +K L+ + S + V+ E V+ F + V K+
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250
Query: 68 RKNWIVTGSDDMQVCVFNYNT--LERFHSFEA------HSDYVRCVAVHPTQPF------ 113
+ + SD + VF + H+ + +
Sbjct: 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310
Query: 114 LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
+ S+ L+ +W + +V I ++ ++
Sbjct: 311 IAWISESSLVVVWPHTRMIETFKVVFDDEMERWLIQMDQREQ 352
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 67.6 bits (164), Expect = 2e-13
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 16/132 (12%)
Query: 98 HSDYVRCVAVHPTQPFL----LTSSDDMLIKLWNWE----------KAWACQQVFEGHTH 143
+ +A+ L ++S +I ++ + +A ++ +
Sbjct: 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG 150
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
V+ + NP + A D ++ V Q+ V V + G L
Sbjct: 151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK--QLA 208
Query: 204 SGADDRLVKIWD 215
G + V +
Sbjct: 209 VGKQNGTVVQYL 220
Score = 43.4 bits (101), Expect = 3e-05
Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 21/181 (11%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGH----VHVWNHET-----NQNVKSFEVCD 57
++ L + L + A + + + ++ T Q + F
Sbjct: 84 VQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK 143
Query: 58 LPVRAAKFVPRKNW-------IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPT 110
L A V W + D + V + + + V V P
Sbjct: 144 LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK 203
Query: 111 QPFLLTSSDDMLIKLWNWEKAWACQQ-----VFEGHTHYVMQIVINPKDNNTFASASLDR 165
L + + + H V+ ++ A+ D
Sbjct: 204 GKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263
Query: 166 T 166
T
Sbjct: 264 T 264
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia,
homologous recomination, polymorphism, phosphoprotein,
beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB:
3eu7_A
Length = 356
Score = 35.2 bits (80), Expect = 0.013
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 11 LTARSDRVKCCDLHPTEP-----------WMLASLYNGHVHVWNHETNQNVKSF-EVCDL 58
T S V L P + A L +G + +W+ Q V D
Sbjct: 268 KTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ 327
Query: 59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87
K+ + ++ G D + V++Y+
Sbjct: 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 35.3 bits (81), Expect = 0.013
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 32 ASLYNGHVHVWNHETNQNVKSFEVCDLP----VRAAKFVPRKNWI-VTGSDDMQVCVFNY 86
L + + V + + Q V+ +P N + V+ V VF+
Sbjct: 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198
Query: 87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
TL + + + + + P + + S+
Sbjct: 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.046
Identities = 30/181 (16%), Positives = 45/181 (24%), Gaps = 80/181 (44%)
Query: 16 DRVKCCDLH-PTEPWMLASLYNGHVHV--------------------WNHETNQN----- 49
D V + H P + SL NG ++ +Q+
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 50 ------VKSFEVCDLPVRAAKF---------------VPRKNWIVTGSDDMQVCVFNYNT 88
F LPV A+ F + + N D+Q+ V Y+T
Sbjct: 411 ERKLKFSNRF----LPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAK-DIQIPV--YDT 462
Query: 89 LE----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
+ R S V C+ P WE TH
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPV----------------KWETT-----TQFKATHI 501
Query: 145 V 145
+
Sbjct: 502 L 502
Score = 32.3 bits (73), Expect = 0.15
Identities = 43/279 (15%), Positives = 73/279 (26%), Gaps = 124/279 (44%)
Query: 27 EPWMLASLYNGHV---HVWN--HETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV 81
E M LY VWN ++ F + D+ V P I G + +
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI-VINN---PVNLTIHFGGEKGKR 1683
Query: 82 CVFNYNTLERFHSFEAHSD-YVRCVAV--------------HP---------TQPFLLTS 117
NY+ + FE D ++ + TQP L
Sbjct: 1684 IRENYSAM----IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 118 SDDMLIKLWNWE--KAWACQQ---VFEGH------------------------------- 141
+E K+ F GH
Sbjct: 1740 E--KAA----FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 142 -----------THYVMQIVINP-KDNNTFASASLDRTVKVWQLGSASP------NFTLEG 183
++Y M I INP + +F+ +L V+ ++G + N+
Sbjct: 1794 QVAVPRDELGRSNYGM-IAINPGRVAASFSQEALQYVVE--RVGKRTGWLVEIVNY---- 1846
Query: 184 HEKGVNCVDYYHGGDKP---YLISG---ADDRLVKIWDY 216
N Y+ +G A D + + ++
Sbjct: 1847 -----NV---------ENQQYVAAGDLRALDTVTNVLNF 1871
Score = 31.9 bits (72), Expect = 0.17
Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 46/222 (20%)
Query: 9 RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFE---VCDLPVRAAK 64
R LT ++ L PT + +AS L + T E +L K
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL---VGK 63
Query: 65 FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
F+ ++ + + +V F+ FE + Y+ +H LL +D L+K
Sbjct: 64 FL---GYVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
K + +I+ + SA L R V G+A + G
Sbjct: 119 TKELIKNY-----------ITARIMAKRPFDKKSNSA-LFRAV---GEGNAQL-VAIFG- 161
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWD-YQNKTCVQTL 225
G G Y + L ++ Y V L
Sbjct: 162 --G-------QGNTDDYF-----EELRDLYQTYH--VLVGDL 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.64
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 29/165 (17%)
Query: 38 HVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
H H + ET ++ ++ D L V FV N+ DM + + ++ H
Sbjct: 3 HHHHMDFETGEHQYQYK--DILSVFEDAFV--DNFDCKDVQDMPKSILSKEEID--HIIM 56
Query: 97 AHSDYVR------CVAVHPT---QPFLLTSSDDMLIKLWNW-EKAWA--CQQVFEGHTHY 144
+ + Q F+ +++L + + +Q Y
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQLGSA------SPNFTLEG 183
+ Q DN FA ++ R +L A + N ++G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 29.7 bits (66), Expect = 0.70
Identities = 18/139 (12%), Positives = 41/139 (29%), Gaps = 8/139 (5%)
Query: 29 WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP---RKNWIVTGSDDMQVCVFN 85
++LA + V + E K + D + + T + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 86 YNTLE-----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG 140
T E + E + A+ P L + ++L ++E +++
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 141 HTHYVMQIVINPKDNNTFA 159
T + P+ A
Sbjct: 123 ETLSRRKAFEAPRQITMLA 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.87
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 163 LDRTVKVWQLGSASP----NFTLE 182
L ++K++ SA P T+E
Sbjct: 25 LQASLKLYADDSA-PALAIKATME 47
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 28.6 bits (63), Expect = 1.9
Identities = 16/179 (8%), Positives = 48/179 (26%), Gaps = 37/179 (20%)
Query: 25 PTEPWMLAS-------LYNGHVHVWNHETNQNVKSFEV---------------------- 55
P + +++ + + ++ + +T + + +
Sbjct: 147 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 206
Query: 56 ---CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHPTQ 111
+ A+F K T + T + F ++ P
Sbjct: 207 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 266
Query: 112 PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
P + + L K ++ ++ + HT+Y + + + + V+
Sbjct: 267 PNQIYGVLNRLAK-YDLKQRKLIKAANLDHTYY--CVAFDK-KGDKLYLGGTFNDLAVF 321
>2oo3_A Protein involved in catabolism of external DNA; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.00A {Legionella pneumophila subsp} SCOP:
c.66.1.59
Length = 283
Score = 27.6 bits (61), Expect = 3.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN 47
DR+ C+LHPTE L L + + V+ + T+
Sbjct: 105 FAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTD 145
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1;
2.40A {Mus musculus} PDB: 2e32_A
Length = 297
Score = 27.2 bits (59), Expect = 4.5
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG 197
Y + + + ++ + A + + + T + GV V + HGG
Sbjct: 221 YELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGG 274
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 27.0 bits (60), Expect = 4.9
Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 14/152 (9%)
Query: 32 ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY----- 86
+ N V + +T + + D + +V V +
Sbjct: 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV 165
Query: 87 ------NTLERFHSFEAHSDYVRCVAVHPTQPFLLTS---SDDMLIKLWNWEKAWACQQV 137
++ + + +A+ L T+ + + I + + + +
Sbjct: 166 IWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL 225
Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKV 169
+G H+ + I ++ F + S V V
Sbjct: 226 DDGKEHFFINISLDTARQRAFITDSKAAEVLV 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.447
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,584,396
Number of extensions: 196924
Number of successful extensions: 2287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 349
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)