BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4654
         (559 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UG9|A Chain A, Crystal Structure Of Glucodextranase From Arthrobacter
           Globiformis I42
 pdb|1ULV|A Chain A, Crystal Structure Of Glucodextranase Complexed With
           Acarbose
          Length = 1020

 Score = 29.6 bits (65), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 358 VVRGDHTSVDFYLAVVPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAV 406
           VVRG   +   Y++V    TE  V   DG+F+  V++TG   KV   AV
Sbjct: 711 VVRGTTNAAKVYVSVNGTATEAPV--TDGTFSLDVALTGAKNKVTVAAV 757


>pdb|2POA|A Chain A, Schistosoma Mansoni Sm14 Fatty Acid-Binding Protein:
           Improvement Of Protein Stability By Substitution Of The
           Single Cys62 Residue
          Length = 133

 Score = 29.3 bits (64), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 322 GEWVLMSTEVTDKTGRVSYTLPE--DHKLSYGMYPVKMVVRGDHTSVDFYLAVVPPRTEV 379
           G+ + M TE T K   V++   E  D K S G   VK VV  +  S      V P  T V
Sbjct: 46  GDKMTMLTESTFKNLSVTFKFGEEFDEKTSDGR-NVKSVVEKNSESKLTQTQVDPKNTTV 104

Query: 380 VVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQEL 415
           +V  VDG  T   +VT        G V  +R+++ L
Sbjct: 105 IVREVDGD-TMKTTVT-------VGDVTAIRNYKRL 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,548,866
Number of Sequences: 62578
Number of extensions: 738994
Number of successful extensions: 1445
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 3
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)