Query psy4654
Match_columns 559
No_of_seqs 343 out of 551
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 22:21:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5083 SMP2 Uncharacterized p 100.0 5.1E-42 1.1E-46 358.3 13.9 256 273-530 266-551 (580)
2 KOG2116|consensus 100.0 2.2E-41 4.8E-46 367.0 12.2 190 339-530 489-706 (738)
3 PF08235 LNS2: LNS2 (Lipin/Ned 100.0 1.4E-37 3.1E-42 292.5 12.6 131 379-510 1-156 (157)
4 PF02862 DDHD: DDHD domain; I 100.0 2.8E-37 6E-42 304.6 6.0 203 23-238 12-227 (227)
5 smart00775 LNS2 LNS2 domain. T 99.9 2.1E-27 4.7E-32 223.6 14.7 131 379-510 1-156 (157)
6 KOG2308|consensus 99.9 1.2E-26 2.5E-31 258.1 6.1 203 22-241 520-732 (741)
7 TIGR01689 EcbF-BcbF capsule bi 99.4 9.5E-13 2.1E-17 120.6 9.0 74 377-451 1-87 (126)
8 TIGR01675 plant-AP plant acid 99.3 2.9E-11 6.4E-16 121.0 12.5 122 374-502 74-221 (229)
9 PF03767 Acid_phosphat_B: HAD 99.2 9.4E-12 2E-16 124.4 4.2 125 375-501 70-220 (229)
10 TIGR01680 Veg_Stor_Prot vegeta 99.2 1.6E-10 3.5E-15 118.0 11.5 133 376-522 100-261 (275)
11 PRK11009 aphA acid phosphatase 99.1 2.9E-10 6.4E-15 114.5 11.5 120 374-501 59-212 (237)
12 PHA02530 pseT polynucleotide k 99.0 2.9E-09 6.3E-14 108.7 11.7 124 374-499 155-295 (300)
13 TIGR01533 lipo_e_P4 5'-nucleot 98.9 7.4E-09 1.6E-13 106.1 11.0 110 374-490 72-205 (266)
14 cd01427 HAD_like Haloacid deha 98.9 1.3E-08 2.8E-13 88.4 9.8 114 379-496 1-136 (139)
15 COG5663 Uncharacterized conser 98.9 1.1E-09 2.4E-14 104.3 3.1 97 395-505 67-163 (194)
16 TIGR01662 HAD-SF-IIIA HAD-supe 98.7 1.7E-07 3.8E-12 84.4 10.6 115 378-496 1-127 (132)
17 TIGR01672 AphA HAD superfamily 98.6 2.9E-07 6.3E-12 92.9 11.2 117 375-499 60-210 (237)
18 PF06941 NT5C: 5' nucleotidase 98.5 8.3E-08 1.8E-12 92.6 3.9 54 398-451 71-130 (191)
19 TIGR01656 Histidinol-ppas hist 98.5 9.4E-07 2E-11 81.9 9.9 116 378-496 1-141 (147)
20 TIGR01664 DNA-3'-Pase DNA 3'-p 98.3 4E-06 8.7E-11 79.9 11.0 118 376-496 12-158 (166)
21 TIGR00213 GmhB_yaeD D,D-heptos 98.3 6.4E-06 1.4E-10 78.4 10.7 116 378-496 2-146 (176)
22 PRK08942 D,D-heptose 1,7-bisph 98.1 3.2E-05 7E-10 73.8 12.9 116 377-495 3-142 (181)
23 PLN02954 phosphoserine phospha 98.1 1.5E-05 3.3E-10 77.7 10.1 93 400-495 84-191 (224)
24 TIGR01670 YrbI-phosphatas 3-de 98.1 2E-05 4.3E-10 73.9 9.6 105 377-495 1-114 (154)
25 TIGR01261 hisB_Nterm histidino 98.1 1.6E-05 3.6E-10 75.5 9.0 117 378-497 2-144 (161)
26 COG4850 Uncharacterized conser 98.0 6.3E-05 1.4E-09 78.7 12.7 163 330-492 113-297 (373)
27 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.0 2.4E-05 5.2E-10 74.4 8.0 99 401-506 81-192 (201)
28 PRK13222 phosphoglycolate phos 98.0 5.3E-05 1.1E-09 73.5 10.5 92 399-496 92-189 (226)
29 TIGR00338 serB phosphoserine p 98.0 3.1E-05 6.6E-10 75.3 8.8 124 375-505 12-196 (219)
30 PF13344 Hydrolase_6: Haloacid 98.0 5E-05 1.1E-09 66.9 9.2 98 380-494 1-100 (101)
31 PRK13478 phosphonoacetaldehyde 97.9 4.3E-05 9.4E-10 77.3 9.5 88 401-496 102-199 (267)
32 PRK09484 3-deoxy-D-manno-octul 97.9 3.5E-05 7.6E-10 74.3 8.4 108 376-495 20-134 (183)
33 PRK13226 phosphoglycolate phos 97.9 3.9E-05 8.4E-10 76.0 8.5 91 400-496 95-191 (229)
34 TIGR03351 PhnX-like phosphonat 97.9 8.3E-05 1.8E-09 72.3 10.4 91 400-496 87-186 (220)
35 PRK13288 pyrophosphatase PpaX; 97.9 5.1E-05 1.1E-09 73.8 8.8 90 401-496 83-178 (214)
36 TIGR01422 phosphonatase phosph 97.8 0.00014 3E-09 72.7 10.9 88 401-496 100-197 (253)
37 PRK01158 phosphoglycolate phos 97.8 6.5E-05 1.4E-09 73.4 7.8 58 377-443 3-60 (230)
38 PLN02770 haloacid dehalogenase 97.8 0.00011 2.5E-09 73.7 9.7 90 401-496 109-204 (248)
39 TIGR01449 PGP_bact 2-phosphogl 97.8 8.2E-05 1.8E-09 71.6 8.3 92 400-497 85-182 (213)
40 PRK10826 2-deoxyglucose-6-phos 97.8 8.9E-05 1.9E-09 72.6 8.4 91 400-496 92-188 (222)
41 TIGR01454 AHBA_synth_RP 3-amin 97.8 7.7E-05 1.7E-09 72.0 7.9 91 401-497 76-172 (205)
42 PLN03243 haloacid dehalogenase 97.7 0.00032 6.9E-09 71.6 12.3 90 401-496 110-205 (260)
43 PLN02645 phosphoglycolate phos 97.7 0.00019 4.1E-09 74.8 10.5 106 376-496 27-134 (311)
44 TIGR02009 PGMB-YQAB-SF beta-ph 97.7 0.00012 2.7E-09 68.7 8.3 88 400-495 88-181 (185)
45 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.7 6.6E-05 1.4E-09 76.2 6.9 63 378-443 2-64 (257)
46 PRK13582 thrH phosphoserine ph 97.7 0.00025 5.5E-09 68.1 10.6 88 401-495 69-166 (205)
47 TIGR01428 HAD_type_II 2-haloal 97.7 0.00017 3.6E-09 69.2 9.4 98 400-506 92-195 (198)
48 TIGR01487 SPP-like sucrose-pho 97.7 6.6E-05 1.4E-09 73.2 6.5 50 378-433 2-51 (215)
49 PRK09552 mtnX 2-hydroxy-3-keto 97.7 0.00013 2.9E-09 71.6 8.6 89 400-494 74-181 (219)
50 PRK13223 phosphoglycolate phos 97.7 0.00041 8.8E-09 71.0 12.1 92 401-498 102-199 (272)
51 PRK08238 hypothetical protein; 97.7 0.00035 7.6E-09 77.4 11.9 119 376-506 9-168 (479)
52 TIGR01488 HAD-SF-IB Haloacid D 97.6 0.0002 4.4E-09 66.8 8.6 89 400-491 73-176 (177)
53 TIGR01990 bPGM beta-phosphoglu 97.6 0.0002 4.3E-09 67.3 8.4 87 400-496 87-181 (185)
54 PRK14988 GMP/IMP nucleotidase; 97.6 0.00021 4.5E-09 70.9 8.8 89 400-496 93-189 (224)
55 PRK11587 putative phosphatase; 97.6 0.00027 5.8E-09 69.2 9.4 90 401-496 84-178 (218)
56 TIGR01549 HAD-SF-IA-v1 haloaci 97.6 0.00019 4.1E-09 65.9 7.8 87 401-493 65-154 (154)
57 PRK10976 putative hydrolase; P 97.6 0.00016 3.4E-09 72.6 7.9 58 377-443 2-59 (266)
58 PRK10444 UMP phosphatase; Prov 97.6 0.00011 2.5E-09 74.4 6.9 65 378-449 2-68 (248)
59 PRK13225 phosphoglycolate phos 97.6 0.00026 5.7E-09 72.8 9.4 88 401-496 143-235 (273)
60 PF08282 Hydrolase_3: haloacid 97.6 0.00011 2.4E-09 70.8 6.2 52 380-437 1-52 (254)
61 PRK10513 sugar phosphate phosp 97.6 0.00019 4.1E-09 72.1 7.9 57 377-442 3-59 (270)
62 TIGR01668 YqeG_hyp_ppase HAD s 97.6 0.00048 1E-08 65.7 10.1 109 374-496 22-132 (170)
63 PRK15126 thiamin pyrimidine py 97.6 0.00019 4.1E-09 72.5 7.7 58 377-443 2-59 (272)
64 PF13419 HAD_2: Haloacid dehal 97.5 0.00012 2.6E-09 66.6 5.2 93 398-496 75-173 (176)
65 TIGR02253 CTE7 HAD superfamily 97.5 0.00075 1.6E-08 65.5 10.9 90 401-496 95-191 (221)
66 PRK10530 pyridoxal phosphate ( 97.5 0.00028 6E-09 70.7 8.0 58 377-443 3-60 (272)
67 PLN02575 haloacid dehalogenase 97.5 0.00057 1.2E-08 73.7 10.4 90 401-496 217-312 (381)
68 TIGR01663 PNK-3'Pase polynucle 97.5 0.00038 8.2E-09 77.9 9.3 113 375-506 166-294 (526)
69 PRK03669 mannosyl-3-phosphogly 97.5 0.00034 7.4E-09 71.0 8.2 65 375-448 5-69 (271)
70 PRK11590 hypothetical protein; 97.5 0.00089 1.9E-08 65.7 10.8 99 401-507 96-206 (211)
71 COG0560 SerB Phosphoserine pho 97.5 0.0004 8.7E-09 69.0 8.3 103 399-507 76-190 (212)
72 TIGR01482 SPP-subfamily Sucros 97.5 0.00018 3.8E-09 70.1 5.6 47 380-432 1-47 (225)
73 TIGR00099 Cof-subfamily Cof su 97.4 0.00036 7.8E-09 69.8 7.8 57 379-444 1-57 (256)
74 PRK06769 hypothetical protein; 97.4 0.00079 1.7E-08 64.4 9.5 117 376-497 3-134 (173)
75 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.4 0.00063 1.4E-08 65.2 8.8 98 401-505 88-199 (202)
76 TIGR01452 PGP_euk phosphoglyco 97.4 0.00029 6.3E-09 72.1 6.8 60 377-443 2-61 (279)
77 TIGR02726 phenyl_P_delta pheny 97.4 0.0006 1.3E-08 65.6 8.5 108 377-495 7-120 (169)
78 PRK11133 serB phosphoserine ph 97.4 0.00065 1.4E-08 71.7 9.4 108 400-516 181-302 (322)
79 PHA02597 30.2 hypothetical pro 97.4 0.00081 1.8E-08 64.5 9.2 90 401-497 75-171 (197)
80 TIGR02252 DREG-2 REG-2-like, H 97.4 0.0013 2.9E-08 63.1 10.7 89 401-496 106-201 (203)
81 TIGR01486 HAD-SF-IIB-MPGP mann 97.4 0.00038 8.3E-09 69.9 7.1 61 379-449 1-61 (256)
82 TIGR01545 YfhB_g-proteo haloac 97.4 0.0006 1.3E-08 67.4 8.2 102 401-508 95-206 (210)
83 COG0546 Gph Predicted phosphat 97.4 0.0011 2.5E-08 65.3 10.0 89 400-496 89-185 (220)
84 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.4 0.00038 8.3E-09 70.3 6.8 65 378-449 2-68 (249)
85 COG0561 Cof Predicted hydrolas 97.4 0.00033 7.3E-09 70.3 6.3 55 377-437 3-57 (264)
86 TIGR02461 osmo_MPG_phos mannos 97.3 0.0005 1.1E-08 68.5 7.3 56 379-444 1-56 (225)
87 TIGR01489 DKMTPPase-SF 2,3-dik 97.3 0.0012 2.6E-08 61.9 9.6 92 400-495 72-184 (188)
88 TIGR02463 MPGP_rel mannosyl-3- 97.3 0.00052 1.1E-08 67.0 7.3 62 379-449 1-62 (221)
89 PTZ00174 phosphomannomutase; P 97.3 0.00031 6.7E-09 70.6 5.8 47 376-428 4-50 (247)
90 TIGR01681 HAD-SF-IIIC HAD-supe 97.3 0.00045 9.7E-09 63.0 6.0 52 378-430 1-60 (128)
91 TIGR03333 salvage_mtnX 2-hydro 97.3 0.00084 1.8E-08 65.8 8.2 89 400-494 70-177 (214)
92 PRK12702 mannosyl-3-phosphogly 97.3 0.00092 2E-08 69.9 8.7 53 377-435 1-53 (302)
93 PRK00192 mannosyl-3-phosphogly 97.3 0.00045 9.6E-09 70.2 6.2 58 377-443 4-61 (273)
94 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.3 0.0017 3.8E-08 64.9 10.3 104 376-494 7-116 (242)
95 TIGR01509 HAD-SF-IA-v3 haloaci 97.3 0.0016 3.4E-08 60.7 9.4 90 400-496 85-180 (183)
96 PF12710 HAD: haloacid dehalog 97.2 0.00048 1E-08 64.8 5.4 85 403-490 88-192 (192)
97 TIGR01685 MDP-1 magnesium-depe 97.2 0.0024 5.1E-08 61.9 10.0 115 377-496 2-153 (174)
98 PLN02940 riboflavin kinase 97.2 0.00095 2.1E-08 71.8 7.7 90 401-496 94-190 (382)
99 PLN02779 haloacid dehalogenase 97.2 0.0027 5.8E-08 65.6 10.6 93 401-496 145-242 (286)
100 PRK05446 imidazole glycerol-ph 97.2 0.003 6.6E-08 67.6 11.2 123 377-505 2-150 (354)
101 PRK06698 bifunctional 5'-methy 97.1 0.0031 6.8E-08 69.1 11.4 89 400-496 330-423 (459)
102 PRK10725 fructose-1-P/6-phosph 97.1 0.0017 3.7E-08 61.4 8.0 83 406-495 93-181 (188)
103 TIGR02247 HAD-1A3-hyp Epoxide 97.1 0.0021 4.6E-08 62.2 8.5 93 400-496 94-192 (211)
104 TIGR01484 HAD-SF-IIB HAD-super 97.0 0.0011 2.4E-08 63.9 6.0 48 379-431 1-48 (204)
105 PLN02919 haloacid dehalogenase 97.0 0.0034 7.3E-08 75.8 10.8 89 401-495 162-257 (1057)
106 PLN02887 hydrolase family prot 96.9 0.0011 2.3E-08 75.2 5.8 57 368-430 299-355 (580)
107 TIGR02254 YjjG/YfnB HAD superf 96.9 0.0047 1E-07 59.7 9.3 89 400-496 97-194 (224)
108 TIGR01684 viral_ppase viral ph 96.9 0.0028 6.1E-08 66.2 8.2 69 376-451 125-196 (301)
109 TIGR01993 Pyr-5-nucltdase pyri 96.8 0.0045 9.7E-08 58.7 8.0 14 379-392 2-15 (184)
110 PF08645 PNK3P: Polynucleotide 96.8 0.0015 3.1E-08 62.2 4.4 111 378-508 1-130 (159)
111 PF03031 NIF: NLI interacting 96.8 0.0019 4.1E-08 60.1 5.0 73 378-451 1-86 (159)
112 TIGR01548 HAD-SF-IA-hyp1 haloa 96.8 0.0053 1.1E-07 59.1 8.2 15 378-392 1-15 (197)
113 PRK10563 6-phosphogluconate ph 96.7 0.0054 1.2E-07 59.8 8.0 85 401-496 89-182 (221)
114 PHA03398 viral phosphatase sup 96.7 0.006 1.3E-07 63.9 8.4 70 375-451 126-198 (303)
115 smart00577 CPDc catalytic doma 96.6 0.0053 1.1E-07 57.2 7.0 60 377-437 2-81 (148)
116 PRK09456 ?-D-glucose-1-phospha 96.6 0.0084 1.8E-07 57.9 8.6 90 401-496 85-181 (199)
117 PRK10187 trehalose-6-phosphate 96.6 0.0043 9.3E-08 63.5 6.5 58 378-439 15-73 (266)
118 PF09949 DUF2183: Uncharacteri 96.6 0.008 1.7E-07 53.4 7.3 73 419-492 2-84 (100)
119 TIGR02251 HIF-SF_euk Dullard-l 96.6 0.0077 1.7E-07 57.2 7.7 73 378-451 2-92 (162)
120 PRK09449 dUMP phosphatase; Pro 96.5 0.011 2.4E-07 57.6 8.9 88 400-496 95-192 (224)
121 COG0647 NagD Predicted sugar p 96.5 0.015 3.3E-07 60.1 10.2 102 376-494 7-111 (269)
122 PRK14502 bifunctional mannosyl 96.5 0.0063 1.4E-07 69.9 7.8 51 376-432 415-465 (694)
123 PLN02423 phosphomannomutase 96.5 0.004 8.7E-08 62.9 5.4 46 375-427 4-50 (245)
124 TIGR02137 HSK-PSP phosphoserin 96.4 0.0084 1.8E-07 59.1 7.1 119 400-530 68-198 (203)
125 COG3700 AphA Acid phosphatase 96.4 0.015 3.3E-07 56.9 8.5 120 376-502 62-213 (237)
126 TIGR01460 HAD-SF-IIA Haloacid 96.4 0.0061 1.3E-07 61.0 6.0 57 380-443 1-58 (236)
127 COG2503 Predicted secreted aci 96.3 0.018 3.8E-07 58.8 8.9 102 374-482 76-201 (274)
128 COG0241 HisB Histidinol phosph 96.3 0.055 1.2E-06 53.1 11.7 121 376-499 4-148 (181)
129 COG0637 Predicted phosphatase/ 96.2 0.0097 2.1E-07 59.2 6.5 91 400-496 86-182 (221)
130 TIGR01456 CECR5 HAD-superfamil 96.2 0.0086 1.9E-07 62.9 6.4 58 379-443 2-64 (321)
131 PF11019 DUF2608: Protein of u 96.1 0.013 2.8E-07 60.0 6.6 69 376-444 19-125 (252)
132 TIGR01485 SPP_plant-cyano sucr 96.1 0.0074 1.6E-07 60.5 4.8 50 379-431 3-52 (249)
133 TIGR01686 FkbH FkbH-like domai 96.0 0.038 8.3E-07 57.9 10.2 110 376-493 2-123 (320)
134 PRK10748 flavin mononucleotide 95.6 0.038 8.2E-07 55.1 7.8 83 402-496 115-204 (238)
135 PF12689 Acid_PPase: Acid Phos 95.6 0.0088 1.9E-07 57.9 2.9 117 376-497 2-148 (169)
136 COG1778 Low specificity phosph 95.2 0.063 1.4E-06 51.6 7.2 108 376-497 7-123 (170)
137 PRK14501 putative bifunctional 95.1 0.04 8.7E-07 64.0 6.9 61 375-439 490-551 (726)
138 cd05469 Transthyretin_like Tra 95.1 0.037 8E-07 50.4 5.0 49 311-360 19-67 (113)
139 PF00576 Transthyretin: HIUase 95.0 0.017 3.6E-07 52.5 2.5 50 311-360 19-68 (112)
140 TIGR01511 ATPase-IB1_Cu copper 94.6 0.22 4.9E-06 56.3 11.1 104 376-495 384-488 (562)
141 TIGR02962 hdxy_isourate hydrox 94.6 0.058 1.3E-06 49.0 5.0 49 311-360 19-67 (112)
142 PF00702 Hydrolase: haloacid d 94.5 0.11 2.4E-06 49.4 7.2 86 400-493 127-215 (215)
143 TIGR02471 sucr_syn_bact_C sucr 94.5 0.034 7.5E-07 55.1 3.8 44 379-430 1-44 (236)
144 TIGR00685 T6PP trehalose-phosp 94.4 0.074 1.6E-06 53.4 6.0 50 377-427 3-53 (244)
145 smart00095 TR_THY Transthyreti 94.3 0.068 1.5E-06 49.2 4.8 48 311-359 22-69 (121)
146 cd05822 TLP_HIUase HIUase (5-h 94.2 0.081 1.7E-06 48.1 5.1 49 311-360 19-67 (112)
147 cd05821 TLP_Transthyretin Tran 94.2 0.078 1.7E-06 48.8 4.9 49 311-360 25-73 (121)
148 PLN03017 trehalose-phosphatase 94.2 0.064 1.4E-06 57.9 5.1 58 373-432 107-164 (366)
149 COG2351 Transthyretin-like pro 94.0 0.086 1.9E-06 48.3 4.8 38 322-359 37-74 (124)
150 TIGR02250 FCP1_euk FCP1-like p 93.9 0.16 3.5E-06 48.3 6.8 77 374-451 3-109 (156)
151 PF05116 S6PP: Sucrose-6F-phos 93.3 0.069 1.5E-06 54.1 3.3 59 377-444 2-60 (247)
152 COG1877 OtsB Trehalose-6-phosp 93.1 0.16 3.4E-06 52.7 5.6 63 372-438 13-76 (266)
153 KOG2914|consensus 93.1 0.58 1.3E-05 47.3 9.5 91 401-496 93-192 (222)
154 KOG1615|consensus 92.9 0.48 1E-05 47.3 8.3 124 395-527 83-221 (227)
155 TIGR01525 ATPase-IB_hvy heavy 92.8 0.61 1.3E-05 52.6 10.3 102 378-494 365-468 (556)
156 PRK10671 copA copper exporting 92.7 0.6 1.3E-05 55.3 10.5 104 376-494 629-733 (834)
157 PF02358 Trehalose_PPase: Treh 92.6 0.087 1.9E-06 52.5 2.9 48 381-429 1-49 (235)
158 PRK15036 hydroxyisourate hydro 92.6 0.21 4.5E-06 46.9 5.1 49 311-361 45-93 (137)
159 PLN02151 trehalose-phosphatase 92.5 0.12 2.7E-06 55.4 4.1 59 370-430 91-149 (354)
160 PLN02205 alpha,alpha-trehalose 92.4 0.17 3.8E-06 60.1 5.5 56 376-437 595-651 (854)
161 COG2179 Predicted hydrolase of 92.3 0.9 1.9E-05 44.3 9.2 64 373-444 24-87 (175)
162 TIGR01512 ATPase-IB2_Cd heavy 92.3 0.59 1.3E-05 52.6 9.3 101 379-494 344-446 (536)
163 COG1011 Predicted hydrolase (H 92.3 0.96 2.1E-05 43.7 9.6 91 400-497 99-196 (229)
164 TIGR02245 HAD_IIID1 HAD-superf 91.8 0.41 8.8E-06 47.5 6.5 61 375-437 19-81 (195)
165 PF06888 Put_Phosphatase: Puta 91.5 0.28 6.1E-06 49.9 5.1 46 401-449 72-121 (234)
166 PLN02382 probable sucrose-phos 91.3 0.27 5.9E-06 53.7 5.1 49 378-430 10-59 (413)
167 TIGR01497 kdpB K+-transporting 91.3 1.2 2.6E-05 51.9 10.5 103 378-495 427-530 (675)
168 COG4996 Predicted phosphatase 90.8 1.5 3.2E-05 41.5 8.5 105 379-505 2-125 (164)
169 COG3769 Predicted hydrolase (H 89.8 0.62 1.3E-05 47.4 5.6 45 376-427 6-50 (274)
170 PLN02580 trehalose-phosphatase 89.7 0.51 1.1E-05 51.4 5.4 52 376-429 118-169 (384)
171 PRK11033 zntA zinc/cadmium/mer 88.3 2.7 5.8E-05 49.4 10.4 102 376-494 547-649 (741)
172 KOG2882|consensus 87.6 1.1 2.4E-05 47.2 6.0 45 376-427 21-65 (306)
173 KOG3006|consensus 86.8 0.28 6.1E-06 45.1 1.0 49 311-360 39-87 (132)
174 KOG0207|consensus 86.7 2.7 5.9E-05 50.0 9.0 106 375-495 701-809 (951)
175 TIGR01116 ATPase-IIA1_Ca sarco 86.3 3.9 8.4E-05 49.3 10.4 94 395-495 533-652 (917)
176 TIGR01691 enolase-ppase 2,3-di 85.9 2.3 5E-05 42.7 7.0 94 400-496 95-192 (220)
177 COG2217 ZntA Cation transport 85.6 4.1 8.9E-05 47.9 9.8 101 379-495 519-623 (713)
178 PF09419 PGP_phosphatase: Mito 85.3 1.3 2.8E-05 43.0 4.8 50 372-426 36-87 (168)
179 TIGR01647 ATPase-IIIA_H plasma 84.8 4.9 0.00011 47.4 10.1 92 394-495 437-556 (755)
180 PF10307 DUF2410: Hypothetical 84.5 6.5 0.00014 39.3 9.3 93 398-491 53-151 (197)
181 TIGR01522 ATPase-IIA2_Ca golgi 84.4 4.9 0.00011 48.2 10.0 90 395-495 524-639 (884)
182 PLN03064 alpha,alpha-trehalose 84.0 1.7 3.8E-05 52.3 6.0 59 376-437 590-657 (934)
183 TIGR01106 ATPase-IIC_X-K sodiu 83.9 5.6 0.00012 48.4 10.4 94 395-495 564-705 (997)
184 PLN03063 alpha,alpha-trehalose 83.1 2.8 6.2E-05 49.7 7.3 60 376-438 506-568 (797)
185 COG4359 Uncharacterized conser 82.8 1.3 2.9E-05 43.9 3.7 16 378-393 4-19 (220)
186 TIGR01494 ATPase_P-type ATPase 81.9 7.4 0.00016 43.3 9.6 85 395-495 343-428 (499)
187 COG4087 Soluble P-type ATPase 81.6 9.8 0.00021 36.1 8.7 104 381-505 18-122 (152)
188 TIGR01493 HAD-SF-IA-v2 Haloaci 80.7 0.67 1.5E-05 43.2 0.8 15 379-393 1-15 (175)
189 PRK01122 potassium-transportin 79.6 12 0.00025 44.0 10.5 101 378-494 426-528 (679)
190 TIGR01524 ATPase-IIIB_Mg magne 79.1 11 0.00024 45.3 10.3 94 395-495 511-624 (867)
191 KOG1692|consensus 78.6 11 0.00024 37.6 8.4 86 309-415 55-140 (201)
192 PLN02811 hydrolase 78.4 8.3 0.00018 37.8 7.7 94 400-496 78-180 (220)
193 PF15418 DUF4625: Domain of un 77.9 23 0.00051 33.1 10.1 97 272-372 18-131 (132)
194 PTZ00445 p36-lilke protein; Pr 76.9 4.1 8.9E-05 41.2 5.0 125 373-498 39-203 (219)
195 TIGR01517 ATPase-IIB_Ca plasma 76.1 14 0.0003 44.8 10.1 88 395-493 575-688 (941)
196 PRK14010 potassium-transportin 75.3 11 0.00024 44.1 8.7 87 395-494 437-524 (673)
197 TIGR01523 ATPase-IID_K-Na pota 75.1 15 0.00032 45.1 10.1 94 395-495 642-767 (1053)
198 COG1609 PurR Transcriptional r 74.9 33 0.00071 36.2 11.5 102 401-505 159-273 (333)
199 PF08400 phage_tail_N: Prophag 74.9 14 0.0003 34.8 7.7 75 327-415 38-112 (134)
200 KOG3040|consensus 73.6 9 0.0002 39.0 6.4 57 377-440 7-63 (262)
201 PF10342 GPI-anchored: Ser-Thr 72.5 20 0.00044 30.0 7.6 72 286-363 8-82 (93)
202 TIGR01544 HAD-SF-IE haloacid d 72.3 26 0.00056 36.8 9.8 103 398-505 119-242 (277)
203 cd06279 PBP1_LacI_like_3 Ligan 71.0 66 0.0014 32.0 12.2 125 376-505 79-231 (283)
204 PRK10517 magnesium-transportin 70.9 20 0.00044 43.3 9.8 93 395-494 546-658 (902)
205 PF00702 Hydrolase: haloacid d 70.6 2.1 4.5E-05 40.7 1.2 39 462-501 133-173 (215)
206 cd06291 PBP1_Qymf_like Ligand 69.4 81 0.0018 30.7 12.2 122 376-505 75-209 (265)
207 PRK15122 magnesium-transportin 69.0 25 0.00054 42.5 10.0 94 395-495 546-659 (903)
208 cd01421 IMPCH Inosine monophos 68.2 6.6 0.00014 38.9 4.1 91 402-505 10-100 (187)
209 cd06296 PBP1_CatR_like Ligand- 67.6 74 0.0016 31.0 11.5 106 395-504 97-213 (270)
210 cd06287 PBP1_LacI_like_8 Ligan 66.5 1.1E+02 0.0024 30.5 12.7 100 401-503 102-212 (269)
211 PF05152 DUF705: Protein of un 66.4 23 0.0005 37.4 7.8 70 376-452 121-192 (297)
212 KOG3120|consensus 66.3 12 0.00026 38.3 5.6 40 400-442 84-124 (256)
213 PLN03190 aminophospholipid tra 65.8 27 0.00058 43.6 9.5 67 459-534 857-928 (1178)
214 cd06294 PBP1_ycjW_transcriptio 65.8 1.1E+02 0.0023 29.8 12.2 107 395-505 102-219 (270)
215 KOG1605|consensus 65.1 2.7 5.9E-05 43.6 0.8 65 374-439 86-169 (262)
216 PF06189 5-nucleotidase: 5'-nu 64.7 22 0.00047 37.1 7.2 91 379-477 123-239 (264)
217 cd06286 PBP1_CcpB_like Ligand- 64.2 84 0.0018 30.5 11.1 108 394-506 93-212 (260)
218 PRK14987 gluconate operon tran 63.3 1.2E+02 0.0026 31.0 12.5 102 401-505 164-275 (331)
219 cd01544 PBP1_GalR Ligand-bindi 63.0 1.1E+02 0.0024 30.1 11.8 101 402-505 97-215 (270)
220 TIGR01657 P-ATPase-V P-type AT 61.7 40 0.00086 41.5 9.9 37 395-432 652-688 (1054)
221 KOG1618|consensus 61.1 13 0.00028 40.0 4.9 67 376-449 34-107 (389)
222 PRK13402 gamma-glutamyl kinase 61.1 96 0.0021 33.8 11.7 128 376-504 4-170 (368)
223 cd06292 PBP1_LacI_like_10 Liga 59.6 1.3E+02 0.0027 29.5 11.5 106 395-505 102-217 (273)
224 PRK00881 purH bifunctional pho 59.1 16 0.00035 41.4 5.6 91 402-504 14-104 (513)
225 PRK05429 gamma-glutamyl kinase 57.6 88 0.0019 33.9 10.7 128 377-505 8-175 (372)
226 PRK09526 lacI lac repressor; R 57.5 1.7E+02 0.0037 29.9 12.5 100 402-505 166-276 (342)
227 PRK12314 gamma-glutamyl kinase 57.0 1.6E+02 0.0034 30.4 12.0 131 377-508 9-181 (266)
228 cd06301 PBP1_rhizopine_binding 55.8 2.1E+02 0.0045 28.0 12.6 100 402-505 106-218 (272)
229 cd06299 PBP1_LacI_like_13 Liga 55.4 1.4E+02 0.0031 28.9 11.0 99 402-503 101-209 (265)
230 COG0474 MgtA Cation transport 55.3 49 0.0011 40.2 9.1 91 396-493 544-658 (917)
231 TIGR01481 ccpA catabolite cont 55.3 1.4E+02 0.0031 30.3 11.4 101 402-505 161-272 (329)
232 PRK11303 DNA-binding transcrip 54.6 2.1E+02 0.0046 29.0 12.6 99 402-504 164-273 (328)
233 PF02142 MGS: MGS-like domain 54.4 24 0.00053 30.3 4.8 37 404-448 1-37 (95)
234 PRK10703 DNA-binding transcrip 54.3 1.5E+02 0.0033 30.3 11.5 101 403-505 164-275 (341)
235 cd06319 PBP1_ABC_sugar_binding 54.1 2E+02 0.0042 28.1 11.8 85 418-506 127-220 (277)
236 smart00851 MGS MGS-like domain 53.7 21 0.00047 30.3 4.3 33 405-445 2-34 (90)
237 PLN02177 glycerol-3-phosphate 51.5 7.6 0.00016 43.8 1.5 84 411-504 118-215 (497)
238 PRK10339 DNA-binding transcrip 51.3 1.8E+02 0.0039 29.8 11.4 102 402-506 159-271 (327)
239 cd06302 PBP1_LsrB_Quorum_Sensi 50.8 2.8E+02 0.0061 28.0 12.8 101 402-505 106-219 (298)
240 cd06285 PBP1_LacI_like_7 Ligan 49.8 2.2E+02 0.0048 27.7 11.4 103 402-506 99-212 (265)
241 cd01540 PBP1_arabinose_binding 49.6 2.7E+02 0.0058 27.5 12.3 96 408-504 118-228 (289)
242 PF00162 PGK: Phosphoglycerate 49.5 53 0.0011 36.1 7.4 82 403-484 34-151 (384)
243 KOG0202|consensus 49.2 1E+02 0.0022 37.3 10.0 124 397-530 582-733 (972)
244 cd06297 PBP1_LacI_like_12 Liga 48.9 2.5E+02 0.0054 27.7 11.7 123 376-506 78-217 (269)
245 PF14734 DUF4469: Domain of un 48.5 51 0.0011 29.6 5.9 73 282-360 11-86 (102)
246 PF10517 DM13: Electron transf 47.8 71 0.0015 28.3 6.8 66 277-347 8-84 (108)
247 cd06306 PBP1_TorT-like TorT-li 47.7 2.2E+02 0.0048 28.1 11.1 104 395-505 100-217 (268)
248 cd06324 PBP1_ABC_sugar_binding 47.7 2.8E+02 0.0061 28.1 12.1 100 402-505 119-238 (305)
249 cd00532 MGS-like MGS-like doma 47.6 38 0.00082 30.1 5.1 40 402-449 11-50 (112)
250 cd06283 PBP1_RegR_EndR_KdgR_li 47.0 2.7E+02 0.0059 26.8 12.1 106 395-504 96-213 (267)
251 TIGR00355 purH phosphoribosyla 46.5 32 0.00068 39.1 5.2 39 402-448 10-48 (511)
252 cd00421 intradiol_dioxygenase 46.4 1.4E+02 0.0031 28.0 8.9 80 288-372 7-105 (146)
253 cd06272 PBP1_hexuronate_repres 46.3 2.1E+02 0.0046 27.7 10.6 124 376-506 74-209 (261)
254 KOG2134|consensus 46.3 22 0.00047 39.1 3.8 98 370-467 68-181 (422)
255 cd06314 PBP1_tmGBP Periplasmic 46.2 1.7E+02 0.0037 28.7 10.1 105 395-506 98-214 (271)
256 PF01835 A2M_N: MG2 domain; I 44.6 2E+02 0.0043 24.4 9.8 49 312-360 37-86 (99)
257 cd01574 PBP1_LacI Ligand-bindi 44.2 3E+02 0.0066 26.5 12.1 123 376-506 79-211 (264)
258 PF05738 Cna_B: Cna protein B- 43.8 97 0.0021 24.6 6.5 27 329-360 20-46 (70)
259 cd01545 PBP1_SalR Ligand-bindi 43.7 3.1E+02 0.0067 26.5 11.7 125 376-506 80-216 (270)
260 cd06275 PBP1_PurR Ligand-bindi 43.4 3.1E+02 0.0066 26.6 11.3 102 402-505 102-214 (269)
261 cd01575 PBP1_GntR Ligand-bindi 43.3 2.9E+02 0.0062 26.7 11.0 108 395-506 96-214 (268)
262 cd04242 AAK_G5K_ProB AAK_G5K_P 43.1 2.4E+02 0.0053 28.5 10.7 105 402-506 23-167 (251)
263 cd06280 PBP1_LacI_like_4 Ligan 43.0 3.2E+02 0.007 26.6 11.4 104 395-505 95-208 (263)
264 cd06270 PBP1_GalS_like Ligand 42.4 3.3E+02 0.0072 26.5 12.2 104 395-503 96-211 (268)
265 cd06281 PBP1_LacI_like_5 Ligan 42.4 2.7E+02 0.0058 27.2 10.7 99 402-504 101-211 (269)
266 cd06298 PBP1_CcpA_like Ligand- 41.7 3.3E+02 0.0072 26.3 11.3 102 402-505 101-213 (268)
267 cd06277 PBP1_LacI_like_1 Ligan 40.1 1.5E+02 0.0032 29.0 8.4 104 395-505 98-213 (268)
268 cd06282 PBP1_GntR_like_2 Ligan 39.8 3.5E+02 0.0076 26.0 11.8 100 402-505 101-212 (266)
269 cd06307 PBP1_uncharacterized_s 39.1 3.8E+02 0.0083 26.2 12.7 107 395-506 102-220 (275)
270 cd06274 PBP1_FruR Ligand bindi 38.9 3.7E+02 0.0081 26.0 11.8 100 402-503 101-212 (264)
271 TIGR02417 fruct_sucro_rep D-fr 38.7 4.1E+02 0.0089 27.0 11.7 99 401-503 162-271 (327)
272 cd06320 PBP1_allose_binding Pe 38.6 2.7E+02 0.0059 27.2 10.1 100 402-506 105-217 (275)
273 cd00318 Phosphoglycerate_kinas 37.6 88 0.0019 34.6 6.9 92 404-496 34-163 (397)
274 cd06288 PBP1_sucrose_transcrip 37.0 3.9E+02 0.0086 25.8 11.4 103 402-506 101-214 (269)
275 PRK10727 DNA-binding transcrip 36.9 2.9E+02 0.0063 28.4 10.4 102 402-505 161-273 (343)
276 cd01423 MGS_CPS_I_III Methylgl 36.8 67 0.0014 28.5 4.9 40 402-449 12-51 (116)
277 PLN02499 glycerol-3-phosphate 36.6 20 0.00043 40.6 1.8 69 408-482 101-180 (498)
278 PRK10401 DNA-binding transcrip 36.0 3.6E+02 0.0077 27.8 10.9 102 402-505 161-273 (346)
279 KOG3189|consensus 35.7 54 0.0012 33.3 4.4 39 379-424 13-51 (252)
280 PF14524 Wzt_C: Wzt C-terminal 35.5 2.1E+02 0.0046 25.2 8.0 91 287-386 31-130 (142)
281 PRK14558 pyrH uridylate kinase 33.0 3.2E+02 0.007 27.2 9.7 119 380-503 3-154 (231)
282 PF15250 Raftlin: Raftlin 31.9 26 0.00056 39.2 1.7 49 281-341 341-397 (457)
283 PRK11041 DNA-binding transcrip 31.0 4.2E+02 0.0091 26.4 10.2 101 402-505 137-249 (309)
284 TIGR02405 trehalos_R_Ecol treh 31.0 5.1E+02 0.011 26.2 11.0 96 402-505 157-262 (311)
285 cd06290 PBP1_LacI_like_9 Ligan 30.9 5E+02 0.011 25.1 11.5 103 401-505 99-212 (265)
286 PF06434 Aconitase_2_N: Aconit 30.7 73 0.0016 32.0 4.4 95 379-482 1-123 (204)
287 cd01424 MGS_CPS_II Methylglyox 30.6 90 0.0019 27.3 4.7 40 402-449 12-51 (110)
288 PRK10423 transcriptional repre 30.4 5.7E+02 0.012 25.8 11.2 101 402-505 159-271 (327)
289 TIGR02468 sucrsPsyn_pln sucros 30.4 1E+02 0.0022 38.2 6.4 58 372-443 765-828 (1050)
290 TIGR02438 catachol_actin catec 30.3 87 0.0019 33.1 5.2 60 289-355 129-199 (281)
291 COG3485 PcaH Protocatechuate 3 30.3 91 0.002 31.9 5.2 63 323-391 116-192 (226)
292 TIGR01652 ATPase-Plipid phosph 30.2 1.7E+02 0.0037 36.1 8.5 33 395-428 627-659 (1057)
293 cd06308 PBP1_sensor_kinase_lik 29.8 5.3E+02 0.012 25.1 11.3 104 395-505 100-216 (270)
294 COG4502 5'(3')-deoxyribonucleo 29.7 1.2E+02 0.0026 29.3 5.5 51 400-451 68-122 (180)
295 PF13377 Peripla_BP_3: Peripla 29.4 2.2E+02 0.0049 25.4 7.2 93 409-504 1-103 (160)
296 PF10698 DUF2505: Protein of u 29.1 1.9E+02 0.0041 27.3 6.9 50 360-412 98-147 (159)
297 PLN03034 phosphoglycerate kina 28.9 1.1E+02 0.0024 34.6 6.0 43 441-483 184-228 (481)
298 PF13620 CarboxypepD_reg: Carb 28.3 1.2E+02 0.0026 24.6 4.7 57 311-376 17-73 (82)
299 PF12245 Big_3_2: Bacterial Ig 28.1 1.4E+02 0.0031 23.8 5.0 42 333-376 7-51 (60)
300 PF10670 DUF4198: Domain of un 28.1 2.1E+02 0.0047 27.4 7.3 29 327-360 184-212 (215)
301 KOG3085|consensus 27.7 1.6E+02 0.0036 30.3 6.5 97 397-500 110-213 (237)
302 cd06321 PBP1_ABC_sugar_binding 27.5 5.8E+02 0.013 24.8 11.7 104 395-505 99-214 (271)
303 PLN02282 phosphoglycerate kina 27.3 1.7E+02 0.0038 32.4 7.0 80 404-483 44-153 (401)
304 PF00578 AhpC-TSA: AhpC/TSA fa 27.1 1.3E+02 0.0028 25.9 5.1 43 402-447 45-87 (124)
305 PRK00073 pgk phosphoglycerate 27.0 2.9E+02 0.0062 30.6 8.6 81 403-483 36-146 (389)
306 cd06313 PBP1_ABC_sugar_binding 26.9 6.2E+02 0.014 25.0 12.8 103 395-505 101-216 (272)
307 cd01542 PBP1_TreR_like Ligand- 26.6 5.8E+02 0.013 24.5 11.2 100 402-505 99-209 (259)
308 PRK10014 DNA-binding transcrip 26.5 7E+02 0.015 25.4 12.8 101 402-504 167-287 (342)
309 cd06271 PBP1_AglR_RafR_like Li 26.1 5.9E+02 0.013 24.4 11.9 100 402-504 105-216 (268)
310 PF02494 HYR: HYR domain; Int 25.6 1.6E+02 0.0034 24.4 5.1 44 329-372 32-81 (81)
311 cd04256 AAK_P5CS_ProBA AAK_P5C 25.6 7E+02 0.015 26.1 10.9 75 434-508 110-205 (284)
312 PLN02891 IMP cyclohydrolase 25.5 84 0.0018 36.0 4.3 91 403-505 33-123 (547)
313 PRK09492 treR trehalose repres 25.3 7E+02 0.015 25.0 11.0 96 401-504 159-264 (315)
314 COG1436 NtpG Archaeal/vacuolar 25.3 84 0.0018 28.4 3.5 47 404-450 34-81 (104)
315 TIGR01092 P5CS delta l-pyrroli 25.1 6.4E+02 0.014 29.9 11.7 127 377-505 7-191 (715)
316 PRK13717 conjugal transfer pro 24.9 65 0.0014 30.2 2.7 50 374-423 42-102 (128)
317 cd03463 3,4-PCD_alpha Protocat 24.1 4E+02 0.0086 26.4 8.3 60 289-355 33-107 (185)
318 cd03012 TlpA_like_DipZ_like Tl 24.0 1.4E+02 0.003 26.4 4.8 44 402-445 42-88 (126)
319 cd06418 GH25_BacA-like BacA is 23.8 3.2E+02 0.0068 27.5 7.7 44 407-450 24-74 (212)
320 KOG4549|consensus 23.2 2.4E+02 0.0052 26.8 6.1 82 353-446 4-88 (144)
321 PF11974 MG1: Alpha-2-macroglo 22.9 2.6E+02 0.0057 24.5 6.1 61 311-386 31-94 (97)
322 PRK10638 glutaredoxin 3; Provi 22.9 4.3E+02 0.0093 21.7 7.4 32 418-449 3-34 (83)
323 cd06323 PBP1_ribose_binding Pe 22.9 6.8E+02 0.015 24.0 11.9 104 395-506 99-215 (268)
324 COG2265 TrmA SAM-dependent met 21.9 1.2E+02 0.0026 33.8 4.6 41 400-440 370-412 (432)
325 KOG4752|consensus 21.9 31 0.00066 23.3 0.0 9 261-269 2-10 (26)
326 cd06278 PBP1_LacI_like_2 Ligan 21.9 7.1E+02 0.015 23.8 11.4 122 376-504 77-210 (266)
327 cd06293 PBP1_LacI_like_11 Liga 21.5 7.5E+02 0.016 24.0 11.8 102 401-504 100-212 (269)
328 PF08924 DUF1906: Domain of un 21.3 50 0.0011 30.8 1.4 45 407-451 8-61 (136)
329 PRK10530 pyridoxal phosphate ( 21.2 3.3E+02 0.0073 27.0 7.4 41 460-504 199-242 (272)
330 cd06273 PBP1_GntR_like_1 This 21.1 7.5E+02 0.016 23.8 10.2 102 401-505 100-214 (268)
331 PF10281 Ish1: Putative stress 21.0 77 0.0017 23.0 2.0 19 428-446 4-22 (38)
332 cd06267 PBP1_LacI_sugar_bindin 20.6 7.2E+02 0.016 23.4 12.3 103 402-505 101-213 (264)
333 PRK05234 mgsA methylglyoxal sy 20.6 1.6E+02 0.0036 27.7 4.6 38 402-447 16-56 (142)
334 PF14289 DUF4369: Domain of un 20.5 5.1E+02 0.011 21.7 8.0 61 291-364 11-72 (106)
335 cd06284 PBP1_LacI_like_6 Ligan 20.3 7.7E+02 0.017 23.6 12.5 102 402-505 100-212 (267)
336 COG0052 RpsB Ribosomal protein 20.1 3.4E+02 0.0074 28.3 7.1 68 377-456 36-103 (252)
No 1
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=100.00 E-value=5.1e-42 Score=358.32 Aligned_cols=256 Identities=23% Similarity=0.368 Sum_probs=228.6
Q ss_pred eeccCCCcccceeEEecCCceeEEEeeecCCCcceeee--EeEEEEec-CCCCcEEEEEEEEeCCCccEEEecC--CCCc
Q psy4654 273 IKNATANHRANDVIVKEGLPQTLVARFMYGPFDMFTLT--VDVHLIKE-PPSGEWVLMSTEVTDKTGRVSYTLP--EDHK 347 (559)
Q Consensus 273 ~~~~~~~Hr~~d~i~~~~~~~~~~~~F~yg~~d~~~l~--vdi~~~~~-~~~g~w~~~~t~~t~s~gri~~~~p--~~~~ 347 (559)
+..+.+.|...|.|+.-..+|.+.|+|.|++....... +.|+...- .+++.|...|..++|-+|.|.++.+ ..++
T Consensus 266 ~t~l~p~~~~s~evy~~~pp~~~~~~fl~s~~r~s~a~d~~sile~~hs~s~~s~~~~g~~~~d~~~tiklnsdqLr~Ln 345 (580)
T COG5083 266 VTKLHPHHNGSDEVYGKNPPQSISGDFLYSDVRVSLANDEVSILEYSHSSSEPSWNKIGEAVTDYNGTIKLNSDQLRNLN 345 (580)
T ss_pred hhccCCCcCCcceeEeeCCccccccccccCCcchhhhHHHHHHHHhhhhcccccccccceeeecccceEEcCChHHhccc
Confidence 34677888899999999999999999999999886664 77777663 5677799999999999999999999 8899
Q ss_pred CCCCccceEEEEcCCceeEEEEEEeeCCCCeeEEEeeccceecccc------ccCCCcccchhHHHHHHHHHHCCCeEEE
Q psy4654 348 LSYGMYPVKMVVRGDHTSVDFYLAVVPPRTEVVVFSVDGSFTASVS------VTGRDPKVRAGAVDIVRHWQELGYLIIY 421 (559)
Q Consensus 348 L~~G~y~vkmvV~gd~t~~~~~i~v~~~~~k~VIfDIDGTlt~sd~------~~g~D~~~~~GA~elv~~l~~~GY~IIY 421 (559)
|++|.|.++|.|+|+.++|+++|+||.++.|+||||||||||+||. .+|+|| +|.|||.++..+..|||+|.|
T Consensus 346 LkyGkn~lkf~V~g~~a~~t~~ifvwr~n~kiVVsDiDGTITkSD~~Ghv~~miGkdw-th~gVAkLYtdI~rNGYkI~Y 424 (580)
T COG5083 346 LKYGKNLLKFYVEGGKAIATMYIFVWRNNKKIVVSDIDGTITKSDALGHVKQMIGKDW-THNGVAKLYTDIDRNGYKIKY 424 (580)
T ss_pred CccCcceEEEEEcCCccEEEEEEEEEeCCCcEEEEecCCcEEehhhHHHHHHHhccch-hhcchhhhhhhhccCceEEEE
Confidence 9999999999999999999999999999999999999999999996 499997 899999999999999999999
Q ss_pred EecCCchhhHHHHHHHh---h--CCCCCceeEecC----------CCCCChhhHHHHHHHHHhhc--cCCcEEEEeCC-c
Q psy4654 422 ITGRPDMQQGRVLSWLS---Q--HNFPHGLVSFAD----------GLSPGFLGHKASYLKSLIQD--HGVVIHAAYGS-N 483 (559)
Q Consensus 422 LTaRp~~~~~~T~~WL~---q--hglP~G~L~lr~----------g~~~dp~~~K~~~L~~L~~~--~~~~i~aafGN-~ 483 (559)
+|+|+.+|+..|+.+|+ | ..+|.||++|.. .+-++||.||++||++|... ...||+||||| .
T Consensus 425 ltsR~~Gqa~sTrsylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayLndl~slf~e~~PFyAGFGNri 504 (580)
T COG5083 425 LTSRSYGQADSTRSYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLFIEFDPFYAGFGNRI 504 (580)
T ss_pred EecccccchhhhhhHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHHHHhhCcCChhhccccccc
Confidence 99999999999999996 3 469999999853 36789999999999999642 22489999999 8
Q ss_pred cchhHHHhcCCCCCcEEEEcCCCcccccccee-cchhHHHHHHHHhhc
Q psy4654 484 KDVSVYTSVGLKPRSIYIVGKVSKKHQSQATV-LSDGYAAHLTALQQH 530 (559)
Q Consensus 484 ~DV~aYr~vGI~~~~If~i~~~~~~~~~~~~~-~~~~Y~~hL~~l~~~ 530 (559)
+||.+|+.+|||++||||||..|+.+.+..+. ..++| -|+.++++|
T Consensus 505 TDvisY~~vgIp~SrIFTIn~~gev~~ell~~sy~~sy-~~mne~VDh 551 (580)
T COG5083 505 TDVISYSNVGIPKSRIFTINKNGEVHGELLIVSYRSSY-KQMNELVDH 551 (580)
T ss_pred hhheeeccccCChhheEEeccCCcEEEEEEEeehhhHH-HHHhhhhhh
Confidence 99999999999999999999999887665555 45566 599999987
No 2
>KOG2116|consensus
Probab=100.00 E-value=2.2e-41 Score=366.98 Aligned_cols=190 Identities=21% Similarity=0.305 Sum_probs=173.5
Q ss_pred EEecCCCCcCCCCccceEEEEc---CCceeEEEEEEeeCCCCeeEEEeeccceecccc------ccCCCcccchhHHHHH
Q psy4654 339 SYTLPEDHKLSYGMYPVKMVVR---GDHTSVDFYLAVVPPRTEVVVFSVDGSFTASVS------VTGRDPKVRAGAVDIV 409 (559)
Q Consensus 339 ~~~~p~~~~L~~G~y~vkmvV~---gd~t~~~~~i~v~~~~~k~VIfDIDGTlt~sd~------~~g~D~~~~~GA~elv 409 (559)
+-+.-+..+|+.|.|.|.|.|. +..+.|+|.||+|.|++|+||+|||||||+||. .+|+|| +|.||++||
T Consensus 489 tSEQL~sLnLk~G~N~v~FsisT~~~Gt~~c~~~IYlWkWn~kIVISDIDGTITKSDvLGh~lp~iGkDW-Th~GVAkLy 567 (738)
T KOG2116|consen 489 TSEQLKSLNLKDGKNDVVFSISTQYQGTAQCEGNIYLWKWNDKIVISDIDGTITKSDVLGHVLPMIGKDW-THTGVAKLY 567 (738)
T ss_pred CHHHHhhcCCccCCceeEEEEEecccceEEEeeEEEEEecCCcEEEecCCCceEhhhhhhhhhhhhcCcc-hhhhHHHHH
Confidence 3334456789999999999999 889999999999999999999999999999996 499997 999999999
Q ss_pred HHHHHCCCeEEEEecCCchhhHHHHHHHh---hC--CCCCceeEec----------CCCCCChhhHHHHHHHHHhh---c
Q psy4654 410 RHWQELGYLIIYITGRPDMQQGRVLSWLS---QH--NFPHGLVSFA----------DGLSPGFLGHKASYLKSLIQ---D 471 (559)
Q Consensus 410 ~~l~~~GY~IIYLTaRp~~~~~~T~~WL~---qh--glP~G~L~lr----------~g~~~dp~~~K~~~L~~L~~---~ 471 (559)
.++.+|||+|+|||||+++|+..||.||. |. .||.|||+++ ++|.+.|+.||++||++|.+ .
T Consensus 568 t~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DIk~LF~p 647 (738)
T KOG2116|consen 568 TKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDIKNLFPP 647 (738)
T ss_pred HHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHHHHhcCC
Confidence 99999999999999999999999998885 43 5999999985 45899999999999998754 4
Q ss_pred cCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCccccccceecchhHHHHHHHHhhc
Q psy4654 472 HGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKKHQSQATVLSDGYAAHLTALQQH 530 (559)
Q Consensus 472 ~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~~~~~~~~~~~~Y~~hL~~l~~~ 530 (559)
.+.|||||||| .+|+.+|++||||..|||||||+|+..++..+.+..+|. +|.+||++
T Consensus 648 ~~nPFYAgFGNR~TDviSY~~VgVP~~RIFtINpkGEv~~e~~~~~~~SY~-~l~elVd~ 706 (738)
T KOG2116|consen 648 SGNPFYAGFGNRITDVISYRQVGVPLSRIFTINPKGEVIQELLKTLKSSYV-RLNELVDH 706 (738)
T ss_pred CCCceeeecCCCcccceeeeeecCCccceEEECCCceehHHHHhhhhhhhh-hHHHHHHH
Confidence 67899999999 899999999999999999999999999888888999995 89999987
No 3
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=100.00 E-value=1.4e-37 Score=292.55 Aligned_cols=131 Identities=34% Similarity=0.553 Sum_probs=123.1
Q ss_pred eEEEeeccceecccc------ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC-----CCCCcee
Q psy4654 379 VVVFSVDGSFTASVS------VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH-----NFPHGLV 447 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~------~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh-----glP~G~L 447 (559)
+||||||||||+||. .+|+| |+|+||++++++|+++||+|+||||||++|++.|++||+++ +||.||+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d-~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv 79 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKD-WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPV 79 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCch-hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCE
Confidence 599999999999974 69999 59999999999999999999999999999999999999988 9999999
Q ss_pred Eec----------CCCCCChhhHHHHHHHHHhhc---cCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCcccc
Q psy4654 448 SFA----------DGLSPGFLGHKASYLKSLIQD---HGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKKHQ 510 (559)
Q Consensus 448 ~lr----------~g~~~dp~~~K~~~L~~L~~~---~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~~~ 510 (559)
+++ +++.++|+.||++||++|+.. .+++|++|||| .+|+.+|+++||+++||||||++|++.+
T Consensus 80 ~~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~rIF~I~~~g~~~~ 156 (157)
T PF08235_consen 80 LLSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKSRIFIINPKGEVKQ 156 (157)
T ss_pred EECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChhhEEEECCCCeEec
Confidence 997 678899999999999999764 68999999999 6999999999999999999999998765
No 4
>PF02862 DDHD: DDHD domain; InterPro: IPR004177 The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases.; GO: 0046872 metal ion binding
Probab=100.00 E-value=2.8e-37 Score=304.64 Aligned_cols=203 Identities=26% Similarity=0.348 Sum_probs=126.3
Q ss_pred CCchhhhhhhhccccccCCCC--CcccccCCCcccCCccccccccccCcCcccccccccccccccCCCCeecCCCccCCC
Q psy4654 23 NSSLAKWSSMELLNEEDESPS--PSVASRQGDVIQRPPVQQVYNLFHPTDPIAVRLEPLISARFSLLAPVNIPRYQQFPL 100 (559)
Q Consensus 23 ~sPlg~fl~~rll~~~~~~pr--~~~~~~~~~~~~~p~c~~~yNiFhp~DPvAyRlEPli~~~~~~l~P~~iP~~~~~pL 100 (559)
|||||+||+||..+ +.+| ..........+.+|+|.++||||||+|||||||||||+++|+.++|+.||++++.++
T Consensus 12 GSPlg~fl~lr~~~---~~~~~~~~~~~~~~~~~~~p~~~~~yNifhp~DPvAyRlEPli~~~~~~~~P~~ip~~~~~~~ 88 (227)
T PF02862_consen 12 GSPLGLFLTLRGAQ---IGARSASEYVTDEGSFYPCPACRRIYNIFHPYDPVAYRLEPLIDPRYADIKPVSIPRFKGGKL 88 (227)
T ss_pred CCCHHHHHHHhCcc---ccccccccccccccccccCCccccceeeeecCChHHHhHHHHHhhhhccCCCeecccccccCc
Confidence 79999999666554 4555 223344567899999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHhhh---hcccccccccccccccCCCCCCCCCCCCCcccccccccccchhhh-------hhhhccch
Q psy4654 101 GKSQSTSVAQALLIRMV---TQKWWGSKRIDYALYCPEGLANFPTNALPHLFHASFWESCDVIAF-------ILRQVNNL 170 (559)
Q Consensus 101 gdg~s~~l~d~l~~~~~---~~~~~~s~r~~~~~f~~~~~~~~~~~a~~~~~~~~~~~~~~~ss~-------~~~~~~~~ 170 (559)
++.+.....+.+...+. ...||+......+.+.... ....... ......++.... ........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~as~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (227)
T PF02862_consen 89 GHYESKKSISNIGSAISQNLSSTTSSLKNGFASSLRNSS------SSLSSND-SESSDSSDSSQSSSSSDSSASSNSESS 161 (227)
T ss_pred ccccccchhhHHHHhhhhhcccccccccccccccccccc------ccccccc-ccccccccccccccccccccccccccc
Confidence 87765444444433111 1123332221111110000 0000000 000000000000 00000000
Q ss_pred hhhh-hhhhcCCCchhhhccccCCceeEEEEeCCCccccccccccccccccccccccchHHHHHHHhhc
Q psy4654 171 LTYF-RAREIGKAPRKVTQKWWGSKRIDYALYCPEGLANFPTNALPHLFHASFWESCDVIAFILRQIGR 238 (559)
Q Consensus 171 ~~~~-~~~ei~~~~~~~~~~lng~kRIDY~L~cp~~l~~fp~valp~~~HaSYWes~Dva~FILrqv~r 238 (559)
.... ............+.+||+++||||+| |+++++.+|+++ +.||+|||+|+|||+||||||+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~RiDy~L--q~~~~~~~yl~~-l~sH~sYW~s~Dva~Fil~~l~~ 227 (227)
T PF02862_consen 162 TSNTESNEDSSSDAEKKLSKLNGNGRIDYVL--QEGVLENSYLSA-LTSHFSYWESKDVALFILKQLYR 227 (227)
T ss_pred ccccccccccchhhHHHHHhhcCCCccceec--CCCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHhC
Confidence 0000 00011122347889999999999999 466777889888 99999999999999999999986
No 5
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.95 E-value=2.1e-27 Score=223.61 Aligned_cols=131 Identities=34% Similarity=0.537 Sum_probs=119.1
Q ss_pred eEEEeeccceecccc------ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhh-----CCCCCcee
Q psy4654 379 VVVFSVDGSFTASVS------VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQ-----HNFPHGLV 447 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~------~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~q-----hglP~G~L 447 (559)
+|+|||||||++++. .+|+|+ +++++++++++++++||.|+|+|||+.++.+.|+.||.+ +++|.|++
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~-~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~l 79 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDW-THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPV 79 (157)
T ss_pred CEEEecCCCCcccccccccccccccCc-CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceE
Confidence 589999999999983 488885 899999999999999999999999999999999999998 78999999
Q ss_pred EecCC----------CCCChhhHHHHHHHHHhhc---cCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCcccc
Q psy4654 448 SFADG----------LSPGFLGHKASYLKSLIQD---HGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKKHQ 510 (559)
Q Consensus 448 ~lr~g----------~~~dp~~~K~~~L~~L~~~---~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~~~ 510 (559)
+++.+ +.++|+.+|.++|+.|++. .+++|+++||| .+|+.+|+++||+++|||+||+.|+..+
T Consensus 80 i~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 80 LLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSRIFTINPKGEVHQ 156 (157)
T ss_pred EEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhhEEEECCCCcccc
Confidence 99865 3678889999999998753 37899999999 8999999999999999999999987653
No 6
>KOG2308|consensus
Probab=99.93 E-value=1.2e-26 Score=258.15 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=115.3
Q ss_pred CCCchhhhhhhhccccccCCCCCcccccCCCcccCCccccccccccCcCcccccccccccccccCCCCeecCCCcc-CCC
Q psy4654 22 DNSSLAKWSSMELLNEEDESPSPSVASRQGDVIQRPPVQQVYNLFHPTDPIAVRLEPLISARFSLLAPVNIPRYQQ-FPL 100 (559)
Q Consensus 22 ~~sPlg~fl~~rll~~~~~~pr~~~~~~~~~~~~~p~c~~~yNiFhp~DPvAyRlEPli~~~~~~l~P~~iP~~~~-~pL 100 (559)
=|||||||+++|+...-| +..-.+.+|+|++|||||||+|||||||||||+++|+.++|+.|||+++ .+|
T Consensus 520 lGSPlgvFltlrG~d~~~---------~~~~~~~~p~C~~fyNIfHP~DPVAYRlEPlV~ke~~~i~Pv~Iph~r~~~~L 590 (741)
T KOG2308|consen 520 LGSPLGVFLTLRGIDSYN---------ELSRIVSRPACKRFYNIFHPTDPVAYRLEPLVVKEMAHIRPVKIPHHRGSKRL 590 (741)
T ss_pred ecCchhhhheeccccccc---------ccccccccccccchhhcCCCCCchheecccccchhhcccCceeccccCCccch
Confidence 479999999888655422 2223689999999999999999999999999999999999999999987 222
Q ss_pred CCCCchhHHHHHHH--hhhhcccccccccccccccC-CCCCCCCCCCCCcccccccccccchh--hhhhhh-ccchhhhh
Q psy4654 101 GKSQSTSVAQALLI--RMVTQKWWGSKRIDYALYCP-EGLANFPTNALPHLFHASFWESCDVI--AFILRQ-VNNLLTYF 174 (559)
Q Consensus 101 gdg~s~~l~d~l~~--~~~~~~~~~s~r~~~~~f~~-~~~~~~~~~a~~~~~~~~~~~~~~~s--s~~~~~-~~~~~~~~ 174 (559)
- ..+.+.+.. .-.++.+..+.|+.++-.+. +......... -..+....+..++.. +.++.. +...+. .
T Consensus 591 ~----~~~~~~~~~~~a~~~~~~~~~~ks~~~~~~~~~s~~~~~~e~-e~~~es~~~~~g~~~~~~~~~~~k~~~~~~-~ 664 (741)
T KOG2308|consen 591 H----SELKEFLEDIGADLKQSFNDGLKSLQSNKNSLESATVVSKEN-ETTAESEDRSTGETADNSAVAAKKAVKKPD-G 664 (741)
T ss_pred h----hhhccchhhhhhhcccccccchhccccccccccccccccccc-hhhhhhhcccccccccchhhhhhhhhcCCc-c
Confidence 1 111111110 00122222223332222110 1100000000 000000000000000 000000 000000 0
Q ss_pred hhhhc-CCCchhhhccccCCceeEEEEeCCCcccccc--ccccccccccccccccchHHHHHHHhhcccC
Q psy4654 175 RAREI-GKAPRKVTQKWWGSKRIDYALYCPEGLANFP--TNALPHLFHASFWESCDVIAFILRQIGRFDM 241 (559)
Q Consensus 175 ~~~ei-~~~~~~~~~~lng~kRIDY~L~cp~~l~~fp--~valp~~~HaSYWes~Dva~FILrqv~r~~~ 241 (559)
.+... .......++.+|.++|+||++++ +.+.+++ |+.+ +++|++||.|+|+|.|+|.|+|+..+
T Consensus 665 ~a~~~~~~~~~~~lg~Ln~~~r~d~~~~e-~~~e~~~~eylsa-~sshs~yW~s~d~a~fl~~e~y~~~~ 732 (741)
T KOG2308|consen 665 TASDPRMTPSDLRLGFLNATSRLDYVFQE-APIESSNLEYLSA-LSSHSEYWSSEDLALFLLTELYRSFG 732 (741)
T ss_pred cccChhhccccchhhhhcccccccccccc-cchhhhhHHHHhh-hcccccceecchhHHHHHHHHHHhcc
Confidence 00000 01122478999999999999965 3334444 6777 89999999999999999999999887
No 7
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.40 E-value=9.5e-13 Score=120.63 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=63.5
Q ss_pred CeeEEEeeccceeccccc-cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhH------------HHHHHHhhCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSV-TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQG------------RVLSWLSQHNFP 443 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~-~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~------------~T~~WL~qhglP 443 (559)
+|+|+|||||||...+.. .-.+ .+.+++++.++.|+++|+.|+++|||+..... .|.+||++|++|
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y~~~-~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANV-APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred CCEEEEeCCCCcccCCCCccccc-ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC
Confidence 479999999999765421 1123 47899999999999999999999999998876 999999999999
Q ss_pred CceeEecC
Q psy4654 444 HGLVSFAD 451 (559)
Q Consensus 444 ~G~L~lr~ 451 (559)
|+.|+|+.
T Consensus 80 Yd~l~~~k 87 (126)
T TIGR01689 80 YDEIYVGK 87 (126)
T ss_pred CceEEeCC
Confidence 99999974
No 8
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=99.28 E-value=2.9e-11 Score=121.04 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=99.6
Q ss_pred CCCCeeEEEeeccceecccc---------------------ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHH
Q psy4654 374 PPRTEVVVFSVDGSFTASVS---------------------VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGR 432 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~---------------------~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~ 432 (559)
..+..+||||||-|+-.+.. ..++ +++.+++++++++++++|++|+|+|||++.+++.
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~-apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~ 152 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGA-APALPEGLKLYQKIIELGIKIFLLSGRWEELRNA 152 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCC-CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHH
Confidence 45789999999999877641 1333 4589999999999999999999999999999999
Q ss_pred HHHHHhhCCCC-CceeEecC--CCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCC-cEEEE
Q psy4654 433 VLSWLSQHNFP-HGLVSFAD--GLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPR-SIYIV 502 (559)
Q Consensus 433 T~~WL~qhglP-~G~L~lr~--g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~-~If~i 502 (559)
|.+||.++|+| ++.|+||+ ...++-..+|.+..++|. ..+..|...+|| -.|+ .|-+.. |+|-.
T Consensus 153 T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~-~~GYrIv~~iGDq~sDl-----~G~~~~~RtFKL 221 (229)
T TIGR01675 153 TLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLM-EEGYRIWGNIGDQWSDL-----LGSPPGRRTFKL 221 (229)
T ss_pred HHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHH-hCCceEEEEECCChHHh-----cCCCccCceeeC
Confidence 99999999999 68999996 344555678999999986 468999999999 5787 344443 77653
No 9
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=99.20 E-value=9.4e-12 Score=124.40 Aligned_cols=125 Identities=21% Similarity=0.321 Sum_probs=96.6
Q ss_pred CCCeeEEEeeccceecccc---------------------ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHH
Q psy4654 375 PRTEVVVFSVDGSFTASVS---------------------VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRV 433 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~---------------------~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T 433 (559)
.++.+||||||+|+-++.. ..+.+ ++.||++++++.++++|..|+|||+|++.+++.|
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~-~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKA-PAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGG-EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccC-cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 5789999999999875421 25555 5889999999999999999999999999999999
Q ss_pred HHHHhhCCCCC-ceeEecCCCC-C--ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcEEE
Q psy4654 434 LSWLSQHNFPH-GLVSFADGLS-P--GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSIYI 501 (559)
Q Consensus 434 ~~WL~qhglP~-G~L~lr~g~~-~--dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~If~ 501 (559)
++||.+.|++. +.++|++... . .-..+|....+.|. ..|..|...+|| ..|+...+..|-...+.|+
T Consensus 149 ~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~-~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~ 220 (229)
T PF03767_consen 149 EKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIE-KKGYRIIANIGDQLSDFSGAKTAGARAERWFK 220 (229)
T ss_dssp HHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHH-HTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE
T ss_pred HHHHHHcCCCccchhccccccccccccccccchHHHHHHH-HcCCcEEEEeCCCHHHhhcccccccccceEEE
Confidence 99999999997 8899986322 1 12358999999985 457999999999 6888874433333355554
No 10
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=99.17 E-value=1.6e-10 Score=118.05 Aligned_cols=133 Identities=18% Similarity=0.291 Sum_probs=101.7
Q ss_pred CCeeEEEeeccceecccc----------------------ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHH
Q psy4654 376 RTEVVVFSVDGSFTASVS----------------------VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRV 433 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~----------------------~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T 433 (559)
+..+||||||+|+.++.. ..+ ++++.++++++++.++++|++|+|||||++.+++.|
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~-~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKG-EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcc-cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 668999999999986531 022 345789999999999999999999999999999999
Q ss_pred HHHHhhCCCC-CceeEecCCC--CC-ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC--CCcEEEEcCCC
Q psy4654 434 LSWLSQHNFP-HGLVSFADGL--SP-GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK--PRSIYIVGKVS 506 (559)
Q Consensus 434 ~~WL~qhglP-~G~L~lr~g~--~~-dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~--~~~If~i~~~~ 506 (559)
.+||.++|+| ++.|+||+.. ++ +-..+|.+.-+++. ..|+.|...+|| -.|. .|-+ ..|.|-
T Consensus 179 ~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li-~eGYrIv~~iGDq~sDl-----~G~~~g~~RtFK----- 247 (275)
T TIGR01680 179 EANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLI-QEGYNIVGIIGDQWNDL-----KGEHRGAIRSFK----- 247 (275)
T ss_pred HHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHH-HcCceEEEEECCCHHhc-----cCCCccCcceec-----
Confidence 9999999997 5789999532 22 23468988888886 468999999999 5786 3443 246663
Q ss_pred ccccccceecchhHHH
Q psy4654 507 KKHQSQATVLSDGYAA 522 (559)
Q Consensus 507 ~~~~~~~~~~~~~Y~~ 522 (559)
+.+.|...++++.+
T Consensus 248 --LPNP~~~~~~~~~~ 261 (275)
T TIGR01680 248 --LPNPCTTFSSSFTS 261 (275)
T ss_pred --CCCccccccccccc
Confidence 33445555566543
No 11
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.13 E-value=2.9e-10 Score=114.48 Aligned_cols=120 Identities=22% Similarity=0.279 Sum_probs=90.2
Q ss_pred CCCCe-eEEEeeccceeccccc----------------------------cCCCcccchhHHHHHHHHHHCCCeEEEEec
Q psy4654 374 PPRTE-VVVFSVDGSFTASVSV----------------------------TGRDPKVRAGAVDIVRHWQELGYLIIYITG 424 (559)
Q Consensus 374 ~~~~k-~VIfDIDGTlt~sd~~----------------------------~g~D~~~~~GA~elv~~l~~~GY~IIYLTa 424 (559)
...++ +|+||||||++++... ......+.+||.+++++++++|++|.|+|+
T Consensus 59 ~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTn 138 (237)
T PRK11009 59 EGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITG 138 (237)
T ss_pred cCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeC
Confidence 34445 9999999999996420 011244678899999999999999999999
Q ss_pred CCchhhHHHHHHHhh-CCCCCc---eeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcE
Q psy4654 425 RPDMQQGRVLSWLSQ-HNFPHG---LVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSI 499 (559)
Q Consensus 425 Rp~~~~~~T~~WL~q-hglP~G---~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~I 499 (559)
|+....+.|.+||.+ +|+|+. .+++.+....++ .|..+++++ ++ ..-+|| ..|+.+-+++|+..-++
T Consensus 139 R~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~--~K~~~l~~~----~i--~I~IGDs~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 139 RTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQY--TKTQWLKKK----NI--RIFYGDSDNDITAAREAGARGIRI 210 (237)
T ss_pred CCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCC--CHHHHHHhc----CC--eEEEcCCHHHHHHHHHcCCcEEEE
Confidence 999889999999987 899866 444544322222 466666654 44 444999 69999999999998777
Q ss_pred EE
Q psy4654 500 YI 501 (559)
Q Consensus 500 f~ 501 (559)
+-
T Consensus 211 ~~ 212 (237)
T PRK11009 211 LR 212 (237)
T ss_pred ec
Confidence 54
No 12
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.99 E-value=2.9e-09 Score=108.69 Aligned_cols=124 Identities=19% Similarity=0.318 Sum_probs=94.5
Q ss_pred CCCCeeEEEeeccceeccccc------cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCc--
Q psy4654 374 PPRTEVVVFSVDGSFTASVSV------TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHG-- 445 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~~------~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G-- 445 (559)
....+++++|+||||.+.... ...|..+.+|+.++++.|+++|+.++++|+|+...++.|.+||..++++++
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i 234 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDL 234 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhh
Confidence 334689999999999987642 112345899999999999999999999999999999999999998764443
Q ss_pred ------eeEecCC--CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcE
Q psy4654 446 ------LVSFADG--LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSI 499 (559)
Q Consensus 446 ------~L~lr~g--~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~I 499 (559)
.++||+. ..++| ..+..+|+.+.. ........+|| ..|+.+++++|+++-.+
T Consensus 235 ~~~~~~~~~~~~~~~~kp~p-~~~~~~l~~~~~-~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 235 IGRPPDMHFQREQGDKRPDD-VVKEEIFWEKIA-PKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred hCCcchhhhcccCCCCCCcH-HHHHHHHHHHhc-cCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 3445543 35555 467777776521 13467888999 79999999999987543
No 13
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.90 E-value=7.4e-09 Score=106.06 Aligned_cols=110 Identities=19% Similarity=0.283 Sum_probs=87.1
Q ss_pred CCCCeeEEEeeccceeccccc--------------------cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHH
Q psy4654 374 PPRTEVVVFSVDGSFTASVSV--------------------TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRV 433 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~~--------------------~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T 433 (559)
...+++||||||+|+.++... ...+.++.+||+++++.++++|+.++|+|+|+...++.|
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 356889999999999877621 112234789999999999999999999999999999999
Q ss_pred HHHHhhCCCCC---ceeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHH
Q psy4654 434 LSWLSQHNFPH---GLVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYT 490 (559)
Q Consensus 434 ~~WL~qhglP~---G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr 490 (559)
.+||.++|+|. ++|++++... .|....+.|.. +..|+.-+|| ..|+....
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~~~~-----~K~~rr~~I~~--~y~Ivl~vGD~~~Df~~~~ 205 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKKDKS-----SKESRRQKVQK--DYEIVLLFGDNLLDFDDFF 205 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCCCCC-----CcHHHHHHHHh--cCCEEEEECCCHHHhhhhh
Confidence 99999999985 5788886432 35555556643 6788999999 68886644
No 14
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.87 E-value=1.3e-08 Score=88.35 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=80.2
Q ss_pred eEEEeeccceeccccc--cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeEecCCC-
Q psy4654 379 VVVFSVDGSFTASVSV--TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVSFADGL- 453 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~--~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~lr~g~- 453 (559)
++|||+||||+..... ......+.+++.++++.++++|+.|+++|+|+ ...++.|+++.++ +...++...+.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLEELGLDDYFDPVITSNGAA 77 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHHHcCCchhhhheeccchhh
Confidence 4899999999988753 33334689999999999999999999999999 6777889999887 55555544321
Q ss_pred CC----------------ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCC
Q psy4654 454 SP----------------GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 454 ~~----------------dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.. +|...+...+.+.. .....-...+|| .+|+.+.+.+|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~igD~~~d~~~~~~~g~~~ 136 (139)
T cd01427 78 IYYPKEGLFLGGGPFDIGKPNPDKLLAALKLL-GVDPEEVLMVGDSLNDIEMAKAAGGLG 136 (139)
T ss_pred hhcccccccccccccccCCCCHHHHHHHHHHc-CCChhhEEEeCCCHHHHHHHHHcCCce
Confidence 11 23222222222221 222345678899 79999999888764
No 15
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.1e-09 Score=104.26 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=80.0
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCC
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+.+..+.+++|..++..|+++ ++++|+|||.-...+.|.+||.++++|++.|.+.+. ..|++|++.+ .+++
T Consensus 67 l~ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih~~~l~i~g~------h~KV~~vrth--~idl 137 (194)
T COG5663 67 LYKEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIHYDHLEIVGL------HHKVEAVRTH--NIDL 137 (194)
T ss_pred HHHHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccchhhhhhhcc------cccchhhHhh--ccCc
Confidence 344455678899999999886 999999999999999999999999999999998863 2589999999 7899
Q ss_pred cEEEEeCCccchhHHHhcCCCCCcEEEEcCC
Q psy4654 475 VIHAAYGSNKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
||++.+||+-.++ +.+|++.- .||.+
T Consensus 138 f~ed~~~na~~iA--k~~~~~vi---lins~ 163 (194)
T COG5663 138 FFEDSHDNAGQIA--KNAGIPVI---LINSP 163 (194)
T ss_pred cccccCchHHHHH--HhcCCcEE---EecCc
Confidence 9999999976544 55787653 44544
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.66 E-value=1.7e-07 Score=84.37 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=77.3
Q ss_pred eeEEEeeccceeccccccC-C-CcccchhHHHHHHHHHHCCCeEEEEecCCchh-----hHHHHHHHhhCCCCCceeEec
Q psy4654 378 EVVVFSVDGSFTASVSVTG-R-DPKVRAGAVDIVRHWQELGYLIIYITGRPDMQ-----QGRVLSWLSQHNFPHGLVSFA 450 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g-~-D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~-----~~~T~~WL~qhglP~G~L~lr 450 (559)
|+|+||+||||+++..... . ...+.+||.++++.|+++|+.++++|.++... .+.+..+|++.++++...+..
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 80 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYAC 80 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 6899999999996532221 1 13578999999999999999999999998443 456778888899986666555
Q ss_pred CCCCCChhhHHHHHHHHHhhcc-CCc--EEEEeCC--ccchhHHHhcCCCC
Q psy4654 451 DGLSPGFLGHKASYLKSLIQDH-GVV--IHAAYGS--NKDVSVYTSVGLKP 496 (559)
Q Consensus 451 ~g~~~dp~~~K~~~L~~L~~~~-~~~--i~aafGN--~~DV~aYr~vGI~~ 496 (559)
. ...+| |.+.+..++... ++. =..-.|| ..|+.+-+++|+..
T Consensus 81 ~-~~~KP---~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 81 P-HCRKP---KPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred C-CCCCC---ChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeE
Confidence 4 22233 222333322222 121 1344677 47999999999864
No 17
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.60 E-value=2.9e-07 Score=92.92 Aligned_cols=117 Identities=21% Similarity=0.333 Sum_probs=79.9
Q ss_pred CCCe-eEEEeeccceecccc--ccCCC------------------------c--ccchhHHHHHHHHHHCCCeEEEEecC
Q psy4654 375 PRTE-VVVFSVDGSFTASVS--VTGRD------------------------P--KVRAGAVDIVRHWQELGYLIIYITGR 425 (559)
Q Consensus 375 ~~~k-~VIfDIDGTlt~sd~--~~g~D------------------------~--~~~~GA~elv~~l~~~GY~IIYLTaR 425 (559)
...+ +|+|||||||.+|.. ..|.. . .+.++|.++++.++++|++|.|+|+|
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444 999999999999975 12221 1 23445999999999999999999999
Q ss_pred CchhhHHHHHHH-hhCCCCCc-eeEecCCC--CCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcE
Q psy4654 426 PDMQQGRVLSWL-SQHNFPHG-LVSFADGL--SPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSI 499 (559)
Q Consensus 426 p~~~~~~T~~WL-~qhglP~G-~L~lr~g~--~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~I 499 (559)
.....+.|.+-| +..|+|.- .+++.... .++|. |..+++++ ++ ...||| ..|+.+.+++|+..-.+
T Consensus 140 ~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~--~~~~l~~~----~i--~i~vGDs~~DI~aAk~AGi~~I~V 210 (237)
T TIGR01672 140 TPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYT--KTQWIQDK----NI--RIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred CCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCC--HHHHHHhC----CC--eEEEeCCHHHHHHHHHCCCCEEEE
Confidence 776455554444 45799752 33333221 23342 44455443 33 467999 69999999999997666
No 18
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.49 E-value=8.3e-08 Score=92.62 Aligned_cols=54 Identities=26% Similarity=0.437 Sum_probs=44.7
Q ss_pred CcccchhHHHHHHHHHHCCCeEEEEecCCch----hhHHHHHHHhhC--CCCCceeEecC
Q psy4654 398 DPKVRAGAVDIVRHWQELGYLIIYITGRPDM----QQGRVLSWLSQH--NFPHGLVSFAD 451 (559)
Q Consensus 398 D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~----~~~~T~~WL~qh--glP~G~L~lr~ 451 (559)
+.++.+||++++++|.+.||.++|||+|+.. ..+.|.+||++| ++|++.+++.+
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~ 130 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG 130 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec
Confidence 4458999999999999999999999999976 678999999999 77877787764
No 19
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.46 E-value=9.4e-07 Score=81.86 Aligned_cols=116 Identities=22% Similarity=0.323 Sum_probs=79.1
Q ss_pred eeEEEeeccceeccccc----cCCCcccchhHHHHHHHHHHCCCeEEEEecCCch------------hhHHHHHHHhhCC
Q psy4654 378 EVVVFSVDGSFTASVSV----TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDM------------QQGRVLSWLSQHN 441 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~----~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~------------~~~~T~~WL~qhg 441 (559)
++++||+||||+...+- ...+..+.+|+.++++.|+++||.+.++|..+.. ....+...|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 58999999999988751 3334567999999999999999999999997631 1256777888899
Q ss_pred CCCceeEec-----CC-CCCChhhHHHHHHHHHhhccCCcE--EEEeCC-ccchhHHHhcCCCC
Q psy4654 442 FPHGLVSFA-----DG-LSPGFLGHKASYLKSLIQDHGVVI--HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 442 lP~G~L~lr-----~g-~~~dp~~~K~~~L~~L~~~~~~~i--~aafGN-~~DV~aYr~vGI~~ 496 (559)
+++...+.. +. ...+| |.+.+..++...++.. ..-.|| ..|+.+-+++||..
T Consensus 81 l~~~~~~~~~~~~~~~~~~~KP---~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 81 VAVDGVLFCPHHPADNCSCRKP---KPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred CceeEEEECCCCCCCCCCCCCC---CHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 986544442 11 11233 2233333322223332 455778 68999999999964
No 20
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.33 E-value=4e-06 Score=79.94 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCeeEEEeeccceecccccc----C-CCcc-cchhHHHHHHHHHHCCCeEEEEecCCch---------hhHHHHHHHhhC
Q psy4654 376 RTEVVVFSVDGSFTASVSVT----G-RDPK-VRAGAVDIVRHWQELGYLIIYITGRPDM---------QQGRVLSWLSQH 440 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~----g-~D~~-~~~GA~elv~~l~~~GY~IIYLTaRp~~---------~~~~T~~WL~qh 440 (559)
..|+++||+||||.+..+.. - .||+ +.+|+.++++.|+++||.|.++|..+.. ....+...|+++
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~ 91 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL 91 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc
Confidence 35899999999999865421 1 2343 4799999999999999999999986653 224567889999
Q ss_pred CCCCceeEecCC-CCCC--hhhHHHHHHHHHhhc--cCCcEEEEeCC-c--------cchhHHHhcCCCC
Q psy4654 441 NFPHGLVSFADG-LSPG--FLGHKASYLKSLIQD--HGVVIHAAYGS-N--------KDVSVYTSVGLKP 496 (559)
Q Consensus 441 glP~G~L~lr~g-~~~d--p~~~K~~~L~~L~~~--~~~~i~aafGN-~--------~DV~aYr~vGI~~ 496 (559)
|++...++..+. ..++ |..++. +++.+ . +...=..-.|| . .|+.+-+++|++.
T Consensus 92 gl~~~~ii~~~~~~~~KP~p~~~~~-~~~~~--~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 92 KVPIQVLAATHAGLYRKPMTGMWEY-LQSQY--NSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCCEEEEEecCCCCCCCCccHHHHH-HHHHc--CCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 998755444432 2233 333332 22222 1 11111334456 3 4899999899875
No 21
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.26 E-value=6.4e-06 Score=78.43 Aligned_cols=116 Identities=13% Similarity=0.169 Sum_probs=75.3
Q ss_pred eeEEEeeccceecccccc--CCCcccchhHHHHHHHHHHCCCeEEEEecCCch----h--------hHHHHHHHhhCCCC
Q psy4654 378 EVVVFSVDGSFTASVSVT--GRDPKVRAGAVDIVRHWQELGYLIIYITGRPDM----Q--------QGRVLSWLSQHNFP 443 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~--g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~----~--------~~~T~~WL~qhglP 443 (559)
|++.+|.||||....... ..++.+.+|+.++++.|+++||++..+|.-+.. . .+.....|.+.+++
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD 81 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999543222 235667899999999999999999999987641 1 12222334567888
Q ss_pred CceeEecC------------C--CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCC
Q psy4654 444 HGLVSFAD------------G--LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 444 ~G~L~lr~------------g--~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.+.++... . ..++|..++.. ++.+ .....=...+|| ..|+.+-+++|+..
T Consensus 82 ~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a-~~~~--~~~~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 82 LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQA-RKEL--HIDMAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred ccEEEECCCCCcccccccCCCCCCCCCHHHHHHH-HHHc--CcChhhEEEEcCCHHHHHHHHHCCCcE
Confidence 77766531 1 13455444422 2222 111111345788 79999999999974
No 22
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.15 E-value=3.2e-05 Score=73.75 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=76.9
Q ss_pred CeeEEEeeccceeccccccCC---CcccchhHHHHHHHHHHCCCeEEEEecCCch--------h----hHHHHHHHhhCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGR---DPKVRAGAVDIVRHWQELGYLIIYITGRPDM--------Q----QGRVLSWLSQHN 441 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~---D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~--------~----~~~T~~WL~qhg 441 (559)
.|+++||.||||........+ ++.+.+|+.++++.|+++|+.+.++|..+.- + .+.....|++.+
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 82 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG 82 (181)
T ss_pred ccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 489999999999666533222 3567899999999999999999999987631 1 123344556678
Q ss_pred CCCceeEecC--------CCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 442 FPHGLVSFAD--------GLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 442 lP~G~L~lr~--------g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
+.++.++... ...++|+.+.. +++.+ .....=...+|| ..|+.+-+++|+.
T Consensus 83 ~~f~~i~~~~~~~~~~~~~~KP~p~~~~~-~~~~l--~~~~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 83 GRLDGIYYCPHHPEDGCDCRKPKPGMLLS-IAERL--NIDLAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred CccceEEECCCCCCCCCcCCCCCHHHHHH-HHHHc--CCChhhEEEEeCCHHHHHHHHHCCCe
Confidence 8777766542 12345544432 33333 112222445788 6899999999994
No 23
>PLN02954 phosphoserine phosphatase
Probab=98.11 E-value=1.5e-05 Score=77.71 Aligned_cols=93 Identities=17% Similarity=0.273 Sum_probs=62.0
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeE-----ecC-C----C-CCCh---hhHHHHHH
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVS-----FAD-G----L-SPGF---LGHKASYL 465 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~-----lr~-g----~-~~dp---~~~K~~~L 465 (559)
.+.+|+.++++.++++|+.+.++|+-... .+...|+.+|++...++ +.+ | . ..++ ..-|.+.+
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~---~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i 160 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQ---MIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAV 160 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHH---HHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHH
Confidence 35799999999999999999999997654 45556778888743232 111 1 0 0001 12376777
Q ss_pred HHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 466 KSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 466 ~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
+.+....+..-...+|| ..|+.+.++.|++
T Consensus 161 ~~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 161 QHIKKKHGYKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHHHcCCCceEEEeCCHHHHHhhhcCCCC
Confidence 77654434444667899 6999997776665
No 24
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.07 E-value=2e-05 Score=73.92 Aligned_cols=105 Identities=24% Similarity=0.240 Sum_probs=68.8
Q ss_pred CeeEEEeeccceeccccc---cCCC---cccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEec
Q psy4654 377 TEVVVFSVDGSFTASVSV---TGRD---PKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFA 450 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~---~g~D---~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr 450 (559)
.|+|+|||||||.+.... -++. +-..++ .++++|+++|+++.++|+++.. .+...|++.|++.- +-
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~---~~~~~l~~~gi~~~--~~- 72 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAK---LVEDRCKTLGITHL--YQ- 72 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCH---HHHHHHHHcCCCEE--Ee-
Confidence 378999999999974221 1111 112333 2799999999999999999875 44667888887631 22
Q ss_pred CCCCCChhhHHHHHHHHHhhccC--CcEEEEeCC-ccchhHHHhcCCC
Q psy4654 451 DGLSPGFLGHKASYLKSLIQDHG--VVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 451 ~g~~~dp~~~K~~~L~~L~~~~~--~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
+..++| +.+..+....+ ..=...+|| .+|+.+.+.+|++
T Consensus 73 -~~~~k~-----~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~ 114 (154)
T TIGR01670 73 -GQSNKL-----IAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS 114 (154)
T ss_pred -cccchH-----HHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 123333 33443332222 234677999 7999999999996
No 25
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.06 E-value=1.6e-05 Score=75.52 Aligned_cols=117 Identities=12% Similarity=0.210 Sum_probs=77.5
Q ss_pred eeEEEeeccceeccccc-----cCCCcccchhHHHHHHHHHHCCCeEEEEecCCc------------hhhHHHHHHHhhC
Q psy4654 378 EVVVFSVDGSFTASVSV-----TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPD------------MQQGRVLSWLSQH 440 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~-----~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~------------~~~~~T~~WL~qh 440 (559)
|++.||.||||...-+. .-.+.++.+|+.++++.|+++||.++++|.-+. .....+.+-|+++
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ 81 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence 78999999999985331 112346789999999999999999999997531 1233455567888
Q ss_pred CCCCceeEec-----CC-CCCChhhHHHHHHHHHhhccCCc--EEEEeCC-ccchhHHHhcCCCCC
Q psy4654 441 NFPHGLVSFA-----DG-LSPGFLGHKASYLKSLIQDHGVV--IHAAYGS-NKDVSVYTSVGLKPR 497 (559)
Q Consensus 441 glP~G~L~lr-----~g-~~~dp~~~K~~~L~~L~~~~~~~--i~aafGN-~~DV~aYr~vGI~~~ 497 (559)
|++++.++.+ +. ...+| |.+.+..+++..++. =...+|| ..|+.+-+++|+.+-
T Consensus 82 gl~fd~ii~~~~~~~~~~~~~KP---~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 82 GIIFDDVLICPHFPDDNCDCRKP---KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred CCceeEEEECCCCCCCCCCCCCC---CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 9987666553 21 23344 333333333322332 2455677 789999999999753
No 26
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=6.3e-05 Score=78.68 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=116.4
Q ss_pred EEeCCCccEEEecCCCCcCCCCccceEEEEcCCceeE-EEEEEeeCCCCeeEEEeeccceeccccc----------cCCC
Q psy4654 330 EVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDHTSV-DFYLAVVPPRTEVVVFSVDGSFTASVSV----------TGRD 398 (559)
Q Consensus 330 ~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~gd~t~~-~~~i~v~~~~~k~VIfDIDGTlt~sd~~----------~g~D 398 (559)
-.||+.|-.....-.++.+..|-+.|+.-++|-..-| .+-+-|+.+..=-+|+|||-|+-.+... .+.+
T Consensus 113 ~~Td~~Gyf~i~~~~~~~~~~g~~av~lq~eg~~~~Ae~~~~~v~~~a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~ 192 (373)
T COG4850 113 VATDDEGYFIIHAVIPFPPTKGNHAVRLQSEGEKIKAEAAPVPVLNRAGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHA 192 (373)
T ss_pred eEecCCCceEEEEecccCCCCCceeEEeecCCCCcchhcccceeecccceeeeeccccceEecccccchHHHHHHhhhcc
Confidence 3688889433333234446778889998899865444 3456667777778999999999777631 2222
Q ss_pred --cccchhHHHHHHHHHHCC-CeEEEEecCCchhhHHHHHHHhhCCCCCceeEecC------CCCCChhhHHHHHHHHHh
Q psy4654 399 --PKVRAGAVDIVRHWQELG-YLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFAD------GLSPGFLGHKASYLKSLI 469 (559)
Q Consensus 399 --~~~~~GA~elv~~l~~~G-Y~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~------g~~~dp~~~K~~~L~~L~ 469 (559)
-++.+|+-..|+.+.+.| -.+.|+|.-|...-....++|..++||+|+++++. ++..--...|...|+.++
T Consensus 193 ~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil 272 (373)
T COG4850 193 LTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNIL 272 (373)
T ss_pred cccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHH
Confidence 358999999999999998 79999999999999999999999999999999982 222212234666666544
Q ss_pred h-ccCCcEEEEeCC-ccchhHHHhc
Q psy4654 470 Q-DHGVVIHAAYGS-NKDVSVYTSV 492 (559)
Q Consensus 470 ~-~~~~~i~aafGN-~~DV~aYr~v 492 (559)
. --+..|...=|| ..|-..|.++
T Consensus 273 ~~~p~~kfvLVGDsGE~DpeIYae~ 297 (373)
T COG4850 273 RRYPDRKFVLVGDSGEHDPEIYAEM 297 (373)
T ss_pred HhCCCceEEEecCCCCcCHHHHHHH
Confidence 3 234455554455 7899999874
No 27
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.96 E-value=2.4e-05 Score=74.39 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=63.1
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--ceeEec-C-CC-CCChh-----hHHHHHHHHHhh
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--GLVSFA-D-GL-SPGFL-----GHKASYLKSLIQ 470 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G~L~lr-~-g~-~~dp~-----~~K~~~L~~L~~ 470 (559)
+.+|+.++++.++++|+.++++|+.... .++.++++.|+.. +..+.. + +. .+++. ..|.+.++.+..
T Consensus 81 ~~~g~~e~l~~l~~~g~~~~IvS~~~~~---~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 81 LRDYAEELVRWLKEKGLKTAIVSGGIMC---LAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 5789999999999999999999998644 4455566666542 111111 1 10 11110 135556665543
Q ss_pred ccCC--cEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCC
Q psy4654 471 DHGV--VIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 471 ~~~~--~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
..++ .=...+|| ..|+.+...+|++ |.+|+.+
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~----~a~~~~~ 192 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADIS----ISLGDEG 192 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCe----EEECCCc
Confidence 3333 22566788 6999999999994 5777754
No 28
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.96 E-value=5.3e-05 Score=73.47 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=61.1
Q ss_pred cccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccC
Q psy4654 399 PKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHG 473 (559)
Q Consensus 399 ~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~ 473 (559)
..+.+|+.++++.++++|+.+.++|+.... ..+.+|+++++. +..++..+. ..++|+.++. +++.+ ...
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~-~~~~~--~~~ 165 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTP---FVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLL-ACEKL--GLD 165 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHH-HHHHc--CCC
Confidence 457899999999999999999999988653 445788888774 233333322 1234433222 33333 122
Q ss_pred CcEEEEeCC-ccchhHHHhcCCCC
Q psy4654 474 VVIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 474 ~~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
..=...+|| ..|+.+-+++|++.
T Consensus 166 ~~~~i~igD~~~Di~~a~~~g~~~ 189 (226)
T PRK13222 166 PEEMLFVGDSRNDIQAARAAGCPS 189 (226)
T ss_pred hhheEEECCCHHHHHHHHHCCCcE
Confidence 233567999 69999999999965
No 29
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.96 E-value=3.1e-05 Score=75.31 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=76.9
Q ss_pred CCCeeEEEeeccceecccc------------------------------------------------ccCCCcccchhHH
Q psy4654 375 PRTEVVVFSVDGSFTASVS------------------------------------------------VTGRDPKVRAGAV 406 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~------------------------------------------------~~g~D~~~~~GA~ 406 (559)
...++|+||+||||+++++ ......++.+|+.
T Consensus 12 ~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 91 (219)
T TIGR00338 12 RSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTEGAE 91 (219)
T ss_pred ccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCCCHH
Confidence 4468999999999999762 0112334789999
Q ss_pred HHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCce---eEecCC-----CCCCh--hhHHHHHHHHHhhccCC--
Q psy4654 407 DIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGL---VSFADG-----LSPGF--LGHKASYLKSLIQDHGV-- 474 (559)
Q Consensus 407 elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~---L~lr~g-----~~~dp--~~~K~~~L~~L~~~~~~-- 474 (559)
++++.++++|+++.++|+-. ......++++.+++.-. +..-++ ...++ ...|...++.++...++
T Consensus 92 ~~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 168 (219)
T TIGR00338 92 ELVKTLKEKGYKVAVISGGF---DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISP 168 (219)
T ss_pred HHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCCH
Confidence 99999999999999999854 44555666666765311 111011 00000 01144444443332222
Q ss_pred cEEEEeCC-ccchhHHHhcCCCCCcEEEEcCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
.=...+|| .+|+.+.+++|++ +.+|+.
T Consensus 169 ~~~i~iGDs~~Di~aa~~ag~~----i~~~~~ 196 (219)
T TIGR00338 169 ENTVAVGDGANDLSMIKAAGLG----IAFNAK 196 (219)
T ss_pred HHEEEEECCHHHHHHHHhCCCe----EEeCCC
Confidence 12344788 7999999999997 355654
No 30
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.95 E-value=5e-05 Score=66.88 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=66.8
Q ss_pred EEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCc--eeEecCCCCCCh
Q psy4654 380 VVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHG--LVSFADGLSPGF 457 (559)
Q Consensus 380 VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G--~L~lr~g~~~dp 457 (559)
|+||+||||... . .+.|||++.++.++++|..++++|-.+...++...+-|++.||+.. .++...
T Consensus 1 ~l~D~dGvl~~g-----~--~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~------ 67 (101)
T PF13344_consen 1 FLFDLDGVLYNG-----N--EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG------ 67 (101)
T ss_dssp EEEESTTTSEET-----T--EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH------
T ss_pred CEEeCccEeEeC-----C--CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH------
Confidence 689999999863 2 4689999999999999999999999999998888899999888743 355442
Q ss_pred hhHHHHHHHHHhhccCCcEEEEeCCccchhHHHhcCC
Q psy4654 458 LGHKASYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGL 494 (559)
Q Consensus 458 ~~~K~~~L~~L~~~~~~~i~aafGN~~DV~aYr~vGI 494 (559)
..=..+|++. .+..-+...|........++.|+
T Consensus 68 -~~~~~~l~~~---~~~~~v~vlG~~~l~~~l~~~G~ 100 (101)
T PF13344_consen 68 -MAAAEYLKEH---KGGKKVYVLGSDGLREELREAGF 100 (101)
T ss_dssp -HHHHHHHHHH---TTSSEEEEES-HHHHHHHHHTTE
T ss_pred -HHHHHHHHhc---CCCCEEEEEcCHHHHHHHHHcCC
Confidence 1222333332 23344555677666666666665
No 31
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.92 E-value=4.3e-05 Score=77.25 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=57.9
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC---CCCCceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH---NFPHGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh---glP~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+.+||.++++.|+++|+.+.++|+.+... +...|+.. ++..+.++..+. ..++|+.+. .+++.+ ++
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I~T~~~~~~---~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~-~a~~~l----~~ 173 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGSTTGYTREM---MDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMAL-KNAIEL----GV 173 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCcHHH---HHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHH-HHHHHc----CC
Confidence 57899999999999999999999877644 34445543 333345555432 234554433 223333 33
Q ss_pred -c--EEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 -V--IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 -~--i~aafGN-~~DV~aYr~vGI~~ 496 (559)
+ =...+|| ..|+.+-+++|+..
T Consensus 174 ~~~~e~l~IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 174 YDVAACVKVDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred CCCcceEEEcCcHHHHHHHHHCCCEE
Confidence 1 2466788 79999999999964
No 32
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.92 E-value=3.5e-05 Score=74.26 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=70.3
Q ss_pred CCeeEEEeeccceeccccccCC-CcccchhH---HHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGR-DPKVRAGA---VDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFAD 451 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~-D~~~~~GA---~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~ 451 (559)
+.+.|+|||||||++.....+. +.....-. ...++.++++|+.+.++|+|+. ..++..+++.|++. + +.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~---~~v~~~l~~lgl~~--~-f~- 92 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKS---KLVEDRMTTLGITH--L-YQ- 92 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCc---HHHHHHHHHcCCce--e-ec-
Confidence 4799999999999987311111 00011111 1467778889999999999965 44556777777653 2 22
Q ss_pred CCCCChhhHHHHHHHHHhhccCC--cEEEEeCC-ccchhHHHhcCCC
Q psy4654 452 GLSPGFLGHKASYLKSLIQDHGV--VIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 452 g~~~dp~~~K~~~L~~L~~~~~~--~i~aafGN-~~DV~aYr~vGI~ 495 (559)
+.. .|.+.++.++...++ .=.+.+|| ..|+.+.+.+|++
T Consensus 93 g~~-----~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 93 GQS-----NKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred CCC-----cHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 222 255666665543343 34677899 7999999999986
No 33
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.90 E-value=3.9e-05 Score=75.97 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=59.9
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--ceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--GLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
++.+|+.++++.++++|+.+.++|+.+. ..+...|++.++.. +.++..+. ..++|+.+.. +++.+ ...-
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~-~~~~l--~~~p 168 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPE---YLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLV-AAERI--GVAP 168 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHH-HHHHh--CCCh
Confidence 4688999999999999999999999876 34455677777642 33333321 2345544332 33333 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.=...+|| ..|+.+-+++|+.+
T Consensus 169 ~~~l~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 169 TDCVYVGDDERDILAARAAGMPS 191 (229)
T ss_pred hhEEEeCCCHHHHHHHHHCCCcE
Confidence 22577899 69999999999965
No 34
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.88 E-value=8.3e-05 Score=72.32 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC----CceeEecCC---CCCChhhHHHHHHHHHhhcc
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP----HGLVSFADG---LSPGFLGHKASYLKSLIQDH 472 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP----~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~ 472 (559)
.+.+|+.++++.++++|+.+.++|+.+....+ ..|++.++. ++.++..+. ..++|+.+.. .++.+ .+
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~---~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~-a~~~~--~~ 160 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAE---RLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILR-AMELT--GV 160 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHH---HHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHH-HHHHc--CC
Confidence 47789999999999999999999988765443 345555654 444555433 2355555442 23333 12
Q ss_pred C-CcEEEEeCC-ccchhHHHhcCCCC
Q psy4654 473 G-VVIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 473 ~-~~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
. ..=...+|| ..|+.+-+++|++.
T Consensus 161 ~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 161 QDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred CChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 1 123566778 79999999999995
No 35
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.88 E-value=5.1e-05 Score=73.76 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=58.9
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
+.+|+.++++.++++|+.+.++|+.+. ..+...|++.|+. ++.++-.+. ..++|+.++. +++.+ .....
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~---~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~-~~~~~--~~~~~ 156 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMR---DTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLK-ALELL--GAKPE 156 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHH-HHHHc--CCCHH
Confidence 578999999999999999999999874 3444556666764 233443332 1344544442 22333 11111
Q ss_pred EEEEeCC-ccchhHHHhcCCCC
Q psy4654 476 IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 476 i~aafGN-~~DV~aYr~vGI~~ 496 (559)
=...+|| ..|+.+-+++|++.
T Consensus 157 ~~~~iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 157 EALMVGDNHHDILAGKNAGTKT 178 (214)
T ss_pred HEEEECCCHHHHHHHHHCCCeE
Confidence 2456899 69999999999964
No 36
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.81 E-value=0.00014 Score=72.71 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=58.5
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC---CCceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF---PHGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl---P~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+.+||.++++.++++|+.+..+|+.+.... +..|++.|+ ..+.++..+. ..++|+.+. .+++.+ ++
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~---~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~-~a~~~l----~~ 171 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGSTTGYTREMM---DVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMAL-KNAIEL----GV 171 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEEECCCcHHHH---HHHHHHHHhcCCCCceEEccccCCCCCCCHHHHH-HHHHHc----CC
Confidence 568999999999999999999999875544 344554443 2244554432 235554443 233333 33
Q ss_pred c-E--EEEeCC-ccchhHHHhcCCCC
Q psy4654 475 V-I--HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~-i--~aafGN-~~DV~aYr~vGI~~ 496 (559)
. . ...+|| ..|+.+-+++|+.+
T Consensus 172 ~~~~~~l~IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 172 YDVAACVKVGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred CCchheEEECCcHHHHHHHHHCCCeE
Confidence 1 2 466788 69999999999965
No 37
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.78 E-value=6.5e-05 Score=73.43 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=45.2
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
.|+|++|+||||.+++. .+.+.+.+.+++++++|+.++++|||+..... ..+.+.+++
T Consensus 3 ~kli~~DlDGTLl~~~~------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~---~~~~~l~~~ 60 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR------RLSLKAVEAIRKAEKLGIPVILATGNVLCFAR---AAAKLIGTS 60 (230)
T ss_pred eeEEEEecCCCcCCCCC------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHH---HHHHHhCCC
Confidence 38999999999997643 24566889999999999999999999976433 344555554
No 38
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.78 E-value=0.00011 Score=73.71 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=60.5
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
+.+|+.+++..|+++|+++.++|+.+.. .++..|++.++. ++.++..+. ..++|+.+.. +++.+ .+...
T Consensus 109 l~pgv~e~L~~L~~~g~~l~I~Tn~~~~---~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~-a~~~~--~~~~~ 182 (248)
T PLN02770 109 PLNGLYKLKKWIEDRGLKRAAVTNAPRE---NAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLK-ALEVL--KVSKD 182 (248)
T ss_pred cCccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHH-HHHHh--CCChh
Confidence 4679999999999999999999997654 445566777764 455555542 2445544332 23333 12212
Q ss_pred EEEEeCC-ccchhHHHhcCCCC
Q psy4654 476 IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 476 i~aafGN-~~DV~aYr~vGI~~ 496 (559)
=...+|| ..|+.+-+++|++.
T Consensus 183 ~~l~vgDs~~Di~aA~~aGi~~ 204 (248)
T PLN02770 183 HTFVFEDSVSGIKAGVAAGMPV 204 (248)
T ss_pred HEEEEcCCHHHHHHHHHCCCEE
Confidence 2455899 69999999999975
No 39
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.78 E-value=8.2e-05 Score=71.61 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=61.5
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.+.+||.++++.++++|+.+.++|+.+. ..++.+|++.|+. ++.++..+. ..++|+.+. .+++.+ ....
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~-~~~~~~--~~~~ 158 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPT---PLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLL-LAAERL--GVAP 158 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHH-HHHHHc--CCCh
Confidence 4679999999999999999999999654 4566788887774 333443332 134454443 222333 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKPR 497 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~~ 497 (559)
.=...+|| ..|+.+-+++|++.-
T Consensus 159 ~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 159 QQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred hHeEEeCCCHHHHHHHHHCCCeEE
Confidence 22557999 799999999999753
No 40
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.76 E-value=8.9e-05 Score=72.56 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=59.8
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.+.+|+.++++.|+++||++..+|+.+. ..++..|++.++. ++.++.++. ..++|+.+.. +++.+ ....
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~-~~~~~--~~~~ 165 (222)
T PRK10826 92 PLLPGVREALALCKAQGLKIGLASASPL---HMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLN-CAAKL--GVDP 165 (222)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCcH---HHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHH-HHHHc--CCCH
Confidence 4678999999999999999999999554 4555667776663 344444432 2345544322 22322 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.=...+|| ..|+.+.+++|++.
T Consensus 166 ~~~~~igDs~~Di~aA~~aG~~~ 188 (222)
T PRK10826 166 LTCVALEDSFNGMIAAKAARMRS 188 (222)
T ss_pred HHeEEEcCChhhHHHHHHcCCEE
Confidence 22467888 79999999999964
No 41
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.76 E-value=7.7e-05 Score=71.99 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC-CCCChhhHHHHHHHHHhhccCCcE-
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG-LSPGFLGHKASYLKSLIQDHGVVI- 476 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g-~~~dp~~~K~~~L~~L~~~~~~~i- 476 (559)
+.+||.++++.|+++|+.+.++|+.+... ++.-|++.|+. ++.++..+. ...+| |.+++..+++..++..
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~---~~~~l~~~~l~~~f~~i~~~~~~~~~KP---~~~~~~~~~~~~~~~~~ 149 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKSGPR---ARSLLEALGLLPLFDHVIGSDEVPRPKP---APDIVREALRLLDVPPE 149 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHHHcCChhheeeEEecCcCCCCCC---ChHHHHHHHHHcCCChh
Confidence 57899999999999999999999976544 34456666663 344444432 12333 2223333222223322
Q ss_pred -EEEeCC-ccchhHHHhcCCCCC
Q psy4654 477 -HAAYGS-NKDVSVYTSVGLKPR 497 (559)
Q Consensus 477 -~aafGN-~~DV~aYr~vGI~~~ 497 (559)
...+|| ..|+.+-+++|++.-
T Consensus 150 ~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 150 DAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred heEEEcCCHHHHHHHHHcCCeEE
Confidence 567888 689999999999853
No 42
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.74 E-value=0.00032 Score=71.60 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=61.6
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
+.+|+.+++..|+++||.+.++|+.+. ..++.-|++.|+. ++.++..+. ..++|+.+.. +++.+ .....
T Consensus 110 l~pg~~e~L~~L~~~g~~l~I~Tn~~~---~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~-a~~~l--~~~p~ 183 (260)
T PLN03243 110 LRPGSREFVQALKKHEIPIAVASTRPR---RYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMY-AAERL--GFIPE 183 (260)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCcCH---HHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHH-HHHHh--CCChH
Confidence 579999999999999999999999875 3444556666763 455555543 2456655543 33333 11111
Q ss_pred EEEEeCC-ccchhHHHhcCCCC
Q psy4654 476 IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 476 i~aafGN-~~DV~aYr~vGI~~ 496 (559)
=...+|| ..|+.+-+++|+..
T Consensus 184 ~~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 184 RCIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred HeEEEcCCHHHHHHHHHcCCEE
Confidence 2456899 69999999999974
No 43
>PLN02645 phosphoglycolate phosphatase
Probab=97.72 E-value=0.00019 Score=74.82 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=72.7
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCc--eeEecCCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHG--LVSFADGL 453 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G--~L~lr~g~ 453 (559)
..++|+|||||||-..+ .+.+|+.+.++.++++|++++++|+|+....+...+=|++.||+.. .++...
T Consensus 27 ~~~~~~~D~DGtl~~~~-------~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~-- 97 (311)
T PLN02645 27 SVETFIFDCDGVIWKGD-------KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSS-- 97 (311)
T ss_pred hCCEEEEeCcCCeEeCC-------ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehH--
Confidence 46899999999998753 2568999999999999999999999998887777777888887532 233332
Q ss_pred CCChhhHHHHHHHHHhhccCCcEEEEeCCccchhHHHhcCCCC
Q psy4654 454 SPGFLGHKASYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGLKP 496 (559)
Q Consensus 454 ~~dp~~~K~~~L~~L~~~~~~~i~aafGN~~DV~aYr~vGI~~ 496 (559)
.-...+|+..-...+ .-+...|+..++.+.+..|+..
T Consensus 98 -----~~~~~~l~~~~~~~~-~~V~viG~~~~~~~l~~~Gi~~ 134 (311)
T PLN02645 98 -----FAAAAYLKSINFPKD-KKVYVIGEEGILEELELAGFQY 134 (311)
T ss_pred -----HHHHHHHHhhccCCC-CEEEEEcCHHHHHHHHHCCCEE
Confidence 123334443210001 1244456666777778888753
No 44
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.72 E-value=0.00012 Score=68.74 Aligned_cols=88 Identities=11% Similarity=0.036 Sum_probs=56.1
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.+.+||.++++.++++|+.|..+|+. ...+..|++.++. .+.++-.+. ..++|+.+. .+++.+ ....
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~-~~~~~~--~~~~ 159 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFL-LAAELL--GVSP 159 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHH-HHHHHc--CCCH
Confidence 46889999999999999999999987 3356677777764 344443321 234444333 233333 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.=....|| ..|+.+-+++|++
T Consensus 160 ~~~v~IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 160 NECVVFEDALAGVQAARAAGMF 181 (185)
T ss_pred HHeEEEeCcHhhHHHHHHCCCe
Confidence 11234678 6899999999985
No 45
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.72 E-value=6.6e-05 Score=76.19 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=53.1
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
|+|+||+||||...+... ..+.+|+.+.+++++++|+.++++|+|+....+...+-|++.|++
T Consensus 2 k~i~~D~DGtl~~~~~~~---~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS---GVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CEEEEeCCCeEEeCCCcc---cCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 789999999998775311 125789999999999999999999999998887888888888775
No 46
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.72 E-value=0.00025 Score=68.06 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=59.7
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--c-eeEecC-C-----CCCChhhHHHHHHHHHhhc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--G-LVSFAD-G-----LSPGFLGHKASYLKSLIQD 471 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G-~L~lr~-g-----~~~dp~~~K~~~L~~L~~~ 471 (559)
+.+|+.++++.++++ +.+.++|+.... .++.+|++.|++. . .+...+ + ....| .-|..+++.+..
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~---~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p-~~k~~~l~~~~~- 142 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYE---FAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQP-DGKRQAVKALKS- 142 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHH---HHHHHHHHcCCchhhcceEEECCCCeEECcccccc-chHHHHHHHHHH-
Confidence 479999999999999 999999887664 4456788888762 1 121111 1 11233 347777776632
Q ss_pred cCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 472 HGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 472 ~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
...-...+|| ..|+.+.+++|+.
T Consensus 143 -~~~~~v~iGDs~~D~~~~~aa~~~ 166 (205)
T PRK13582 143 -LGYRVIAAGDSYNDTTMLGEADAG 166 (205)
T ss_pred -hCCeEEEEeCCHHHHHHHHhCCCC
Confidence 2234678899 6999999999974
No 47
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.71 E-value=0.00017 Score=69.16 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=65.1
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
++.+|+.++++.++++||.+..+|.-+. ...+..|++.|+ .++.++..+. ..++|+.|+..+ +.+ ....
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~---~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~-~~~--~~~p 165 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSP---AMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLAL-EAL--GVPP 165 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHH-HHh--CCCh
Confidence 3578999999999999999999998664 344556677777 4566666542 234554444332 333 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
.=...+|| ..|+.+-+++|+.. .-|++.+
T Consensus 166 ~~~~~vgD~~~Di~~A~~~G~~~---i~v~r~~ 195 (198)
T TIGR01428 166 DEVLFVASNPWDLGGAKKFGFKT---AWVNRPG 195 (198)
T ss_pred hhEEEEeCCHHHHHHHHHCCCcE---EEecCCC
Confidence 22356788 68999999999975 3556654
No 48
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.70 E-value=6.6e-05 Score=73.23 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=41.7
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHH
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRV 433 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T 433 (559)
|+|+|||||||.+++. .+.+.+.+.+++++++|+.++++|||+.......
T Consensus 2 k~v~~DlDGTLl~~~~------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~ 51 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARAL 51 (215)
T ss_pred cEEEEecCCCcCCCCc------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHH
Confidence 7899999999997542 3677889999999999999999999987654333
No 49
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.70 E-value=0.00013 Score=71.63 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=62.1
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeE-----ecCC----CCCChh---------hHH
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVS-----FADG----LSPGFL---------GHK 461 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~-----lr~g----~~~dp~---------~~K 461 (559)
.+.+|+.++++.++++|+.+.++|+-.. ..+..+|++. ++...++ +.++ ..++|. ..|
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~---~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K 149 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMD---FFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCK 149 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcH---HHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCch
Confidence 4689999999999999999999999864 4556677776 6654443 2211 112232 137
Q ss_pred HHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 462 ASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 462 ~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
..+++.+.. ...-...+|| ..|+.+-+++|+
T Consensus 150 ~~~l~~~~~--~~~~~i~iGDs~~Di~aa~~Ag~ 181 (219)
T PRK09552 150 PSLIRKLSD--TNDFHIVIGDSITDLEAAKQADK 181 (219)
T ss_pred HHHHHHhcc--CCCCEEEEeCCHHHHHHHHHCCc
Confidence 888887732 2223567799 699999999998
No 50
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.68 E-value=0.00041 Score=70.96 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
+.+|+.++++.++++|+.+..+|+.+.. ..+..|++.++. ++.++..+. ..++|+.++. +++.+ .....
T Consensus 102 ~~~g~~e~L~~Lk~~g~~l~ivTn~~~~---~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~-~~~~~--g~~~~ 175 (272)
T PRK13223 102 VYPGVRDTLKWLKKQGVEMALITNKPER---FVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLF-VMKMA--GVPPS 175 (272)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCcHH---HHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHH-HHHHh--CCChh
Confidence 5799999999999999999999997653 344555666663 233444332 1233332322 22222 12222
Q ss_pred EEEEeCC-ccchhHHHhcCCCCCc
Q psy4654 476 IHAAYGS-NKDVSVYTSVGLKPRS 498 (559)
Q Consensus 476 i~aafGN-~~DV~aYr~vGI~~~~ 498 (559)
=...+|| ..|+.+-+++|+..--
T Consensus 176 ~~l~IGD~~~Di~aA~~aGi~~i~ 199 (272)
T PRK13223 176 QSLFVGDSRSDVLAAKAAGVQCVA 199 (272)
T ss_pred HEEEECCCHHHHHHHHHCCCeEEE
Confidence 3567899 7999999999998533
No 51
>PRK08238 hypothetical protein; Validated
Probab=97.65 E-value=0.00035 Score=77.42 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=83.6
Q ss_pred CCeeEEEeeccceecccc------------------------------------ccCCCc---ccchhHHHHHHHHHHCC
Q psy4654 376 RTEVVVFSVDGSFTASVS------------------------------------VTGRDP---KVRAGAVDIVRHWQELG 416 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~------------------------------------~~g~D~---~~~~GA~elv~~l~~~G 416 (559)
.+...|||+||||+++|. ..+-|+ +.++|+.++++.++++|
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G 88 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAG 88 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCC
Confidence 446899999999999983 133343 36799999999999999
Q ss_pred CeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCC-CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 417 YLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADG-LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 417 Y~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g-~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
+.+..+||.+....+.. +++.|+ ++.++-.++ ....|+ -|.+.+++.....+. +-+|| ..|+.+++.+|
T Consensus 89 ~~v~LaTas~~~~a~~i---~~~lGl-Fd~Vigsd~~~~~kg~-~K~~~l~~~l~~~~~---~yvGDS~~Dlp~~~~A~- 159 (479)
T PRK08238 89 RKLVLATASDERLAQAV---AAHLGL-FDGVFASDGTTNLKGA-AKAAALVEAFGERGF---DYAGNSAADLPVWAAAR- 159 (479)
T ss_pred CEEEEEeCCCHHHHHHH---HHHcCC-CCEEEeCCCccccCCc-hHHHHHHHHhCccCe---eEecCCHHHHHHHHhCC-
Confidence 99999999988665543 445566 556665543 222232 366667665432222 33589 69999999999
Q ss_pred CCCcEEEEcCCC
Q psy4654 495 KPRSIYIVGKVS 506 (559)
Q Consensus 495 ~~~~If~i~~~~ 506 (559)
+-+.||+..
T Consensus 160 ---~av~Vn~~~ 168 (479)
T PRK08238 160 ---RAIVVGASP 168 (479)
T ss_pred ---CeEEECCCH
Confidence 557889874
No 52
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.65 E-value=0.0002 Score=66.79 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=58.7
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--c-eeEec-CC-----CCC--Ch-hhHHHHHHHH
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--G-LVSFA-DG-----LSP--GF-LGHKASYLKS 467 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G-~L~lr-~g-----~~~--dp-~~~K~~~L~~ 467 (559)
++.+|+.++++.++++|+.++++|+... ..++.+++++|++. + .+... +| ... .+ ...|...++.
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFD---FFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcH---HHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 3678999999999999999999999754 56677888877752 1 11111 11 011 11 1468888888
Q ss_pred HhhccCC--cEEEEeCC-ccchhHHHh
Q psy4654 468 LIQDHGV--VIHAAYGS-NKDVSVYTS 491 (559)
Q Consensus 468 L~~~~~~--~i~aafGN-~~DV~aYr~ 491 (559)
++...++ .-...||| .+|+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~iGDs~~D~~~~~~ 176 (177)
T TIGR01488 150 LLEESKITLKKIIAVGDSVNDLPMLKL 176 (177)
T ss_pred HHHHhCCCHHHEEEEeCCHHHHHHHhc
Confidence 7553333 33677888 688877654
No 53
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.63 E-value=0.0002 Score=67.30 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=57.0
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.+.+||.++++.++++|+.+..+|+... ....|++.++. ++.++..+. -.++|+.++.. ++.+ ++
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~-----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~-~~~~----~~ 156 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN-----APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAA-AEGL----GV 156 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc-----HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHH-HHHc----CC
Confidence 3578999999999999999999998643 13467777764 444444321 24555554432 2222 22
Q ss_pred c--EEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 V--IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~--i~aafGN-~~DV~aYr~vGI~~ 496 (559)
. =...+|| ..|+.+-+++|+..
T Consensus 157 ~~~~~v~vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 157 SPSECIGIEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred CHHHeEEEecCHHHHHHHHHcCCEE
Confidence 2 1445778 68999999999853
No 54
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.63 E-value=0.00021 Score=70.91 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=57.3
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.+.+|+.++++.|+++||.+..+|+-+... .+.-|+..|+- ++.++..+. ..++|+.|...+ +.+ ++
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~---~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~-~~~----~~ 164 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHN---LAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVA-EHT----GL 164 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHH---HHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHH-HHc----CC
Confidence 357899999999999999999999854332 33335555552 344554432 234554444332 222 22
Q ss_pred cE--EEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VI--HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i--~aafGN-~~DV~aYr~vGI~~ 496 (559)
.. ...+|| ..|+.+-+++|+..
T Consensus 165 ~p~~~l~igDs~~di~aA~~aG~~~ 189 (224)
T PRK14988 165 KAERTLFIDDSEPILDAAAQFGIRY 189 (224)
T ss_pred ChHHEEEEcCCHHHHHHHHHcCCeE
Confidence 21 456888 68999999999975
No 55
>PRK11587 putative phosphatase; Provisional
Probab=97.62 E-value=0.00027 Score=69.24 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=57.5
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC-ceeEecCC---CCCChhhHHHHHHHHHhhccCCcE
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH-GLVSFADG---LSPGFLGHKASYLKSLIQDHGVVI 476 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~-G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~i 476 (559)
+.+|+.++++.|+++|+.+.++|..+... +..-|+..++.. ..++..+. ..++|+.+.. +++.+ ...-.=
T Consensus 84 ~~pg~~e~L~~L~~~g~~~~ivTn~~~~~---~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~-~~~~~--g~~p~~ 157 (218)
T PRK11587 84 ALPGAIALLNHLNKLGIPWAIVTSGSVPV---ASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLL-GAQLL--GLAPQE 157 (218)
T ss_pred eCcCHHHHHHHHHHcCCcEEEEcCCCchH---HHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHH-HHHHc--CCCccc
Confidence 57899999999999999999999976543 344455566643 33333321 2345544332 22233 112222
Q ss_pred EEEeCC-ccchhHHHhcCCCC
Q psy4654 477 HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 477 ~aafGN-~~DV~aYr~vGI~~ 496 (559)
...+|| ..|+.+-+++|+.+
T Consensus 158 ~l~igDs~~di~aA~~aG~~~ 178 (218)
T PRK11587 158 CVVVEDAPAGVLSGLAAGCHV 178 (218)
T ss_pred EEEEecchhhhHHHHHCCCEE
Confidence 566888 78999999999964
No 56
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.62 E-value=0.00019 Score=65.86 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=51.0
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHH-HhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCCc-EEE
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSW-LSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGVV-IHA 478 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~W-L~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~-i~a 478 (559)
..+|+.+++..|+++|+++..+|+++....+...+. |.. .+..++..+....+| +.+.+..++...++. =..
T Consensus 65 ~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l~~---~f~~i~~~~~~~~Kp---~~~~~~~~~~~~~~~~~~l 138 (154)
T TIGR01549 65 YIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHLGD---YFDLILGSDEFGAKP---EPEIFLAALESLGLPPEVL 138 (154)
T ss_pred eccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHHHHh---cCcEEEecCCCCCCc---CHHHHHHHHHHcCCCCCEE
Confidence 458999999999999999999999987665554433 222 234455554332333 122222222211221 235
Q ss_pred EeCC-ccchhHHHhcC
Q psy4654 479 AYGS-NKDVSVYTSVG 493 (559)
Q Consensus 479 afGN-~~DV~aYr~vG 493 (559)
.+|| ..|+.+-+++|
T Consensus 139 ~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 139 HVGDNLNDIEGARNAG 154 (154)
T ss_pred EEeCCHHHHHHHHHcc
Confidence 5677 57777777665
No 57
>PRK10976 putative hydrolase; Provisional
Probab=97.61 E-value=0.00016 Score=72.63 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=44.9
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
.|+|++||||||.+++.. +.+...+.+++++++|+++++.|||+..... ..+++-+++
T Consensus 2 ikli~~DlDGTLl~~~~~------is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~---~~~~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHT------LSPYAKETLKLLTARGIHFVFATGRHHVDVG---QIRDNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCCCc------CCHHHHHHHHHHHHCCCEEEEEcCCChHHHH---HHHHhcCCC
Confidence 389999999999987532 4556899999999999999999999986443 334444554
No 58
>PRK10444 UMP phosphatase; Provisional
Probab=97.61 E-value=0.00011 Score=74.40 Aligned_cols=65 Identities=14% Similarity=0.284 Sum_probs=55.7
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeEe
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVSF 449 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~l 449 (559)
+.|+||+||||..++ .+.+|+++.++.++++|..++++|+|+....+...+=|++.|+ +.+.++.
T Consensus 2 ~~v~~DlDGtL~~~~-------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~t 68 (248)
T PRK10444 2 KNVICDIDGVLMHDN-------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYT 68 (248)
T ss_pred cEEEEeCCCceEeCC-------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEec
Confidence 689999999998764 3688999999999999999999999999888888888888887 4555554
No 59
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.60 E-value=0.00026 Score=72.75 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=57.7
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--ceeEecCCCCCChhhHHHHHHHHHhhccCCc--E
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--GLVSFADGLSPGFLGHKASYLKSLIQDHGVV--I 476 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~--i 476 (559)
+.+||.++++.|+++|+.+.++|+... +.+...|+++|+.. +.+...+...++| +.+..++...++. =
T Consensus 143 l~pg~~e~L~~L~~~gi~laIvSn~~~---~~~~~~L~~~gl~~~F~~vi~~~~~~~k~-----~~~~~~l~~~~~~p~~ 214 (273)
T PRK13225 143 LFPGVADLLAQLRSRSLCLGILSSNSR---QNIEAFLQRQGLRSLFSVVQAGTPILSKR-----RALSQLVAREGWQPAA 214 (273)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHcCChhheEEEEecCCCCCCH-----HHHHHHHHHhCcChhH
Confidence 578999999999999999999998754 55566778787742 2232222122223 3333332222221 2
Q ss_pred EEEeCC-ccchhHHHhcCCCC
Q psy4654 477 HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 477 ~aafGN-~~DV~aYr~vGI~~ 496 (559)
...+|| ..|+.+-+++|+..
T Consensus 215 ~l~IGDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 215 VMYVGDETRDVEAARQVGLIA 235 (273)
T ss_pred EEEECCCHHHHHHHHHCCCeE
Confidence 467888 79999999999965
No 60
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.59 E-value=0.00011 Score=70.84 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=41.9
Q ss_pred EEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHH
Q psy4654 380 VVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWL 437 (559)
Q Consensus 380 VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL 437 (559)
|+|||||||..++.. +.+...+.++.|+++|+.+++.|||+..........|
T Consensus 1 i~~DlDGTLl~~~~~------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 52 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKEL 52 (254)
T ss_dssp EEEECCTTTCSTTSS------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT
T ss_pred cEEEECCceecCCCe------eCHHHHHHHHhhcccceEEEEEccCcccccccccccc
Confidence 789999999886432 5577899999999999999999999987654444433
No 61
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.58 E-value=0.00019 Score=72.12 Aligned_cols=57 Identities=14% Similarity=0.296 Sum_probs=45.0
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF 442 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl 442 (559)
.|+|++||||||.+++. .+.+...+.+++++++|+.|++.|||+.... +..+++.++
T Consensus 3 ~kli~~DlDGTLl~~~~------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~---~~~~~~l~~ 59 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH------TISPAVKQAIAAARAKGVNVVLTTGRPYAGV---HRYLKELHM 59 (270)
T ss_pred eEEEEEecCCcCcCCCC------ccCHHHHHHHHHHHHCCCEEEEecCCChHHH---HHHHHHhCC
Confidence 48999999999997653 2455678999999999999999999998743 334455555
No 62
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.57 E-value=0.00048 Score=65.68 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=73.5
Q ss_pred CCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCC
Q psy4654 374 PPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGL 453 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~ 453 (559)
..+.++|++|+||||+..+. ..+.+|+.++++.++++|+.+..+|..+. ...+..++++.++.. .....
T Consensus 22 ~~~v~~vv~D~Dgtl~~~~~-----~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~~~~~~~gl~~----~~~~~ 90 (170)
T TIGR01668 22 KVGIKGVVLDKDNTLVYPDH-----NEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAKAVEKALGIPV----LPHAV 90 (170)
T ss_pred HCCCCEEEEecCCccccCCC-----CCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHHHHHHHcCCEE----EcCCC
Confidence 35779999999999997642 24789999999999999999999999873 234555666666542 11222
Q ss_pred CCChhhHHHHHHHHHhhccCCcEEEEeCC-c-cchhHHHhcCCCC
Q psy4654 454 SPGFLGHKASYLKSLIQDHGVVIHAAYGS-N-KDVSVYTSVGLKP 496 (559)
Q Consensus 454 ~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~-~DV~aYr~vGI~~ 496 (559)
.++|+.++. +++.+ ...-.=...+|| . +|+.+-+++|+..
T Consensus 91 KP~p~~~~~-~l~~~--~~~~~~~l~IGDs~~~Di~aA~~aGi~~ 132 (170)
T TIGR01668 91 KPPGCAFRR-AHPEM--GLTSEQVAVVGDRLFTDVMGGNRNGSYT 132 (170)
T ss_pred CCChHHHHH-HHHHc--CCCHHHEEEECCcchHHHHHHHHcCCeE
Confidence 445544443 22222 111112566788 4 7999999999954
No 63
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.56 E-value=0.00019 Score=72.49 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=45.9
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
.|+|++||||||.+++. .+.+...+.+++++++|+.+++.|||+.... +..+++.+++
T Consensus 2 ~kli~~DlDGTLl~~~~------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~---~~~~~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH------HLGEKTLSTLARLRERDITLTFATGRHVLEM---QHILGALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCC------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHH---HHHHHHcCCC
Confidence 38999999999997653 2556689999999999999999999998643 3455555654
No 64
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.53 E-value=0.00012 Score=66.58 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=60.4
Q ss_pred CcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecC-CC--CCChhhHHHHHHHHHhhcc
Q psy4654 398 DPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFAD-GL--SPGFLGHKASYLKSLIQDH 472 (559)
Q Consensus 398 D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~-g~--~~dp~~~K~~~L~~L~~~~ 472 (559)
..++.+|+.++++.|+++|+.++.+|..+. +..+.=|+++|+. ++.++..+ .. .++|..++. +++.+ ++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~---~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~-~~~~~--~~ 148 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSR---ERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRR-ALEKL--GI 148 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEH---HHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHH-HHHHH--TS
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCc---ccccccccccccccccccccccchhhhhhhHHHHHHH-HHHHc--CC
Confidence 345899999999999999999999999864 3444555666655 55566553 22 233333322 22222 12
Q ss_pred CCcEEEEeCC-ccchhHHHhcCCCC
Q psy4654 473 GVVIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 473 ~~~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.-.=...+|| ..|+.+-+++|+.+
T Consensus 149 ~p~~~~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 149 PPEEILFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp SGGGEEEEESSHHHHHHHHHTTSEE
T ss_pred CcceEEEEeCCHHHHHHHHHcCCeE
Confidence 2223566777 68999999999865
No 65
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.52 E-value=0.00075 Score=65.47 Aligned_cols=90 Identities=22% Similarity=0.168 Sum_probs=59.8
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
+.+|+.++++.++++|+.+..+|+.+.. ..+..|++.|+. ++.++..+. ..++|+.++. .++.+ .....
T Consensus 95 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~---~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~-~~~~~--~~~~~ 168 (221)
T TIGR02253 95 VYPGVRDTLMELRESGYRLGIITDGLPV---KQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYA-ALKRL--GVKPE 168 (221)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHH-HHHHc--CCChh
Confidence 5679999999999999999999987643 234457777763 455555432 2345554443 23333 11112
Q ss_pred EEEEeCC-c-cchhHHHhcCCCC
Q psy4654 476 IHAAYGS-N-KDVSVYTSVGLKP 496 (559)
Q Consensus 476 i~aafGN-~-~DV~aYr~vGI~~ 496 (559)
=...+|| . .|+.+-+++|+.+
T Consensus 169 ~~~~igDs~~~di~~A~~aG~~~ 191 (221)
T TIGR02253 169 EAVMVGDRLDKDIKGAKNLGMKT 191 (221)
T ss_pred hEEEECCChHHHHHHHHHCCCEE
Confidence 2467888 5 7999999999987
No 66
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.51 E-value=0.00028 Score=70.66 Aligned_cols=58 Identities=17% Similarity=0.405 Sum_probs=45.2
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
.|+|+|||||||.+++.. +.+...+.+++++++|+.|++.|||+... +...+.+-++.
T Consensus 3 ~kli~~DlDGTLl~~~~~------i~~~~~~ai~~~~~~G~~~~iaTGR~~~~---~~~~~~~l~~~ 60 (272)
T PRK10530 3 YRVIALDLDGTLLTPKKT------ILPESLEALARAREAGYKVIIVTGRHHVA---IHPFYQALALD 60 (272)
T ss_pred ccEEEEeCCCceECCCCc------cCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHHHHhcCCC
Confidence 489999999999977542 44557899999999999999999999754 33445555554
No 67
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.49 E-value=0.00057 Score=73.73 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=61.8
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
+.+|+.++++.|+++|+.+.++|+.+ ++.+...|++.|+. ++.++..+. ..++|+.|. .+++.+ .....
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~---~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl-~A~~~l--gl~Pe 290 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRP---RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFI-YAAQLL--NFIPE 290 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHH-HHHHHc--CCCcc
Confidence 56899999999999999999999977 44555667777774 455555442 234554444 233333 11122
Q ss_pred EEEEeCC-ccchhHHHhcCCCC
Q psy4654 476 IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 476 i~aafGN-~~DV~aYr~vGI~~ 496 (559)
=...+|| ..||.+-+++|+.+
T Consensus 291 ecl~IGDS~~DIeAAk~AGm~~ 312 (381)
T PLN02575 291 RCIVFGNSNQTVEAAHDARMKC 312 (381)
T ss_pred cEEEEcCCHHHHHHHHHcCCEE
Confidence 2567999 68999999999954
No 68
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.48 E-value=0.00038 Score=77.94 Aligned_cols=113 Identities=12% Similarity=0.231 Sum_probs=73.6
Q ss_pred CCCeeEEEeeccceecccc--c---cCCCcc-cchhHHHHHHHHHHCCCeEEEEecCCch---------hhHHHHHHHhh
Q psy4654 375 PRTEVVVFSVDGSFTASVS--V---TGRDPK-VRAGAVDIVRHWQELGYLIIYITGRPDM---------QQGRVLSWLSQ 439 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~--~---~g~D~~-~~~GA~elv~~l~~~GY~IIYLTaRp~~---------~~~~T~~WL~q 439 (559)
+..|++.||.||||....+ . -..||. ..+||.+.++.|+++||.|+++|.-+.- ....+...|++
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~ 245 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAK 245 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHH
Confidence 3559999999999986543 1 123553 5899999999999999999999986552 23456778888
Q ss_pred CCCCCceeEecC-CCCCChhhHHHHHHHHHhhccCCcEEEEeCCccchhHHHhcCCCCCcEEEEcCCC
Q psy4654 440 HNFPHGLVSFAD-GLSPGFLGHKASYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 440 hglP~G~L~lr~-g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN~~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
.|+|...++..+ +..++| +..++..++...+ ..+||++++.|.||...
T Consensus 246 lgipfdviia~~~~~~RKP---~pGm~~~a~~~~~----------------~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 246 LGVPFQVFIAIGAGFYRKP---LTGMWDHLKEEAN----------------DGTEIQEDDCFFVGDAA 294 (526)
T ss_pred cCCceEEEEeCCCCCCCCC---CHHHHHHHHHhcC----------------cccCCCHHHeEEeCCcc
Confidence 999977444332 223344 3444554432110 01356666777777654
No 69
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.48 E-value=0.00034 Score=70.98 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeE
Q psy4654 375 PRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVS 448 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~ 448 (559)
...++|++||||||.+++.. ..+-..+.+++++++|++|++.|||+..... ..+++-+++..+++
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~---~~~~~l~~~~~~~I 69 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY------DWQPAAPWLTRLREAQVPVILCSSKTAAEML---PLQQTLGLQGLPLI 69 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHH---HHHHHhCCCCCcEE
Confidence 35689999999999976432 2344788999999999999999999975543 33344455323344
No 70
>PRK11590 hypothetical protein; Provisional
Probab=97.47 E-value=0.00089 Score=65.67 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=65.6
Q ss_pred cchhHHHHH-HHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC-CCceeEec------CC-CCC--ChhhHHHHHHHHHh
Q psy4654 401 VRAGAVDIV-RHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF-PHGLVSFA------DG-LSP--GFLGHKASYLKSLI 469 (559)
Q Consensus 401 ~~~GA~elv-~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl-P~G~L~lr------~g-~~~--dp~~~K~~~L~~L~ 469 (559)
+.+||.+++ +++++.|+.++.+|+.+....+ .+++..++ +-..++-. .| +.. ---.-|+..|++.+
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~---~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~ 172 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSPQPLVE---QVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKI 172 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCcHHHHH---HHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHh
Confidence 468999999 6788899999999999875544 44444332 11122211 11 100 00135888888765
Q ss_pred hccCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCc
Q psy4654 470 QDHGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSK 507 (559)
Q Consensus 470 ~~~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~ 507 (559)
. .......+||| ..|+.+...+|-+ |.|||..+
T Consensus 173 ~-~~~~~~~aY~Ds~~D~pmL~~a~~~----~~vnp~~~ 206 (211)
T PRK11590 173 G-TPLRLYSGYSDSKQDNPLLYFCQHR----WRVTPRGE 206 (211)
T ss_pred C-CCcceEEEecCCcccHHHHHhCCCC----EEECccHH
Confidence 2 35566789999 6999999999876 68998753
No 71
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.0004 Score=69.01 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=73.2
Q ss_pred cccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC-------CCCCceeEecCCCC--CChhhHHHHHHHHHh
Q psy4654 399 PKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH-------NFPHGLVSFADGLS--PGFLGHKASYLKSLI 469 (559)
Q Consensus 399 ~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh-------glP~G~L~lr~g~~--~dp~~~K~~~L~~L~ 469 (559)
++..+|+.++++.++++|++++++||=+....+...+-|.-. .+..| .+.+... .=...-|...|+++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG--~ltG~v~g~~~~~~~K~~~l~~~~ 153 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDG--KLTGRVVGPICDGEGKAKALRELA 153 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCC--EEeceeeeeecCcchHHHHHHHHH
Confidence 568999999999999999999999999987776665555311 11122 1111000 000135889998887
Q ss_pred hccCCc--EEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCc
Q psy4654 470 QDHGVV--IHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSK 507 (559)
Q Consensus 470 ~~~~~~--i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~ 507 (559)
...++. =..+||| .+|+.+...+|.+ +.+|+..+
T Consensus 154 ~~~g~~~~~~~a~gDs~nDlpml~~ag~~----ia~n~~~~ 190 (212)
T COG0560 154 AELGIPLEETVAYGDSANDLPMLEAAGLP----IAVNPKPK 190 (212)
T ss_pred HHcCCCHHHeEEEcCchhhHHHHHhCCCC----eEeCcCHH
Confidence 655654 6889999 7999999999998 47888754
No 72
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.45 E-value=0.00018 Score=70.06 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=38.7
Q ss_pred EEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHH
Q psy4654 380 VVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGR 432 (559)
Q Consensus 380 VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~ 432 (559)
|+|||||||.+++.. +.+.+.+.+++++++|+.++++|||+......
T Consensus 1 i~~DlDGTLl~~~~~------i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~ 47 (225)
T TIGR01482 1 IASDIDGTLTDPNRA------INESALEAIRKAESVGIPVVLVTGNSVQFARA 47 (225)
T ss_pred CeEeccCccCCCCcc------cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH
Confidence 589999999987532 44557889999999999999999999865543
No 73
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.44 E-value=0.00036 Score=69.76 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=44.2
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH 444 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~ 444 (559)
+|+|||||||.+++. .+.+.+.+.+++++++|+.++++|||+.. ..+.-+.+.++..
T Consensus 1 li~~DlDGTLl~~~~------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~---~~~~~~~~~~~~~ 57 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH------TISPSTKEALAKLREKGIKVVLATGRPYK---EVKNILKELGLDT 57 (256)
T ss_pred CEEEeCCCCCCCCCC------ccCHHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCCCC
Confidence 478999999997642 25567899999999999999999999954 3344556666654
No 74
>PRK06769 hypothetical protein; Validated
Probab=97.42 E-value=0.00079 Score=64.36 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=73.9
Q ss_pred CCeeEEEeeccceeccccccCC-CcccchhHHHHHHHHHHCCCeEEEEecCCchhh-----HHHHHHHhhCCCCCceeEe
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGR-DPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQ-----GRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~-D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~-----~~T~~WL~qhglP~G~L~l 449 (559)
+-+++++|.||||-..+.+... +..+.+|+.++++.|+++||++.++|.-+..+. ..+..=|+..|+. .++.
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~--~~~~ 80 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD--DIYL 80 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC--EEEE
Confidence 4589999999999655444443 345789999999999999999999998764221 1122225555653 3332
Q ss_pred c-----CC---CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCC
Q psy4654 450 A-----DG---LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPR 497 (559)
Q Consensus 450 r-----~g---~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~ 497 (559)
. +. ..++|+.++.. ++.+ .....=..-+|| ..|+.+-+++|+..-
T Consensus 81 ~~~~~~~~~~~~KP~p~~~~~~-~~~l--~~~p~~~i~IGD~~~Di~aA~~aGi~~i 134 (173)
T PRK06769 81 CPHKHGDGCECRKPSTGMLLQA-AEKH--GLDLTQCAVIGDRWTDIVAAAKVNATTI 134 (173)
T ss_pred CcCCCCCCCCCCCCCHHHHHHH-HHHc--CCCHHHeEEEcCCHHHHHHHHHCCCeEE
Confidence 2 11 24556555533 3333 111111344567 799999999999654
No 75
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.42 E-value=0.00063 Score=65.18 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=66.0
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCc--e-eEe-cCC-CC---CCh---hhHHHHHHHHHh
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHG--L-VSF-ADG-LS---PGF---LGHKASYLKSLI 469 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G--~-L~l-r~g-~~---~dp---~~~K~~~L~~L~ 469 (559)
+.+|+.++++.++++|+.++.+|+-+... .+.|+++.|++.- . +.. .+| .. ..| ...|...++.++
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~---v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTIL---VKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 68899999999999999999999988654 4456666666431 1 222 111 00 001 135787888776
Q ss_pred hccCC--cEEEEeCC-ccchhHHHhcCCCCCcEEEEcCC
Q psy4654 470 QDHGV--VIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 470 ~~~~~--~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
...++ .-..+||| ..|+.+.+.+|.+ +.||+.
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~----~~v~~~ 199 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHP----YVVNPD 199 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCc----EEeCCC
Confidence 54443 34577999 7999999999976 467765
No 76
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.41 E-value=0.00029 Score=72.07 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=47.4
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
.++|+|||||||..+. .+.+|+.+.+++|+++|..++++|+|+...+....+-|.+.|++
T Consensus 2 ~~~~~~D~DGtl~~~~-------~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~ 61 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGE-------RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFN 61 (279)
T ss_pred ccEEEEeCCCceEcCC-------eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3789999999997642 35788999999999999999999999866555555555665553
No 77
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.41 E-value=0.0006 Score=65.61 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=68.4
Q ss_pred CeeEEEeeccceecccc---ccCCCcccchhHH--HHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecC
Q psy4654 377 TEVVVFSVDGSFTASVS---VTGRDPKVRAGAV--DIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFAD 451 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~---~~g~D~~~~~GA~--elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~ 451 (559)
.|++||||||+||+... .-|...+ .-.+. .-++.|+++|+.+.++|+.+.. .++..|++.++.. ++ .
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g~~~~-~~~~~D~~~~~~L~~~Gi~laIiT~k~~~---~~~~~l~~lgi~~--~f-~- 78 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEGIESR-NFDIKDGMGVIVLQLCGIDVAIITSKKSG---AVRHRAEELKIKR--FH-E- 78 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCCcEEE-EEecchHHHHHHHHHCCCEEEEEECCCcH---HHHHHHHHCCCcE--EE-e-
Confidence 68999999999999853 2333221 11112 2367788899999999998654 5566788888762 12 1
Q ss_pred CCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 452 GLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 452 g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
...++|+.++ .+++.+ .....=...+|| .+|+.+.+.+|++
T Consensus 79 ~~kpkp~~~~-~~~~~l--~~~~~ev~~iGD~~nDi~~~~~ag~~ 120 (169)
T TIGR02726 79 GIKKKTEPYA-QMLEEM--NISDAEVCYVGDDLVDLSMMKRVGLA 120 (169)
T ss_pred cCCCCHHHHH-HHHHHc--CcCHHHEEEECCCHHHHHHHHHCCCe
Confidence 2345553322 222222 111123678999 6999999999975
No 78
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.40 E-value=0.00065 Score=71.67 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=71.0
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCce---eEecCC--------CCCChhhHHHHHHHHH
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGL---VSFADG--------LSPGFLGHKASYLKSL 468 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~---L~lr~g--------~~~dp~~~K~~~L~~L 468 (559)
++.+|+.++++.+++.|+++.++|+-.... +...+++.++.+.. +.+.++ ...+. .-|.+.++.+
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~---~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~-k~K~~~L~~l 256 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYF---ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDA-QYKADTLTRL 256 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchh---HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCc-ccHHHHHHHH
Confidence 478999999999999999999999987654 33444455664311 111111 00011 3588888888
Q ss_pred hhccCC--cEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCccccccceec
Q psy4654 469 IQDHGV--VIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKKHQSQATVL 516 (559)
Q Consensus 469 ~~~~~~--~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~~~~~~~~~ 516 (559)
++..++ .-..++|| .+|+.+.+.+|+.. ..|.+ .+.+.+++..
T Consensus 257 a~~lgi~~~qtIaVGDg~NDl~m~~~AGlgi----A~nAk-p~Vk~~Ad~~ 302 (322)
T PRK11133 257 AQEYEIPLAQTVAIGDGANDLPMIKAAGLGI----AYHAK-PKVNEQAQVT 302 (322)
T ss_pred HHHcCCChhhEEEEECCHHHHHHHHHCCCeE----EeCCC-HHHHhhCCEE
Confidence 764444 45788999 79999999999854 34665 3344444443
No 79
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.39 E-value=0.00081 Score=64.49 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHH--hhCCCC--CceeEecCCCCCChhhHHHHHHHHHhhccCCcE
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWL--SQHNFP--HGLVSFADGLSPGFLGHKASYLKSLIQDHGVVI 476 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL--~qhglP--~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i 476 (559)
+.+|+.+++++|+++ +.++++|+.+..........+ .+ -++ ++.++..+...++|+.++. +++.+ +..-
T Consensus 75 ~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~-~f~~~f~~i~~~~~~~~kp~~~~~-a~~~~----~~~~ 147 (197)
T PHA02597 75 AYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNA-LFPGAFSEVLMCGHDESKEKLFIK-AKEKY----GDRV 147 (197)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHH-hCCCcccEEEEeccCcccHHHHHH-HHHHh----CCCc
Confidence 689999999999887 567888886654332222211 11 111 2334444333334532222 22333 3233
Q ss_pred EEEeCC-ccchhHHHhc--CCCCC
Q psy4654 477 HAAYGS-NKDVSVYTSV--GLKPR 497 (559)
Q Consensus 477 ~aafGN-~~DV~aYr~v--GI~~~ 497 (559)
..-+|| ..|+.+-+++ ||+.-
T Consensus 148 ~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 148 VCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred EEEeCCCHHHHHHHHHHHcCCcEE
Confidence 557899 6899999998 99843
No 80
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.39 E-value=0.0013 Score=63.10 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=53.7
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeEecCCC---CCChhhHHHHHHHHHhhccCCc
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVSFADGL---SPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~lr~g~---~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
+.+|+.++++.++++|+.+..+|.-+.. .+..|++.++ .++.++..+.. .++|+.|.. +++.+ .....
T Consensus 106 ~~~g~~~~l~~L~~~g~~~~i~Sn~~~~----~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~-~~~~~--~~~~~ 178 (203)
T TIGR02252 106 VYPDAIKLLKDLRERGLILGVISNFDSR----LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQE-ALERA--GISPE 178 (203)
T ss_pred eCcCHHHHHHHHHHCCCEEEEEeCCchh----HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHH-HHHHc--CCChh
Confidence 4688889999999999999999975532 3455777776 34555554321 334433332 22332 11111
Q ss_pred EEEEeCC-c-cchhHHHhcCCCC
Q psy4654 476 IHAAYGS-N-KDVSVYTSVGLKP 496 (559)
Q Consensus 476 i~aafGN-~-~DV~aYr~vGI~~ 496 (559)
=....|| . .||.+-+++|+.+
T Consensus 179 ~~~~IgD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 179 EALHIGDSLRNDYQGARAAGWRA 201 (203)
T ss_pred HEEEECCCchHHHHHHHHcCCee
Confidence 2355777 4 6888888888753
No 81
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.38 E-value=0.00038 Score=69.89 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=46.6
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEe
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~l 449 (559)
.|++||||||.+++.. ..+.+.+.+++++++|+.++++|||+... ...++++.+++. +++.
T Consensus 1 li~~DlDGTll~~~~~------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~---~~~~~~~~~~~~-~~I~ 61 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGY------DWGPAKEVLERLQELGIPVIPCTSKTAAE---VEYLRKELGLED-PFIV 61 (256)
T ss_pred CEEEcCCCCCcCCCCc------CchHHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCCC-cEEE
Confidence 4789999999987631 22347899999999999999999999764 456777777763 3443
No 82
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.37 E-value=0.0006 Score=67.42 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=66.2
Q ss_pred cchhHHHHHH-HHHHCCCeEEEEecCCchhhHHHHH---HHhh-CCCCCceeEecC-CCCCCh---hhHHHHHHHHHhhc
Q psy4654 401 VRAGAVDIVR-HWQELGYLIIYITGRPDMQQGRVLS---WLSQ-HNFPHGLVSFAD-GLSPGF---LGHKASYLKSLIQD 471 (559)
Q Consensus 401 ~~~GA~elv~-~l~~~GY~IIYLTaRp~~~~~~T~~---WL~q-hglP~G~L~lr~-g~~~dp---~~~K~~~L~~L~~~ 471 (559)
+.|||.++++ +++++|+.++++||-++...+...+ |+.. +-+ .-.+...+ |....+ -.-|+..|++.+.
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i-~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~- 172 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLI-ASQIERGNGGWVLPLRCLGHEKVAQLEQKIG- 172 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEE-EEEeEEeCCceEcCccCCChHHHHHHHHHhC-
Confidence 5799999995 7888999999999998766554432 2221 111 11111111 100000 1358888887653
Q ss_pred cCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCcc
Q psy4654 472 HGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKK 508 (559)
Q Consensus 472 ~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~ 508 (559)
.......+||| ..|..+...+|-+ +.|||..+.
T Consensus 173 ~~~~~~~aYsDS~~D~pmL~~a~~~----~~Vnp~~~L 206 (210)
T TIGR01545 173 SPLKLYSGYSDSKQDNPLLAFCEHR----WRVSKRGEL 206 (210)
T ss_pred CChhheEEecCCcccHHHHHhCCCc----EEECcchHh
Confidence 35567789999 6999999999877 689998643
No 83
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.36 E-value=0.0011 Score=65.32 Aligned_cols=89 Identities=16% Similarity=0.245 Sum_probs=60.3
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecC-CC--CCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFAD-GL--SPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~-g~--~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.+.+|+.+++..|+++||++.++|+++....+.+ |+++|+- ++.++-.+ .. .++| ......+..+ +.
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~---l~~~gl~~~F~~i~g~~~~~~~KP~P-~~l~~~~~~~----~~ 160 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERELDIL---LKALGLADYFDVIVGGDDVPPPKPDP-EPLLLLLEKL----GL 160 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHH---HHHhCCccccceEEcCCCCCCCCcCH-HHHHHHHHHh----CC
Confidence 4689999999999999999999999988766655 5556653 33333312 22 3455 2333444444 33
Q ss_pred c--EEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 V--IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~--i~aafGN-~~DV~aYr~vGI~~ 496 (559)
. =..-.|| ..|+.+-+++|+++
T Consensus 161 ~~~~~l~VGDs~~Di~aA~~Ag~~~ 185 (220)
T COG0546 161 DPEEALMVGDSLNDILAAKAAGVPA 185 (220)
T ss_pred ChhheEEECCCHHHHHHHHHcCCCE
Confidence 3 2466788 68999999999663
No 84
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.35 E-value=0.00038 Score=70.27 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=50.3
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEe
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSF 449 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~l 449 (559)
+.|+|||||||...+. +.+++++.+++++++|..++++|+.+....+...+.|++.|++ .+.++.
T Consensus 2 ~~~~~D~DGtl~~~~~-------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit 68 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE-------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFT 68 (249)
T ss_pred CEEEEeCCCceEcCCe-------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEee
Confidence 6899999999997642 3568999999999999999999986655556667777777664 333544
No 85
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.35 E-value=0.00033 Score=70.31 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=44.8
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHH
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWL 437 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL 437 (559)
.|.|+|||||||..++.. ..+-..+.+++++++|+.+++.|||+........+-|
T Consensus 3 ~kli~~DlDGTLl~~~~~------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l 57 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEEL 57 (264)
T ss_pred eeEEEEcCCCCccCCCCc------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc
Confidence 489999999999988654 6677899999999999999999999985544443333
No 86
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.34 E-value=0.0005 Score=68.53 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=43.4
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH 444 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~ 444 (559)
+|+|||||||.+++. ..+.+.+.+++++++|+.++++|||+... ....+++.|+..
T Consensus 1 li~~DlDGTLl~~~~-------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~---~~~~~~~lg~~~ 56 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY-------EPGPAREALEELKDLGFPIVFVSSKTRAE---QEYYREELGVEP 56 (225)
T ss_pred CEEEeCCCCCcCCCC-------CchHHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHHHcCCCC
Confidence 489999999987431 23458999999999999999999999764 344566666644
No 87
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.34 E-value=0.0012 Score=61.89 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=58.9
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--ceeEecCC----------C-------CCChh-h
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--GLVSFADG----------L-------SPGFL-G 459 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G~L~lr~g----------~-------~~dp~-~ 459 (559)
++.+|+.++++.++++|+.+.++|+.... ..+.+|++.+++. +.++-.+. . ...+. .
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDF---FIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC 148 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHH---HHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence 47889999999999999999999987653 3445566666642 23332110 0 01111 2
Q ss_pred HHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 460 HKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 460 ~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.|.+.++.+.... ..-...+|| .+|+.+-+++++-
T Consensus 149 ~K~~~~~~~~~~~-~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 149 CKGKVIHKLSEPK-YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred CHHHHHHHHHhhc-CceEEEECCCcchhchHhcCCcc
Confidence 4888888875421 334566688 7898888877543
No 88
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.33 E-value=0.00052 Score=67.00 Aligned_cols=62 Identities=19% Similarity=0.134 Sum_probs=44.7
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEe
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~l 449 (559)
.|++||||||.+++.. . +.+ +.+.++.++++|+.++++|||+.... +..+++.+++..+++.
T Consensus 1 ~i~~DlDGTLL~~~~~---~--~~~-~~~~l~~l~~~gi~~~i~TgR~~~~~---~~~~~~l~~~~~~~I~ 62 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSY---D--WQP-AAPWLTRLQEAGIPVILCTSKTAAEV---EYLQKALGLTGDPYIA 62 (221)
T ss_pred CEEEeCCCCCcCCCCC---C--cHH-HHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHHcCCCCCcEEE
Confidence 3799999999987532 1 233 78999999999999999999998553 4445555664233443
No 89
>PTZ00174 phosphomannomutase; Provisional
Probab=97.33 E-value=0.00031 Score=70.60 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=40.2
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCch
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDM 428 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~ 428 (559)
..|.|+|||||||.+++.. ..+...+.+++++++|+++++.|||+..
T Consensus 4 ~~klia~DlDGTLL~~~~~------is~~~~~ai~~l~~~Gi~~viaTGR~~~ 50 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP------ITQEMKDTLAKLKSKGFKIGVVGGSDYP 50 (247)
T ss_pred CCeEEEEECcCCCcCCCCC------CCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 4689999999999987643 3455789999999999999999999876
No 90
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.30 E-value=0.00045 Score=62.97 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=41.7
Q ss_pred eeEEEeeccceecccc-------ccCCCcccchhHHHHHHHHHHCCCeEEEEecC-Cchhh
Q psy4654 378 EVVVFSVDGSFTASVS-------VTGRDPKVRAGAVDIVRHWQELGYLIIYITGR-PDMQQ 430 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~-------~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaR-p~~~~ 430 (559)
|+++||+||||..... ....| ++.+|+.++++.++++|+.+..+|++ +....
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~-~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~ 60 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLE-VTIKEIRDKLQTLKKNGFLLALASYNDDPHVA 60 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhH-HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHH
Confidence 5799999999998742 12223 47899999999999999999999998 55443
No 91
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=97.29 E-value=0.00084 Score=65.82 Aligned_cols=89 Identities=22% Similarity=0.199 Sum_probs=59.9
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeE-----ecCC----CCCChhh---------HH
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVS-----FADG----LSPGFLG---------HK 461 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~-----lr~g----~~~dp~~---------~K 461 (559)
++++|+.+++..++++|+.+.++|+... .....+|+..+. ...++ +.++ ..++|.. .|
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~---~~i~~il~~~~~-~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K 145 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGMD---FFVYPLLEGIVE-KDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCK 145 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCcH---HHHHHHHHhhCC-cccEEeceeEeeCCeeEEeCCCCCccccccCCCCCH
Confidence 4789999999999999999999999855 344455555432 23332 2211 1223332 38
Q ss_pred HHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 462 ASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 462 ~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
...++++.. ...-...+|| .+|+.+-+.+|+
T Consensus 146 ~~~l~~~~~--~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 146 PSLIRKLSE--PNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHHHhh--cCCcEEEEeCCHHHHHHHHhCCe
Confidence 888988743 2233467899 799999998887
No 92
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.28 E-value=0.00092 Score=69.88 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=42.0
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHH
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLS 435 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~ 435 (559)
+|+|++||||||.+++.. ..+-+.+.+++++++|..|++.|||+..-....++
T Consensus 1 ~KLIftDLDGTLLd~~~~------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~ 53 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFN------SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCR 53 (302)
T ss_pred CcEEEEeCCCCCcCCCCc------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 488999999999987643 23447899999999999999999998764444433
No 93
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.27 E-value=0.00045 Score=70.24 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=45.5
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
.|+|++||||||.+++. .+.+.+.+++++++++|+.++.+|||+...... -+++.+++
T Consensus 4 ~kli~~DlDGTLl~~~~------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~---~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEV---LRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCC------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH---HHHHcCCC
Confidence 58999999999997643 245678999999999999999999998755433 34555654
No 94
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.27 E-value=0.0017 Score=64.87 Aligned_cols=104 Identities=11% Similarity=0.100 Sum_probs=69.3
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC---ceeEecCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH---GLVSFADG 452 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~---G~L~lr~g 452 (559)
.-++|+||+||||.... .+.+||.++++.|+++|+++.++|..+....+ ..+.|++.|++. +.++..+
T Consensus 7 ~~~~~~~D~dG~l~~~~-------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~-~~~~L~~~gl~~~~~~~Ii~s~- 77 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGN-------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFS-LHKTLKSLGINADLPEMIISSG- 77 (242)
T ss_pred cCCEEEEecccccccCC-------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHH-HHHHHHHCCCCccccceEEccH-
Confidence 45789999999997642 36899999999999999999999997654332 346789999875 3343332
Q ss_pred CCCChhhHHHHHHHHHhhccCC--cEEEEeCC-ccchhHHHhcCC
Q psy4654 453 LSPGFLGHKASYLKSLIQDHGV--VIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 453 ~~~dp~~~K~~~L~~L~~~~~~--~i~aafGN-~~DV~aYr~vGI 494 (559)
..-.+.+..+.+..+. .-....|+ ..|+......|+
T Consensus 78 ------~~~~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 78 ------EIAVQMILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred ------HHHHHHHHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 1112344433222222 23456778 567777766665
No 95
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.27 E-value=0.0016 Score=60.75 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=57.3
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
++.+|+.++++.++++|+.+..+|+-+... . ..+.+.|+. ++.++..+. ..++|..++.. ++.+ ....
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~---~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~-~~~~--~~~~ 157 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-A---VLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLA-LKKL--GLKP 157 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-H---HHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHH-HHHc--CCCc
Confidence 467999999999999999999999987654 2 223335553 455554422 23455555433 3333 1222
Q ss_pred cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.=...+|| ..|+.+-+++|+..
T Consensus 158 ~~~~~vgD~~~di~aA~~~G~~~ 180 (183)
T TIGR01509 158 EECLFVDDSPAGIEAAKAAGMHT 180 (183)
T ss_pred ceEEEEcCCHHHHHHHHHcCCEE
Confidence 22455678 68999999999853
No 96
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.21 E-value=0.00048 Score=64.85 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=60.0
Q ss_pred hhHH----HHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCC-----C----CCChhh--HHHHHHHH
Q psy4654 403 AGAV----DIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADG-----L----SPGFLG--HKASYLKS 467 (559)
Q Consensus 403 ~GA~----elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g-----~----~~dp~~--~K~~~L~~ 467 (559)
++++ ++++.++++|+.|+++||-+. ..++.++++.|+|...++-.+. . .-.+.. -|..+++.
T Consensus 88 ~~~~~~~~e~i~~~~~~~~~v~IvS~~~~---~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~ 164 (192)
T PF12710_consen 88 PGFIPDAMELIRELKDNGIKVVIVSGSPD---EIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKE 164 (192)
T ss_dssp TTCHTTHHHHHHHHHHTTSEEEEEEEEEH---HHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHCCCEEEEECCCcH---HHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHH
Confidence 5556 999999999999999999754 5566667788999866554321 0 000111 39999999
Q ss_pred H---hh-ccCCcEEEEeCC-ccchhHHH
Q psy4654 468 L---IQ-DHGVVIHAAYGS-NKDVSVYT 490 (559)
Q Consensus 468 L---~~-~~~~~i~aafGN-~~DV~aYr 490 (559)
+ .. ..+.....++|| .+|+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 165 LYIRDEEDIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred HHHHhhcCCCCCeEEEEECCHHHHHHhC
Confidence 8 22 345678899999 78988764
No 97
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.20 E-value=0.0024 Score=61.93 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=68.4
Q ss_pred CeeEEEeeccceecccc--------------------ccCCCcccchhHHHHHHHHHHCCCeEEEEecC-CchhhHHHHH
Q psy4654 377 TEVVVFSVDGSFTASVS--------------------VTGRDPKVRAGAVDIVRHWQELGYLIIYITGR-PDMQQGRVLS 435 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~--------------------~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaR-p~~~~~~T~~ 435 (559)
++.||||+|+|+-.... ..+....+.+||.++++.|+++|+.+..+|+. +.... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~---~~ 78 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWA---YE 78 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHH---HH
Confidence 68999999999976531 24455568999999999999999999999977 54432 23
Q ss_pred HHhhCCCC-----------CceeEecCCCCCChhhHHHHHHHHHhhc----cCCcEEEEeCC-ccchhHHHhcCCCC
Q psy4654 436 WLSQHNFP-----------HGLVSFADGLSPGFLGHKASYLKSLIQD----HGVVIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 436 WL~qhglP-----------~G~L~lr~g~~~dp~~~K~~~L~~L~~~----~~~~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
-|...++. ++.++..+. ...+... ...++.+... ....=..-+|| ..|+.+-+++|+.+
T Consensus 79 ~L~~~~l~~~~~~~~~~~~Fd~iv~~~~-~~~~kp~-~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 79 ILGTFEITYAGKTVPMHSLFDDRIEIYK-PNKAKQL-EMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred HHHhCCcCCCCCcccHHHhceeeeeccC-CchHHHH-HHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 33444543 222332221 1111001 1123322110 11122355677 68888888888865
No 98
>PLN02940 riboflavin kinase
Probab=97.17 E-value=0.00095 Score=71.80 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHh-hCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLS-QHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~-qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+.+|+.++++.|+++|+.+.++|+.+... +...|+ ..++. .+.++..+. ..++|+.+.. +++.+ ...-
T Consensus 94 l~pGv~elL~~Lk~~g~~l~IvTn~~~~~---~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~-a~~~l--gv~p 167 (382)
T PLN02940 94 ALPGANRLIKHLKSHGVPMALASNSPRAN---IEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLE-AAKRL--NVEP 167 (382)
T ss_pred CCcCHHHHHHHHHHCCCcEEEEeCCcHHH---HHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHH-HHHHc--CCCh
Confidence 57999999999999999999999986443 334554 34552 344554432 2344544332 22333 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.=...+|| ..|+.+-+++|+.+
T Consensus 168 ~~~l~VGDs~~Di~aA~~aGi~~ 190 (382)
T PLN02940 168 SNCLVIEDSLPGVMAGKAAGMEV 190 (382)
T ss_pred hHEEEEeCCHHHHHHHHHcCCEE
Confidence 11455688 68999999999974
No 99
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.16 E-value=0.0027 Score=65.59 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=52.3
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC-CCceeEecCC---CCCChhhHHHHHHHHHhhccCCcE
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF-PHGLVSFADG---LSPGFLGHKASYLKSLIQDHGVVI 476 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl-P~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~i 476 (559)
+.||+.+++..++++|+.+.++|+.+....+...+.+...++ ..-.++..+. -.++|+.+.. +++.+ .....=
T Consensus 145 l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~-a~~~~--~~~p~~ 221 (286)
T PLN02779 145 LRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNL-AAETL--GVDPSR 221 (286)
T ss_pred chhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHH-HHHHh--CcChHH
Confidence 467899999999999999999999765444333222210011 1112222221 1344433332 22333 111111
Q ss_pred EEEeCC-ccchhHHHhcCCCC
Q psy4654 477 HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 477 ~aafGN-~~DV~aYr~vGI~~ 496 (559)
...+|| ..|+.+-+++|+..
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~ 242 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRC 242 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEE
Confidence 445788 68999999999974
No 100
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.15 E-value=0.003 Score=67.59 Aligned_cols=123 Identities=11% Similarity=0.222 Sum_probs=79.9
Q ss_pred CeeEEEeeccceecccc-----ccCCCcccchhHHHHHHHHHHCCCeEEEEecCC-----ch-------hhHHHHHHHhh
Q psy4654 377 TEVVVFSVDGSFTASVS-----VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRP-----DM-------QQGRVLSWLSQ 439 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~-----~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp-----~~-------~~~~T~~WL~q 439 (559)
.|++.||.||||+.... ..-.+..+.+|+.+++..++++||+++++|.-+ .- ..+.+..=|++
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~ 81 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES 81 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH
Confidence 58999999999998643 133345689999999999999999999999842 11 12345556677
Q ss_pred CCCCCceeEecC-----C-CCCChhhHHHHHHHHHhhccC--CcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCC
Q psy4654 440 HNFPHGLVSFAD-----G-LSPGFLGHKASYLKSLIQDHG--VVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 440 hglP~G~L~lr~-----g-~~~dp~~~K~~~L~~L~~~~~--~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
.+++++.++.+. . ..++| |...+..++...+ ..=..-.|| ..|+.+-+++|+.. +.|++.
T Consensus 82 ~gl~fd~i~i~~~~~sd~~~~rKP---~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~---I~v~~~ 150 (354)
T PRK05446 82 QGIKFDEVLICPHFPEDNCSCRKP---KTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKG---IRYARE 150 (354)
T ss_pred cCCceeeEEEeCCcCcccCCCCCC---CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeE---EEEECC
Confidence 898876665541 1 12233 3333333322112 122344577 79999999999974 345653
No 101
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.13 E-value=0.0031 Score=69.09 Aligned_cols=89 Identities=12% Similarity=0.007 Sum_probs=61.3
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCCC--CCChhhHHHHHHHHHhhccCCc
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADGL--SPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g~--~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
++.+|+.++++.++++|+++.++|+.+.. .+..-|+.+++. ++.++..+.. .++|+.+.. +++.+ +..
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~---~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~-al~~l----~~~ 401 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTE---YLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKS-ILNKY----DIK 401 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchH---HHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHH-HHHhc----Ccc
Confidence 35799999999999999999999996654 444556777763 3445444322 256654433 23333 223
Q ss_pred EEEEeCC-ccchhHHHhcCCCC
Q psy4654 476 IHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 476 i~aafGN-~~DV~aYr~vGI~~ 496 (559)
=...+|| ..|+.+-+++|+..
T Consensus 402 ~~v~VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 402 EAAVVGDRLSDINAAKDNGLIA 423 (459)
T ss_pred eEEEEeCCHHHHHHHHHCCCeE
Confidence 3677888 79999999999964
No 102
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.11 E-value=0.0017 Score=61.36 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCcEEEEe
Q psy4654 406 VDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVVIHAAY 480 (559)
Q Consensus 406 ~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~i~aaf 480 (559)
++++..++++ +.+.++|+-+. .....+|++.++. ++.++..+. ..++|+.+... ++.+ .+...=...+
T Consensus 93 ~e~L~~L~~~-~~l~I~T~~~~---~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~-~~~~--~~~~~~~l~i 165 (188)
T PRK10725 93 IEVVKAWHGR-RPMAVGTGSES---AIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRC-AQLM--GVQPTQCVVF 165 (188)
T ss_pred HHHHHHHHhC-CCEEEEcCCch---HHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHH-HHHc--CCCHHHeEEE
Confidence 4777777654 88888888443 3445677777764 344554432 23455443332 2222 1111113446
Q ss_pred CC-ccchhHHHhcCCC
Q psy4654 481 GS-NKDVSVYTSVGLK 495 (559)
Q Consensus 481 GN-~~DV~aYr~vGI~ 495 (559)
|| ..|+.+-+++|++
T Consensus 166 gDs~~di~aA~~aG~~ 181 (188)
T PRK10725 166 EDADFGIQAARAAGMD 181 (188)
T ss_pred eccHhhHHHHHHCCCE
Confidence 88 6899999999986
No 103
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.08 E-value=0.0021 Score=62.18 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=53.9
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC-C-CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF-P-HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl-P-~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
++.+|+.++++.|+++||.+..+|.-+..... ....+.+.++ . ++.++.++. ..++|..|+. +++.+ ....
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~-~~~~~--g~~~ 169 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQL-MLERL--GVAP 169 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHH-HHHHc--CCCH
Confidence 36799999999999999999999976543221 1222333333 1 344544431 2455655543 33333 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.=..-+|| ..|+.+-+++|+..
T Consensus 170 ~~~l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 170 EECVFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred HHeEEEcCCHHHHHHHHHcCCEE
Confidence 11222477 68999999999854
No 104
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.04 E-value=0.0011 Score=63.86 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=39.7
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhH
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQG 431 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~ 431 (559)
.|++|+||||+.++. ..+.+.+.+.+++++++|..++++|||+....+
T Consensus 1 li~~D~DgTL~~~~~-----~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~ 48 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA-----HELSPETIEALERLREAGVKVVLVTGRSLAEIK 48 (204)
T ss_pred CEEEeCcCCCcCCCC-----CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Confidence 478999999998642 235678999999999999999999999975444
No 105
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.98 E-value=0.0034 Score=75.81 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=61.4
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC---CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP---HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP---~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+.+|+.++++.|+++||++.++|+.+.... ...|++.+++ ++.++..+. ..++|+.|. .+++.+ ....
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~---~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~-~a~~~l--gv~p 235 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKV---DANLAAAGLPLSMFDAIVSADAFENLKPAPDIFL-AAAKIL--GVPT 235 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHH---HHHHHHcCCChhHCCEEEECcccccCCCCHHHHH-HHHHHc--CcCc
Confidence 367999999999999999999998755443 3446777775 355554432 245666664 455555 2222
Q ss_pred cEEEEeCC-ccchhHHHhcCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.=...+|| ..|+.+-+++|+.
T Consensus 236 ~e~v~IgDs~~Di~AA~~aGm~ 257 (1057)
T PLN02919 236 SECVVIEDALAGVQAARAAGMR 257 (1057)
T ss_pred ccEEEEcCCHHHHHHHHHcCCE
Confidence 22566899 6899999999984
No 106
>PLN02887 hydrolase family protein
Probab=96.94 E-value=0.0011 Score=75.24 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=47.6
Q ss_pred EEEEeeCCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhh
Q psy4654 368 FYLAVVPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQ 430 (559)
Q Consensus 368 ~~i~v~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~ 430 (559)
+.+-...+..|+|+|||||||.+++.. +.+..++.+++++++|+.|++.|||+....
T Consensus 299 ~~~~~~~~~iKLIa~DLDGTLLn~d~~------Is~~t~eAI~kl~ekGi~~vIATGR~~~~i 355 (580)
T PLN02887 299 GSLRFYKPKFSYIFCDMDGTLLNSKSQ------ISETNAKALKEALSRGVKVVIATGKARPAV 355 (580)
T ss_pred cchhhhccCccEEEEeCCCCCCCCCCc------cCHHHHHHHHHHHHCCCeEEEEcCCCHHHH
Confidence 455667778999999999999977532 456678999999999999999999997654
No 107
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.92 E-value=0.0047 Score=59.69 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=57.2
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
++.+|+.++++.++++ +.+..+|+.+....+.. |++.++. ++.++..+. ..++|..+... ++.+. ++
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~---l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~-~~~~~---~~ 168 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKR---LRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYA-LERMP---KF 168 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHH---HHHCCcHhhcCEEEEcCccCCCCCCHHHHHHH-HHHhc---CC
Confidence 3578899999999999 99999999765443333 4555552 455555432 23555444422 22220 22
Q ss_pred cE--EEEeCC-c-cchhHHHhcCCCC
Q psy4654 475 VI--HAAYGS-N-KDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i--~aafGN-~-~DV~aYr~vGI~~ 496 (559)
.. ....|| . .|+.+-+++|+..
T Consensus 169 ~~~~~v~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 169 SKEEVLMIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred CchheEEECCCcHHHHHHHHHCCCcE
Confidence 22 567788 5 6999999999986
No 108
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.92 E-value=0.0028 Score=66.22 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCeeEEEeeccceeccccccCCCcccc-hhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--ceeEecC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVR-AGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--GLVSFAD 451 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~-~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G~L~lr~ 451 (559)
-+++|+||+||||......+ .++ +|+.+++..++++|+.+..+|+++..... +-|++.|+.. +.++..+
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v----~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~---~~L~~lGLd~YFdvIIs~G 196 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPV----RIRDPRIYDSLTELKKRGCILVLWSYGDRDHVV---ESMRKVKLDRYFDIIISGG 196 (301)
T ss_pred cceEEEEecCCCCcCCCCcc----ccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHHHcCCCcccCEEEECC
Confidence 45899999999998774311 123 79999999999999999999987655443 5778888873 3444443
No 109
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.81 E-value=0.0045 Score=58.73 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=12.6
Q ss_pred eEEEeeccceeccc
Q psy4654 379 VVVFSVDGSFTASV 392 (559)
Q Consensus 379 ~VIfDIDGTlt~sd 392 (559)
+||||+||||.++.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 69999999999884
No 110
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.78 E-value=0.0015 Score=62.22 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=62.3
Q ss_pred eeEEEeeccceeccccc-----cCCCccc-chhHHHHHHHHHHCCCeEEEEec-----CC--c----hhhHHHHHHHhhC
Q psy4654 378 EVVVFSVDGSFTASVSV-----TGRDPKV-RAGAVDIVRHWQELGYLIIYITG-----RP--D----MQQGRVLSWLSQH 440 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~-----~g~D~~~-~~GA~elv~~l~~~GY~IIYLTa-----Rp--~----~~~~~T~~WL~qh 440 (559)
|++.||+||||....+- -..||.. .++|.+.+++++++||.|+++|- +. . ...+.....|+.-
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l 80 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL 80 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence 68899999999776541 2456644 46899999999999999999993 31 1 1123344455556
Q ss_pred CCCCceeEec--CCCCCChhhHHHHHHHHHhhccCCcEEEEeCCccchhHHHhcCCCCCcEEEEcCCCcc
Q psy4654 441 NFPHGLVSFA--DGLSPGFLGHKASYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGLKPRSIYIVGKVSKK 508 (559)
Q Consensus 441 glP~G~L~lr--~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN~~DV~aYr~vGI~~~~If~i~~~~~~ 508 (559)
++|. .++.. .+.-++| +..++..+.+... . .+-|+..+.|.||..+++
T Consensus 81 ~ip~-~~~~a~~~d~~RKP---~~GM~~~~~~~~~--------------~--~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 81 GIPI-QVYAAPHKDPCRKP---NPGMWEFALKDYN--------------D--GVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp TS-E-EEEECGCSSTTSTT---SSHHHHHHCCCTS--------------T--T--S-CCC-EEEESSCHC
T ss_pred CCce-EEEecCCCCCCCCC---chhHHHHHHHhcc--------------c--cccccccceEEEeccCCC
Confidence 6663 22222 1233444 3445554432110 0 234778888999987544
No 111
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.77 E-value=0.0019 Score=60.13 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=54.5
Q ss_pred eeEEEeeccceecccccc-------------CCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC
Q psy4654 378 EVVVFSVDGSFTASVSVT-------------GRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH 444 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~-------------g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~ 444 (559)
|++|+|+||||..+...- +.--..|||+.+.+..+.+. |+|++.|+.....++...++|..++-..
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~ 79 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLF 79 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSE
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhcccc
Confidence 689999999999887431 11124799999999999664 9999999999999999999999766555
Q ss_pred ceeEecC
Q psy4654 445 GLVSFAD 451 (559)
Q Consensus 445 G~L~lr~ 451 (559)
..++.++
T Consensus 80 ~~~~~r~ 86 (159)
T PF03031_consen 80 SRRLYRD 86 (159)
T ss_dssp EEEEEGG
T ss_pred ccccccc
Confidence 6666664
No 112
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.76 E-value=0.0053 Score=59.09 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=13.5
Q ss_pred eeEEEeeccceeccc
Q psy4654 378 EVVVFSVDGSFTASV 392 (559)
Q Consensus 378 k~VIfDIDGTlt~sd 392 (559)
++||||+||||.+|.
T Consensus 1 ~~viFD~DGTLiDs~ 15 (197)
T TIGR01548 1 QALVLDMDGVMADVS 15 (197)
T ss_pred CceEEecCceEEech
Confidence 479999999999986
No 113
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.72 E-value=0.0054 Score=59.81 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=50.4
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--C-ceeEecC-C--CCCChhhHHHHHHHHHhhccCC
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--H-GLVSFAD-G--LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~-G~L~lr~-g--~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+.+|+.++++.+ ++.+..+|+-+. ..+...|++.++- + +.++..+ . ..++|+.+... ++.+ ++
T Consensus 89 ~~~gv~~~L~~L---~~~~~ivTn~~~---~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a-~~~~----~~ 157 (221)
T PRK10563 89 PIAGANALLESI---TVPMCVVSNGPV---SKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHA-AEAM----NV 157 (221)
T ss_pred cCCCHHHHHHHc---CCCEEEEeCCcH---HHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHH-HHHc----CC
Confidence 456777887777 589999998543 4455567766663 2 2233332 1 23455444333 2222 22
Q ss_pred cE--EEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VI--HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i--~aafGN-~~DV~aYr~vGI~~ 496 (559)
.. ..-+|| ..||.+-+++|++.
T Consensus 158 ~p~~~l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 158 NVENCILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCEE
Confidence 11 344567 79999999999974
No 114
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.68 E-value=0.006 Score=63.89 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=51.7
Q ss_pred CCCeeEEEeeccceeccccccCCCcccc-hhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC--ceeEecC
Q psy4654 375 PRTEVVVFSVDGSFTASVSVTGRDPKVR-AGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH--GLVSFAD 451 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~~~g~D~~~~-~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~--G~L~lr~ 451 (559)
.-++.|+||+||||..+...+ ..+ +++.+++..|+++|+.+..+|+.+... .+.-|++.|++. +.+...+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v----~irdp~V~EtL~eLkekGikLaIvTNg~Re~---v~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPV----RIRDPFVYDSLDELKERGCVLVLWSYGNREH---VVHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred eeccEEEEecCCCccCCCCcc----ccCChhHHHHHHHHHHCCCEEEEEcCCChHH---HHHHHHHcCCCccccEEEECC
Confidence 346899999999998874321 123 789999999999999999999765443 366788888862 3344443
No 115
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.64 E-value=0.0053 Score=57.16 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=44.5
Q ss_pred CeeEEEeeccceecccc----ccC----------------CCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHH
Q psy4654 377 TEVVVFSVDGSFTASVS----VTG----------------RDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSW 436 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~----~~g----------------~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~W 436 (559)
.+.+|+|+||||..+.. ... ..-+++||+.+++..++ ++|+|.++|+-+....+...+.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHH
Confidence 46899999999988731 111 11246899999999998 6799999999887766655444
Q ss_pred H
Q psy4654 437 L 437 (559)
Q Consensus 437 L 437 (559)
|
T Consensus 81 l 81 (148)
T smart00577 81 L 81 (148)
T ss_pred h
Confidence 4
No 116
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.63 E-value=0.0084 Score=57.87 Aligned_cols=90 Identities=9% Similarity=0.218 Sum_probs=57.1
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC-CC--CCceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH-NF--PHGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh-gl--P~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+.+|+.++++.++++||.+.++|.-+... ...|+.++ ++ ..+.++.++. ..++|+.|+ .+++.+ ....
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~---~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~-~~~~~~--~~~p 158 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTNRLH---TTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQ-HVLQAE--GFSA 158 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCchhh---HHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHH-HHHHHc--CCCh
Confidence 57899999999999999999999976443 33455443 32 1344555432 245665554 334443 1111
Q ss_pred cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.=..-+|| ..|+.+-+++|+..
T Consensus 159 ~~~l~vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 159 ADAVFFDDNADNIEAANALGITS 181 (199)
T ss_pred hHeEEeCCCHHHHHHHHHcCCEE
Confidence 11344567 68999999999975
No 117
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.58 E-value=0.0043 Score=63.50 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=42.4
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHH-CCCeEEEEecCCchhhHHHHHHHhh
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQE-LGYLIIYITGRPDMQQGRVLSWLSQ 439 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~-~GY~IIYLTaRp~~~~~~T~~WL~q 439 (559)
.+|++|+||||+..... -.+..+.+...+.++.+++ .|..++++|||+.... ..|+..
T Consensus 15 ~li~~D~DGTLl~~~~~-p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~---~~~~~~ 73 (266)
T PRK10187 15 YAWFFDLDGTLAEIKPH-PDQVVVPDNILQGLQLLATANDGALALISGRSMVEL---DALAKP 73 (266)
T ss_pred EEEEEecCCCCCCCCCC-cccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHH---HHhcCc
Confidence 58999999999975211 0112356788999999998 7999999999997654 344543
No 118
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=96.57 E-value=0.008 Score=53.44 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=54.7
Q ss_pred EEEEecCCchhhHHHHHHHhhCCCCCceeEecCC-------CCCChhhHHHHHHHHHhhccC-CcEEEEeCC--ccchhH
Q psy4654 419 IIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADG-------LSPGFLGHKASYLKSLIQDHG-VVIHAAYGS--NKDVSV 488 (559)
Q Consensus 419 IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g-------~~~dp~~~K~~~L~~L~~~~~-~~i~aafGN--~~DV~a 488 (559)
++|||+.|-.+....+++|..+|+|.|++++++- .......+|...+++|+...- ..|+. .|| ..|...
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiL-IGDsgq~Dpei 80 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFIL-IGDSGQHDPEI 80 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEE-EeeCCCcCHHH
Confidence 7899999999999999999999999999999863 122222489999999876432 23333 344 578888
Q ss_pred HHhc
Q psy4654 489 YTSV 492 (559)
Q Consensus 489 Yr~v 492 (559)
|.++
T Consensus 81 Y~~i 84 (100)
T PF09949_consen 81 YAEI 84 (100)
T ss_pred HHHH
Confidence 8764
No 119
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=96.56 E-value=0.0077 Score=57.23 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=55.5
Q ss_pred eeEEEeeccceeccccccCC---C---------------cccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhh
Q psy4654 378 EVVVFSVDGSFTASVSVTGR---D---------------PKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQ 439 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~---D---------------~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~q 439 (559)
+.+|+|+|+||..+...... | -+.|||+.+.+..+.+. |+|+..|+-+...++...+.|.-
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCc
Confidence 68999999999888643221 1 14799999999999987 99999999998888888887775
Q ss_pred CCCCCceeEecC
Q psy4654 440 HNFPHGLVSFAD 451 (559)
Q Consensus 440 hglP~G~L~lr~ 451 (559)
.+.....++.++
T Consensus 81 ~~~~f~~~l~r~ 92 (162)
T TIGR02251 81 GGKVISRRLYRE 92 (162)
T ss_pred CCCEEeEEEEcc
Confidence 443344455554
No 120
>PRK09449 dUMP phosphatase; Provisional
Probab=96.54 E-value=0.011 Score=57.60 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=57.3
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.+.+|+.++++.|+ +||++.++|.-+. +.++.-|++.|+. ++.++.++. ..++|+.|. .+++.+ +.
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~---~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~-~~~~~~----~~ 165 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFT---ELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFD-YALEQM----GN 165 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcH---HHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHH-HHHHHc----CC
Confidence 35789999999998 6899999998543 4445556677763 456666542 234453433 233333 32
Q ss_pred -c--EEEEeCC-c-cchhHHHhcCCCC
Q psy4654 475 -V--IHAAYGS-N-KDVSVYTSVGLKP 496 (559)
Q Consensus 475 -~--i~aafGN-~-~DV~aYr~vGI~~ 496 (559)
+ =..-.|| . .|+.+-+++|+..
T Consensus 166 ~~~~~~~~vgD~~~~Di~~A~~aG~~~ 192 (224)
T PRK09449 166 PDRSRVLMVGDNLHSDILGGINAGIDT 192 (224)
T ss_pred CCcccEEEEcCCcHHHHHHHHHCCCcE
Confidence 2 2455677 5 5999999999975
No 121
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.015 Score=60.14 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=71.2
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC---CCceeEecCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF---PHGLVSFADG 452 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl---P~G~L~lr~g 452 (559)
.-++++||+||||-+ |. .+.|||++.++.|+++|-.++|||-.+...++...+-|.+.+. +.+.++.+.-
T Consensus 7 ~y~~~l~DlDGvl~~-----G~--~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~ 79 (269)
T COG0647 7 KYDGFLFDLDGVLYR-----GN--EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGD 79 (269)
T ss_pred hcCEEEEcCcCceEe-----CC--ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHH
Confidence 447899999999874 33 4689999999999999999999999999999988888888533 4555665531
Q ss_pred CCCChhhHHHHHHHHHhhccCCcEEEEeCCccchhHHHhcCC
Q psy4654 453 LSPGFLGHKASYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGL 494 (559)
Q Consensus 453 ~~~dp~~~K~~~L~~L~~~~~~~i~aafGN~~DV~aYr~vGI 494 (559)
-=..++++-. ...-+...|..-....+..+|+
T Consensus 80 -------at~~~l~~~~---~~~kv~viG~~~l~~~l~~~G~ 111 (269)
T COG0647 80 -------ATADYLAKQK---PGKKVYVIGEEGLKEELEGAGF 111 (269)
T ss_pred -------HHHHHHHhhC---CCCEEEEECCcchHHHHHhCCc
Confidence 1222333321 1123455666666666666664
No 122
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.51 E-value=0.0063 Score=69.93 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=41.4
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHH
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGR 432 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~ 432 (559)
..|+|++||||||.+++.. ..+.+.+.++.++++|+.|+..|||+......
T Consensus 415 ~~KLIfsDLDGTLLd~d~~------i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~ 465 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTY------SYSTALDALRLLKDKELPLVFCSAKTMGEQDL 465 (694)
T ss_pred eeeEEEEECcCCCcCCCCc------cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHH
Confidence 4699999999999987653 22346889999999999999999999764433
No 123
>PLN02423 phosphomannomutase
Probab=96.47 E-value=0.004 Score=62.89 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=37.2
Q ss_pred CCCeeEE-EeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCc
Q psy4654 375 PRTEVVV-FSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPD 427 (559)
Q Consensus 375 ~~~k~VI-fDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~ 427 (559)
+.+++++ |||||||.+++.. ..+...+++++++++ +.++..|||+.
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~~------i~~~~~~ai~~l~~~-i~fviaTGR~~ 50 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRKE------ATPEMLEFMKELRKV-VTVGVVGGSDL 50 (245)
T ss_pred CccceEEEEeccCCCcCCCCc------CCHHHHHHHHHHHhC-CEEEEECCcCH
Confidence 4678676 9999999987643 345678999999977 99999999954
No 124
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.40 E-value=0.0084 Score=59.14 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=76.4
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCc---eeEecC-C-C----CCChhhHHHHHHHHHhh
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHG---LVSFAD-G-L----SPGFLGHKASYLKSLIQ 470 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G---~L~lr~-g-~----~~dp~~~K~~~L~~L~~ 470 (559)
.+.+|+.++++.++++| +++.+||-... .+..++++.|+++- .+...+ + . ...+ ..|...++.+.
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~---~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~-~~K~~~l~~l~- 141 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYE---FSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQK-DPKRQSVIAFK- 141 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHH---HHHHHHHHcCCchhhceeeEEecCCeeECeeecCc-chHHHHHHHHH-
Confidence 47999999999999975 99999986554 55666777777531 122212 1 0 0111 36888888874
Q ss_pred ccCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCccccccc--eecchhHHHHHHHHhhc
Q psy4654 471 DHGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKKHQSQA--TVLSDGYAAHLTALQQH 530 (559)
Q Consensus 471 ~~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~~~~~~--~~~~~~Y~~hL~~l~~~ 530 (559)
..+. -...+|| .+|+.+.+.+|++.. ++.+ ...+..+ -...+.|++-+..+-..
T Consensus 142 ~~~~-~~v~vGDs~nDl~ml~~Ag~~ia----~~ak-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 142 SLYY-RVIAAGDSYNDTTMLSEAHAGIL----FHAP-ENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred hhCC-CEEEEeCCHHHHHHHHhCCCCEE----ecCC-HHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 3333 3668999 799999999998853 3332 1222222 23478888776666544
No 125
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=96.39 E-value=0.015 Score=56.92 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=87.3
Q ss_pred CCeeEEEeeccceecccc------------------------c----cCCCcccchhHHHHHHHHHHCCCeEEEEecCCc
Q psy4654 376 RTEVVVFSVDGSFTASVS------------------------V----TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPD 427 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~------------------------~----~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~ 427 (559)
.+=+|-||||-|+-=|.. + ..++.-+.+-|.+|+.+-+.+|-.|+++|||..
T Consensus 62 ~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~ 141 (237)
T COG3700 62 PPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTP 141 (237)
T ss_pred CCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 556789999999976641 0 222334567789999999999999999999999
Q ss_pred hhhHHHHHHHhhC-CC-CCceeEecCCCCCChhh-HHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcEEEE
Q psy4654 428 MQQGRVLSWLSQH-NF-PHGLVSFADGLSPGFLG-HKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIV 502 (559)
Q Consensus 428 ~~~~~T~~WL~qh-gl-P~G~L~lr~g~~~dp~~-~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i 502 (559)
+-.+.+-.=|++. .+ -..++.+.+. ..+|.. .|..++++- + +--.||+ +.||.+-+.+|+-.-||.--
T Consensus 142 gk~d~vsk~Lak~F~i~~m~pv~f~Gd-k~k~~qy~Kt~~i~~~----~--~~IhYGDSD~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 142 GKTDTVSKTLAKNFHITNMNPVIFAGD-KPKPGQYTKTQWIQDK----N--IRIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred CcccccchhHHhhcccCCCcceeeccC-CCCcccccccHHHHhc----C--ceEEecCCchhhhHHHhcCccceeEEec
Confidence 8877777778763 33 2445666542 334443 477777664 3 3456899 79999999999999888653
No 126
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.36 E-value=0.0061 Score=61.03 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=45.7
Q ss_pred EEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhh-CCCC
Q psy4654 380 VVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQ-HNFP 443 (559)
Q Consensus 380 VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~q-hglP 443 (559)
|+||+||||.++. .+.++|.+.++.++++|+.++++|--+-.-.+...+.|.+ .|++
T Consensus 1 ~lfD~DGvL~~~~-------~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~ 58 (236)
T TIGR01460 1 FLFDIDGVLWLGH-------KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD 58 (236)
T ss_pred CEEeCcCccCcCC-------ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 6899999998764 2467899999999999999999996665556666677777 4654
No 127
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.31 E-value=0.018 Score=58.77 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCCCeeEEEeeccceeccccc--------c---CCC---------cccchhHHHHHHHHHHCCCeEEEEecCCchh-hHH
Q psy4654 374 PPRTEVVVFSVDGSFTASVSV--------T---GRD---------PKVRAGAVDIVRHWQELGYLIIYITGRPDMQ-QGR 432 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~~--------~---g~D---------~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~-~~~ 432 (559)
....++||.|||-|+-+.... . .++ .++.|||+|.++.-.++|-.|+|+|-|.... ..-
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~ 155 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDG 155 (274)
T ss_pred cCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccch
Confidence 446789999999999987631 1 222 2578999999999999999999999999877 899
Q ss_pred HHHHHhhCCCCCc---eeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC
Q psy4654 433 VLSWLSQHNFPHG---LVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS 482 (559)
Q Consensus 433 T~~WL~qhglP~G---~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN 482 (559)
|.+=|.+.|||.- .+++-.+-. -|..-.+.+ +.+..|+--+||
T Consensus 156 T~~nLk~~g~~~~~~~~~llkk~~k-----~Ke~R~~~v--~k~~~iVm~vGD 201 (274)
T COG2503 156 TIENLKSEGLPQVLESHLLLKKDKK-----SKEVRRQAV--EKDYKIVMLVGD 201 (274)
T ss_pred hHHHHHHcCcccccccceEEeeCCC-----cHHHHHHHH--hhccceeeEecC
Confidence 9999999998843 344443211 243333344 236667777776
No 128
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.27 E-value=0.055 Score=53.06 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=83.1
Q ss_pred CCeeEEEeeccceecccc-ccC--CCcccchhHHHHHHHHHHCCCeEEEEec-----CCch---hhHH----HHHHHhhC
Q psy4654 376 RTEVVVFSVDGSFTASVS-VTG--RDPKVRAGAVDIVRHWQELGYLIIYITG-----RPDM---QQGR----VLSWLSQH 440 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~-~~g--~D~~~~~GA~elv~~l~~~GY~IIYLTa-----Rp~~---~~~~----T~~WL~qh 440 (559)
..|+|.+|-||||-.-.. -+. .|+...+|+++.+.++++.||.++.+|- |... .-+. ...-|++.
T Consensus 4 ~~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~ 83 (181)
T COG0241 4 DQKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ 83 (181)
T ss_pred CCcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc
Confidence 478999999999976543 221 2456789999999999999999999995 3321 1122 23344567
Q ss_pred CCCCceeEecCCC------CCChhhHHHHHHHHHhhc--cCCcEEEEeCC-ccchhHHHhcCCCCCcE
Q psy4654 441 NFPHGLVSFADGL------SPGFLGHKASYLKSLIQD--HGVVIHAAYGS-NKDVSVYTSVGLKPRSI 499 (559)
Q Consensus 441 glP~G~L~lr~g~------~~dp~~~K~~~L~~L~~~--~~~~i~aafGN-~~DV~aYr~vGI~~~~I 499 (559)
|+-.+.++.+... -++| |..++.+.... +++..-...|+ .+|+.+-.++|+.+-+.
T Consensus 84 gv~id~i~~Cph~p~~~c~cRKP---~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~ 148 (181)
T COG0241 84 GVKIDGILYCPHHPEDNCDCRKP---KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLV 148 (181)
T ss_pred CCccceEEECCCCCCCCCcccCC---ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEE
Confidence 8877777776432 2334 66666655442 45556666788 69999999999994443
No 129
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.23 E-value=0.0097 Score=59.16 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=58.8
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
++.+|+.++++.|+++|..+...|+.+. ..+...|...|+. ++.+..++. ..++|+.|= .+++.| ...-
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~---~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL-~Aa~~L--gv~P 159 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPR---RAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYL-LAAERL--GVDP 159 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChH---HHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHH-HHHHHc--CCCh
Confidence 4789999999999999977777776543 3455567776653 333333321 256665542 334443 1122
Q ss_pred cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
.=+.+++| ..-|.+-+++|..+
T Consensus 160 ~~CvviEDs~~Gi~Aa~aAGm~v 182 (221)
T COG0637 160 EECVVVEDSPAGIQAAKAAGMRV 182 (221)
T ss_pred HHeEEEecchhHHHHHHHCCCEE
Confidence 23578888 68999999999865
No 130
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.22 E-value=0.0086 Score=62.86 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=45.2
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHC----CCeEEEEecCCchhhHHHHHHH-hhCCCC
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQEL----GYLIIYITGRPDMQQGRVLSWL-SQHNFP 443 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~----GY~IIYLTaRp~~~~~~T~~WL-~qhglP 443 (559)
+|+||+||||.++. .+.+|+.+.++.+..+ |..++++|--.-.-.+...+.| ++.|++
T Consensus 2 ~~ifD~DGvL~~g~-------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 2 GFAFDIDGVLFRGK-------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred EEEEeCcCceECCc-------cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 58999999998763 3689999999999998 9999999976655544445555 556654
No 131
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.07 E-value=0.013 Score=59.98 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=55.4
Q ss_pred CCeeEEEeeccceeccccccCC--------------------------------------CcccchhHHHHHHHHHHCCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGR--------------------------------------DPKVRAGAVDIVRHWQELGY 417 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~--------------------------------------D~~~~~GA~elv~~l~~~GY 417 (559)
..-.||||||=||..+...+|. --.+.+.+.++++.|+++|.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 5568999999999776521111 11257788999999999999
Q ss_pred eEEEEecCCchhhHHHHHHHhhCCCCC
Q psy4654 418 LIIYITGRPDMQQGRVLSWLSQHNFPH 444 (559)
Q Consensus 418 ~IIYLTaRp~~~~~~T~~WL~qhglP~ 444 (559)
.++=+|+|+..++..|.+-|.+.|+.+
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~f 125 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDF 125 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCc
Confidence 999999999999999999999876543
No 132
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.07 E-value=0.0074 Score=60.45 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=39.9
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhH
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQG 431 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~ 431 (559)
.|++|+||||.+++. + |-..-+...+++++++++|-.++++|||+.....
T Consensus 3 li~tDlDGTLl~~~~--~-~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~ 52 (249)
T TIGR01485 3 LLVSDLDNTLVDHTD--G-DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYK 52 (249)
T ss_pred EEEEcCCCcCcCCCC--C-ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHH
Confidence 688999999998542 1 2235677899999999999999999999975443
No 133
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.05 E-value=0.038 Score=57.89 Aligned_cols=110 Identities=8% Similarity=0.095 Sum_probs=68.2
Q ss_pred CCeeEEEeeccceecccc----ccCCC-cccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhh----CCCCCce
Q psy4654 376 RTEVVVFSVDGSFTASVS----VTGRD-PKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQ----HNFPHGL 446 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~----~~g~D-~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~q----hglP~G~ 446 (559)
..||||+|+|+||...+. ..|-. ..+++|+.++++.++++|+.+.++|.-+. +.+..-|++ .+++...
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~---~~a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDE---DDAKKVFERRKDFILQAEDF 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCH---HHHHHHHHhCccccCcHHHe
Confidence 469999999999987641 12111 12589999999999999999999998766 345556666 3444322
Q ss_pred eEecCCCCCChhhHHHHHHHHHhhc--cCCcEEEEeCC-ccchhHHHhcC
Q psy4654 447 VSFADGLSPGFLGHKASYLKSLIQD--HGVVIHAAYGS-NKDVSVYTSVG 493 (559)
Q Consensus 447 L~lr~g~~~dp~~~K~~~L~~L~~~--~~~~i~aafGN-~~DV~aYr~vG 493 (559)
.....+.. | |.+.++.++.. .+..=..-+|| ..|+.+-++.+
T Consensus 79 ~~~~~~~~--p---k~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~l 123 (320)
T TIGR01686 79 DARSINWG--P---KSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITL 123 (320)
T ss_pred eEEEEecC--c---hHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHC
Confidence 22222223 3 44444444332 23333445677 67777777644
No 134
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.63 E-value=0.038 Score=55.15 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEecCC---CCCChhhHHHHHHHHHhhccCCcE
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSFADG---LSPGFLGHKASYLKSLIQDHGVVI 476 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~~i 476 (559)
.+|+.++++.|+++ |.+.++|.-+.. ++..|+. ++.++..+. ..++|+.|... ++.+ .+...=
T Consensus 115 ~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a-~~~~--~~~~~~ 182 (238)
T PRK10748 115 PQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLA-AEKL--NVPIGE 182 (238)
T ss_pred CccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHH-HHHc--CCChhH
Confidence 36888888899764 888888885543 2445553 344444432 23455454432 2333 111122
Q ss_pred EEEeCC-c-cchhHHHhcCCCC
Q psy4654 477 HAAYGS-N-KDVSVYTSVGLKP 496 (559)
Q Consensus 477 ~aafGN-~-~DV~aYr~vGI~~ 496 (559)
....|| . .||.+-+++|+..
T Consensus 183 ~~~VGD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 183 ILHVGDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred EEEEcCCcHHHHHHHHHCCCeE
Confidence 566777 3 7999999999975
No 135
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=95.57 E-value=0.0088 Score=57.85 Aligned_cols=117 Identities=15% Similarity=0.267 Sum_probs=61.4
Q ss_pred CCeeEEEeeccceeccc--------------c-----ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHH
Q psy4654 376 RTEVVVFSVDGSFTASV--------------S-----VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSW 436 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd--------------~-----~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~W 436 (559)
.||.||||+|+||-.-- . ..|..-...++|.++++.++++|.+|.+-|-=+.- +..++-
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P--~~A~~~ 79 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP--DWAREL 79 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H--HHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh--HHHHHH
Confidence 47999999999995532 1 24555667899999999999999999988632111 455666
Q ss_pred HhhCCCC--Cce-eEecCC-----CCCChhhHHHHHHHHHhhccCCcE--EEEeCC-ccchhHHHhcCCCCC
Q psy4654 437 LSQHNFP--HGL-VSFADG-----LSPGFLGHKASYLKSLIQDHGVVI--HAAYGS-NKDVSVYTSVGLKPR 497 (559)
Q Consensus 437 L~qhglP--~G~-L~lr~g-----~~~dp~~~K~~~L~~L~~~~~~~i--~aafGN-~~DV~aYr~vGI~~~ 497 (559)
|+.-+++ .+. +.+.+. +-+ .-|..-++.|.+..|+++ ..=||| ...+..-+.+|+++-
T Consensus 80 L~~l~i~~~~~~~~~~~~~F~~~eI~~---gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v 148 (169)
T PF12689_consen 80 LKLLEIDDADGDGVPLIEYFDYLEIYP---GSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCV 148 (169)
T ss_dssp HHHTT-C----------CCECEEEESS---S-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEE
T ss_pred HHhcCCCccccccccchhhcchhheec---CchHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEE
Confidence 6666665 111 111111 111 248888888766555421 223667 455666666888763
No 136
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=95.19 E-value=0.063 Score=51.62 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=70.9
Q ss_pred CCeeEEEeeccceeccccc---cCCCcc---cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEe
Q psy4654 376 RTEVVVFSVDGSFTASVSV---TGRDPK---VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~---~g~D~~---~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~l 449 (559)
..|.+|+|+|||||+..-. -|..-| ++.|. -++.|.+.|-++-++|||.--.- +.=.++-|+++ +++
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~--Gik~l~~~Gi~vAIITGr~s~iv---e~Ra~~LGI~~--~~q 79 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGH--GIKLLLKSGIKVAIITGRDSPIV---EKRAKDLGIKH--LYQ 79 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeeccCcH--HHHHHHHcCCeEEEEeCCCCHHH---HHHHHHcCCce--eee
Confidence 4588999999999997632 122111 23332 36788889999999999975432 22233445543 222
Q ss_pred cCCCCCChhhHHHHHHHHHhhccCC--cEEEEeCC-ccchhHHHhcCCCCC
Q psy4654 450 ADGLSPGFLGHKASYLKSLIQDHGV--VIHAAYGS-NKDVSVYTSVGLKPR 497 (559)
Q Consensus 450 r~g~~~dp~~~K~~~L~~L~~~~~~--~i~aafGN-~~DV~aYr~vGI~~~ 497 (559)
. . ..|..++.+|....++ .=.+-.|| -.|.-+..++|++-.
T Consensus 80 G--~-----~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a 123 (170)
T COG1778 80 G--I-----SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVA 123 (170)
T ss_pred c--h-----HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCccc
Confidence 2 2 3699999988764333 33455677 689999999999853
No 137
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=95.13 E-value=0.04 Score=64.04 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=45.7
Q ss_pred CCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHC-CCeEEEEecCCchhhHHHHHHHhh
Q psy4654 375 PRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQEL-GYLIIYITGRPDMQQGRVLSWLSQ 439 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~-GY~IIYLTaRp~~~~~~T~~WL~q 439 (559)
...+.++||+||||+..+..- .+..+.+.+.+.++++.+. |..++++|||+.. ..+.|+..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~-~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~---~l~~~~~~ 551 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDP-ELAVPDKELRDLLRRLAADPNTDVAIISGRDRD---TLERWFGD 551 (726)
T ss_pred ccceEEEEecCccccCCCCCc-ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHH---HHHHHhCC
Confidence 356899999999999764221 1223678899999999994 9999999999844 33567654
No 138
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=95.06 E-value=0.037 Score=50.38 Aligned_cols=49 Identities=18% Similarity=0.524 Sum_probs=38.3
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
|.|.++....+++|+.+++-+||.||||.=.++ ...+..|.|.+.|-+.
T Consensus 19 v~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~-~~~~~~G~Y~l~F~t~ 67 (113)
T cd05469 19 VAIKVFRKTADGSWEIFATGKTNEDGELHGLIT-EEEFXAGVYRVEFDTK 67 (113)
T ss_pred CEEEEEEecCCCceEEEEEEEECCCCCccCccc-cccccceEEEEEEehH
Confidence 556666653346899999999999999965455 4468899999999874
No 139
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=94.96 E-value=0.017 Score=52.46 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=39.4
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
|.|-++.....++|+.+.+-+||.||||.-.++....+..|.|.++|-|.
T Consensus 19 v~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 19 VPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp -EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHH
T ss_pred CEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHH
Confidence 55555554347899999999999999997666667789999999999984
No 140
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=94.65 E-value=0.22 Score=56.34 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSP 455 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~ 455 (559)
+..+|.++.||++..-- .-.| .+++|+.++++.++++|+++..+||.+.. .++..+++.|++ ++.+ .
T Consensus 384 g~~~~~~~~~~~~~g~~--~~~d-~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~---~a~~ia~~lgi~----~~~~-~-- 450 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVF--ALED-QLRPEAKEVIQALKRRGIEPVMLTGDNRK---TAKAVAKELGIN----VRAE-V-- 450 (562)
T ss_pred CCEEEEEEECCEEEEEE--Eecc-cccHHHHHHHHHHHHcCCeEEEEcCCCHH---HHHHHHHHcCCc----EEcc-C--
Confidence 45667788899876432 2245 48999999999999999999999998764 445566777885 3332 2
Q ss_pred ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 456 GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 456 dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.| ..|.+.++.+.. ...-.+.+|| .+|+.+.+++|+.
T Consensus 451 ~p-~~K~~~v~~l~~--~~~~v~~VGDg~nD~~al~~A~vg 488 (562)
T TIGR01511 451 LP-DDKAALIKELQE--KGRVVAMVGDGINDAPALAQADVG 488 (562)
T ss_pred Ch-HHHHHHHHHHHH--cCCEEEEEeCCCccHHHHhhCCEE
Confidence 23 468888998854 3356788999 7999999999974
No 141
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=94.56 E-value=0.058 Score=48.96 Aligned_cols=49 Identities=29% Similarity=0.516 Sum_probs=38.5
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
|.|-++... +++|+.+++-+||.||||.-.++....+..|.|.+.|-+.
T Consensus 19 v~V~L~~~~-~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g 67 (112)
T TIGR02962 19 VPVTLYRLD-GSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTG 67 (112)
T ss_pred CEEEEEEec-CCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhh
Confidence 445555532 3469999999999999998666666678999999999874
No 142
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=94.55 E-value=0.11 Score=49.39 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=62.3
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhHH--HHHHHHHhhccCCcEE
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHK--ASYLKSLIQDHGVVIH 477 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K--~~~L~~L~~~~~~~i~ 477 (559)
++++++.++++.|++.|+++..+||...... ....++.||+...++-+.. ..| ..| ..+++.|. .....+
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a---~~~~~~lgi~~~~v~a~~~--~kP-~~k~~~~~i~~l~--~~~~~v 198 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTA---SAIAKQLGIFDSIVFARVI--GKP-EPKIFLRIIKELQ--VKPGEV 198 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHH---HHHHHHTTSCSEEEEESHE--TTT-HHHHHHHHHHHHT--CTGGGE
T ss_pred cchhhhhhhhhhhhccCcceeeeeccccccc---ccccccccccccccccccc--ccc-cchhHHHHHHHHh--cCCCEE
Confidence 4899999999999999999999998765444 4445567885443433211 244 457 78888873 233368
Q ss_pred EEeCC-ccchhHHHhcC
Q psy4654 478 AAYGS-NKDVSVYTSVG 493 (559)
Q Consensus 478 aafGN-~~DV~aYr~vG 493 (559)
+..|| .+|+.|.+++|
T Consensus 199 ~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 199 AMVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEEESSGGHHHHHHHSS
T ss_pred EEEccCHHHHHHHHhCc
Confidence 88999 79999999876
No 143
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=94.54 E-value=0.034 Score=55.06 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=32.9
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhh
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQ 430 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~ 430 (559)
+|++|+||||.+++..+ . ...++++ .+++|..++++|||+....
T Consensus 1 li~~DlDgTLl~~~~~~------~-~~~~~~~-~~~~gi~~viaTGR~~~~v 44 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGL------A-SFVELLR-GSGDAVGFGIATGRSVESA 44 (236)
T ss_pred CeEEeccccccCCHHHH------H-HHHHHHH-hcCCCceEEEEeCCCHHHH
Confidence 47899999999754322 1 2336777 5899999999999997544
No 144
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=94.44 E-value=0.074 Score=53.40 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=36.5
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCc
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPD 427 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~ 427 (559)
...++||+||||+.....-. ...+.+++.++++.|.+... .++++|||+.
T Consensus 3 ~~~l~lD~DGTL~~~~~~p~-~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~ 53 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIVPDPD-AAVVSDRLLTILQKLAARPHNAIWIISGRKF 53 (244)
T ss_pred cEEEEEecCccccCCcCCCc-ccCCCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence 46789999999997532111 12357889999999988755 4679999964
No 145
>smart00095 TR_THY Transthyretin.
Probab=94.30 E-value=0.068 Score=49.24 Aligned_cols=48 Identities=27% Similarity=0.538 Sum_probs=37.6
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEE
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVV 359 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV 359 (559)
|.|.++.....+.|+.+++-+||.||||.- +.....+..|.|.++|-+
T Consensus 22 v~V~L~~~~~~~~w~~la~~~Tn~DGR~~~-ll~~~~~~~G~Y~l~F~t 69 (121)
T smart00095 22 VAVKVFKKTEEGTWEPFASGKTNESGEIHE-LTTDEKFVEGLYKVEFDT 69 (121)
T ss_pred CEEEEEEeCCCCceEEEEEEecCCCccccC-ccCcccccceEEEEEEeh
Confidence 556666643257899999999999999964 444556889999999987
No 146
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=94.23 E-value=0.081 Score=48.08 Aligned_cols=49 Identities=31% Similarity=0.514 Sum_probs=39.4
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
|.|-++... .++|+.+++-+||.|||+.-.++....+..|.|.+.|-+.
T Consensus 19 v~V~L~~~~-~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 67 (112)
T cd05822 19 VAVTLYRLD-GNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTG 67 (112)
T ss_pred CEEEEEEec-CCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhh
Confidence 555555543 3459999999999999998777765679999999999885
No 147
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=94.16 E-value=0.078 Score=48.85 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=37.5
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
|.|.++.....++|+.+++-+||.||||.- +.....+..|.|.+.|-+-
T Consensus 25 V~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~-ll~~~~~~~G~Y~l~F~tg 73 (121)
T cd05821 25 VAVKVFKKTADGSWEPFASGKTTETGEIHG-LTTDEQFTEGVYKVEFDTK 73 (121)
T ss_pred CEEEEEEecCCCceEEEEEEEECCCCCCCC-ccCccccCCeeEEEEEehh
Confidence 566666543257899999999999999964 4334458899999999874
No 148
>PLN03017 trehalose-phosphatase
Probab=94.15 E-value=0.064 Score=57.87 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=40.9
Q ss_pred eCCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHH
Q psy4654 373 VPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGR 432 (559)
Q Consensus 373 ~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~ 432 (559)
.....-+|++|+||||+.-... .....+.+...+.+++++ +|+.+.++|||+....+.
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~-p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~ 164 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDD-PDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYN 164 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCC-cccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHH
Confidence 3445667788999999932210 001135678899999998 789999999999765443
No 149
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=93.98 E-value=0.086 Score=48.28 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=35.6
Q ss_pred CcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEE
Q psy4654 322 GEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVV 359 (559)
Q Consensus 322 g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV 359 (559)
++|+.+.|.+||.||||...+-+.-.+..|.|.++|-+
T Consensus 37 ~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~ 74 (124)
T COG2351 37 NQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHT 74 (124)
T ss_pred CcceeeeEEEecCCCcccccccCccccccceEEEEEEc
Confidence 38999999999999999988888889999999999987
No 150
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=93.90 E-value=0.16 Score=48.25 Aligned_cols=77 Identities=9% Similarity=0.029 Sum_probs=57.6
Q ss_pred CCCCeeEEEeeccceeccccc--cCC---------------------------CcccchhHHHHHHHHHHCCCeEEEEec
Q psy4654 374 PPRTEVVVFSVDGSFTASVSV--TGR---------------------------DPKVRAGAVDIVRHWQELGYLIIYITG 424 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~~--~g~---------------------------D~~~~~GA~elv~~l~~~GY~IIYLTa 424 (559)
..+...+|+|+|.||..|... ... --+++||+.+.+..+++ +|++..+|+
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~-~yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASK-LYEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHh-hcEEEEEeC
Confidence 446678999999999887632 110 02358999999999985 599999999
Q ss_pred CCchhhHHHHHHHhhCCCCC-ceeEecC
Q psy4654 425 RPDMQQGRVLSWLSQHNFPH-GLVSFAD 451 (559)
Q Consensus 425 Rp~~~~~~T~~WL~qhglP~-G~L~lr~ 451 (559)
-+...++...++|.-++-.+ +.++.++
T Consensus 82 ~~~~yA~~vl~~ldp~~~~F~~ri~~rd 109 (156)
T TIGR02250 82 GTRAYAQAIAKLIDPDGKYFGDRIISRD 109 (156)
T ss_pred CcHHHHHHHHHHhCcCCCeeccEEEEec
Confidence 99999999999998665334 3444443
No 151
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=93.31 E-value=0.069 Score=54.13 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=34.8
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH 444 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~ 444 (559)
+..+++|+||||++.+ .....-..+++......+-.++|+|||...+.... +.+.++|.
T Consensus 2 ~~ll~sDlD~Tl~~~~------~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~---~~~~~l~~ 60 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD------DEALARLEELLEQQARPEILFVYVTGRSLESVLRL---LREYNLPQ 60 (247)
T ss_dssp SEEEEEETBTTTBHCH------HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHH---HHHCT-EE
T ss_pred CEEEEEECCCCCcCCC------HHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHH---HHhCCCCC
Confidence 4679999999999221 11122223333333367778999999998776544 45667764
No 152
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=93.07 E-value=0.16 Score=52.67 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=45.7
Q ss_pred eeCCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchhhHHHHHHHh
Q psy4654 372 VVPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQQGRVLSWLS 438 (559)
Q Consensus 372 v~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~~~~T~~WL~ 438 (559)
+.....+.+++|+||||+....--... .+-++..+++++|..+.- .+.++|||+.. ....|+.
T Consensus 13 ~~~a~~~~~~lDyDGTl~~i~~~p~~a-~~~~~l~~lL~~Las~~~~~v~iiSGR~~~---~l~~~~~ 76 (266)
T COG1877 13 YLNARKRLLFLDYDGTLTEIVPHPEAA-VPDDRLLSLLQDLASDPRNVVAIISGRSLA---ELERLFG 76 (266)
T ss_pred cccccceEEEEeccccccccccCcccc-CCCHHHHHHHHHHHhcCCCeEEEEeCCCHH---HHHHhcC
Confidence 445678999999999999875432222 367789999999998844 37789999853 3345554
No 153
>KOG2914|consensus
Probab=93.06 E-value=0.58 Score=47.33 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC--CCCCceeEecCC-----CCCChhhHHHHHHHHHhhccC
Q psy4654 401 VRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH--NFPHGLVSFADG-----LSPGFLGHKASYLKSLIQDHG 473 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh--glP~G~L~lr~g-----~~~dp~~~K~~~L~~L~~~~~ 473 (559)
..+||.+++++++.+|-.+-.+|+++....+.-..|+... .|....+ .++ ..++|+.|= .+++.+ ...
T Consensus 93 ~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~--~d~~~v~~gKP~Pdi~l-~A~~~l--~~~ 167 (222)
T KOG2914|consen 93 LMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVL--GDDPEVKNGKPDPDIYL-KAAKRL--GVP 167 (222)
T ss_pred cCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCee--cCCccccCCCCCchHHH-HHHHhc--CCC
Confidence 6789999999999999999999999998888888888742 2333222 211 145665543 233444 222
Q ss_pred C-cEEEEeCC-ccchhHHHhcCCCC
Q psy4654 474 V-VIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 474 ~-~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
- .-...|+| +.-+.+-.++|..+
T Consensus 168 ~~~k~lVfeds~~Gv~aa~aagm~v 192 (222)
T KOG2914|consen 168 PPSKCLVFEDSPVGVQAAKAAGMQV 192 (222)
T ss_pred CccceEEECCCHHHHHHHHhcCCeE
Confidence 2 46788999 68999999999754
No 154
>KOG1615|consensus
Probab=92.90 E-value=0.48 Score=47.30 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=80.1
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCce-----eEec-CC-----CCCChh---hH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGL-----VSFA-DG-----LSPGFL---GH 460 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~-----L~lr-~g-----~~~dp~---~~ 460 (559)
.++-|..-+|+.++++.|+++|-+++.+||==..+.+-+.+- -|||+.. |.+. .| -...|. .-
T Consensus 83 ~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~---Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsgg 159 (227)
T KOG1615|consen 83 IKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQ---LGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGG 159 (227)
T ss_pred hcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHH---hCCcHhhhhhheeeeccCCcccccccCCccccCCc
Confidence 555677889999999999999999999999655555544443 3666533 2221 11 011111 25
Q ss_pred HHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCccccccceecchhHHHHHHHH
Q psy4654 461 KASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKKHQSQATVLSDGYAAHLTAL 527 (559)
Q Consensus 461 K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~~~~~~~~~~~~Y~~hL~~l 527 (559)
|.+.++.|.......-....|| ++|+.|.. |..-|| +..|-.+..++......|..-+-.|
T Consensus 160 Ka~~i~~lrk~~~~~~~~mvGDGatDlea~~-----pa~afi-~~~g~~~r~~vk~nak~~~~~f~~L 221 (227)
T KOG1615|consen 160 KAEVIALLRKNYNYKTIVMVGDGATDLEAMP-----PADAFI-GFGGNVIREGVKANAKWYVTDFYVL 221 (227)
T ss_pred cHHHHHHHHhCCChheeEEecCCccccccCC-----chhhhh-ccCCceEcHhhHhccHHHHHHHHHH
Confidence 8888998876556677888999 89987754 334444 5545455555555566666555554
No 155
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=92.81 E-value=0.61 Score=52.64 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=73.5
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCC-CeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCC
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELG-YLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPG 456 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~G-Y~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~d 456 (559)
.++.+..||++...- ...|+ +++|+.++++.++++| +++..+||.+... ++.-+++.|+.. ++. + . .
T Consensus 365 ~~~~v~~~~~~~g~i--~~~d~-~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~---a~~i~~~lgi~~--~f~-~-~--~ 432 (556)
T TIGR01525 365 TVVFVAVDGELLGVI--ALRDQ-LRPEAKEAIAALKRAGGIKLVMLTGDNRSA---AEAVAAELGIDE--VHA-E-L--L 432 (556)
T ss_pred EEEEEEECCEEEEEE--Eeccc-chHhHHHHHHHHHHcCCCeEEEEeCCCHHH---HHHHHHHhCCCe--eec-c-C--C
Confidence 455666777665442 33454 8999999999999999 9999999987653 444566677732 222 1 1 2
Q ss_pred hhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 457 FLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 457 p~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
| ..|.+.++.+.. .-.-.+..|| .+|+.+.+++|+
T Consensus 433 p-~~K~~~v~~l~~--~~~~v~~vGDg~nD~~al~~A~v 468 (556)
T TIGR01525 433 P-EDKLAIVKELQE--EGGVVAMVGDGINDAPALAAADV 468 (556)
T ss_pred H-HHHHHHHHHHHH--cCCEEEEEECChhHHHHHhhCCE
Confidence 3 468889998853 2247788999 799999999995
No 156
>PRK10671 copA copper exporting ATPase; Provisional
Probab=92.73 E-value=0.6 Score=55.34 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=74.9
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSP 455 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~ 455 (559)
+..+|.+-+||++... +.-.|+ +++|+.++++.++++|++++.+||.+.... +..+++.|++. ++.+ .
T Consensus 629 g~~~v~va~~~~~~g~--~~l~d~-~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a---~~ia~~lgi~~---~~~~-~-- 696 (834)
T PRK10671 629 GATPVLLAVDGKAAAL--LAIRDP-LRSDSVAALQRLHKAGYRLVMLTGDNPTTA---NAIAKEAGIDE---VIAG-V-- 696 (834)
T ss_pred CCeEEEEEECCEEEEE--EEccCc-chhhHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHHcCCCE---EEeC-C--
Confidence 4455666778776532 223564 899999999999999999999999776543 34556677753 2222 2
Q ss_pred ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 456 GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 456 dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
.| ..|.+.++.+.. .-.-.+.+|| .+|+.+.+++|+
T Consensus 697 ~p-~~K~~~i~~l~~--~~~~v~~vGDg~nD~~al~~Agv 733 (834)
T PRK10671 697 LP-DGKAEAIKRLQS--QGRQVAMVGDGINDAPALAQADV 733 (834)
T ss_pred CH-HHHHHHHHHHhh--cCCEEEEEeCCHHHHHHHHhCCe
Confidence 24 359999999853 3346889999 799999999998
No 157
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=92.64 E-value=0.087 Score=52.48 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=29.8
Q ss_pred EEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchh
Q psy4654 381 VFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQ 429 (559)
Q Consensus 381 IfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~ 429 (559)
.+|+||||+..... ..+..+.+++.+++++|.+... .+.++|||+...
T Consensus 1 ~lDyDGTL~p~~~~-p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD-PDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp EEE-TTTSS---S--GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CcccCCccCCCCCC-ccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 48999999987654 2334578999999999998755 588999999766
No 158
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=92.56 E-value=0.21 Score=46.94 Aligned_cols=49 Identities=31% Similarity=0.500 Sum_probs=37.5
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEcC
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRG 361 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~g 361 (559)
|.|-+... ..++|+.+.+.+||.|||+..-++ +..+..|.|.+.|-+.+
T Consensus 45 V~V~L~~~-~~~~w~~l~~~~Td~dGR~~~l~~-~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 45 VTVTLEKK-ADNGWLQLNTAKTDKDGRIKALWP-EQTATTGDYRVVFKTGD 93 (137)
T ss_pred CEEEEEEc-cCCceEEEEEEEECCCCCCccccC-cccCCCeeEEEEEEcch
Confidence 45555443 246799999999999999987444 33578999999998764
No 159
>PLN02151 trehalose-phosphatase
Probab=92.54 E-value=0.12 Score=55.44 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=42.0
Q ss_pred EEeeCCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhh
Q psy4654 370 LAVVPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQ 430 (559)
Q Consensus 370 i~v~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~ 430 (559)
+.+.....-++++|+||||+.-..- -.+..+.++..+.++.+. +++.+.++|||+...-
T Consensus 91 ~~~~~~~~~ll~lDyDGTL~PIv~~-P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l 149 (354)
T PLN02151 91 LHKSEGKQIVMFLDYDGTLSPIVDD-PDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCREKV 149 (354)
T ss_pred HHhhcCCceEEEEecCccCCCCCCC-cccccCCHHHHHHHHHHh-cCCCEEEEECCCHHHH
Confidence 3444456678888999999954321 111246788999999998 5689999999986433
No 160
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=92.39 E-value=0.17 Score=60.10 Aligned_cols=56 Identities=16% Similarity=0.468 Sum_probs=43.2
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHH-HHCCCeEEEEecCCchhhHHHHHHH
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHW-QELGYLIIYITGRPDMQQGRVLSWL 437 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l-~~~GY~IIYLTaRp~~~~~~T~~WL 437 (559)
..+++++|+||||+..... +..+-++..+++++| ++.|..++++|||+... ..+||
T Consensus 595 ~~rlI~LDyDGTLlp~~~~---~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~---L~~~f 651 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI---DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKT---LADWF 651 (854)
T ss_pred cCeEEEEecCCcccCCccc---cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHH---HHHHh
Confidence 5689999999999976543 223567899999998 77899999999997533 34555
No 161
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=92.35 E-value=0.9 Score=44.28 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=52.4
Q ss_pred eCCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC
Q psy4654 373 VPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH 444 (559)
Q Consensus 373 ~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~ 444 (559)
-..|-++||+|+|-||..=+ ++..-|.+.+-+..++++|-.++.+|- .-+.+...|+.+-|+|+
T Consensus 24 ~~~Gikgvi~DlDNTLv~wd-----~~~~tpe~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l~v~f 87 (175)
T COG2179 24 KAHGIKGVILDLDNTLVPWD-----NPDATPELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKLGVPF 87 (175)
T ss_pred HHcCCcEEEEeccCceeccc-----CCCCCHHHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhcCCce
Confidence 34578999999999997544 344567789999999999999999975 66678888999888886
No 162
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=92.27 E-value=0.59 Score=52.60 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=72.7
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCCh
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGF 457 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp 457 (559)
++.+-.||++.... ...| ++++|+.++++.++++|+ ++..+||.+. ..++..+++.|++.- +. +.. |
T Consensus 344 ~~~v~~~~~~~g~i--~~~d-~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~---~~a~~i~~~lgi~~~---f~-~~~--p 411 (536)
T TIGR01512 344 IVHVARDGTYLGYI--LLSD-EPRPDAAEAIAELKALGIEKVVMLTGDRR---AVAERVARELGIDEV---HA-ELL--P 411 (536)
T ss_pred EEEEEECCEEEEEE--EEec-cchHHHHHHHHHHHHcCCCcEEEEcCCCH---HHHHHHHHHcCChhh---hh-ccC--c
Confidence 34445666665432 3445 489999999999999999 9999999765 445566777777431 11 112 2
Q ss_pred hhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 458 LGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 458 ~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
..|...++.+.. .....+..|| .+|+.+.+++|+
T Consensus 412 -~~K~~~i~~l~~--~~~~v~~vGDg~nD~~al~~A~v 446 (536)
T TIGR01512 412 -EDKLEIVKELRE--KYGPVAMVGDGINDAPALAAADV 446 (536)
T ss_pred -HHHHHHHHHHHh--cCCEEEEEeCCHHHHHHHHhCCE
Confidence 358889999853 3357889999 799999999996
No 163
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.26 E-value=0.96 Score=43.75 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=59.2
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeEecCC---CCCChhhHHHHHHHHHhhccCC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVSFADG---LSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~lr~g---~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
+..+++.+.++.++.+ |++..+|- +.......-|.+.|+ .++.++.++. ..++|..|+..+ +.+ ...-
T Consensus 99 ~~~~~~~~~L~~l~~~-~~l~ilTN---g~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~-~~~--g~~p 171 (229)
T COG1011 99 PDYPEALEALKELGKK-YKLGILTN---GARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYAL-EKL--GVPP 171 (229)
T ss_pred ccChhHHHHHHHHHhh-ccEEEEeC---CChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHH-HHc--CCCc
Confidence 4678888999999888 88999985 233445556666664 4666777653 245666665433 333 1111
Q ss_pred cEEEEeCC--ccchhHHHhcCCCCC
Q psy4654 475 VIHAAYGS--NKDVSVYTSVGLKPR 497 (559)
Q Consensus 475 ~i~aafGN--~~DV~aYr~vGI~~~ 497 (559)
.=..-.|| .+||..-+++|+..-
T Consensus 172 ~~~l~VgD~~~~di~gA~~~G~~~v 196 (229)
T COG1011 172 EEALFVGDSLENDILGARALGMKTV 196 (229)
T ss_pred ceEEEECCChhhhhHHHHhcCcEEE
Confidence 23566777 478899999999764
No 164
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=91.81 E-value=0.41 Score=47.46 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=47.9
Q ss_pred CCCeeEEEeeccceecccc--ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHH
Q psy4654 375 PRTEVVVFSVDGSFTASVS--VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWL 437 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~--~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL 437 (559)
.+.|++|.||||||.++.+ .-+.- ..||++.+.++.+.+ .|+|++-||.....++.....|
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~~~~~-~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAETGEE-LMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCcEEEEeCCCceEcccccCCCceE-EeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHh
Confidence 4679999999999998642 22222 469999999999988 5999999998877776666655
No 165
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=91.50 E-value=0.28 Score=49.88 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=36.5
Q ss_pred cchhHHHHHHHH--HHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeEe
Q psy4654 401 VRAGAVDIVRHW--QELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVSF 449 (559)
Q Consensus 401 ~~~GA~elv~~l--~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~l 449 (559)
..+|..++++.+ +..|+.++++| +...--...||+.||+. +..++.
T Consensus 72 ~~pgm~~~l~~l~~~~~~~~~~IiS---DaNs~fI~~iL~~~gl~~~f~~I~T 121 (234)
T PF06888_consen 72 IDPGMKELLRFLAKNQRGFDLIIIS---DANSFFIETILEHHGLRDCFSEIFT 121 (234)
T ss_pred CCccHHHHHHHHHhcCCCceEEEEe---CCcHhHHHHHHHhCCCccccceEEe
Confidence 688999999999 45899999996 56666788999999985 335554
No 166
>PLN02382 probable sucrose-phosphatase
Probab=91.30 E-value=0.27 Score=53.75 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=34.4
Q ss_pred eeEEEeeccceeccccccCCCcccc-hhHHHHHHHHHHCCCeEEEEecCCchhh
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVR-AGAVDIVRHWQELGYLIIYITGRPDMQQ 430 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~-~GA~elv~~l~~~GY~IIYLTaRp~~~~ 430 (559)
-.|++|+||||.++. .|.... .....+++++.++|-.+++.|||+....
T Consensus 10 ~lI~sDLDGTLL~~~----~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~ 59 (413)
T PLN02382 10 LMIVSDLDHTMVDHH----DPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLY 59 (413)
T ss_pred EEEEEcCCCcCcCCC----CccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHH
Confidence 478889999999763 111111 2344555788899999999999995544
No 167
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=91.30 E-value=1.2 Score=51.93 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=71.9
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCCh
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGF 457 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp 457 (559)
.++.+-.|+++.-- +.-+|| +++++.+.++.+++.|.+++.+||.....+... -++-|+.. ++- +-.|
T Consensus 427 r~l~va~~~~~lG~--i~l~D~-~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i---A~~lGI~~--v~a----~~~P 494 (675)
T TIGR01497 427 TPLVVCEDNRIYGV--IYLKDI-VKGGIKERFAQLRKMGIKTIMITGDNRLTAAAI---AAEAGVDD--FIA----EATP 494 (675)
T ss_pred eEEEEEECCEEEEE--EEeccc-chhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH---HHHcCCCE--EEc----CCCH
Confidence 33444445554322 234676 899999999999999999999999865444333 33446642 222 1234
Q ss_pred hhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 458 LGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 458 ~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
..|.+.++.+.+ .-...+..|| .+|+.+.+++++.
T Consensus 495 -edK~~~v~~lq~--~g~~VamvGDG~NDapAL~~AdvG 530 (675)
T TIGR01497 495 -EDKIALIRQEQA--EGKLVAMTGDGTNDAPALAQADVG 530 (675)
T ss_pred -HHHHHHHHHHHH--cCCeEEEECCCcchHHHHHhCCEe
Confidence 579999999954 3347999999 8999999998765
No 168
>COG4996 Predicted phosphatase [General function prediction only]
Probab=90.80 E-value=1.5 Score=41.50 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=66.7
Q ss_pred eEEEeeccceeccccc------------------cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC
Q psy4654 379 VVVFSVDGSFTASVSV------------------TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH 440 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~------------------~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh 440 (559)
+|+||.|||+-+...+ -|..-...+.++++++-.+..||-+--.|=- ..+...+=|+.-
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN---~~~kA~~aLral 78 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN---FEDKAIKALRAL 78 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC---chHHHHHHHHHh
Confidence 6899999999886521 3444346788999999999999955444422 222222223322
Q ss_pred CCC-CceeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeCCccchhHHHhcCCCCCcEEEEcCC
Q psy4654 441 NFP-HGLVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 441 glP-~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
++- +-+.+ ++.+.| +|-.+|..|+. .+.+-|.+-|.|++|.-++..
T Consensus 79 ~~~~yFhy~---ViePhP--~K~~ML~~llr--------------~i~~er~~~ikP~~Ivy~DDR 125 (164)
T COG4996 79 DLLQYFHYI---VIEPHP--YKFLMLSQLLR--------------EINTERNQKIKPSEIVYLDDR 125 (164)
T ss_pred chhhhEEEE---EecCCC--hhHHHHHHHHH--------------HHHHhhccccCcceEEEEecc
Confidence 221 11112 234445 77778888765 577888888999999888764
No 169
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=89.80 E-value=0.62 Score=47.37 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=35.2
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCc
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPD 427 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~ 427 (559)
.+..|-.||||||... |-||. .|..++..+++.||.||++|+...
T Consensus 6 ~~~lIFtDlD~TLl~~----~ye~~---pA~pv~~el~d~G~~Vi~~SSKT~ 50 (274)
T COG3769 6 MPLLIFTDLDGTLLPH----SYEWQ---PAAPVLLELKDAGVPVILCSSKTR 50 (274)
T ss_pred cceEEEEcccCcccCC----CCCCC---ccchHHHHHHHcCCeEEEeccchH
Confidence 3456777999999872 45542 268899999999999999998654
No 170
>PLN02580 trehalose-phosphatase
Probab=89.69 E-value=0.51 Score=51.38 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=38.5
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchh
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQ 429 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~ 429 (559)
..-++.+|.||||+.-..- -.+..+.+++.++++.+.+. +.+.+||||+...
T Consensus 118 k~~~LfLDyDGTLaPIv~~-Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~ 169 (384)
T PLN02580 118 KKIALFLDYDGTLSPIVDD-PDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDK 169 (384)
T ss_pred CCeEEEEecCCccCCCCCC-cccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHH
Confidence 4456777999999975421 11234678899999999887 5799999997543
No 171
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=88.34 E-value=2.7 Score=49.44 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSP 455 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~ 455 (559)
+..+|.+-+||++.-. +.-.|+ +++|+.++++.+++.|++++.+||.+.. .++...++-|+.+ +. .-
T Consensus 547 g~~~v~va~~~~~~g~--i~l~d~-~r~~a~~~i~~L~~~gi~~~llTGd~~~---~a~~ia~~lgi~~---~~----~~ 613 (741)
T PRK11033 547 GKTVVLVLRNDDVLGL--IALQDT-LRADARQAISELKALGIKGVMLTGDNPR---AAAAIAGELGIDF---RA----GL 613 (741)
T ss_pred CCEEEEEEECCEEEEE--EEEecC-CchhHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHcCCCe---ec----CC
Confidence 3455666677766432 234565 8999999999999999999999998654 4455566778752 11 12
Q ss_pred ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 456 GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 456 dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
.| ..|...++.+.+. ..++-.|| .+|+.+.+..+|
T Consensus 614 ~p-~~K~~~v~~l~~~---~~v~mvGDgiNDapAl~~A~v 649 (741)
T PRK11033 614 LP-EDKVKAVTELNQH---APLAMVGDGINDAPAMKAASI 649 (741)
T ss_pred CH-HHHHHHHHHHhcC---CCEEEEECCHHhHHHHHhCCe
Confidence 34 4799999999532 25788899 799999998774
No 172
>KOG2882|consensus
Probab=87.59 E-value=1.1 Score=47.18 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=38.0
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCc
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPD 427 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~ 427 (559)
.-..||||.||.|.. |.+ +.||+.+.++.|++.|-.|+++|--+-
T Consensus 21 ~~DtfifDcDGVlW~-----g~~--~ipGs~e~l~~L~~~gK~i~fvTNNSt 65 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWL-----GEK--PIPGSPEALNLLKSLGKQIIFVTNNST 65 (306)
T ss_pred hcCEEEEcCCcceee-----cCC--CCCChHHHHHHHHHcCCcEEEEeCCCc
Confidence 346799999999984 555 489999999999999999999996543
No 173
>KOG3006|consensus
Probab=86.82 E-value=0.28 Score=45.09 Aligned_cols=49 Identities=29% Similarity=0.507 Sum_probs=41.6
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
|.||++.......|+.+|+..|+.+||+....| ...|-+|.|.+.+.-.
T Consensus 39 VqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~-~~tl~~GtYr~~~dT~ 87 (132)
T KOG3006|consen 39 VQVHLFILANDDTWTPIGSGFTQDNGRVDWVSP-DFTLIPGTYRLVFDTE 87 (132)
T ss_pred eEEEEEEecCCCcccCccccccccCceeecccc-hhhhccceEEEEEecc
Confidence 888888876666899999999999999996665 5679999999987643
No 174
>KOG0207|consensus
Probab=86.69 E-value=2.7 Score=50.03 Aligned_cols=106 Identities=23% Similarity=0.257 Sum_probs=77.6
Q ss_pred CCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCC
Q psy4654 375 PRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLS 454 (559)
Q Consensus 375 ~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~ 454 (559)
.+.-+|.+-+||+|+.--.+ .|+ ++++|..++..|++.|++++.|||-....+..+.+-+- .+.++ .+.
T Consensus 701 ~g~tvv~v~vn~~l~gv~~l--~D~-vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG-----i~~V~-aev-- 769 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVFAL--EDQ-VRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG-----IDNVY-AEV-- 769 (951)
T ss_pred cCceEEEEEECCEEEEEEEe--ccc-cchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC-----cceEE-ecc--
Confidence 36678889999998865332 464 89999999999999999999999999888877754443 22222 111
Q ss_pred CChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHh--cCCC
Q psy4654 455 PGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTS--VGLK 495 (559)
Q Consensus 455 ~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~--vGI~ 495 (559)
.| ..|.+.+++|.. +-...+-.|| .+|.-+..+ +||.
T Consensus 770 -~P-~~K~~~Ik~lq~--~~~~VaMVGDGINDaPALA~AdVGIa 809 (951)
T KOG0207|consen 770 -LP-EQKAEKIKEIQK--NGGPVAMVGDGINDAPALAQADVGIA 809 (951)
T ss_pred -Cc-hhhHHHHHHHHh--cCCcEEEEeCCCCccHHHHhhcccee
Confidence 23 469999999964 3367888999 788777765 5553
No 175
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=86.28 E-value=3.9 Score=49.26 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=63.8
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC-c-e---eEecC------------------
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH-G-L---VSFAD------------------ 451 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~-G-~---L~lr~------------------ 451 (559)
.-.|| +++++.+.++.+++.|.+++.+||.....+.... ++-|+.. + . ..+.+
T Consensus 533 ~~~Dp-lr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia---~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~ 608 (917)
T TIGR01116 533 GMLDP-PRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC---RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSA 608 (917)
T ss_pred eeeCC-CchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcC
Confidence 44575 8999999999999999999999998755444332 2234421 1 0 01110
Q ss_pred -C-CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 452 -G-LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 452 -g-~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
. -+-.| ..|..+++.+.. . -.+++..|| .+|+.|.++++|.
T Consensus 609 ~v~ar~~P-~~K~~iV~~lq~-~-g~~va~iGDG~ND~~alk~AdVG 652 (917)
T TIGR01116 609 VLFSRVEP-SHKSELVELLQE-Q-GEIVAMTGDGVNDAPALKKADIG 652 (917)
T ss_pred eEEEecCH-HHHHHHHHHHHh-c-CCeEEEecCCcchHHHHHhCCee
Confidence 0 02234 578999998843 3 347788999 8999999998883
No 176
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=85.87 E-value=2.3 Score=42.72 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=54.0
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC--CceeE-ecCCCCCChhhHHHHHHHHHhhccCCcE
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP--HGLVS-FADGLSPGFLGHKASYLKSLIQDHGVVI 476 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP--~G~L~-lr~g~~~dp~~~K~~~L~~L~~~~~~~i 476 (559)
.+.+|+.++++.|+++|+++.++|.-+....+....-+...++. .+..+ ...+..++|+.|.. +++.+ ...-.=
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~-i~~~l--gv~p~e 171 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVK-IAGQL--GSPPRE 171 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHH-HHHHh--CcChhH
Confidence 37899999999999999999999987654433222111111221 11111 11223455544433 23333 111111
Q ss_pred EEEeCC-ccchhHHHhcCCCC
Q psy4654 477 HAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 477 ~aafGN-~~DV~aYr~vGI~~ 496 (559)
..-+|| ..|+.+-+++|+..
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEE
Confidence 344566 78999999999965
No 177
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=85.63 E-value=4.1 Score=47.87 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=70.3
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhh-CCCCCceeEecCCCCCCh
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQ-HNFPHGLVSFADGLSPGF 457 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~q-hglP~G~L~lr~g~~~dp 457 (559)
+|.+-+||.+.-- +.-.|+ +++++.+.++.|++.|.+++.|||-....+ +++.+ -|+. .++ .+..+
T Consensus 519 ~v~va~dg~~~g~--i~~~D~-~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A----~~iA~~lGId--~v~--AellP-- 585 (713)
T COG2217 519 VVFVAVDGKLVGV--IALADE-LRPDAKEAIAALKALGIKVVMLTGDNRRTA----EAIAKELGID--EVR--AELLP-- 585 (713)
T ss_pred EEEEEECCEEEEE--EEEeCC-CChhHHHHHHHHHHCCCeEEEEcCCCHHHH----HHHHHHcChH--hhe--ccCCc--
Confidence 6888888855433 234564 899999999999999999999999776544 44443 3552 111 11222
Q ss_pred hhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHh--cCCC
Q psy4654 458 LGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTS--VGLK 495 (559)
Q Consensus 458 ~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~--vGI~ 495 (559)
+.|.+.+++|.. .-..++-.|| .+|.-+..+ +||.
T Consensus 586 -edK~~~V~~l~~--~g~~VamVGDGINDAPALA~AdVGiA 623 (713)
T COG2217 586 -EDKAEIVRELQA--EGRKVAMVGDGINDAPALAAADVGIA 623 (713)
T ss_pred -HHHHHHHHHHHh--cCCEEEEEeCCchhHHHHhhcCeeEe
Confidence 579999999953 3367888999 788877766 5543
No 178
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=85.34 E-value=1.3 Score=42.98 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=39.0
Q ss_pred eeCCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC--eEEEEecCC
Q psy4654 372 VVPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY--LIIYITGRP 426 (559)
Q Consensus 372 v~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY--~IIYLTaRp 426 (559)
+-..|-++||||.|.|||.-. .+ .+.+.+.+-++++++.+- +|+++|--.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~----~~-~i~~~~~~~~~~l~~~~~~~~v~IvSNsa 87 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPY----ED-EIPPEYAEWLNELKKQFGKDRVLIVSNSA 87 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCC----cC-cCCHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 556788999999999999653 22 467778899999998765 488887653
No 179
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=84.76 E-value=4.9 Score=47.39 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=65.6
Q ss_pred ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCce-----e---------------------
Q psy4654 394 VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGL-----V--------------------- 447 (559)
Q Consensus 394 ~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~-----L--------------------- 447 (559)
+.-.|| +++++.+.++.+++.|.+++.+||.....+..+- ++-|+.... +
T Consensus 437 i~l~Dp-~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA---~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 512 (755)
T TIGR01647 437 LPLFDP-PRHDTKETIERARHLGVEVKMVTGDHLAIAKETA---RRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDA 512 (755)
T ss_pred eeccCC-ChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH---HHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhC
Confidence 345676 8999999999999999999999998876554432 234554310 0
Q ss_pred -EecCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 448 -SFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 448 -~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.+. +-.| ..|...++.+.+ .-.+++--|| .+|+-|.+++.|-
T Consensus 513 ~vfA---r~~P-e~K~~iV~~lq~--~G~~VamvGDGvNDapAL~~AdVG 556 (755)
T TIGR01647 513 DGFA---EVFP-EHKYEIVEILQK--RGHLVGMTGDGVNDAPALKKADVG 556 (755)
T ss_pred CEEE---ecCH-HHHHHHHHHHHh--cCCEEEEEcCCcccHHHHHhCCee
Confidence 111 2235 579999999954 3358999999 8999999885443
No 180
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=84.48 E-value=6.5 Score=39.26 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=66.5
Q ss_pred CcccchhHHHHHHH-HHHCCCeEEEEecCCc-hhhHHHHHHHhhCCCCCceeEecCC--CCCChhhHHHHHHHHHhhc-c
Q psy4654 398 DPKVRAGAVDIVRH-WQELGYLIIYITGRPD-MQQGRVLSWLSQHNFPHGLVSFADG--LSPGFLGHKASYLKSLIQD-H 472 (559)
Q Consensus 398 D~~~~~GA~elv~~-l~~~GY~IIYLTaRp~-~~~~~T~~WL~qhglP~G~L~lr~g--~~~dp~~~K~~~L~~L~~~-~ 472 (559)
+|| ...++++++. +++..---|.||||.+ ..++....=|...++.++.+.|... .......||..+|++|+.- .
T Consensus 53 gwW-Ne~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~ 131 (197)
T PF10307_consen 53 GWW-NENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLEFDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK 131 (197)
T ss_pred chh-hHHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCCccEEEeCcccccCccccHHHHHHHHHHHHhcC
Confidence 444 5678888754 4555556689999996 8888888889999999999999864 3445567999999999752 1
Q ss_pred CCcEEEEeCC-ccchhHHHh
Q psy4654 473 GVVIHAAYGS-NKDVSVYTS 491 (559)
Q Consensus 473 ~~~i~aafGN-~~DV~aYr~ 491 (559)
.+.=+.-|+| ...+...+.
T Consensus 132 ~~~eI~IYeDR~~hvk~Fr~ 151 (197)
T PF10307_consen 132 NAEEIRIYEDRPKHVKGFRD 151 (197)
T ss_pred CCCEEEEEcCCHHHHHHHHH
Confidence 2233445666 566655554
No 181
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=84.40 E-value=4.9 Score=48.18 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=66.4
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC-c------------------------eeEe
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH-G------------------------LVSF 449 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~-G------------------------~L~l 449 (559)
.-.|| +++|+.++++.+++.|.+++.+||.....+.... ++-|+.. + .++-
T Consensus 524 ~l~Dp-~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia---~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfa 599 (884)
T TIGR01522 524 GINDP-PRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA---RRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFA 599 (884)
T ss_pred eccCc-chhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH---HHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEE
Confidence 34575 8999999999999999999999999876665553 3335431 1 1221
Q ss_pred cCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 450 ADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 450 r~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
+..| ..|...++.+.+ . -..++..|| .+|+.|.++++|-
T Consensus 600 ----r~~P-~~K~~iv~~lq~-~-g~~v~mvGDGvND~pAl~~AdVG 639 (884)
T TIGR01522 600 ----RASP-EHKMKIVKALQK-R-GDVVAMTGDGVNDAPALKLADIG 639 (884)
T ss_pred ----ECCH-HHHHHHHHHHHH-C-CCEEEEECCCcccHHHHHhCCee
Confidence 2334 679999999854 2 357899999 8999999998863
No 182
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.98 E-value=1.7 Score=52.29 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=42.4
Q ss_pred CCeeEEEeeccceeccccccC--------CCcccchhHHHHHHHHHHC-CCeEEEEecCCchhhHHHHHHH
Q psy4654 376 RTEVVVFSVDGSFTASVSVTG--------RDPKVRAGAVDIVRHWQEL-GYLIIYITGRPDMQQGRVLSWL 437 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g--------~D~~~~~GA~elv~~l~~~-GY~IIYLTaRp~~~~~~T~~WL 437 (559)
...++++|.||||+.....-. .+..+.+++.++++.|.+. +..+.++|||+... ..+||
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~---Le~~f 657 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV---LDENF 657 (934)
T ss_pred cceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH---HHHHh
Confidence 346888999999997542211 1445788999999999875 56899999997543 34455
No 183
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=83.90 E-value=5.6 Score=48.37 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=63.2
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC-CCc------------------------eeEe
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF-PHG------------------------LVSF 449 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl-P~G------------------------~L~l 449 (559)
.-.|| +++++.+.++.++++|.+++.+|||+...+....+ +-|+ +.+ .+.+
T Consensus 564 ~i~Dp-lr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~---~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi 639 (997)
T TIGR01106 564 SMIDP-PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAK---GVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVV 639 (997)
T ss_pred eccCC-ChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH---HcCCCCCCccchhhhhhhccccccccccccccceEE
Confidence 44575 89999999999999999999999999766543322 2222 100 0111
Q ss_pred cC---------------------C-CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 450 AD---------------------G-LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 450 r~---------------------g-~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.+ + -+-.| ..|...++.+.+ .|. +++..|| .+|+.|.+.+.|-
T Consensus 640 ~G~~l~~l~~~el~~~~~~~~~~VfaR~sP-eqK~~IV~~lq~-~g~-vv~~~GDG~ND~paLk~AdVG 705 (997)
T TIGR01106 640 HGSDLKDMTSEQLDEILKYHTEIVFARTSP-QQKLIIVEGCQR-QGA-IVAVTGDGVNDSPALKKADIG 705 (997)
T ss_pred EhHHhhhCCHHHHHHHHHhcCCEEEEECCH-HHHHHHHHHHHH-CCC-EEEEECCCcccHHHHhhCCcc
Confidence 10 0 02234 578889998853 444 8899999 8999999875443
No 184
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.12 E-value=2.8 Score=49.71 Aligned_cols=60 Identities=5% Similarity=0.072 Sum_probs=43.0
Q ss_pred CCeeEEEeeccceeccccc--cCCCcccchhHHHHHHHHHHC-CCeEEEEecCCchhhHHHHHHHh
Q psy4654 376 RTEVVVFSVDGSFTASVSV--TGRDPKVRAGAVDIVRHWQEL-GYLIIYITGRPDMQQGRVLSWLS 438 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~--~g~D~~~~~GA~elv~~l~~~-GY~IIYLTaRp~~~~~~T~~WL~ 438 (559)
...++++|.||||+..... --.+..+.+++.++++.|.+. +..+.++|||+. +...+||.
T Consensus 506 ~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~---~~L~~~~~ 568 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGK---DILDKNFG 568 (797)
T ss_pred cCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCH---HHHHHHhC
Confidence 3468899999999954321 112345778999999999865 567889999965 44557775
No 185
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=82.78 E-value=1.3 Score=43.87 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.0
Q ss_pred eeEEEeeccceecccc
Q psy4654 378 EVVVFSVDGSFTASVS 393 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~ 393 (559)
.+|++|.|||+|..|+
T Consensus 4 ~vi~sDFDGTITl~Ds 19 (220)
T COG4359 4 PVIFSDFDGTITLNDS 19 (220)
T ss_pred eEEEecCCCceEecch
Confidence 5788999999999885
No 186
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=81.94 E-value=7.4 Score=43.28 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=66.4
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCC
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.-.|+ +++++.++++.+++.|++++.+||.....+....+.+ |+ .. +-.| ..|.++++.+.. .+
T Consensus 343 ~l~d~-lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l---gi------~~---~~~p-~~K~~~v~~l~~-~g- 406 (499)
T TIGR01494 343 GLEDP-LRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL---GI------FA---RVTP-EEKAALVEALQK-KG- 406 (499)
T ss_pred EecCC-CchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc---Cc------ee---ccCH-HHHHHHHHHHHH-CC-
Confidence 34564 8999999999999999999999999998888887777 33 11 2334 679999999853 33
Q ss_pred cEEEEeCC-ccchhHHHhcCCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI~ 495 (559)
...+.-|| .+|+.+.+..++-
T Consensus 407 ~~v~~vGDg~nD~~al~~Advg 428 (499)
T TIGR01494 407 RVVAMTGDGVNDAPALKKADVG 428 (499)
T ss_pred CEEEEECCChhhHHHHHhCCCc
Confidence 56788899 8999998876544
No 187
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=81.59 E-value=9.8 Score=36.08 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=73.2
Q ss_pred EEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhH
Q psy4654 381 VFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGH 460 (559)
Q Consensus 381 IfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~ 460 (559)
.-++++|||... +..+.+.+.++.|++. -.|++-||-..+.-.. -++--|+|-..++--. || ..
T Consensus 18 ~~~v~~tiatgG-------klf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~---lae~~gi~~~rv~a~a----~~-e~ 81 (152)
T COG4087 18 AGKVLYTIATGG-------KLFSEVSETIQELHDM-VDIYIASGDRKGSLVQ---LAEFVGIPVERVFAGA----DP-EM 81 (152)
T ss_pred cceEEEEEccCc-------EEcHhhHHHHHHHHHh-heEEEecCCcchHHHH---HHHHcCCceeeeeccc----CH-HH
Confidence 357889998653 3566788999999998 8888888765543222 2223478776654332 23 57
Q ss_pred HHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCC
Q psy4654 461 KASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 461 K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
|...+++|.. .+.+..+.|| ++|+-+.|+..+- |-+|+..
T Consensus 82 K~~ii~eLkk--~~~k~vmVGnGaND~laLr~ADlG---I~tiq~e 122 (152)
T COG4087 82 KAKIIRELKK--RYEKVVMVGNGANDILALREADLG---ICTIQQE 122 (152)
T ss_pred HHHHHHHhcC--CCcEEEEecCCcchHHHhhhcccc---eEEeccC
Confidence 9999999943 6778999999 9999999997764 3466653
No 188
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=80.68 E-value=0.67 Score=43.25 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.2
Q ss_pred eEEEeeccceecccc
Q psy4654 379 VVVFSVDGSFTASVS 393 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~ 393 (559)
+|+||+||||.++..
T Consensus 1 ~viFD~DGTL~D~~~ 15 (175)
T TIGR01493 1 AMVFDVYGTLVDVHG 15 (175)
T ss_pred CeEEecCCcCcccHH
Confidence 589999999999873
No 189
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=79.58 E-value=12 Score=43.97 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=70.6
Q ss_pred eeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHh-hCCCCCceeEecCCCCCC
Q psy4654 378 EVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLS-QHNFPHGLVSFADGLSPG 456 (559)
Q Consensus 378 k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~-qhglP~G~L~lr~g~~~d 456 (559)
.++.+-.|+++.-- +.-+|| +++|+.+.++.+++.|.+++.+||-.... .+.+. +-|+.. + +. +-.
T Consensus 426 ~~l~va~~~~~lG~--i~l~D~-~R~~~~eai~~Lr~~GI~vvMiTGDn~~T----A~aIA~elGId~--v-~A---~~~ 492 (679)
T PRK01122 426 TPLVVAEDNRVLGV--IYLKDI-VKPGIKERFAELRKMGIKTVMITGDNPLT----AAAIAAEAGVDD--F-LA---EAT 492 (679)
T ss_pred cEEEEEECCeEEEE--EEEecc-CchhHHHHHHHHHHCCCeEEEECCCCHHH----HHHHHHHcCCcE--E-Ec---cCC
Confidence 33444446554422 234575 89999999999999999999999976543 33444 347743 2 22 223
Q ss_pred hhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 457 FLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 457 p~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
| +.|.+.++.+.+ .-.+++--|| .+|.-+.++..|
T Consensus 493 P-edK~~iV~~lQ~--~G~~VaMtGDGvNDAPALa~ADV 528 (679)
T PRK01122 493 P-EDKLALIRQEQA--EGRLVAMTGDGTNDAPALAQADV 528 (679)
T ss_pred H-HHHHHHHHHHHH--cCCeEEEECCCcchHHHHHhCCE
Confidence 5 679999999954 3457999999 899999988644
No 190
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=79.13 E-value=11 Score=45.30 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=65.7
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecC------------------C-CCC
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFAD------------------G-LSP 455 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~------------------g-~~~ 455 (559)
.-.|| +++++.+.++.+++.|.+++.+||-....+... =++-|+..+.++... . -+-
T Consensus 511 ~l~Dp-~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aI---A~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~ 586 (867)
T TIGR01524 511 GFLDP-PKESTKEAIAALFKNGINVKVLTGDNEIVTARI---CQEVGIDANDFLLGADIEELSDEELARELRKYHIFARL 586 (867)
T ss_pred EeeCC-CchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHH---HHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEEC
Confidence 34575 899999999999999999999999776544332 223466533332210 0 012
Q ss_pred ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 456 GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 456 dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.| ..|...++.+.+ .-.+++..|| .+|+-|.+++.|-
T Consensus 587 ~P-e~K~~iV~~lq~--~G~vVam~GDGvNDapALk~AdVG 624 (867)
T TIGR01524 587 TP-MQKSRIIGLLKK--AGHTVGFLGDGINDAPALRKADVG 624 (867)
T ss_pred CH-HHHHHHHHHHHh--CCCEEEEECCCcccHHHHHhCCEE
Confidence 34 679999999954 3358999999 8999999986655
No 191
>KOG1692|consensus
Probab=78.63 E-value=11 Score=37.57 Aligned_cols=86 Identities=19% Similarity=0.366 Sum_probs=55.9
Q ss_pred eeEeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEcCCceeEEEEEEeeCCCCeeEEEeeccce
Q psy4654 309 LTVDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDHTSVDFYLAVVPPRTEVVVFSVDGSF 388 (559)
Q Consensus 309 l~vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~gd~t~~~~~i~v~~~~~k~VIfDIDGTl 388 (559)
+.||+-|. .| .|+- +-..+-+|+|+.+|..|.+ |.|..=|.=+- -.-.+|.|.|+||+..
T Consensus 55 ~~vd~~I~-gP-~~~~--i~~~~~~ssgk~tF~a~~~-----G~Y~fCF~N~~-----------s~mtpk~V~F~ihvg~ 114 (201)
T KOG1692|consen 55 LGVDVEIT-GP-DGKI--IHKGKRESSGKYTFTAPKK-----GTYTFCFSNKM-----------STMTPKTVMFTIHVGH 114 (201)
T ss_pred cceeEEEE-CC-CCch--hhhcccccCceEEEEecCC-----ceEEEEecCCC-----------CCCCceEEEEEEEEee
Confidence 33676663 32 4443 3455667889999999866 99986543221 0125799999999999
Q ss_pred eccccccCCCcccchhHHHHHHHHHHC
Q psy4654 389 TASVSVTGRDPKVRAGAVDIVRHWQEL 415 (559)
Q Consensus 389 t~sd~~~g~D~~~~~GA~elv~~l~~~ 415 (559)
+....-+-+|+ -.+-.-+.+++|.+.
T Consensus 115 ~~~~~d~~~d~-~~~~L~~~I~eL~~a 140 (201)
T KOG1692|consen 115 APQRDDLAKDA-HQNKLEEMIRELSEA 140 (201)
T ss_pred ccccchhcccc-cccHHHHHHHHHHHH
Confidence 88876666664 233355666666553
No 192
>PLN02811 hydrolase
Probab=78.42 E-value=8.3 Score=37.77 Aligned_cols=94 Identities=17% Similarity=0.075 Sum_probs=56.0
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeEecC--C---CCCChhhHHHHHHHHHh-hc
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVSFAD--G---LSPGFLGHKASYLKSLI-QD 471 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~lr~--g---~~~dp~~~K~~~L~~L~-~~ 471 (559)
.+.+||.++++.|+++|+.+.++|+-+.... +...+...++ .++.++..+ . ..++|+.+.. +++.+- ..
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~--~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~-a~~~~~~~~ 154 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHF--DLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLA-AARRFEDGP 154 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhH--HHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHH-HHHHhCCCC
Confidence 4689999999999999999999998654322 1111211233 123444444 1 1345544332 333330 00
Q ss_pred cCCcEEEEeCC-ccchhHHHhcCCCC
Q psy4654 472 HGVVIHAAYGS-NKDVSVYTSVGLKP 496 (559)
Q Consensus 472 ~~~~i~aafGN-~~DV~aYr~vGI~~ 496 (559)
....=...+|| ..|+.+-+++|+++
T Consensus 155 ~~~~~~v~IgDs~~di~aA~~aG~~~ 180 (220)
T PLN02811 155 VDPGKVLVFEDAPSGVEAAKNAGMSV 180 (220)
T ss_pred CCccceEEEeccHhhHHHHHHCCCeE
Confidence 12223677888 68999999999965
No 193
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=77.89 E-value=23 Score=33.06 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=66.4
Q ss_pred eeeccCCCcccceeEEecCCceeEEEeeecCCCcceeeeEeE------EEEecC---CCCcEEEEEEE-----EeCCCcc
Q psy4654 272 KIKNATANHRANDVIVKEGLPQTLVARFMYGPFDMFTLTVDV------HLIKEP---PSGEWVLMSTE-----VTDKTGR 337 (559)
Q Consensus 272 k~~~~~~~Hr~~d~i~~~~~~~~~~~~F~yg~~d~~~l~vdi------~~~~~~---~~g~w~~~~t~-----~t~s~gr 337 (559)
.+..+.+. ..+..++..|+.-.+.+.|.-. ..+....||| |-=..+ +...|.+.-++ +++..-.
T Consensus 18 ~~~~~~~~-p~~~~~~~~G~~ihfe~~i~d~-~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h 95 (132)
T PF15418_consen 18 TLNEIGAF-PENCKVATRGDDIHFEADISDN-SAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKKNYDFH 95 (132)
T ss_pred EeeecccC-CCCCeEEecCCcEEEEEEEEcc-cceeEEEEEEecCcCcccccccccccccCcEEEEEEcccCCcccEeEE
Confidence 33344543 3567888899998888888652 2233334888 433221 16789998776 4455557
Q ss_pred EEEecCCCCcCCCCccceEEEEc---CCceeEEEEEEe
Q psy4654 338 VSYTLPEDHKLSYGMYPVKMVVR---GDHTSVDFYLAV 372 (559)
Q Consensus 338 i~~~~p~~~~L~~G~y~vkmvV~---gd~t~~~~~i~v 372 (559)
..+.||++ +.+|.|.+.+.|. |-.+.....|.|
T Consensus 96 ~~i~IPa~--a~~G~YH~~i~VtD~~Gn~~~~~~~i~I 131 (132)
T PF15418_consen 96 EHIDIPAD--APAGDYHFMITVTDAAGNQTEEERSIKI 131 (132)
T ss_pred EeeeCCCC--CCCcceEEEEEEEECCCCEEEEEEEEEE
Confidence 78899998 8999999999996 777776666654
No 194
>PTZ00445 p36-lilke protein; Provisional
Probab=76.88 E-value=4.1 Score=41.24 Aligned_cols=125 Identities=16% Similarity=0.016 Sum_probs=72.9
Q ss_pred eCCCCeeEEEeeccceeccccccCCCcc---------cchhHHHHHHHHHHCCCeEEEEecCCchh------------hH
Q psy4654 373 VPPRTEVVVFSVDGSFTASVSVTGRDPK---------VRAGAVDIVRHWQELGYLIIYITGRPDMQ------------QG 431 (559)
Q Consensus 373 ~~~~~k~VIfDIDGTlt~sd~~~g~D~~---------~~~GA~elv~~l~~~GY~IIYLTaRp~~~------------~~ 431 (559)
...|-|+|++|+|-||...-+--..+|. +.+....++.++.+.|..|+.+|=-+... .+
T Consensus 39 ~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~ 118 (219)
T PTZ00445 39 NECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDR 118 (219)
T ss_pred HHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHH
Confidence 4568899999999998773322111222 57788999999999999999999665433 35
Q ss_pred HHHHHHhhCCCCCce--eE-------------ecCC-CCCChhhHHHHHHHHHhhccCCcE--EEEeCC-ccchhHHHhc
Q psy4654 432 RVLSWLSQHNFPHGL--VS-------------FADG-LSPGFLGHKASYLKSLIQDHGVVI--HAAYGS-NKDVSVYTSV 492 (559)
Q Consensus 432 ~T~~WL~qhglP~G~--L~-------------lr~g-~~~dp~~~K~~~L~~L~~~~~~~i--~aafGN-~~DV~aYr~v 492 (559)
+...-|+.-+..... ++ .+.+ ..++|+ .|.--|+.+.+..++.. ..=+|| ...|.+-+++
T Consensus 119 li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~-iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~l 197 (219)
T PTZ00445 119 MVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPL-DKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKE 197 (219)
T ss_pred HHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCcc-chHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHC
Confidence 566666632221111 11 1112 234553 33333444443333311 112455 6778888888
Q ss_pred CCCCCc
Q psy4654 493 GLKPRS 498 (559)
Q Consensus 493 GI~~~~ 498 (559)
|+..-+
T Consensus 198 Gi~ai~ 203 (219)
T PTZ00445 198 GYIALH 203 (219)
T ss_pred CCEEEE
Confidence 886644
No 195
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=76.11 E-value=14 Score=44.79 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=63.4
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCC-c------------------------eeEe
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPH-G------------------------LVSF 449 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~-G------------------------~L~l 449 (559)
.-.|| +++++.+.++.+++.|.+++.+||.....+..+-+= -|+.. + .++-
T Consensus 575 ~~~Dp-lr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~---~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfa 650 (941)
T TIGR01517 575 GIKDP-LRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARN---CGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLA 650 (941)
T ss_pred eccCC-CchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHH---cCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEE
Confidence 34565 899999999999999999999999986655444222 24421 1 1221
Q ss_pred cCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcC
Q psy4654 450 ADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVG 493 (559)
Q Consensus 450 r~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vG 493 (559)
+-.| ..|...++.|.+ .| .+++.-|| .+|+-|.+++.
T Consensus 651 ----r~sP-e~K~~iV~~lq~-~g-~vVam~GDGvNDapALk~Ad 688 (941)
T TIGR01517 651 ----RSSP-LDKQLLVLMLKD-MG-EVVAVTGDGTNDAPALKLAD 688 (941)
T ss_pred ----ECCH-HHHHHHHHHHHH-CC-CEEEEECCCCchHHHHHhCC
Confidence 2234 679999999954 33 37899999 89999999853
No 196
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=75.29 E-value=11 Score=44.10 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=64.7
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCC
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
.-.|| +++++.+.++.+++.|.+++.+||.....+...-+ +-|+.. ++. +-.| ..|.+.++.+++ .-
T Consensus 437 ~l~Dp-~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~---elGI~~---v~A---~~~P-edK~~iV~~lQ~--~G 503 (673)
T PRK14010 437 YLKDV-IKDGLVERFRELREMGIETVMCTGDNELTAATIAK---EAGVDR---FVA---ECKP-EDKINVIREEQA--KG 503 (673)
T ss_pred EeecC-CcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH---HcCCce---EEc---CCCH-HHHHHHHHHHHh--CC
Confidence 34575 89999999999999999999999987665544322 236642 222 2234 679999999954 44
Q ss_pred cEEEEeCC-ccchhHHHhcCC
Q psy4654 475 VIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 475 ~i~aafGN-~~DV~aYr~vGI 494 (559)
.+++--|| .+|.-+.++..|
T Consensus 504 ~~VaMtGDGvNDAPALa~ADV 524 (673)
T PRK14010 504 HIVAMTGDGTNDAPALAEANV 524 (673)
T ss_pred CEEEEECCChhhHHHHHhCCE
Confidence 68899999 899999988644
No 197
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=75.13 E-value=15 Score=45.15 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=64.3
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCc-----------eeEecC------------
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHG-----------LVSFAD------------ 451 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G-----------~L~lr~------------ 451 (559)
.-.|| +++++.+.++.+++.|.+++.+||.....+..+ -++-|+... ...+.+
T Consensus 642 ~~~Dp-~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~i---A~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~ 717 (1053)
T TIGR01523 642 GIYDP-PRNESAGAVEKCHQAGINVHMLTGDFPETAKAI---AQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVD 717 (1053)
T ss_pred eeecC-CchhHHHHHHHHHHCCCEEEEECCCCHHHHHHH---HHHcCCCCccccccccccccceeeehHHhhhcCHHHHH
Confidence 44575 899999999999999999999999876554433 223455311 111110
Q ss_pred -------C-CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 452 -------G-LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 452 -------g-~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
. -+-.| ..|...++.+.+ .-.+++..|| .+|+-|.+.+.|-
T Consensus 718 ~~~~~~~V~ar~sP-~~K~~iV~~lq~--~g~~Vam~GDGvNDapaLk~AdVG 767 (1053)
T TIGR01523 718 DLKALCLVIARCAP-QTKVKMIEALHR--RKAFCAMTGDGVNDSPSLKMANVG 767 (1053)
T ss_pred HHhhcCeEEEecCH-HHHHHHHHHHHh--cCCeeEEeCCCcchHHHHHhCCcc
Confidence 0 02234 579999999854 2347889999 8999999986544
No 198
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=74.94 E-value=33 Score=36.23 Aligned_cols=102 Identities=21% Similarity=0.211 Sum_probs=61.4
Q ss_pred cchhHHHHHHHHHHCCCe-EEEEecCCc--hhhHH---HHHHHhhCCCCC-ceeEecCCCCCChhhHHHHHHHHHhhcc-
Q psy4654 401 VRAGAVDIVRHWQELGYL-IIYITGRPD--MQQGR---VLSWLSQHNFPH-GLVSFADGLSPGFLGHKASYLKSLIQDH- 472 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY~-IIYLTaRp~--~~~~~---T~~WL~qhglP~-G~L~lr~g~~~dp~~~K~~~L~~L~~~~- 472 (559)
-..|+.+.+++|.++||+ |.|+++... ..+++ -++.|+++|++. ...+..+.. .+ ..-.+.+..++...
T Consensus 159 n~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~--~~-~~g~~~~~~ll~~~~ 235 (333)
T COG1609 159 NFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDF--SE-ESGYEAAERLLARGE 235 (333)
T ss_pred hHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCC--Ch-HHHHHHHHHHHhcCC
Confidence 477889999999999995 999999853 22333 356667899986 333332222 22 23444455554211
Q ss_pred C-Cc-EEEEeCC-c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 473 G-VV-IHAAYGS-N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 473 ~-~~-i~aafGN-~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
. .. ++++=|. + -.+.+.+..|+. |.+|-+||=.
T Consensus 236 ~~ptAif~~nD~~Alg~l~~~~~~g~~vP~disviGfD 273 (333)
T COG1609 236 PRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFD 273 (333)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCCeeEEEEec
Confidence 1 22 3333333 3 455577788886 5568888854
No 199
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=74.91 E-value=14 Score=34.83 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=55.2
Q ss_pred EEEEEeCCCccEEEecCCCCcCCCCccceEEEEcCCceeEEEEEEeeCCCCeeEEEeeccceeccccccCCCcccchhHH
Q psy4654 327 MSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDHTSVDFYLAVVPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAV 406 (559)
Q Consensus 327 ~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~gd~t~~~~~i~v~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~ 406 (559)
..+..|+..|.=+|+ +.+|.|.|...+.|....+-+-|+|.+... ||||=+--..+..+ ...|.+.
T Consensus 38 ~as~~t~~~G~Ys~~------~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~-------pGTLN~fL~~~~e~-dl~Pevl 103 (134)
T PF08400_consen 38 VASVVTGEAGEYSFD------VEPGVYRVTLKVEGRPPVYVGDITVYEDSK-------PGTLNDFLTAPDED-DLRPEVL 103 (134)
T ss_pred EEEEEcCCCceEEEE------ecCCeEEEEEEECCCCceeEEEEEEecCCC-------CCcHHHHhhccccc-cCCHHHH
Confidence 355689999998888 478999999999999888889999977644 58875443222233 4778777
Q ss_pred HHHHHHHHC
Q psy4654 407 DIVRHWQEL 415 (559)
Q Consensus 407 elv~~l~~~ 415 (559)
.-++.|.++
T Consensus 104 k~fe~m~~~ 112 (134)
T PF08400_consen 104 KRFEEMVAQ 112 (134)
T ss_pred HHHHHHHHH
Confidence 777777654
No 200
>KOG3040|consensus
Probab=73.56 E-value=9 Score=38.96 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=44.6
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH 440 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh 440 (559)
-+.|..||-|||-.++. ..||++|.++.|++++-++=|+|--....+....+-|.+-
T Consensus 7 v~gvLlDlSGtLh~e~~-------avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rl 63 (262)
T KOG3040|consen 7 VKGVLLDLSGTLHIEDA-------AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRL 63 (262)
T ss_pred cceEEEeccceEecccc-------cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHh
Confidence 47899999999998764 6789999999999999999999987665554444444443
No 201
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=72.46 E-value=20 Score=29.97 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=49.2
Q ss_pred EEecCCceeEEEeeecCCCcceeeeEeEEEEecCC--CCcEEEEEEEEeCCCccEEEecCCCCcCCC-CccceEEEEcCC
Q psy4654 286 IVKEGLPQTLVARFMYGPFDMFTLTVDVHLIKEPP--SGEWVLMSTEVTDKTGRVSYTLPEDHKLSY-GMYPVKMVVRGD 362 (559)
Q Consensus 286 i~~~~~~~~~~~~F~yg~~d~~~l~vdi~~~~~~~--~g~w~~~~t~~t~s~gri~~~~p~~~~L~~-G~y~vkmvV~gd 362 (559)
++..|.+.+| ++..+.-|- -.++|+++..+. ...+..+.+.+.+++|.+++.+|.+ |+. +-|.|+|+..++
T Consensus 8 ~~~~g~~~~I--~W~~~~~~~--~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~--l~~~~~Y~i~~~~~~~ 81 (93)
T PF10342_consen 8 VWTAGQPITI--TWTSDGTDP--GNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD--LPSGGDYFIQIVNSSN 81 (93)
T ss_pred EEECCCcEEE--EEeCCCCCC--cEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC--CCCCCcEEEEEEECCC
Confidence 3455544444 344432221 227888888743 3568889988999899999999987 443 689999997766
Q ss_pred c
Q psy4654 363 H 363 (559)
Q Consensus 363 ~ 363 (559)
.
T Consensus 82 ~ 82 (93)
T PF10342_consen 82 N 82 (93)
T ss_pred C
Confidence 5
No 202
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=72.30 E-value=26 Score=36.76 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=63.7
Q ss_pred CcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeE-----ec-CCC---CCChhh---HHHH
Q psy4654 398 DPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVS-----FA-DGL---SPGFLG---HKAS 463 (559)
Q Consensus 398 D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~-----lr-~g~---~~dp~~---~K~~ 463 (559)
...+++|+.++++.++++|..+.++||=. ...++.-|++.|+ +...++ +. +|. .++|.. .|.+
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~---~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~ 195 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGI---GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNH 195 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHH
Confidence 34579999999999999999999999744 4556666777777 344441 21 221 234421 3444
Q ss_pred HHHH-Hhh--c--cCCcEEEEeCC-ccchhHHHhcCCCC-CcEEEEcCC
Q psy4654 464 YLKS-LIQ--D--HGVVIHAAYGS-NKDVSVYTSVGLKP-RSIYIVGKV 505 (559)
Q Consensus 464 ~L~~-L~~--~--~~~~i~aafGN-~~DV~aYr~vGI~~-~~If~i~~~ 505 (559)
.+.. ... . ....=...+|| ++|+.| +-|++. ++|..||=-
T Consensus 196 ~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~m--a~g~~~~~~~l~igfl 242 (277)
T TIGR01544 196 DVALRNTEYFNQLKDRSNIILLGDSQGDLRM--ADGVANVEHILKIGYL 242 (277)
T ss_pred HHHHHHHHHhCccCCcceEEEECcChhhhhH--hcCCCcccceEEEEec
Confidence 3332 111 0 12223568899 799999 568855 677777743
No 203
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.03 E-value=66 Score=32.03 Aligned_cols=125 Identities=20% Similarity=0.159 Sum_probs=65.0
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCc-------------------hh---hHH
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPD-------------------MQ---QGR 432 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~-------------------~~---~~~ 432 (559)
+.++|.+|-+.. .....++.| -..+...+...+.++|| +|.+++++.. .. .+.
T Consensus 79 ~ipvV~~~~~~~--~~~~~v~~d--~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~g 154 (283)
T cd06279 79 GLPVVVVDQPLP--PGVPSVGID--DRAAAREAARHLLDLGHRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEG 154 (283)
T ss_pred CCCEEEEecCCC--CCCCEEeeC--cHHHHHHHHHHHHHcCCCcEEEecCcccccccccccccccccccccccHHHHHHH
Confidence 446677765533 112235555 35567778888888998 6778876531 11 133
Q ss_pred HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 433 VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 433 T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.++++++++++.....+......+.+.. ...++.++.. .....+...++ + ..+.+.++.|+. |.+|-+|+-.
T Consensus 155 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vig~d 231 (283)
T cd06279 155 YLEALEEAGIDISDVPIWEIPENDRASG-EEAARELLDASPRPTAILCMSDVLALGALQVARELGLRVPEDLSVVGFD 231 (283)
T ss_pred HHHHHHHcCCCCChheEEecCCCchHHH-HHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEeeeC
Confidence 4567778887654322211111122111 1233444321 12333333333 2 467888889986 4566666643
No 204
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=70.87 E-value=20 Score=43.29 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecC------------------C-CCC
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFAD------------------G-LSP 455 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~------------------g-~~~ 455 (559)
.-.|| +++++.+.++.+++.|.+++.+||-....+...- ++-|+..+.++... . -+-
T Consensus 546 ~~~Dp-~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA---~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~ 621 (902)
T PRK10517 546 AFLDP-PKETTAPALKALKASGVTVKILTGDSELVAAKVC---HEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARL 621 (902)
T ss_pred hhhCc-chhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH---HHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEc
Confidence 34575 8999999999999999999999997765443321 23466433222110 0 012
Q ss_pred ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCC
Q psy4654 456 GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGL 494 (559)
Q Consensus 456 dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI 494 (559)
.| ..|...++.|.+ .-.+++--|| .+|+-|.+++.|
T Consensus 622 sP-e~K~~IV~~Lq~--~G~vVam~GDGvNDaPALk~ADV 658 (902)
T PRK10517 622 TP-MHKERIVTLLKR--EGHVVGFMGDGINDAPALRAADI 658 (902)
T ss_pred CH-HHHHHHHHHHHH--CCCEEEEECCCcchHHHHHhCCE
Confidence 34 679999999954 3458899999 899999988544
No 205
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=70.58 E-value=2.1 Score=40.66 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHHHHhhccCCcEEEEeCC--ccchhHHHhcCCCCCcEEE
Q psy4654 462 ASYLKSLIQDHGVVIHAAYGS--NKDVSVYTSVGLKPRSIYI 501 (559)
Q Consensus 462 ~~~L~~L~~~~~~~i~aafGN--~~DV~aYr~vGI~~~~If~ 501 (559)
.++|+.|. ..|+.+...=|| .+.....+.+||+...+|-
T Consensus 133 ~~~l~~L~-~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a 173 (215)
T PF00702_consen 133 KEALQELK-EAGIKVAILTGDNESTASAIAKQLGIFDSIVFA 173 (215)
T ss_dssp HHHHHHHH-HTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEE
T ss_pred hhhhhhhh-ccCcceeeeeccccccccccccccccccccccc
Confidence 45667774 457766666677 3566677779997766765
No 206
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=69.43 E-value=81 Score=30.71 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCc-h--hhHH---HHHHHhhCCCCCceeE
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPD-M--QQGR---VLSWLSQHNFPHGLVS 448 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~-~--~~~~---T~~WL~qhglP~G~L~ 448 (559)
+.++|.+|-+-. .....++.|. ..++..+.+.+.++|+ +|.|+++... . ..++ -++.|++++++...+.
T Consensus 75 gipvv~~~~~~~--~~~~~V~~d~--~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~ 150 (265)
T cd06291 75 DLPIVSFDRYLS--ENIPIVSSDN--YEGGRLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIE 150 (265)
T ss_pred CCCEEEEeCCCC--CCCCeEeech--HHHHHHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChhe
Confidence 445555554421 2223356663 4556778888888898 7889987765 2 2233 3567778887654332
Q ss_pred ecCCCCCChhhHHHHHHHHHhhccCCcEEEEeC--C--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 449 FADGLSPGFLGHKASYLKSLIQDHGVVIHAAYG--S--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 449 lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafG--N--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.... ..+. . -...+++++.. .-.+-+-|. + + -.+.+.++.|+. |..|-+++-.
T Consensus 151 ~~~~-~~~~-~-~~~~~~~~l~~-~~~~~ai~~~~d~~a~~~~~al~~~g~~vp~di~v~g~d 209 (265)
T cd06291 151 IQEN-FDDA-E-KKEEIKELLEE-YPDIDGIFASNDLTAILVLKEAQQRGIRVPEDLQIIGYD 209 (265)
T ss_pred eecc-ccch-H-HHHHHHHHHhC-CCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEeccC
Confidence 2211 1111 1 12344544332 112233333 2 2 456777889987 6678777754
No 207
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=69.02 E-value=25 Score=42.55 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=65.0
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecC------------------C-CCC
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFAD------------------G-LSP 455 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~------------------g-~~~ 455 (559)
.-.|| +++++.+.++.+++.|.+++.+||-....+... =++-|+..+.++... . -+-
T Consensus 546 ~l~Dp-~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aI---A~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~ 621 (903)
T PRK15122 546 TFLDP-PKESAAPAIAALRENGVAVKVLTGDNPIVTAKI---CREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKL 621 (903)
T ss_pred eccCc-cHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHH---HHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEe
Confidence 44576 899999999999999999999999875544333 223466433222100 0 012
Q ss_pred ChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCC
Q psy4654 456 GFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLK 495 (559)
Q Consensus 456 dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~ 495 (559)
.| ..|...++.|.+ .-.+++--|| .+|+-|.+++.|-
T Consensus 622 sP-e~K~~iV~~Lq~--~G~vVamtGDGvNDaPALk~ADVG 659 (903)
T PRK15122 622 TP-LQKSRVLKALQA--NGHTVGFLGDGINDAPALRDADVG 659 (903)
T ss_pred CH-HHHHHHHHHHHh--CCCEEEEECCCchhHHHHHhCCEE
Confidence 34 679999999954 3458999999 8999999885443
No 208
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=68.17 E-value=6.6 Score=38.90 Aligned_cols=91 Identities=21% Similarity=0.179 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeC
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYG 481 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafG 481 (559)
.++++++.+.+.+.||+|+- | ..|.+||+++|+|.-.+.=-- .=||.. -.-+|.|-+...--|.+.=+
T Consensus 10 K~~l~~lAk~L~~lGf~I~A-T-------~GTAk~L~e~GI~v~~V~k~T---gfpE~l-~GRVKTLHP~ihggiL~~~~ 77 (187)
T cd01421 10 KTGLVEFAKELVELGVEILS-T-------GGTAKFLKEAGIPVTDVSDIT---GFPEIL-GGRVKTLHPKIHGGILARRD 77 (187)
T ss_pred cccHHHHHHHHHHCCCEEEE-c-------cHHHHHHHHcCCeEEEhhhcc---CCcHhh-CCccccCChhhhhhhhcCCC
Confidence 45789999999999999964 3 369999999999765543110 001000 00011121111112344445
Q ss_pred CccchhHHHhcCCCCCcEEEEcCC
Q psy4654 482 SNKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 482 N~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
|..+. .....||.+-.+.+||-.
T Consensus 78 ~~~~~-~~~~~~i~~idlVvvNlY 100 (187)
T cd01421 78 NEEHK-DLEEHGIEPIDLVVVNLY 100 (187)
T ss_pred ChhHH-HHHHcCCCCeeEEEEccc
Confidence 55555 666788888888888754
No 209
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.61 E-value=74 Score=31.02 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=58.8
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCch--hh---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDM--QQ---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSL 468 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L 468 (559)
++.| ...++....+.+.++|+ +|.|+++.+.. .. +.-+++|++++++........+ ..+.+. ....++++
T Consensus 97 v~~d--~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 172 (270)
T cd06296 97 VGAT--NWAGGLAATEHLLELGHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREG-DFSTES-GFRAAAEL 172 (270)
T ss_pred EEeC--cHHHHHHHHHHHHHcCCCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeC-CCCHHH-HHHHHHHH
Confidence 4555 35667777888888888 78899987642 22 3345678888886543222111 112211 22334444
Q ss_pred hhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcC
Q psy4654 469 IQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGK 504 (559)
Q Consensus 469 ~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~ 504 (559)
+.. .....+.+..+ + ..+.+.++.|+. |.+|.+++-
T Consensus 173 l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~ 213 (270)
T cd06296 173 LALPERPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGF 213 (270)
T ss_pred HhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEE
Confidence 331 12223333333 2 467888889986 567766663
No 210
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.55 E-value=1.1e+02 Score=30.55 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHCCC-eEEEEecCCchh-----hHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-C
Q psy4654 401 VRAGAVDIVRHWQELGY-LIIYITGRPDMQ-----QGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-G 473 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY-~IIYLTaRp~~~-----~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~ 473 (559)
-..++..+++++.++|| +|.|+++.+... .+..+++++++|++...+..... .+.+. -...+++++... .
T Consensus 102 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~--~~~~~-~~~~~~~~l~~~~~ 178 (269)
T cd06287 102 SAATARMLLEHLRAQGARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRVDEA--GGEEA-GYAACAQLLAQHPD 178 (269)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeEecCC--CChHH-HHHHHHHHHhCCCC
Confidence 35778899999999999 788998765322 12346778889987653322211 11111 123445554321 2
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEc
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVG 503 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~ 503 (559)
..-+.+..+ + -.+.+.++.|+. |..|-+|+
T Consensus 179 ~~ai~~~~d~~A~gvl~al~~~gl~vP~dvsvig 212 (269)
T cd06287 179 LDALCVPVDAFAVGAVRAATELGRAVPDQLRVVT 212 (269)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 233333334 3 466778889987 55676776
No 211
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=66.42 E-value=23 Score=37.44 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=47.2
Q ss_pred CCeeEEEeeccceecccc-ccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCC-CceeEecCC
Q psy4654 376 RTEVVVFSVDGSFTASVS-VTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP-HGLVSFADG 452 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~-~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP-~G~L~lr~g 452 (559)
-+.+||||+|-||-.+.. .--+ -+.+.+-++.+++.|.-++.-| .+-++..++=|++-+++ +=.+++++|
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir----~~~v~~sL~~Lk~~g~vLvLWS---yG~~eHV~~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIR----DPAVYDSLRELKEQGCVLVLWS---YGNREHVRHSLKELKLEGYFDIIICGG 192 (297)
T ss_pred CCcEEEEECCCcccccCCccccC----ChHHHHHHHHHHHcCCEEEEec---CCCHHHHHHHHHHhCCccccEEEEeCC
Confidence 456999999999976643 2223 3468899999999998666654 35556666667766665 223555555
No 212
>KOG3120|consensus
Probab=66.29 E-value=12 Score=38.33 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=31.3
Q ss_pred ccchhHHHHHHHHHHCCC-eEEEEecCCchhhHHHHHHHhhCCC
Q psy4654 400 KVRAGAVDIVRHWQELGY-LIIYITGRPDMQQGRVLSWLSQHNF 442 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~~~~T~~WL~qhgl 442 (559)
+.+||.+++++.++++|. +++++|-- -.--...||+.+|+
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDa---NsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDA---NSFFIEEILEAAGI 124 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecC---chhHHHHHHHHccH
Confidence 378999999999999996 88888643 33345788888765
No 213
>PLN03190 aminophospholipid translocase; Provisional
Probab=65.84 E-value=27 Score=43.59 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcCCCCCcEEEEcCCCccccccceecchhHH----HHHHHHhhcCCC
Q psy4654 459 GHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVGLKPRSIYIVGKVSKKHQSQATVLSDGYA----AHLTALQQHGGS 533 (559)
Q Consensus 459 ~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vGI~~~~If~i~~~~~~~~~~~~~~~~~Y~----~hL~~l~~~~~~ 533 (559)
..|...++.+.+ .+-.+.++-|| ++||.|.+++.|-. -|.|..|. |+ .....|+ .||..|---|+.
T Consensus 857 ~QKa~IV~~vk~-~~~~vtlaIGDGaNDv~mIq~AdVGI---GIsG~EG~----qA-~~aSDfaI~~Fr~L~rLLlvHGr 927 (1178)
T PLN03190 857 LQKAGIVALVKN-RTSDMTLAIGDGANDVSMIQMADVGV---GISGQEGR----QA-VMASDFAMGQFRFLVPLLLVHGH 927 (1178)
T ss_pred HHHHHHHHHHHh-cCCcEEEEECCCcchHHHHHhcCeee---eecCchhH----HH-HHhhccchhhhHHHHHHHHHhCH
Confidence 467777777743 33467899999 99999999864433 45565542 22 3355555 689988876654
Q ss_pred C
Q psy4654 534 R 534 (559)
Q Consensus 534 ~ 534 (559)
-
T Consensus 928 ~ 928 (1178)
T PLN03190 928 W 928 (1178)
T ss_pred H
Confidence 3
No 214
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.84 E-value=1.1e+02 Score=29.85 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=60.6
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchh--hHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQ--QGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSL 468 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L 468 (559)
++.| -..+...+++++.++|| +|.|++++.... .++ -++++++++++........+ ..+... -...+.++
T Consensus 102 v~~d--~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 177 (270)
T cd06294 102 VDND--NIQAGYDATEYLIKLGHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISL-DFSEEG-GYKALKKL 177 (270)
T ss_pred EEEC--cHHHHHHHHHHHHHcCCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEec-CCchHH-HHHHHHHH
Confidence 4445 35667788898988897 788999876532 222 35677888876443222111 122222 22344454
Q ss_pred hhcc-CCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 469 IQDH-GVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 469 ~~~~-~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
+... ......+.++ + -.+.+.++.|+. |..|-+|+-.
T Consensus 178 l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~iP~dv~vig~d 219 (270)
T cd06294 178 LEQHPRPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFN 219 (270)
T ss_pred HhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEeeC
Confidence 4321 2333333444 2 466788899985 4567666643
No 215
>KOG1605|consensus
Probab=65.06 E-value=2.7 Score=43.61 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCCeeEEEeeccceecccc--ccCCCc-----------------ccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHH
Q psy4654 374 PPRTEVVVFSVDGSFTASVS--VTGRDP-----------------KVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVL 434 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~--~~g~D~-----------------~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~ 434 (559)
..+.|++|.|+|.||..|.. ..+..+ ..+|++.+.+....+. |+++..||=...++.-..
T Consensus 86 ~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~ 164 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLL 164 (262)
T ss_pred cCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHH
Confidence 44779999999999988872 211110 1256666666666554 666666666666666666
Q ss_pred HHHhh
Q psy4654 435 SWLSQ 439 (559)
Q Consensus 435 ~WL~q 439 (559)
++|..
T Consensus 165 D~LD~ 169 (262)
T KOG1605|consen 165 DILDP 169 (262)
T ss_pred HHccC
Confidence 66664
No 216
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=64.71 E-value=22 Score=37.11 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=62.6
Q ss_pred eEEEeeccceeccccc----------------cCCC----cccchhHHHHHHHHHHC------CCeEEEEecCCchhhHH
Q psy4654 379 VVVFSVDGSFTASVSV----------------TGRD----PKVRAGAVDIVRHWQEL------GYLIIYITGRPDMQQGR 432 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~----------------~g~D----~~~~~GA~elv~~l~~~------GY~IIYLTaRp~~~~~~ 432 (559)
-|.||=||+|....++ .-.+ +-+-..-...+.+++++ -..+-++|||+-...++
T Consensus 123 RIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~R 202 (264)
T PF06189_consen 123 RIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHER 202 (264)
T ss_pred EEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHH
Confidence 4789999999887641 1111 11233344455555544 23578999999888888
Q ss_pred HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCCcEE
Q psy4654 433 VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGVVIH 477 (559)
Q Consensus 433 T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~ 477 (559)
...=|+.-|+.-+..++.+|. -|..+|+.+. .+++|-
T Consensus 203 vI~TLr~Wgv~vDEafFLgG~------~K~~vL~~~~--phIFFD 239 (264)
T PF06189_consen 203 VIRTLRSWGVRVDEAFFLGGL------PKGPVLKAFR--PHIFFD 239 (264)
T ss_pred HHHHHHHcCCcHhHHHHhCCC------chhHHHHhhC--CCEeec
Confidence 888899999999998888886 4667899883 355543
No 217
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=64.18 E-value=84 Score=30.51 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=60.4
Q ss_pred ccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeE-ecCCCCCChhhHHHHHHH
Q psy4654 394 VTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVS-FADGLSPGFLGHKASYLK 466 (559)
Q Consensus 394 ~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~-lr~g~~~dp~~~K~~~L~ 466 (559)
.++.|. ..++..+.+++.++|+ +|.|+++.+.. ..++ -+++|++++++..... ....... ....+.++
T Consensus 93 ~v~~d~--~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 167 (260)
T cd06286 93 SVYIDH--YEAFYEALKYLIQKGYRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFTI---EDGERIGH 167 (260)
T ss_pred EEEECC--hHHHHHHHHHHHHCCCceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCCCH---HHHHHHHH
Confidence 345553 5566788899999998 78899887542 2222 3456778888754322 2211111 12233445
Q ss_pred HHhhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 467 SLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 467 ~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
.++.. .....+.+.++ + -.+.+.++.|+. |..|-+++-.+
T Consensus 168 ~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~ 212 (260)
T cd06286 168 QLLKMKDRPDAIFTGSDEVAAGIITEAKKQGIRVPEDLAIIGFDN 212 (260)
T ss_pred HHHcCCCCCCEEEEcchHHHHHHHHHHHHcCCCCCcceEEEeecC
Confidence 55421 12333334444 3 466788889985 56677776443
No 218
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=63.30 E-value=1.2e+02 Score=31.02 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=57.5
Q ss_pred cchhHHHHHHHHHHCCC-eEEEEecCCchh-h---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 401 VRAGAVDIVRHWQELGY-LIIYITGRPDMQ-Q---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY-~IIYLTaRp~~~-~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
-..++..++++|.++|| +|.|+++..... . +.-++.|.++|++...++..... +.+. -.+.++.++... ..
T Consensus 164 n~~~~~~a~~~L~~~Gh~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~-~~~~~~~~l~~~~~~ 240 (331)
T PRK14987 164 NFEAARQMTTAIIARGHRHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSS--SYSS-GIELIRQARREYPQL 240 (331)
T ss_pred cHHHHHHHHHHHHHCCCceEEEEcCCCcccHHHHHHHHHHHHHHcCCCccceeecCCC--Chhh-HHHHHHHHHhcCCCC
Confidence 35667788899999998 577887765422 1 22356777899865443332211 1111 123445554321 22
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.-+.+..+ + -.+.+.++.|+. |..|-+||=.
T Consensus 241 ~ai~~~nD~~A~g~~~al~~~g~~vP~disvigfD 275 (331)
T PRK14987 241 DGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFH 275 (331)
T ss_pred CEEEECCcHHHHHHHHHHHHcCCCCCCccEEEeeC
Confidence 23333444 2 356777889986 4677777754
No 219
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=62.99 E-value=1.1e+02 Score=30.12 Aligned_cols=101 Identities=10% Similarity=0.124 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch-------hh---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhh
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM-------QQ---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQ 470 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~-------~~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~ 470 (559)
..++..++.++.++|| +|.|+++.+.. .. +.-+++|+++|.+....+.... .+...-+ +.++.+++
T Consensus 97 ~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~ 173 (270)
T cd01544 97 EQAVEKALDYLLELGHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGLYDPELIYIGD--FTVESGY-QLMKEALK 173 (270)
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcCCCChheEeeCC--CCHHHHH-HHHHHHHh
Confidence 5667788899999999 58899886531 12 2235677788864332332221 1221111 23334333
Q ss_pred cc---CCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 471 DH---GVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 471 ~~---~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.. ....+.+..+ + ..+.++++.|+. |.+|-+++-.
T Consensus 174 ~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d 215 (270)
T cd01544 174 SLGDNLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVISFN 215 (270)
T ss_pred ccCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 21 2333333444 2 367888999986 4556555543
No 220
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=61.72 E-value=40 Score=41.48 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=31.0
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGR 432 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~ 432 (559)
.-.|| +++++.+.++.+++.|.+++.+||.....+..
T Consensus 652 ~~~d~-lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~ 688 (1054)
T TIGR01657 652 VFENP-LKPDTKEVIKELKRASIRTVMITGDNPLTAVH 688 (1054)
T ss_pred EEecC-CCccHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 34565 89999999999999999999999997655444
No 221
>KOG1618|consensus
Probab=61.13 E-value=13 Score=40.01 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=43.0
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHC----CCeEEEEecCCchhhHHHHHHHhh-C--CCCCceeE
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQEL----GYLIIYITGRPDMQQGRVLSWLSQ-H--NFPHGLVS 448 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~----GY~IIYLTaRp~~~~~~T~~WL~q-h--glP~G~L~ 448 (559)
.+=+++|||||.|.. |+. +.+|+.+.++.|.++ --..|+||-=.-.....-.+-|.. - .++.+.++
T Consensus 34 ~~fgfafDIDGVL~R-----G~~--~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqvi 106 (389)
T KOG1618|consen 34 PTFGFAFDIDGVLFR-----GHR--PIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVI 106 (389)
T ss_pred CceeEEEecccEEEe-----cCC--CCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHH
Confidence 445789999999984 443 578899999999988 455688886544333333334433 1 34455444
Q ss_pred e
Q psy4654 449 F 449 (559)
Q Consensus 449 l 449 (559)
+
T Consensus 107 q 107 (389)
T KOG1618|consen 107 Q 107 (389)
T ss_pred h
Confidence 4
No 222
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=61.08 E-value=96 Score=33.78 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCC------------------------chhhH
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRP------------------------DMQQG 431 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp------------------------~~~~~ 431 (559)
..+.||.=|=|+.-.+. .-+-|+.....+++.+..|+++|++++.+++=. .+|..
T Consensus 4 ~~kriVIKiGgs~L~~~-~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~~~~~~qalaavGq~~ 82 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPH-HQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRPSVPEKQAMAAAGQGL 82 (368)
T ss_pred CCcEEEEEEchhhccCC-CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCCCccHHHHHHHhhHHH
Confidence 45667777777644332 112243344567788888899999999998821 11111
Q ss_pred ---HHHHHHhhCCCCCceeEecCCCCCChhhHH--HHHHHHHhhccCCcEEE----------EeCCccchhHHHhcCCCC
Q psy4654 432 ---RVLSWLSQHNFPHGLVSFADGLSPGFLGHK--ASYLKSLIQDHGVVIHA----------AYGSNKDVSVYTSVGLKP 496 (559)
Q Consensus 432 ---~T~~WL~qhglP~G~L~lr~g~~~dp~~~K--~~~L~~L~~~~~~~i~a----------afGN~~DV~aYr~vGI~~ 496 (559)
....-|.++|++-..+++....-.+..+|+ ...++.|+...-+||+. +||+...++++.+.-+.+
T Consensus 83 l~~~~~~~f~~~g~~~aqvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~A 162 (368)
T PRK13402 83 LMATWSKLFLSHGFPAAQLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADA 162 (368)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCC
Confidence 123445679999887766543222233343 35666665433345544 355555677777777888
Q ss_pred CcEEEEcC
Q psy4654 497 RSIYIVGK 504 (559)
Q Consensus 497 ~~If~i~~ 504 (559)
..+++.-.
T Consensus 163 d~LiilTD 170 (368)
T PRK13402 163 DTLIILSD 170 (368)
T ss_pred CEEEEEec
Confidence 87776544
No 223
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.62 E-value=1.3e+02 Score=29.49 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=57.7
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchh--hH---HHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQ--QG---RVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSL 468 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~---~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L 468 (559)
++.| -..++..+.+.+.++|| +|.|+++.+... .+ .-++++++++++....+...+ ..+...- ...++++
T Consensus 102 V~~d--~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~~~~ 177 (273)
T cd06292 102 VSTD--DALAMRLAVRHLVALGHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARG-MFSVEGG-QAAAVEL 177 (273)
T ss_pred EEEC--cHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeC-CCCHHHH-HHHHHHH
Confidence 4445 35677888899999998 788898876532 22 235677889886544222111 1111111 1233444
Q ss_pred hhccCCc-EEEEeCC-c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 469 IQDHGVV-IHAAYGS-N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 469 ~~~~~~~-i~aafGN-~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
+.. ... |++.-+. + -.+.+..+.|+. |..|-+++-.
T Consensus 178 l~~-~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~ii~~d 217 (273)
T cd06292 178 LGS-GPTAIVAASDLMALGAIRAARRRGLRVPEDVSVVGYD 217 (273)
T ss_pred hcC-CCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeeC
Confidence 322 222 3333222 2 356777888975 5566666543
No 224
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=59.08 E-value=16 Score=41.38 Aligned_cols=91 Identities=22% Similarity=0.218 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeC
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYG 481 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafG 481 (559)
..+++++.+.|.+.||+|+.- .-|.+||+++|+|.-.+.---| -||. --.-+|.|-+...--|.+.-+
T Consensus 14 K~~iv~lAk~L~~lGfeI~AT--------~GTak~L~e~GI~v~~V~k~Tg---fpEi-l~GRVKTLHP~IhgGiLa~r~ 81 (513)
T PRK00881 14 KTGIVEFAKALVELGVEILST--------GGTAKLLAEAGIPVTEVSDVTG---FPEI-LDGRVKTLHPKIHGGILARRD 81 (513)
T ss_pred cccHHHHHHHHHHCCCEEEEc--------chHHHHHHHCCCeeEEeecccC---Cchh-cCCccccCCchhhhhhccCCC
Confidence 356899999999999999754 3699999999998766542111 0100 000011221111112344445
Q ss_pred CccchhHHHhcCCCCCcEEEEcC
Q psy4654 482 SNKDVSVYTSVGLKPRSIYIVGK 504 (559)
Q Consensus 482 N~~DV~aYr~vGI~~~~If~i~~ 504 (559)
|..+.+...+.||.+-.+.+||=
T Consensus 82 ~~~h~~~l~~~~i~~IDlVvvNL 104 (513)
T PRK00881 82 NPEHVAALEEHGIEPIDLVVVNL 104 (513)
T ss_pred CHHHHHHHHHcCCCceeEEEEeC
Confidence 56667777777777777777774
No 225
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=57.59 E-value=88 Score=33.93 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=73.1
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecC--------------Cch-----------hhH
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGR--------------PDM-----------QQG 431 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaR--------------p~~-----------~~~ 431 (559)
++.||+=|=|++-..... .-|+.....+++.+..+++.|+++|.++|= +.. |..
T Consensus 8 ~~~iVIKiGGs~l~~~~~-~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~~l~l~~~~~~~~~~qa~aavGq~~ 86 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGG-GLDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRERLGLPERPKTLAEKQAAAAVGQSR 86 (372)
T ss_pred CCEEEEEeChhhccCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHhhcCCCCCCCchHHHHHHHHHhHHH
Confidence 466788887764433211 123333445777788888999999988872 111 111
Q ss_pred ---HHHHHHhhCCCCCceeEecCCCCCChhhH-H-HHHHHHHhhccCCcEEE----------EeCCccchhHHHhcCCCC
Q psy4654 432 ---RVLSWLSQHNFPHGLVSFADGLSPGFLGH-K-ASYLKSLIQDHGVVIHA----------AYGSNKDVSVYTSVGLKP 496 (559)
Q Consensus 432 ---~T~~WL~qhglP~G~L~lr~g~~~dp~~~-K-~~~L~~L~~~~~~~i~a----------afGN~~DV~aYr~vGI~~ 496 (559)
...+-|.++|++...+++....-.+...+ . ..+++.|+...-+|+.. +|+|...++++-+.-+.+
T Consensus 87 L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~A 166 (372)
T PRK05429 87 LMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLVEA 166 (372)
T ss_pred HHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHHcCC
Confidence 11245567999987776543211111111 1 35566665432345543 577766777777777888
Q ss_pred CcEEEEcCC
Q psy4654 497 RSIYIVGKV 505 (559)
Q Consensus 497 ~~If~i~~~ 505 (559)
..++++...
T Consensus 167 d~LiilTDV 175 (372)
T PRK05429 167 DLLILLTDV 175 (372)
T ss_pred CEEEEecCC
Confidence 887775543
No 226
>PRK09526 lacI lac repressor; Reviewed
Probab=57.50 E-value=1.7e+02 Score=29.91 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--hH---HHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--QG---RVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~---~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..++..+.++|.++|| +|.|+++.+... .+ .-+++|+++|++...++..+ . +.+. -...+.+++... ..
T Consensus 166 ~~~~~~a~~~L~~~G~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~-~--~~~~-~~~~~~~~l~~~~~~ 241 (342)
T PRK09526 166 EDGTRLGVEHLVELGHQRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIAVREGD-W--SAMS-GYQQTLQMLREGPVP 241 (342)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcceEEeCC-C--chHH-HHHHHHHHhcCCCCC
Confidence 5567788889999998 788998865322 22 23667788999754332221 1 1111 112344544321 22
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.-+.+.++ + --+.+.++.|+. |..|-+||-.
T Consensus 242 ~ai~~~~d~~A~g~~~al~~~g~~vP~disvig~d 276 (342)
T PRK09526 242 SAILVANDQMALGVLRALHESGLRVPGQISVIGYD 276 (342)
T ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 22333333 2 356788889986 4677777643
No 227
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=57.03 E-value=1.6e+02 Score=30.42 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=74.4
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEE-ec-------------CCchh--h----------
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYI-TG-------------RPDMQ--Q---------- 430 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYL-Ta-------------Rp~~~--~---------- 430 (559)
++.+|.=+=||+...+.. .-|......+++.+..+++.|++++.+ || ||... .
T Consensus 9 ~~~iViK~Ggs~l~~~~~-~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~Gq~~ 87 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENG-KINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVGQPE 87 (266)
T ss_pred CCEEEEEeCCCeeeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHhHHH
Confidence 345666666665542221 223334566778888888999999886 65 22111 1
Q ss_pred --HHHHHHHhhCCCCCceeEecCCCCCChhh--HHHHHHHHHhhccCCcEEEE------------eCCccchhHHHhcCC
Q psy4654 431 --GRVLSWLSQHNFPHGLVSFADGLSPGFLG--HKASYLKSLIQDHGVVIHAA------------YGSNKDVSVYTSVGL 494 (559)
Q Consensus 431 --~~T~~WL~qhglP~G~L~lr~g~~~dp~~--~K~~~L~~L~~~~~~~i~aa------------fGN~~DV~aYr~vGI 494 (559)
....+-|.++|++...+++....-.+..+ .....++.|+...-+||... |++...++++-+.-+
T Consensus 88 l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l 167 (266)
T PRK12314 88 LMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLV 167 (266)
T ss_pred HHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHh
Confidence 11234456789987776554332222322 23567777765333454441 566556777777778
Q ss_pred CCCcEEEEcCCCcc
Q psy4654 495 KPRSIYIVGKVSKK 508 (559)
Q Consensus 495 ~~~~If~i~~~~~~ 508 (559)
.+..+.+.-...+.
T Consensus 168 ~Ad~liilTDVdGV 181 (266)
T PRK12314 168 KADLLIILSDIDGL 181 (266)
T ss_pred CCCEEEEEeCCCcc
Confidence 88887775554333
No 228
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=55.84 E-value=2.1e+02 Score=27.97 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHC--CC-eEEEEecCCchh--h---HHHHHHHhhCC-CCCceeEecCCCCCChhhHHHHHHHHHhhc-
Q psy4654 402 RAGAVDIVRHWQEL--GY-LIIYITGRPDMQ--Q---GRVLSWLSQHN-FPHGLVSFADGLSPGFLGHKASYLKSLIQD- 471 (559)
Q Consensus 402 ~~GA~elv~~l~~~--GY-~IIYLTaRp~~~--~---~~T~~WL~qhg-lP~G~L~lr~g~~~dp~~~K~~~L~~L~~~- 471 (559)
..++..+.+++.++ |+ +|.|+++.+... . +..+++|++++ +. +........++...+ ..+++++..
T Consensus 106 ~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~ 181 (272)
T cd06301 106 VVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEVLAKYPDIK---VVEEQTANWSRAEAM-DLMENWLSSG 181 (272)
T ss_pred HHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHHHHHCCCcE---EEecCCCCccHHHHH-HHHHHHHHhC
Confidence 45566777777776 65 899999876432 2 33466777777 32 111111122332222 344444322
Q ss_pred cCCcEEEEeCC--c-cchhHHHhcCCCCCcEEEEcCC
Q psy4654 472 HGVVIHAAYGS--N-KDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 472 ~~~~i~aafGN--~-~DV~aYr~vGI~~~~If~i~~~ 505 (559)
..+....+.++ + -.+.+.++.|+.+..|-+||-.
T Consensus 182 ~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d 218 (272)
T cd06301 182 GKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGID 218 (272)
T ss_pred CCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeC
Confidence 23344455555 3 4678888899997788888854
No 229
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=55.38 E-value=1.4e+02 Score=28.91 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCCc
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
..++..+.+++.++|+ +|.++++..... . +.-++++++++++........+ ..+++. ..+.++++++. +..
T Consensus 101 ~~~~~~~~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~-~~~ 177 (265)
T cd06299 101 QPGMTEAVSLLVALGHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLG-GYSQES-GYAGATKLLDQ-GAT 177 (265)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEec-CcchHH-HHHHHHHHHcC-CCC
Confidence 4566777888888887 899998876532 2 2346677888876554322211 112211 23345555432 233
Q ss_pred EEEEeCC--c-cchhHHHhcCCC-CCcEEEEc
Q psy4654 476 IHAAYGS--N-KDVSVYTSVGLK-PRSIYIVG 503 (559)
Q Consensus 476 i~aafGN--~-~DV~aYr~vGI~-~~~If~i~ 503 (559)
-+.+.++ + -.+.+.++.|+. |..+-++|
T Consensus 178 av~~~~d~~a~gv~~al~~~g~~vp~dv~v~g 209 (265)
T cd06299 178 AIIAGDSMMTIGAIRAIHDAGLVIGEDISLIG 209 (265)
T ss_pred EEEEcCcHHHHHHHHHHHHhCCCCCcceeEEE
Confidence 3344444 2 467788889986 34454544
No 230
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=55.28 E-value=49 Score=40.16 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCce---eEecC-------------------C-
Q psy4654 396 GRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGL---VSFAD-------------------G- 452 (559)
Q Consensus 396 g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~---L~lr~-------------------g- 452 (559)
-.|| ++++|.+.+..+++.|.+++-|||-....+...-.= -|+..+. +.+.+ +
T Consensus 544 ~~Dp-pr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~---~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~Vf 619 (917)
T COG0474 544 IEDP-PREDVKEAIEELREAGIKVWMITGDHVETAIAIAKE---CGIEAEAESALVIDGAELDALSDEELAELVEELSVF 619 (917)
T ss_pred ccCC-CCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH---cCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEE
Confidence 3565 899999999999999999999999876555433222 2332221 12110 0
Q ss_pred CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHhcC
Q psy4654 453 LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTSVG 493 (559)
Q Consensus 453 ~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~vG 493 (559)
-+-.| .+|...++.|.+ .-.+++.-|| .+|+-|.+++.
T Consensus 620 ARvsP-~qK~~IV~~lq~--~g~vVamtGDGvNDapALk~AD 658 (917)
T COG0474 620 ARVSP-EQKARIVEALQK--SGHVVAMTGDGVNDAPALKAAD 658 (917)
T ss_pred EEcCH-HHHHHHHHHHHh--CCCEEEEeCCCchhHHHHHhcC
Confidence 02234 679999999954 3568999999 89999999853
No 231
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=55.27 E-value=1.4e+02 Score=30.33 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch---hhHHH---HHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM---QQGRV---LSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~---~~~~T---~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
..++..++++|.++|| +|.|+++.... ..++. +++|+++|++..+.+...+. .+.+.- ...++.++.. +.
T Consensus 161 ~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~-~~~~~~-~~~~~~ll~~-~p 237 (329)
T TIGR01481 161 KQATKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGK-YSYDAG-YKAFAELKGS-LP 237 (329)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecC-CChHHH-HHHHHHHhCC-CC
Confidence 5677888899999998 68899875421 13333 56778899987653332211 122111 2344555432 22
Q ss_pred c-EEEEeCC-c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 V-IHAAYGS-N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~-i~aafGN-~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
. |++.-+. + -.+.+.++.|+. |..|-+||=.
T Consensus 238 ~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd 272 (329)
T TIGR01481 238 TAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSN 272 (329)
T ss_pred CEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 2 3332222 3 467788889985 5677777644
No 232
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=54.61 E-value=2.1e+02 Score=29.00 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--hh---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--QQ---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..++..+.++|.++|| +|.|+++.+.. .. +.-+++|+++|++...+...+ . +.+.- .+.++.++... ..
T Consensus 164 ~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~-~--~~~~~-~~~~~~~l~~~~~~ 239 (328)
T PRK11303 164 QDDAEMLAESLLKFPAESILLLGALPELSVSFEREQGFRQALKDDPREVHYLYANS-F--EREAG-AQLFEKWLETHPMP 239 (328)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCccccccHHHHHHHHHHHHHHcCCCceEEEeCC-C--ChHHH-HHHHHHHHcCCCCC
Confidence 4567788899999999 58899886543 22 334678888998643322211 1 11111 22345554321 22
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGK 504 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~ 504 (559)
.-+.+..+ + -.+.+.++.|+. |..|=++|=
T Consensus 240 ~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gf 273 (328)
T PRK11303 240 DALFTTSYTLLQGVLDVLLERPGELPSDLAIATF 273 (328)
T ss_pred CEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 22333333 2 345666788975 566666654
No 233
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=54.37 E-value=24 Score=30.33 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeE
Q psy4654 404 GAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVS 448 (559)
Q Consensus 404 GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~ 448 (559)
+++++++.+.+.||+|+=- ..|.++|++||++.-.+.
T Consensus 1 e~~~~a~~l~~lG~~i~AT--------~gTa~~L~~~Gi~~~~v~ 37 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYAT--------EGTAKFLKEHGIEVTEVV 37 (95)
T ss_dssp THHHHHHHHHHTTSEEEEE--------HHHHHHHHHTT--EEECC
T ss_pred CHHHHHHHHHHCCCEEEEC--------hHHHHHHHHcCCCceeee
Confidence 4789999999999987543 589999999999954443
No 234
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=54.34 E-value=1.5e+02 Score=30.30 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc-cCCc
Q psy4654 403 AGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD-HGVV 475 (559)
Q Consensus 403 ~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~-~~~~ 475 (559)
.+...+.+++.++|| +|.++++.+... . +.-+++|+++|++........+ ..+++. -.+.++.++.. ....
T Consensus 164 ~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~ 241 (341)
T PRK10703 164 EGGYLAGRYLIERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQG-DFEPES-GYEAMQQILSQKHRPT 241 (341)
T ss_pred HHHHHHHHHHHHCCCCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeC-CCCHHH-HHHHHHHHHhCCCCCC
Confidence 445677788888898 688888765432 2 2335678889987654222111 122221 12344454432 1233
Q ss_pred EEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 476 IHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 476 i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
-+.+.++ + -.+.+.++.|+. |.++-+||=.
T Consensus 242 ai~~~nd~~a~g~~~al~~~g~~ip~dv~vvgfD 275 (341)
T PRK10703 242 AVFCGGDIMAMGAICAADEMGLRVPQDISVIGYD 275 (341)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 3333444 2 466788888985 5677777654
No 235
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.11 E-value=2e+02 Score=28.15 Aligned_cols=85 Identities=5% Similarity=0.008 Sum_probs=45.9
Q ss_pred eEEEEecCCch--h---hHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc-cCC-cEEEEeCC-c-cchhH
Q psy4654 418 LIIYITGRPDM--Q---QGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD-HGV-VIHAAYGS-N-KDVSV 488 (559)
Q Consensus 418 ~IIYLTaRp~~--~---~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~-~~~-~i~aafGN-~-~DV~a 488 (559)
+|.++++-+.. . .+..+++|++++++...+..... .+++.- ...+++++.. ... -|++..+. + -.+.+
T Consensus 127 ~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 203 (277)
T cd06319 127 KVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGIRQQKD--FSYQET-FDYTNDLLTANPDIRAIWLQGSDRYQGALDA 203 (277)
T ss_pred cEEEEeccCCCccHHHHHHHHHHHHHhcCCceEeeccCCC--CCHHHH-HHHHHHHHHhCCCCCEEEECCCccchHHHHH
Confidence 67788764321 1 23347788899887443222211 122221 2234444332 223 24444444 4 47788
Q ss_pred HHhcCCCCCcEEEEcCCC
Q psy4654 489 YTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 489 Yr~vGI~~~~If~i~~~~ 506 (559)
.++.|+. .+|.+||-.+
T Consensus 204 l~~~g~~-~di~vvg~d~ 220 (277)
T cd06319 204 IATAGKT-GKVLLICFDA 220 (277)
T ss_pred HHHcCCC-CCEEEEEcCC
Confidence 8999998 7888887543
No 236
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=53.71 E-value=21 Score=30.26 Aligned_cols=33 Identities=24% Similarity=0.546 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCc
Q psy4654 405 AVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHG 445 (559)
Q Consensus 405 A~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G 445 (559)
+.++++.+.+.||+|+ -|. .|.+||+++|++.-
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~~~ 34 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG-------GTAKFLREAGLPVK 34 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHCCCcce
Confidence 5688999999999984 543 68999999998753
No 237
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=51.49 E-value=7.6 Score=43.82 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=47.4
Q ss_pred HHHHCCCeEEEEecCCchhhHHHHHHHhhC-CCCC---ceeEe-cCC-----CC-CCh--hhHHHHHHHHHhhccCCcEE
Q psy4654 411 HWQELGYLIIYITGRPDMQQGRVLSWLSQH-NFPH---GLVSF-ADG-----LS-PGF--LGHKASYLKSLIQDHGVVIH 477 (559)
Q Consensus 411 ~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh-glP~---G~L~l-r~g-----~~-~dp--~~~K~~~L~~L~~~~~~~i~ 477 (559)
.+++.|+. +.+||-++.+.+ -|++++ |+.. -.+.. .+| +. .++ -.-|...+++... .... .
T Consensus 118 ~~~~~g~~-vvVSASp~~~Ve---pfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g-~~~~-~ 191 (497)
T PLN02177 118 VFNSFGKR-YIITASPRIMVE---PFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG-DALP-D 191 (497)
T ss_pred HHHhCCCE-EEEECCcHHHHH---HHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC-CCCc-e
Confidence 44567875 899998765443 666553 5541 11222 111 11 111 1348887876532 2222 3
Q ss_pred EEeCC-ccchhHHHhcCCCCCcEEEEcC
Q psy4654 478 AAYGS-NKDVSVYTSVGLKPRSIYIVGK 504 (559)
Q Consensus 478 aafGN-~~DV~aYr~vGI~~~~If~i~~ 504 (559)
.+||| ..|......++ +-|.|++
T Consensus 192 ~aYgDS~sD~plL~~a~----e~y~V~~ 215 (497)
T PLN02177 192 LGLGDRETDHDFMSICK----EGYMVPR 215 (497)
T ss_pred EEEECCccHHHHHHhCC----ccEEeCC
Confidence 79999 68999988766 3466666
No 238
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=51.30 E-value=1.8e+02 Score=29.75 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--hhHHH---HHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--QQGRV---LSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~T---~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..++..+++++.++|| +|.|+++.+.. ..++. ++.++++|+.....+..+....+ . -.+.++++++.. ..
T Consensus 159 ~~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~ 235 (327)
T PRK10339 159 ARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSS--S-GYELAKQMLAREDYP 235 (327)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeCCccccchhhHHHHHHHHHHHHcCCCChhheeecCcChh--H-HHHHHHHHHhCCCCC
Confidence 5677888999999999 89999886542 22223 34566788743322222221111 1 123445554321 12
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
.-+.+.++ + --+.+.++.|+. |..|-+||=.+
T Consensus 236 ~ai~~~~D~~A~g~~~al~~~g~~vP~di~vigfD~ 271 (327)
T PRK10339 236 KALFVASDSIAIGVLRAIHERGLNIPQDISLISVND 271 (327)
T ss_pred CEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCC
Confidence 23333444 3 466788889986 67788887543
No 239
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=50.78 E-value=2.8e+02 Score=28.00 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHHC-C-C-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeE-ecCCCCCChhhHHHHHHHHHhhc-
Q psy4654 402 RAGAVDIVRHWQEL-G-Y-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVS-FADGLSPGFLGHKASYLKSLIQD- 471 (559)
Q Consensus 402 ~~GA~elv~~l~~~-G-Y-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~-lr~g~~~dp~~~K~~~L~~L~~~- 471 (559)
..+...+.+.+.++ | + +|.++++.... ..++ -++.|+++|.|...+. ...+ ..+++.-+ +.+++++..
T Consensus 106 ~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~ 183 (298)
T cd06302 106 KAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKAYQKEKYYPMLELVDRQYG-DDDADKSY-QTAQELLKAY 183 (298)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHHHHhhcCCCCeEEeCcccC-CCCHHHHH-HHHHHHHHhC
Confidence 34456667777777 4 3 89999886542 2222 3566778886533321 1111 22333222 334444332
Q ss_pred cCCcEEEEeCC--c-cchhHHHhcCCCCCcEEEEcCC
Q psy4654 472 HGVVIHAAYGS--N-KDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 472 ~~~~i~aafGN--~-~DV~aYr~vGI~~~~If~i~~~ 505 (559)
.....+.+.++ + ..+.+.++.|+. ..|.+||-.
T Consensus 184 ~~~~ai~~~~D~~A~g~~~al~~~g~~-~dv~vvG~D 219 (298)
T cd06302 184 PDLKGIIGPTSVGIPGAARAVEEAGLK-GKVAVTGLG 219 (298)
T ss_pred CCceEEEECCCcchhHHHHHHHhcCCC-CCEEEEEeC
Confidence 23334444444 3 577888889997 788888754
No 240
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.76 E-value=2.2e+02 Score=27.66 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--hh---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc-cCC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--QQ---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD-HGV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~-~~~ 474 (559)
..++..+.+.|.++|| +|.|+++.+.. .. +..++++++++++........+ ..+++.- ...+++++.. ...
T Consensus 99 ~~ag~~a~~~L~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~ 176 (265)
T cd06285 99 VLGGRLATRHLLDLGHRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYS-GFDIEGG-EAAAEKLLRSDSPP 176 (265)
T ss_pred HHHHHHHHHHHHHCCCccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC-CCCHHHH-HHHHHHHHcCCCCC
Confidence 5666788899999998 67888876532 22 2235677788987644222111 1222221 2234555432 123
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
.-+.+.++ + -.+.+.++.|+. |..|-+|+-.+
T Consensus 177 ~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 212 (265)
T cd06285 177 TAIFAVNDFAAIGVMGAARDRGLRVPDDVALVGYND 212 (265)
T ss_pred CEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecC
Confidence 34444455 2 467888889985 57777777543
No 241
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=49.64 E-value=2.7e+02 Score=27.48 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=51.6
Q ss_pred HHHHHHHCCC---eEEEEec-CCc--hhhHHH---HHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc-cCCc--
Q psy4654 408 IVRHWQELGY---LIIYITG-RPD--MQQGRV---LSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD-HGVV-- 475 (559)
Q Consensus 408 lv~~l~~~GY---~IIYLTa-Rp~--~~~~~T---~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~-~~~~-- 475 (559)
+++.+.++|+ +|.|+.+ .+. ...+++ ++.|+++|+|...++-......+.+.-+ ..+.+++.. ....
T Consensus 118 l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 196 (289)
T cd01540 118 IADEMKKRGWDPKEVGALRITYDELDTAKPRTDGALEALKAPGFPEANIFQAPQKTTDTEGAF-DAAASTLTKNPNVKNW 196 (289)
T ss_pred HHHHHHhhcCCCcceEEEEecCCCCcchhhHHHHHHHHHhcCCCCcceEecccccCcchhhHH-HHHHHHHHhCCCcCee
Confidence 4455556787 7888753 221 233444 5566678888655442221112232222 233444321 2233
Q ss_pred EEEEeCC--c-cchhHHHhcCCCCCcEEEEcC
Q psy4654 476 IHAAYGS--N-KDVSVYTSVGLKPRSIYIVGK 504 (559)
Q Consensus 476 i~aafGN--~-~DV~aYr~vGI~~~~If~i~~ 504 (559)
.+.+.++ + -.+.+.++.|+.+..|-+||-
T Consensus 197 ~i~~~~d~~a~g~~~al~~~g~~~~di~vig~ 228 (289)
T cd01540 197 IIYGLNDETVLGAVRATEQSGIAAADVIGVGI 228 (289)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCCcceEEEec
Confidence 3444554 3 466788889999878888774
No 242
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=49.49 E-value=53 Score=36.09 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEe--cCCch--h---------hHHHHHHHhh-----------------CCCCCceeEecCC
Q psy4654 403 AGAVDIVRHWQELGYLIIYIT--GRPDM--Q---------QGRVLSWLSQ-----------------HNFPHGLVSFADG 452 (559)
Q Consensus 403 ~GA~elv~~l~~~GY~IIYLT--aRp~~--~---------~~~T~~WL~q-----------------hglP~G~L~lr~g 452 (559)
..++..++.+.++|-++|.+| |||.+ . ++...+-|.+ ..+..|.++|.++
T Consensus 34 ~~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLEN 113 (384)
T PF00162_consen 34 RAALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDDCIGEEAEEAIESLKPGEILLLEN 113 (384)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccccCCHHHHHHHhccCCCCEEEEee
Confidence 347889999999999999998 78853 1 1223333321 2478999999887
Q ss_pred CCCChh------hHHHHHHHHHhhccCCcEEEEeCCcc
Q psy4654 453 LSPGFL------GHKASYLKSLIQDHGVVIHAAYGSNK 484 (559)
Q Consensus 453 ~~~dp~------~~K~~~L~~L~~~~~~~i~aafGN~~ 484 (559)
.+-.++ ..+..+.+.|.+-+++++-+|||.+.
T Consensus 114 lRf~~eE~~~~~~~~~~f~~~LA~l~DvyVNDAFg~aH 151 (384)
T PF00162_consen 114 LRFYPEEEGKKEKNDTEFARKLASLADVYVNDAFGTAH 151 (384)
T ss_dssp GGGSTTTTSEEHHTHHHHHHHHHTT-SEEEEESGGGTT
T ss_pred eccccccccccccccHHHHHHHHHhCCEEEEcCccchh
Confidence 654443 34777888888778899999999853
No 243
>KOG0202|consensus
Probab=49.24 E-value=1e+02 Score=37.26 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCcee-----EecC-----------------C--
Q psy4654 397 RDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLV-----SFAD-----------------G-- 452 (559)
Q Consensus 397 ~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L-----~lr~-----------------g-- 452 (559)
.|| ||+++.+-+..+++.|-.++-+||-....+...-+ +-|++...- .+.+ +
T Consensus 582 ~DP-PR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r---~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~v 657 (972)
T KOG0202|consen 582 LDP-PRPEVADAIELCRQAGIRVIMITGDNKETAEAIAR---EIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLV 657 (972)
T ss_pred cCC-CchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHH---HhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceE
Confidence 366 89999999999999999999999998776654422 223332211 0100 0
Q ss_pred -CCCChhhHHHHHHHHHhhccCCcEEEEeCC-ccchhHHHh--cCCCCCcEEEEcCCCccccccceecchhHHHHHHHHh
Q psy4654 453 -LSPGFLGHKASYLKSLIQDHGVVIHAAYGS-NKDVSVYTS--VGLKPRSIYIVGKVSKKHQSQATVLSDGYAAHLTALQ 528 (559)
Q Consensus 453 -~~~dp~~~K~~~L~~L~~~~~~~i~aafGN-~~DV~aYr~--vGI~~~~If~i~~~~~~~~~~~~~~~~~Y~~hL~~l~ 528 (559)
.+-.| .+|....+.|.+ .-.|.+-=|| -+|.-|.+. +||.-.+. |..--|.+..--...|.++.-+++++
T Consensus 658 FaR~~P-~HK~kIVeaLq~--~geivAMTGDGVNDApALK~AdIGIAMG~~---GTdVaKeAsDMVL~DDnFstIvaAVE 731 (972)
T KOG0202|consen 658 FARAEP-QHKLKIVEALQS--RGEVVAMTGDGVNDAPALKKADIGIAMGIS---GTDVAKEASDMVLADDNFSTIVAAVE 731 (972)
T ss_pred EEecCc-hhHHHHHHHHHh--cCCEEEecCCCccchhhhhhcccceeecCC---ccHhhHhhhhcEEecCcHHHHHHHHH
Confidence 12334 679999999954 5579999999 799888876 45543322 22212222222234788999999988
Q ss_pred hc
Q psy4654 529 QH 530 (559)
Q Consensus 529 ~~ 530 (559)
++
T Consensus 732 EG 733 (972)
T KOG0202|consen 732 EG 733 (972)
T ss_pred Hh
Confidence 76
No 244
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=48.93 E-value=2.5e+02 Score=27.67 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=63.9
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchh--------h---HHHHHHHhhCCCCC
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQ--------Q---GRVLSWLSQHNFPH 444 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~--------~---~~T~~WL~qhglP~ 444 (559)
+.++|++|-++.-..+ +..| -..++....++|.++.-+|.|+++..... . +.-++.++++|++.
T Consensus 78 ~iPvv~~~~~~~~~~~---v~~d--~~~~g~~a~~~L~~~~~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~ 152 (269)
T cd06297 78 ERPVVLVDAENPRFDS---FYLD--NRLGGRLAGAYLADFPGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPF 152 (269)
T ss_pred CCCEEEEccCCCCCCE---EEEC--cHHHHHHHHHHHHHhCCceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCC
Confidence 4456666654321111 2233 35566677777777744788998865432 2 22356777888875
Q ss_pred ce-eEecCCCCCChhhHHHHHHHHHhhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 445 GL-VSFADGLSPGFLGHKASYLKSLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 445 G~-L~lr~g~~~dp~~~K~~~L~~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
.. +.... ..+.... ...++.+++. ....-+.+.++ + -.+.+.++.|+. |.+|-+||-.+
T Consensus 153 ~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vP~di~vvg~d~ 217 (269)
T cd06297 153 SPDLLAIT--DHSEEGG-RLAMRHLLEKASPPLAVFASADQQALGALQEAVELGLTVGEDVRVVGFDD 217 (269)
T ss_pred ChhhEEeC--CCChhhH-HHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 44 22222 1122122 2345555432 12223333333 2 466678888975 56777777543
No 245
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=48.47 E-value=51 Score=29.62 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=52.1
Q ss_pred cceeEEecCCceeEEEeee-cCCCcceeeeEeEEEEecCCCCcEEEEEE--EEeCCCccEEEecCCCCcCCCCccceEEE
Q psy4654 282 ANDVIVKEGLPQTLVARFM-YGPFDMFTLTVDVHLIKEPPSGEWVLMST--EVTDKTGRVSYTLPEDHKLSYGMYPVKMV 358 (559)
Q Consensus 282 ~~d~i~~~~~~~~~~~~F~-yg~~d~~~l~vdi~~~~~~~~g~w~~~~t--~~t~s~gri~~~~p~~~~L~~G~y~vkmv 358 (559)
..|..++.|++..|.|.-- ...-|- .+=|+.-. ..+|+|..+.. ..-|+..+|.|.||.+ |..|.|.+...
T Consensus 11 ~~dg~lt~G~~~~I~G~~LKi~g~d~---~~Gv~l~~-~~~g~~~~v~~~~i~~N~ps~l~~~lPa~--L~~G~Y~l~V~ 84 (102)
T PF14734_consen 11 SKDGTLTPGGPVRITGSNLKIDGDDP---SQGVFLVS-DDEGTETKVPCSSIVRNKPSRLIFILPAD--LAAGEYTLEVR 84 (102)
T ss_pred cccccCcCCCeEEEEeeEEEEecCCC---ceEEEEEc-CCCCceEEecHHHeEeCCCcEEEEECcCc--cCceEEEEEEE
Confidence 3456688888888888531 111110 15555544 35789999986 7899999999999988 89999998765
Q ss_pred Ec
Q psy4654 359 VR 360 (559)
Q Consensus 359 V~ 360 (559)
=+
T Consensus 85 Tq 86 (102)
T PF14734_consen 85 TQ 86 (102)
T ss_pred EE
Confidence 43
No 246
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In some proteins it is found in either one or two copies, N-terminal to the DOMON domain. Proteins with the DM13 and DOMON domains include Skeletor, which is part of a macromolecular complex that forms the spindle matrix []. The DM13 domain is also a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins []. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [].
Probab=47.76 E-value=71 Score=28.29 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=45.5
Q ss_pred CCCcccceeEEecCCceeEEEeeecCCCcceeeeEeEEEEecCC-----------CCcEEEEEEEEeCCCccEEEecCCC
Q psy4654 277 TANHRANDVIVKEGLPQTLVARFMYGPFDMFTLTVDVHLIKEPP-----------SGEWVLMSTEVTDKTGRVSYTLPED 345 (559)
Q Consensus 277 ~~~Hr~~d~i~~~~~~~~~~~~F~yg~~d~~~l~vdi~~~~~~~-----------~g~w~~~~t~~t~s~gri~~~~p~~ 345 (559)
+..|.+.-.|...++...++=.|.|-.-.= =|+|++..+. .++...++..... .|+++|.||.+
T Consensus 8 ~~~h~vsG~v~i~d~~t~~i~~f~f~~~~g----PD~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~LP~~ 82 (108)
T PF10517_consen 8 SGGHGVSGTVTIVDGKTFLIFNFNFDGSQG----PDLYFWLGKGPSPTPDGFIIPSDEYVSLGPLKSY-NGDQTYTLPAG 82 (108)
T ss_pred CCCceeeEEEEEeCCCeEEEecccccCCCC----CCEEEEEECCCCCCCcccccccccceeeeccccc-CCCEEEECCCC
Confidence 345888888888888888877777755210 2566666433 3566666666566 79999999988
Q ss_pred Cc
Q psy4654 346 HK 347 (559)
Q Consensus 346 ~~ 347 (559)
..
T Consensus 83 ~~ 84 (108)
T PF10517_consen 83 VD 84 (108)
T ss_pred CC
Confidence 54
No 247
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=47.75 E-value=2.2e+02 Score=28.09 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=57.6
Q ss_pred cCCCcccchhHHHHHHHHHHCCC------eEEEEecCCch--hhHHH---HHHHhhCCCCCceeEecCCCCCChhhHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY------LIIYITGRPDM--QQGRV---LSWLSQHNFPHGLVSFADGLSPGFLGHKAS 463 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY------~IIYLTaRp~~--~~~~T---~~WL~qhglP~G~L~lr~g~~~dp~~~K~~ 463 (559)
++.|. ..+...+.+.+.++|+ +|.|+++.... ..+++ ++.|++++++...+.... .+.+ .-..
T Consensus 100 V~~d~--~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ 173 (268)
T cd06306 100 VGVSW--YEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEISAIKYGD---TGKE-VQRK 173 (268)
T ss_pred ecCCh--HHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEeeeccCC---ccHH-HHHH
Confidence 45553 4556677777877774 89999987653 23333 556677887643321111 1221 1223
Q ss_pred HHHHHhhc-cCCcEEEEeCC-c-cchhHHHhcCCCCCcEEEEcCC
Q psy4654 464 YLKSLIQD-HGVVIHAAYGS-N-KDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 464 ~L~~L~~~-~~~~i~aafGN-~-~DV~aYr~vGI~~~~If~i~~~ 505 (559)
.++++++. .....+.+.+. + -.+.+.++.|+ +..|.+|+-.
T Consensus 174 ~~~~~l~~~~~~~~i~~~d~~a~~~~~~l~~~g~-p~di~vig~~ 217 (268)
T cd06306 174 LVEEALEAHPDIDYIVGSAVAAEAAVGILRQRGL-TDQIKIVSTY 217 (268)
T ss_pred HHHHHHHhCCCcCEEeecchhhhHHHHHHHhcCC-CCCeEEEecC
Confidence 44554432 12222333333 2 35666788999 6789898854
No 248
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.73 E-value=2.8e+02 Score=28.08 Aligned_cols=100 Identities=14% Similarity=0.050 Sum_probs=55.7
Q ss_pred chhHHHHHHHHHHCCCe---------EEEEecCCch--hhHHH---HHHHhhCC-CCCceeEecCCCCCChhhHHHHHHH
Q psy4654 402 RAGAVDIVRHWQELGYL---------IIYITGRPDM--QQGRV---LSWLSQHN-FPHGLVSFADGLSPGFLGHKASYLK 466 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~---------IIYLTaRp~~--~~~~T---~~WL~qhg-lP~G~L~lr~g~~~dp~~~K~~~L~ 466 (559)
..+...+.+++.++||+ |+|+++.+.. ..++. ++.|++++ ++...+ ... ..+...-+ .+++
T Consensus 119 ~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~g~~~~~~~-~~~--~~~~~~~~-~~~~ 194 (305)
T cd06324 119 EEAGYLMAEALISQARSVQAPGGRIDLLAISGDPTTPAAILREAGLRRALAEHPDVRLRQV-VYA--GWSEDEAY-EQAE 194 (305)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCChHHHHHHHHHHHHHHHCCCceEeee-ecC--CCCHHHHH-HHHH
Confidence 56667778888888886 8899876542 22333 45566776 322111 111 11222222 2444
Q ss_pred HHhhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 467 SLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 467 ~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
++++. ..+..+.+.++ + -.+.+.++.|+. |.+|.+||=.
T Consensus 195 ~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 195 NLLKRYPDVRLIWAANDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHCCCccEEEECCchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 54432 22333334444 2 477888899986 5688888854
No 249
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=47.65 E-value=38 Score=30.10 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEe
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~l 449 (559)
.+.+.++++.+.+.||+| |-| ..|-+||+++|++.-.+.-
T Consensus 11 K~~~~~~a~~l~~~G~~i-~AT-------~gTa~~L~~~Gi~~~~v~~ 50 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPL-FAT-------GGTSRVLADAGIPVRAVSK 50 (112)
T ss_pred HHHHHHHHHHHHHCCCEE-EEC-------cHHHHHHHHcCCceEEEEe
Confidence 456889999999999998 465 4799999999998766643
No 250
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=47.02 E-value=2.7e+02 Score=26.80 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=56.8
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCch---hhHHH---HHHHhhCCCCCceeEecCCCCCChhhHHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDM---QQGRV---LSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKS 467 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~---~~~~T---~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~ 467 (559)
++.|- ..+...+.+.+.++|+ +|.++++.+.. ...+. ++++++++++......... ..+.... ...+++
T Consensus 96 v~~d~--~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 171 (267)
T cd06283 96 VTLDN--YEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEID-DEDADEL-DERLRQ 171 (267)
T ss_pred EEecc--HHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEec-ccchHHH-HHHHHH
Confidence 45552 4566788888889997 78899887652 22333 5566778865443222111 1111111 223444
Q ss_pred Hhhcc-CCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcC
Q psy4654 468 LIQDH-GVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGK 504 (559)
Q Consensus 468 L~~~~-~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~ 504 (559)
++... ...-+.+.++ + -.+.+.++.|+. +.+|-+++-
T Consensus 172 ~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~ 213 (267)
T cd06283 172 LLNKPKKKTAIFAANGLILLEVLKALKELGIRIPEDVGLIGF 213 (267)
T ss_pred HHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEEe
Confidence 43321 2333333344 3 456777889986 456655553
No 251
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=46.46 E-value=32 Score=39.10 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeE
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVS 448 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~ 448 (559)
..+++++.+.|.+.||+|+ -| ..|.+||+++|+|.-.+.
T Consensus 10 K~~iv~lAk~L~~lGfeIi-AT-------gGTak~L~e~GI~v~~Vs 48 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-ST-------GGTAKLLAEAGVPVTEVS 48 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-Ee-------chHHHHHHHCCCeEEEee
Confidence 3578999999999999996 44 369999999999876654
No 252
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=46.39 E-value=1.4e+02 Score=27.97 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=49.6
Q ss_pred ecCCceeEEEeeecCCCcceeee-EeEEEEecC--------C--CCcEEEEEEEEeCCCccEEEecCCCCcCCCCccc--
Q psy4654 288 KEGLPQTLVARFMYGPFDMFTLT-VDVHLIKEP--------P--SGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYP-- 354 (559)
Q Consensus 288 ~~~~~~~~~~~F~yg~~d~~~l~-vdi~~~~~~--------~--~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~-- 354 (559)
..|.+-+|.|+..=+--..+.-. |||.=+... . ..+....|..+||.+|+..|.- +.+|.|+
T Consensus 7 ~~G~~l~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~t-----i~Pg~Y~~~ 81 (146)
T cd00421 7 APGEPLTLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRT-----IKPGPYPIG 81 (146)
T ss_pred CCCCEEEEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEE-----EcCCCCCCC
Confidence 45778888888765422222222 666543321 0 2355678999999999998873 7899999
Q ss_pred ----eEEEEc--CCceeEEEEEEe
Q psy4654 355 ----VKMVVR--GDHTSVDFYLAV 372 (559)
Q Consensus 355 ----vkmvV~--gd~t~~~~~i~v 372 (559)
|+|.|. |-.......||+
T Consensus 82 R~~HiH~~V~~~g~~~~l~Tqlyf 105 (146)
T cd00421 82 RPPHIHFKVFAPGYNRRLTTQLYF 105 (146)
T ss_pred CCCEEEEEEECCCccCcEEEEEEe
Confidence 666664 221344455544
No 253
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=46.34 E-value=2.1e+02 Score=27.74 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=64.6
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCc--hhh---HHHHHHHhhCCCCCce-eE
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPD--MQQ---GRVLSWLSQHNFPHGL-VS 448 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~--~~~---~~T~~WL~qhglP~G~-L~ 448 (559)
+.++|.+|-+-. .....++.| -..++..+.+.+.++|| +|.++++.+. ... +.-++++++++++... ++
T Consensus 74 ~ipvV~~~~~~~--~~~~~V~~d--~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~ 149 (261)
T cd06272 74 AIPVVSYGVDYD--LKYPIVNVD--NEKAMELAVLYLAEKGHKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHI 149 (261)
T ss_pred CCCEEEEcccCC--CCCCEEEEC--hHHHHHHHHHHHHHcCchhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHe
Confidence 445665554311 111224455 35567788888888998 6778876654 222 2236678888875433 22
Q ss_pred ecCCCCCChhhHHHHHHHHHhhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 449 FADGLSPGFLGHKASYLKSLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 449 lr~g~~~dp~~~K~~~L~~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
.... .+.+.-+ ..++.++.. .....+.+.++ + -.+.+.++.|+. |.+|.+++-.+
T Consensus 150 ~~~~--~~~~~~~-~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~ 209 (261)
T cd06272 150 DVDG--LSAEGGD-NAAKKLLKESDLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDN 209 (261)
T ss_pred eeCC--CCHHHHH-HHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEeeCC
Confidence 2211 1111112 233444332 11233333333 3 455777889986 56777777543
No 254
>KOG2134|consensus
Probab=46.33 E-value=22 Score=39.15 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=59.5
Q ss_pred EEeeCCCCeeEEEeeccceecccc----ccCC-Ccc-cchhHHHHHHHHHHCCCeEEEEecCCch---------hhHHHH
Q psy4654 370 LAVVPPRTEVVVFSVDGSFTASVS----VTGR-DPK-VRAGAVDIVRHWQELGYLIIYITGRPDM---------QQGRVL 434 (559)
Q Consensus 370 i~v~~~~~k~VIfDIDGTlt~sd~----~~g~-D~~-~~~GA~elv~~l~~~GY~IIYLTaRp~~---------~~~~T~ 434 (559)
.-.+..+-|.+.||.||||.+.++ ..|. ||. ..+.+..=++.+...||.|++-|--..- .....+
T Consensus 68 ~~~v~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~ 147 (422)
T KOG2134|consen 68 LPKVNGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIK 147 (422)
T ss_pred ccccCCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHH
Confidence 445677889999999999988875 2333 432 3555667788888999999998754321 122334
Q ss_pred HHHhhCCCCCceeEe-cCCCCCChhhHHHHHHHH
Q psy4654 435 SWLSQHNFPHGLVSF-ADGLSPGFLGHKASYLKS 467 (559)
Q Consensus 435 ~WL~qhglP~G~L~l-r~g~~~dp~~~K~~~L~~ 467 (559)
+-++.-++|.--+.- ..+.-+.|..-=.+++++
T Consensus 148 ~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~ 181 (422)
T KOG2134|consen 148 AIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKR 181 (422)
T ss_pred HHHHhcCCceEEeeeccCCcccCcchhHHHHHHH
Confidence 555666777543221 123344554434444443
No 255
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=46.20 E-value=1.7e+02 Score=28.71 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=57.3
Q ss_pred cCCCcccchhHHHHHHHHHHC---CCeEEEEecCCch--hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQEL---GYLIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLK 466 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~---GY~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~ 466 (559)
++.|. ..+.....+++.++ |++++++++.+.. ..++ -++.|+++|++...+... ..+...- ...++
T Consensus 98 V~~D~--~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~ 171 (271)
T cd06314 98 IGTDN--YAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVDTRGD---EEDFAKA-KSNAE 171 (271)
T ss_pred EccCh--HHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEEEecC---ccCHHHH-HHHHH
Confidence 34453 55666777777664 8999988886542 2223 356667787754332221 1111111 12344
Q ss_pred HHhhc-cCCc-EEEEeCC-c-cchhHHHhcCCCCCcEEEEcCCC
Q psy4654 467 SLIQD-HGVV-IHAAYGS-N-KDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 467 ~L~~~-~~~~-i~aafGN-~-~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
.++.. .... |++..+. + --+.+.++.|+. ..|.+||-.+
T Consensus 172 ~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~-~di~vig~d~ 214 (271)
T cd06314 172 DALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKL-GKVKIVGFDE 214 (271)
T ss_pred HHHHhCCCccEEEecCCccHHHHHHHHHHcCCC-CceEEEEeCC
Confidence 44332 1222 3333343 2 366788889998 7888888654
No 256
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=44.57 E-value=2e+02 Score=24.45 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=30.3
Q ss_pred eEEEEecCCCCcEEEEEEE-EeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 312 DVHLIKEPPSGEWVLMSTE-VTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 312 di~~~~~~~~g~w~~~~t~-~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
++.+...-++|.=+.-.+. .++..|..+++++-+.....|.|.|+....
T Consensus 37 ~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 37 PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 3333333237766667777 788999886555555558999999999995
No 257
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=44.20 E-value=3e+02 Score=26.55 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=63.5
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeEe
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~l 449 (559)
+-++|.+|-+ .......++.|. ...+..+.+.+.++|+ +|.|+++.... ...+ -+++|++++++.-..+.
T Consensus 79 ~ipvv~~~~~--~~~~~~~v~~d~--~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~ 154 (264)
T cd01574 79 DVPVVFVDGS--PSPRVSTVSVDQ--EGGARLATEHLLELGHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPVLE 154 (264)
T ss_pred CCCEEEEecc--CCCCCCEEEeCc--HHHHHHHHHHHHHCCCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCcceeee
Confidence 4456666543 111112355553 4556677788888887 78899887542 2223 34555667776433322
Q ss_pred cCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 450 ADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 450 r~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
.+ .+.+. ....++.++.........+.++ + ..+.+.++.|+. +..|.+|+-.+
T Consensus 155 ~~---~~~~~-~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~~~~~~g~~ip~~i~ii~~d~ 211 (264)
T cd01574 155 GD---WSAES-GYRAGRELLREGDPTAVFAANDQMALGVLRALHELGLRVPDDVSVVGFDD 211 (264)
T ss_pred cC---CCHHH-HHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceEEecccC
Confidence 21 12211 1233444433222222333333 2 456788888974 55777776543
No 258
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=43.79 E-value=97 Score=24.56 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.9
Q ss_pred EEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 329 TEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 329 t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
+..||++|.+.|.- |.+|.|.|+.+..
T Consensus 20 ~~~Td~~G~~~f~~-----L~~G~Y~l~E~~a 46 (70)
T PF05738_consen 20 TVTTDENGKYTFKN-----LPPGTYTLKETKA 46 (70)
T ss_dssp EEEGGTTSEEEEEE-----EESEEEEEEEEET
T ss_pred EEEECCCCEEEEee-----cCCeEEEEEEEEC
Confidence 78999999999984 7889999999873
No 259
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=43.75 E-value=3.1e+02 Score=26.52 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=65.3
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCcee-E
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLV-S 448 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L-~ 448 (559)
+.++|.+|-+-.- .....++.| .+.++....+.+.++|+ +|.++++.+... . +..++++++++++.... .
T Consensus 80 ~ipvv~i~~~~~~-~~~~~V~~d--~~~~g~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~ 156 (270)
T cd01545 80 GVPYVRIAPGTPD-PDSPCVRID--DRAAAREMTRHLIDLGHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELV 156 (270)
T ss_pred CCCEEEEecCCCC-CCCCeEEec--cHHHHHHHHHHHHHCCCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhE
Confidence 4455655543211 111224455 35666777788888888 788898766432 2 23466778888765322 2
Q ss_pred ecCCCCCChhhHHHHHHHHHhhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 449 FADGLSPGFLGHKASYLKSLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 449 lr~g~~~dp~~~K~~~L~~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
.......+. .+ +.+++++.. .+.....+.++ + .-+.+.++.|+. +.+|.+||-..
T Consensus 157 ~~~~~~~~~-~~--~~~~~~l~~~~~~~~i~~~~d~~a~~~~~~~~~~g~~~p~~i~vig~d~ 216 (270)
T cd01545 157 AQGDFTFES-GL--EAAEALLALPDRPTAIFASNDDMAAGVLAVAHRRGLRVPDDLSVVGFDD 216 (270)
T ss_pred EeCCCChhh-HH--HHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 222111111 11 334454432 12332333333 2 567788889985 55787776443
No 260
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=43.38 E-value=3.1e+02 Score=26.62 Aligned_cols=102 Identities=21% Similarity=0.227 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..++..+.+.+.++|| +|.|+++.+.. ..++ -+++|++++++........+ ..+....+ ..++++++.. ..
T Consensus 102 ~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~ 179 (269)
T cd06275 102 EEGGYLATRHLIELGHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEG-DFECEGGY-EAMQRLLAQPKRP 179 (269)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccC-CCChHHHH-HHHHHHHcCCCCC
Confidence 4556667788888997 78889887653 2223 35677788876543211111 12222222 2344443321 22
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.-+.+.++ + -.+.+.++.|+. |..|-++|-.
T Consensus 180 ~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vvg~d 214 (269)
T cd06275 180 TAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYD 214 (269)
T ss_pred cEEEECChHHHHHHHHHHHHcCCCCCcceEEEEeC
Confidence 22333333 2 456677888986 5566666643
No 261
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=43.33 E-value=2.9e+02 Score=26.66 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=60.9
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCc--hhhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPD--MQQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSL 468 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~--~~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L 468 (559)
++.| -+.++..+.+.+.++|| +|.|+++.+. ....+ -+++|++++++........+. .++.. -...++.+
T Consensus 96 v~~d--~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 171 (268)
T cd01575 96 VGFS--HAEAGRAMARHLLARGYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEP-SSFAL-GRELLAEL 171 (268)
T ss_pred EEeC--cHHHHHHHHHHHHHCCCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccC-CCHHH-HHHHHHHH
Confidence 3445 35667778888988898 5889988764 22233 356777888755443332211 22211 12334444
Q ss_pred hhcc-CCc-EEEEeCC-c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 469 IQDH-GVV-IHAAYGS-N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 469 ~~~~-~~~-i~aafGN-~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
+... ... |++.-+. + ..+.++++.|+. +.+|-+|+-.+
T Consensus 172 l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d~ 214 (268)
T cd01575 172 LARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGD 214 (268)
T ss_pred HhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecCC
Confidence 4321 222 3333333 2 568888889985 67787777553
No 262
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=43.14 E-value=2.4e+02 Score=28.54 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHCCCeEEEEec------CCc--------hhh--------------HHHHHHHhhCCCCCceeEecCCC
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITG------RPD--------MQQ--------------GRVLSWLSQHNFPHGLVSFADGL 453 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTa------Rp~--------~~~--------------~~T~~WL~qhglP~G~L~lr~g~ 453 (559)
...+++.+.+++++|+++|.+++ +.. ... ......|.++|++...+++....
T Consensus 23 i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~q~l~t~~~ 102 (251)
T cd04242 23 LASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKRPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVAQILLTRDD 102 (251)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcCCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEEEEehhH
Confidence 44466788888899999999974 110 100 11236677899997776554421
Q ss_pred CCChhhH--HHHHHHHHhhccCCcEEE----------EeCCccchhHHHhcCCCCCcEEEEcCCC
Q psy4654 454 SPGFLGH--KASYLKSLIQDHGVVIHA----------AYGSNKDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 454 ~~dp~~~--K~~~L~~L~~~~~~~i~a----------afGN~~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
-.+...+ =...++.++...-+|++. +++|...++++-+.-+.+..+.++....
T Consensus 103 ~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVd 167 (251)
T cd04242 103 FEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVD 167 (251)
T ss_pred hcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcC
Confidence 1111111 134566665433345554 4555667777777788888887765443
No 263
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.99 E-value=3.2e+02 Score=26.56 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=57.5
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchh-hHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHh
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQ-QGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLI 469 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~-~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~ 469 (559)
++.| -..++..+.+++.++|| +|.|+++.+... .++ -++.+++++++....+. ..++..- .+.+++++
T Consensus 95 v~~d--~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~l 167 (263)
T cd06280 95 VVLD--NRAAARTLVEHLVAQGYRRIGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFV----APTAEAA-EAALAAWL 167 (263)
T ss_pred EEEC--cHHHHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhc----ccCHHHH-HHHHHHHh
Confidence 3445 35567788888899999 688998864321 122 34566778887643221 1222221 23445544
Q ss_pred hcc-CCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 470 QDH-GVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 470 ~~~-~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
... ...-+.+.++ + ..+.+.++.|+. |..|-+||=.
T Consensus 168 ~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d 208 (263)
T cd06280 168 AAPERPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFD 208 (263)
T ss_pred cCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeC
Confidence 321 2222233333 2 456778889985 5677777733
No 264
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=42.42 E-value=3.3e+02 Score=26.48 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=56.7
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeE-ecCCCCCChhhHHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVS-FADGLSPGFLGHKASYLKS 467 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~-lr~g~~~dp~~~K~~~L~~ 467 (559)
++.| -...+..+.+.+.++|| +|.|+++.... ..++ -++++++++++..... .... .+.+. =...+++
T Consensus 96 v~~d--~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~ 170 (268)
T cd06270 96 IWLD--NEQGGYLATEHLIELGHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGD--FTEEG-GYAAMQE 170 (268)
T ss_pred EEEC--cHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECC--CCHHH-HHHHHHH
Confidence 3445 35556777888888898 78899886532 2222 3678888998765432 2221 11111 1223444
Q ss_pred Hhhc-cCCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEc
Q psy4654 468 LIQD-HGVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVG 503 (559)
Q Consensus 468 L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~ 503 (559)
++.. .....+.+.++ + -.+.+.++.|+. |..|-+++
T Consensus 171 ~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~v~g 211 (268)
T cd06270 171 LLARGAPFTAVFCANDEMAAGAISALREHGISVPQDVSIIG 211 (268)
T ss_pred HHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceeEEE
Confidence 4432 12333444444 2 467888889986 34444433
No 265
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.38 E-value=2.7e+02 Score=27.24 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--hHH---HHHHHhhCCCCCce-eEecCCCCCChhhHHHHHHHHHhhc-cC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--QGR---VLSWLSQHNFPHGL-VSFADGLSPGFLGHKASYLKSLIQD-HG 473 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~~---T~~WL~qhglP~G~-L~lr~g~~~dp~~~K~~~L~~L~~~-~~ 473 (559)
..++..+.+++.++|| +|.++++++... .++ -++.++++|++... +...... ++. -...++.++.. ..
T Consensus 101 ~~~g~~a~~~l~~~G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~ 176 (269)
T cd06281 101 AAGMRQAVEYLISLGHRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLSTP---AAS-GFDATRALLALPDR 176 (269)
T ss_pred HHHHHHHHHHHHHCCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeecCcH---HHH-HHHHHHHHHcCCCC
Confidence 4556677888888899 788999876422 222 35677788876422 2222211 111 12234444321 22
Q ss_pred CcEEEEeCCc---cchhHHHhcCCC-CCcEEEEcC
Q psy4654 474 VVIHAAYGSN---KDVSVYTSVGLK-PRSIYIVGK 504 (559)
Q Consensus 474 ~~i~aafGN~---~DV~aYr~vGI~-~~~If~i~~ 504 (559)
.....+.++. ..+.+..+.|+. |.++-+|+-
T Consensus 177 ~~ai~~~~d~~a~g~~~~l~~~g~~ip~dv~iig~ 211 (269)
T cd06281 177 PTAIIAGGTQVLVGVLRALREAGLRIPRDLSVISI 211 (269)
T ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEEe
Confidence 3333444442 356777888986 455655554
No 266
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=41.67 E-value=3.3e+02 Score=26.28 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=56.1
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCc-h--hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPD-M--QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~-~--~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
..++..+.+.+.++|+ +|.|+++.+. . ..++ -+++++++|++........+ ..+++..+ ..++.++....+
T Consensus 101 ~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~ 178 (268)
T cd06298 101 KKAAFEATELLIKNGHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEG-DYTYESGY-ELAEELLEDGKP 178 (268)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeC-CCChhHHH-HHHHHHhcCCCC
Confidence 4566778888888898 6999987655 2 2233 35677888876543222111 12232222 233444332123
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
....+.++ + ..+.+.++.|+. |..|-+|+-.
T Consensus 179 ~ai~~~~d~~a~~~~~~l~~~g~~vp~di~vvg~d 213 (268)
T cd06298 179 TAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFN 213 (268)
T ss_pred CEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeec
Confidence 23333333 2 456777888986 4566666654
No 267
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.09 E-value=1.5e+02 Score=29.00 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=55.4
Q ss_pred cCCCcccchhHHHHHHHHHHCCC-eEEEEecCCch--hhHHH---HHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDM--QQGRV---LSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSL 468 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~T---~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L 468 (559)
++.| -........+.+.++|+ +|.|+++.+.. ..++. ++++++++++....+...+. ... . ..+..+
T Consensus 98 V~~d--~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~ 170 (268)
T cd06277 98 VLTD--NYSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEK-EED---E-EDIGKF 170 (268)
T ss_pred EEec--chHHHHHHHHHHHHCCCCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEEcc-hhH---H-HHHHHH
Confidence 4445 24555667788888898 78899887652 22333 56667788765443221111 111 1 112232
Q ss_pred hhcc--CCcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 469 IQDH--GVVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 469 ~~~~--~~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
+... ...-+.+.++ + -.+.+.++.|+. +.+|.+|+-.
T Consensus 171 l~~~~~~~~ai~~~~d~~a~g~~~a~~~~g~~~p~di~vig~d 213 (268)
T cd06277 171 IDELKPLPTAFFCSNDGVAFLLIKVLKEMGIRVPEDVSVIGFD 213 (268)
T ss_pred HhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCcceEEeec
Confidence 2211 1223333344 2 356677889985 5678777744
No 268
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=39.81 E-value=3.5e+02 Score=26.01 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch---hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-C
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM---QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-G 473 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~---~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~ 473 (559)
..++....+.+.++|+ +|.++++++.. ..++ .++.|++++++...+.... .+.... .+.+.+++... .
T Consensus 101 ~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~---~~~~~~-~~~~~~~l~~~~~ 176 (266)
T cd06282 101 RAAARDVAQALAALGHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIP---FNTAAL-PSALLALLTAHPA 176 (266)
T ss_pred HHHHHHHHHHHHHcCcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCC---CcHHHH-HHHHHHHhcCCCC
Confidence 4556677788888887 78899887531 2233 3566778888754432211 111111 12333333221 2
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
...+.+.++ + -.+.+.++.|+. +.+|-+++-.
T Consensus 177 ~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d 212 (266)
T cd06282 177 PTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFD 212 (266)
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 333333334 2 477888889985 4677777654
No 269
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=39.13 E-value=3.8e+02 Score=26.23 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=55.1
Q ss_pred cCCCcccchhHHHHHHHHHHC-CC---eEEEEecCCc--hhhHHH---HHHHhhCCCCCceeEecCCCCCChhhHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQEL-GY---LIIYITGRPD--MQQGRV---LSWLSQHNFPHGLVSFADGLSPGFLGHKASYL 465 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~-GY---~IIYLTaRp~--~~~~~T---~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L 465 (559)
++.|. ..+...+.+.+.+. |+ +|.|+++++. ....+. ++.|++++..........+ ..+.+. -.+.+
T Consensus 102 V~~d~--~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~-~~~~~~-~~~~~ 177 (275)
T cd06307 102 VGIDN--RAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLETLEG-LDDPAR-AYEAT 177 (275)
T ss_pred EccCh--HHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHHHHHHhhCCCcEEEeeccC-CCChHH-HHHHH
Confidence 44552 44555566777765 53 9999999764 223333 4455667754433222111 112211 12344
Q ss_pred HHHhhc-cCCcEEEEeCC--ccchhHHHhcCCCCCcEEEEcCCC
Q psy4654 466 KSLIQD-HGVVIHAAYGS--NKDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 466 ~~L~~~-~~~~i~aafGN--~~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
+++++. ..+.-..+.++ .-.+.++++.|++ ..|-+||-.+
T Consensus 178 ~~~l~~~~~~~ai~~~~d~~~g~~~al~~~g~~-~di~Ivg~d~ 220 (275)
T cd06307 178 RKLLARHPDLVGIYNAGGGNRGVIRALREAGRA-GKVVFVGHEL 220 (275)
T ss_pred HHHHHhCCCceEEEECCCChHHHHHHHHHcCCC-CCcEEEEecC
Confidence 454332 12322333334 3457788999997 4677777543
No 270
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=38.85 E-value=3.7e+02 Score=26.05 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc--cC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD--HG 473 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~--~~ 473 (559)
...+..+.+++.++|+ +|.|+++.+.. ..++ .++++++++++...+..... ..+++. -...+++++.. ..
T Consensus 101 ~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~ 178 (264)
T cd06274 101 RDGAAELTRELLAAPPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAE-GYSPES-GYQLMAELLARLGRL 178 (264)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecC-CCChHH-HHHHHHHHHccCCCC
Confidence 4455667788888887 67889887642 2333 36677889987665543321 112222 22334454432 12
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEc
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVG 503 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~ 503 (559)
..-+.+.++ + -.+.+.++.|+. |..+-+++
T Consensus 179 ~~ai~~~~d~~A~g~~~al~~~g~~ip~dv~v~g 212 (264)
T cd06274 179 PRALFTTSYTLLEGVLRFLRERPGLAPSDLRIAT 212 (264)
T ss_pred CcEEEEcChHHHHHHHHHHHHcCCCCCcceEEEE
Confidence 333334444 2 456788888875 45455554
No 271
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=38.67 E-value=4.1e+02 Score=26.97 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=55.6
Q ss_pred cchhHHHHHHHHHHCCC-eEEEEecCCchh--hHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccC-
Q psy4654 401 VRAGAVDIVRHWQELGY-LIIYITGRPDMQ--QGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHG- 473 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~- 473 (559)
-..++..++.+|.++|| +|.|+++.+... .++ -++.|+++|++...+. ... .+.+. -.+.+++++....
T Consensus 162 n~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~-~~~--~~~~~-~~~~~~~ll~~~~~ 237 (327)
T TIGR02417 162 DVDAAAELIERLLSQHADEFWYLGAQPELSVSRDRLAGFRQALKQATLEVEWVY-GGN--YSRES-GYQMFAKLCARLGR 237 (327)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeCcccchhHHHHHHHHHHHHHHcCCChHhEE-eCC--CChHH-HHHHHHHHHhcCCC
Confidence 35678889999999999 799998876432 223 3567778888632222 211 11111 1234555543222
Q ss_pred -CcEEEEeCC--c-cchhHHHhcCCCCCcEEEEc
Q psy4654 474 -VVIHAAYGS--N-KDVSVYTSVGLKPRSIYIVG 503 (559)
Q Consensus 474 -~~i~aafGN--~-~DV~aYr~vGI~~~~If~i~ 503 (559)
..-+.+.++ + -.+.+.++.|--|..|-+||
T Consensus 238 ~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvig 271 (327)
T TIGR02417 238 LPQALFTTSYTLLEGVLDYMLERPLLDSQLHLAT 271 (327)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEE
Confidence 222222333 3 35567778883355777776
No 272
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=38.63 E-value=2.7e+02 Score=27.20 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHHC--CC-eEEEEecCCchh--h---HHHHHHHhhC-CCCCceeEecCCCCCChhhHHHHHHHHHhh-c
Q psy4654 402 RAGAVDIVRHWQEL--GY-LIIYITGRPDMQ--Q---GRVLSWLSQH-NFPHGLVSFADGLSPGFLGHKASYLKSLIQ-D 471 (559)
Q Consensus 402 ~~GA~elv~~l~~~--GY-~IIYLTaRp~~~--~---~~T~~WL~qh-glP~G~L~lr~g~~~dp~~~K~~~L~~L~~-~ 471 (559)
..+...+.+++.++ |+ +|.++++.+... . +..++.|+++ |++.......+ ..+...+. .+++++. .
T Consensus 105 ~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~l~~~ 180 (275)
T cd06320 105 KANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPAD---WDREKAYD-VATTILQRN 180 (275)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCC---ccHHHHHH-HHHHHHHhC
Confidence 44556677777776 77 899998866432 1 3346677888 76543222211 11222222 3334332 1
Q ss_pred cCCc-EEEEeCC-c-cchhHHHhcCCCCCcEEEEcCCC
Q psy4654 472 HGVV-IHAAYGS-N-KDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 472 ~~~~-i~aafGN-~-~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
.... |++..+. + -.+.++++.|++ .+|-+||-.+
T Consensus 181 ~~~~ai~~~~d~~a~~~~~al~~~g~~-~di~vig~d~ 217 (275)
T cd06320 181 PDLKAIYCNNDTMALGVVEAVKNAGKQ-GKVLVVGTDG 217 (275)
T ss_pred CCccEEEECCchhHHHHHHHHHhcCCC-CCeEEEecCC
Confidence 2233 3333344 3 366778889997 7788887554
No 273
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=37.58 E-value=88 Score=34.56 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHCCCeEEEEe--cCCchhh------HHHHHHHhh---------------------CCCCCceeEecCCCC
Q psy4654 404 GAVDIVRHWQELGYLIIYIT--GRPDMQQ------GRVLSWLSQ---------------------HNFPHGLVSFADGLS 454 (559)
Q Consensus 404 GA~elv~~l~~~GY~IIYLT--aRp~~~~------~~T~~WL~q---------------------hglP~G~L~lr~g~~ 454 (559)
.++..++.+-++|-+++++| |||.+.. +...++|.+ ..+..|.+++.++.+
T Consensus 34 a~lpTI~~l~~~gakvvl~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~f~~d~~g~~~~~~i~~l~~GeIlLLEN~R 113 (397)
T cd00318 34 AALPTIKYLLEQGAKVVLLSHLGRPKGEPNEKYSLAPVAKALSELLGQPVTFANDCVGPEAEEAVEALKPGDVLLLENVR 113 (397)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHCCCcEECCCCCCHHHHHHHhcCCCCcEEEEeccC
Confidence 46788889989999999887 7885421 222334432 247789999988765
Q ss_pred CChhh--H-------HHHHHHHHhhccCCcEEEEeCCccchhHHHhcCCCC
Q psy4654 455 PGFLG--H-------KASYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGLKP 496 (559)
Q Consensus 455 ~dp~~--~-------K~~~L~~L~~~~~~~i~aafGN~~DV~aYr~vGI~~ 496 (559)
-.+++ . ..++.+.|.+-+++++-++||-+.-..+-. +|++.
T Consensus 114 F~~~E~~~~~~e~~~~~~~a~~LA~l~DiyVNDAFg~aHR~haS~-vgi~~ 163 (397)
T cd00318 114 FYPEEEGKRDDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASM-VGIAL 163 (397)
T ss_pred ccccccccCCcchhhHHHHHHHHHHhCCEEEEcchhhhhhcccch-hhhhh
Confidence 43322 2 557888887778999999999853222222 45554
No 274
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.99 E-value=3.9e+02 Score=25.77 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..++..+.+.+.++|+ +|.++++.+... . +.-.+++++++++........+ ..++.... ..+++++... ..
T Consensus 101 ~~~~~~a~~~l~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~ 178 (269)
T cd06288 101 EQGGYDATRHLLAAGHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHG-DWSADDGY-EAAAALLDLDDRP 178 (269)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeC-CCChHHHH-HHHHHHHhCCCCC
Confidence 5667788888888888 788998776422 1 2235677788876443222111 11221111 2244444321 23
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKVS 506 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~~ 506 (559)
....+..+ + ..+.+.++.|+. +..|.+++-.+
T Consensus 179 ~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d~ 214 (269)
T cd06288 179 TAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDN 214 (269)
T ss_pred CEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeCC
Confidence 33333333 3 466788889986 45777777544
No 275
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=36.87 E-value=2.9e+02 Score=28.42 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=58.9
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..++..+.++|.++|| +|.|+++.+.. ..++ -++.|+++|++........+ ..+.+. -.+.+++++... ..
T Consensus 161 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~ 238 (343)
T PRK10727 161 RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFG-EPDESG-GEQAMTELLGRGRNF 238 (343)
T ss_pred HHHHHHHHHHHHHCCCccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeC-CCChhH-HHHHHHHHHhCCCCC
Confidence 4567778889999998 78899876542 2223 35677889998654322211 111111 123455554321 12
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.-+.+..+ + -.+.+.++.|+. |..|-+||=.
T Consensus 239 ~ai~~~nD~~A~g~~~al~~~G~~vP~disVigfD 273 (343)
T PRK10727 239 TAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFD 273 (343)
T ss_pred CEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEeec
Confidence 23334444 3 466788889985 5677777754
No 276
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=36.84 E-value=67 Score=28.50 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEe
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~l 449 (559)
.++..++.+.+.+.||+|+ -| ..|.+||.++|++...+.-
T Consensus 12 k~~~~~~a~~l~~~G~~i~-aT-------~gTa~~L~~~gi~~~~v~~ 51 (116)
T cd01423 12 KPELLPTAQKLSKLGYKLY-AT-------EGTADFLLENGIPVTPVAW 51 (116)
T ss_pred chhHHHHHHHHHHCCCEEE-Ec-------cHHHHHHHHcCCCceEeee
Confidence 4668899999999999995 44 4799999999998877653
No 277
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=36.60 E-value=20 Score=40.61 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHCCCeEEEEecCCchhhHHHHHHHhhC-CCCC---ceeEecC-C-----C-CCChhhHHHHHHHHHhhccCCcE
Q psy4654 408 IVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH-NFPH---GLVSFAD-G-----L-SPGFLGHKASYLKSLIQDHGVVI 476 (559)
Q Consensus 408 lv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qh-glP~---G~L~lr~-g-----~-~~dp~~~K~~~L~~L~~~~~~~i 476 (559)
.++.++.+| +.+.+||-|..+ .+-|++++ |+.. -.|.... | + ..+-...|...+++++. +-.+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvm---VEpFake~LG~D~VvGTEL~v~~~G~~TG~~~G~n~~ek~~~rl~~~~g--~~~~ 174 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVM---VERFAKEHLRADEVIGSELVVNRFGFATGFIRGTDVDQSVANRVANLFV--DERP 174 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHH---HHHHHHHhcCCceEEeeeEEEeeccEEEEEEecCccHHHHHHHHHHHhC--ccCc
Confidence 445566778 899999877643 34566653 4321 1122211 1 1 11223456777777653 3245
Q ss_pred EEEeCC
Q psy4654 477 HAAYGS 482 (559)
Q Consensus 477 ~aafGN 482 (559)
..|+|+
T Consensus 175 ~vg~~~ 180 (498)
T PLN02499 175 QLGLGR 180 (498)
T ss_pred eecccC
Confidence 677776
No 278
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=36.01 E-value=3.6e+02 Score=27.79 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..++....+++.++|| +|.|+++..... . +.-+++|+++|++....+...+ ..+++. -.+.+++++... ..
T Consensus 161 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~ 238 (346)
T PRK10401 161 VSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTG-TPDMQG-GEAAMVELLGRNLQL 238 (346)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecC-CCChHH-HHHHHHHHHcCCCCC
Confidence 5567788888899998 677897765322 2 3346788899997654332221 122211 123455554321 22
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.-+.+.++ + -.+.+.++.|+. |..|=+||=.
T Consensus 239 ~ai~~~nd~~A~g~~~al~~~G~~vP~disvigfD 273 (346)
T PRK10401 239 TAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFD 273 (346)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 33334444 3 466788889986 4567666643
No 279
>KOG3189|consensus
Probab=35.68 E-value=54 Score=33.32 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=24.2
Q ss_pred eEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEec
Q psy4654 379 VVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITG 424 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTa 424 (559)
.+.||+|||||..... +-+.+.+.+..++.. -.|-++-|
T Consensus 13 l~lfdvdgtLt~~r~~------~~~e~~~~l~~lr~~-v~ig~Vgg 51 (252)
T KOG3189|consen 13 LCLFDVDGTLTPPRQK------VTPEMLEFLQKLRKK-VTIGFVGG 51 (252)
T ss_pred EEEEecCCcccccccc------CCHHHHHHHHHHhhh-eEEEEeec
Confidence 6789999999976432 233455566665543 45555533
No 280
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=35.54 E-value=2.1e+02 Score=25.20 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=46.4
Q ss_pred EecCCceeEEEeeecCCCcceeeeEeEEEEecCCCCcEEEEE--------EEEe-CCCccEEEecCCCCcCCCCccceEE
Q psy4654 287 VKEGLPQTLVARFMYGPFDMFTLTVDVHLIKEPPSGEWVLMS--------TEVT-DKTGRVSYTLPEDHKLSYGMYPVKM 357 (559)
Q Consensus 287 ~~~~~~~~~~~~F~yg~~d~~~l~vdi~~~~~~~~g~w~~~~--------t~~t-~s~gri~~~~p~~~~L~~G~y~vkm 357 (559)
+..|++-.+.-.|.- .-++..+.+-+.|.+. .|.++.-- .... ...+++.+++|.. |.+|.|.|..
T Consensus 31 ~~~ge~~~i~i~~~~-~~~i~~~~~~~~i~~~--~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~--L~~G~Y~i~v 105 (142)
T PF14524_consen 31 FESGEPIRIRIDYEV-NEDIDDPVFGFAIRDS--DGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKP--LNPGEYSISV 105 (142)
T ss_dssp EETTSEEEEEEEEEE-SS-EEEEEEEEEEEET--T--EEEEEEHHHHT--EEE-TT-EEEEEEEEE----B-SEEEEEEE
T ss_pred EeCCCEEEEEEEEEE-CCCCCccEEEEEEEcC--CCCEEEEECccccCccccccCCCEEEEEEEEcCc--cCCCeEEEEE
Confidence 445666666666655 1222223244445443 56665531 1122 5566788888866 9999999999
Q ss_pred EEcCCceeEEEEEEeeCCCCeeEEEeecc
Q psy4654 358 VVRGDHTSVDFYLAVVPPRTEVVVFSVDG 386 (559)
Q Consensus 358 vV~gd~t~~~~~i~v~~~~~k~VIfDIDG 386 (559)
.+..+.. .-.+..+..++..|+|-+
T Consensus 106 ~l~~~~~----~~~~~d~~~~~~~f~V~~ 130 (142)
T PF14524_consen 106 GLGDDSS----GGEVLDWIEDALSFEVED 130 (142)
T ss_dssp EEEETTT----EEEEEEEEEEEEEEEEE-
T ss_pred EEEecCC----CCEEEEEECCEEEEEEEC
Confidence 9911111 122334455777777766
No 281
>PRK14558 pyrH uridylate kinase; Provisional
Probab=33.03 E-value=3.2e+02 Score=27.24 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=65.0
Q ss_pred EEEeeccce-eccccccCCCcccchhHHHHHHHHHHCCCeEEEEe-c------CCch-----------hh----H--HHH
Q psy4654 380 VVFSVDGSF-TASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYIT-G------RPDM-----------QQ----G--RVL 434 (559)
Q Consensus 380 VIfDIDGTl-t~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLT-a------Rp~~-----------~~----~--~T~ 434 (559)
||+-|=|++ |+.+. -.-|......+++.+..+.++|++++.++ | |... +. . ...
T Consensus 3 iviKlGgs~lt~~~~-~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~~~~~~~~d~ig~~~~~ln~~~~~ 81 (231)
T PRK14558 3 VLLKLSGEALSGEGE-KGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKELSPTRADQIGMLGTVINALYLK 81 (231)
T ss_pred EEEEeeHHHccCCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 556666644 33322 22333334456677777888899999997 2 2110 10 1 124
Q ss_pred HHHhhCCCC---CceeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeC-----CccchhHHHhcCCCCCcEEEEc
Q psy4654 435 SWLSQHNFP---HGLVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYG-----SNKDVSVYTSVGLKPRSIYIVG 503 (559)
Q Consensus 435 ~WL~qhglP---~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafG-----N~~DV~aYr~vGI~~~~If~i~ 503 (559)
+-|.++|+| ..++.+.. +........++.+.....++|..++. +....+++.+.-+.+.++.+..
T Consensus 82 ~~l~~~gi~a~~~~~~~~~~----~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~t 154 (231)
T PRK14558 82 DIFEKSGLKAVIVSQIVNLP----SVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKAT 154 (231)
T ss_pred HHHHHcCCCeEEeccccccc----hhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEe
Confidence 455678887 44443322 12234456667765544457777642 2345666676677777776543
No 282
>PF15250 Raftlin: Raftlin
Probab=31.89 E-value=26 Score=39.18 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=35.1
Q ss_pred ccceeEEecCCceeEEE---eeecCCCcceeeeEeEEEEecCCCCcEEEEEEE-----EeCCCccEEEe
Q psy4654 281 RANDVIVKEGLPQTLVA---RFMYGPFDMFTLTVDVHLIKEPPSGEWVLMSTE-----VTDKTGRVSYT 341 (559)
Q Consensus 281 r~~d~i~~~~~~~~~~~---~F~yg~~d~~~l~vdi~~~~~~~~g~w~~~~t~-----~t~s~gri~~~ 341 (559)
.++|+||+| ...+|+| |=+|||+-. +| .. - .|.+-... +||++|.|+..
T Consensus 341 ~~yDAIVVE-QWTVieG~eVkTDY~PLL~-sL-------A~--~-GW~LtcvLpTPivk~~~~Gnl~tK 397 (457)
T PF15250_consen 341 KGYDAIVVE-QWTVIEGVEVKTDYGPLLN-SL-------AE--F-GWQLTCVLPTPIVKTDSEGNLATK 397 (457)
T ss_pred cccceEEEE-EEEEEeeeeeecchHHHHH-HH-------Hh--h-ceEEEEeccCceEeecCcCceeee
Confidence 489999999 6667766 678999833 22 21 1 48876544 79999998776
No 283
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=30.96 E-value=4.2e+02 Score=26.44 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=57.2
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--h---hHHHHHHHhhCCCCCcee-EecCCCCCChhhHHHHHHHHHhhcc-C
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--Q---QGRVLSWLSQHNFPHGLV-SFADGLSPGFLGHKASYLKSLIQDH-G 473 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~---~~~T~~WL~qhglP~G~L-~lr~g~~~dp~~~K~~~L~~L~~~~-~ 473 (559)
..+...+.+++.++|| +|.++++.+.. . .+..+++++++|++.... ...... +++.. ...+++++... .
T Consensus 137 ~~~g~~a~~~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~ 213 (309)
T PRK11041 137 LTAAFEAVNYLHELGHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDF--TFEAG-AKALKQLLDLPQP 213 (309)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCC--CHHHH-HHHHHHHHcCCCC
Confidence 5566777888888897 78889887542 1 233467888898875432 222211 22121 13444444321 2
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
..-+.+.++ + -.+.+.+..|+. |..|.+|+-.
T Consensus 214 ~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vvg~D 249 (309)
T PRK11041 214 PTAVFCHSDVMALGALSQAKRMGLRVPQDLSIIGFD 249 (309)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEeC
Confidence 222333344 3 467888889985 4677777743
No 284
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=30.95 E-value=5.1e+02 Score=26.19 Aligned_cols=96 Identities=7% Similarity=0.060 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCc-h--hh---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPD-M--QQ---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~-~--~~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
..++..++++|.++|| +|.|+++.+. . .. +.-+++++++|++. ....... +.+ .-.+.++.++.. +.
T Consensus 157 ~~~~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~--~~~~~~~--~~~-~~~~~~~~~l~~-~~ 230 (311)
T TIGR02405 157 YGAIELLMANLYQQGHRHISFLGVDPSDKTTGLMRHNAYLAYCESANLEP--IYQTGQL--SHE-SGYVLTDKVLKP-ET 230 (311)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEccCcccchhHHHHHHHHHHHHHHcCCCc--eeeeCCC--CHH-HHHHHHHHHHhc-CC
Confidence 5677888999999999 6889976432 1 12 22467888899973 2222111 111 112345554332 22
Q ss_pred c-EEEEeCC-c-cchhHHHhcCCCCCcEEEEcCC
Q psy4654 475 V-IHAAYGS-N-KDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 475 ~-i~aafGN-~-~DV~aYr~vGI~~~~If~i~~~ 505 (559)
. |+++-+. + -.+.+.++.|+ ..|-+||=.
T Consensus 231 tAi~~~~D~~A~g~~~~l~~~g~--~dvsvvgfd 262 (311)
T TIGR02405 231 TALVCATDTLALGAAKYLQELDR--SDVQVSSVG 262 (311)
T ss_pred CEEEECCcHHHHHHHHHHHHcCC--CCeEEEeeC
Confidence 2 3333333 3 45678888998 567666644
No 285
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.94 E-value=5e+02 Score=25.12 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=55.6
Q ss_pred cchhHHHHHHHHHHCCC-eEEEEecCCchh--hHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc-cC
Q psy4654 401 VRAGAVDIVRHWQELGY-LIIYITGRPDMQ--QGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD-HG 473 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~-~~ 473 (559)
....+..+...+.++|| +|.|+++.+... .++ -++++.+++++........+ ..+... -...+++++.. ..
T Consensus 99 ~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~ 176 (265)
T cd06290 99 NFQGGYLATQHLIDLGHRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQG-DFEEES-GLEAVEELLQRGPD 176 (265)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEec-CCCHHH-HHHHHHHHHcCCCC
Confidence 35566778888889998 788898764321 222 35677778876543211111 111211 22345555432 12
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
..-..+.++ + -.+.+.++.|+. |..|-+|+-.
T Consensus 177 ~~aii~~~~~~a~~~~~~l~~~g~~ip~di~vi~~d 212 (265)
T cd06290 177 FTAIFAANDQTAYGARLALYRRGLRVPEDVSLIGFD 212 (265)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEeeec
Confidence 222222333 2 366788889975 4566666543
No 286
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=30.66 E-value=73 Score=32.01 Aligned_cols=95 Identities=19% Similarity=0.335 Sum_probs=55.2
Q ss_pred eEEEeeccceecccc-----------------ccCCCcccchhHHHHHHHHHHCCCeEEEE-----ecCCchhhHHHHHH
Q psy4654 379 VVVFSVDGSFTASVS-----------------VTGRDPKVRAGAVDIVRHWQELGYLIIYI-----TGRPDMQQGRVLSW 436 (559)
Q Consensus 379 ~VIfDIDGTlt~sd~-----------------~~g~D~~~~~GA~elv~~l~~~GY~IIYL-----TaRp~~~~~~T~~W 436 (559)
++||=++|-+...|. .|.+- .+++..+.+..|+++||.++|+ ||-+..-+--+.-|
T Consensus 1 v~vfkV~GEtnTDdLSPa~dA~SRpDiPLHA~aMl~~--~~~~~l~~i~~lk~kg~~la~vGdvvGtGSSRKSa~NSvlW 78 (204)
T PF06434_consen 1 VTVFKVPGETNTDDLSPAPDAWSRPDIPLHALAMLKN--RRPGPLEQIEELKEKGHPLAYVGDVVGTGSSRKSATNSVLW 78 (204)
T ss_dssp EEEEEEEEEEEHHHHS-GGGGGGTTSHHHHHCCTT-S---BTTSHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHH
T ss_pred CeEEEeCCccccCcCCccccccCCCCchHHHHHhccc--ccccHHHHHHHHHHcCCcEEEecCccccCcccchhhhhhhh
Confidence 367777887654431 24443 3667789999999999999998 55555556666789
Q ss_pred HhhCCCCCce------eEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC
Q psy4654 437 LSQHNFPHGL------VSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS 482 (559)
Q Consensus 437 L~qhglP~G~------L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN 482 (559)
.--+.+|+-| +.+...+.+ .+++.+-+.-.++|++-..+
T Consensus 79 ~~G~diP~VPnKr~GGvv~G~~IAP-------IFfnT~edsGaLPIe~dv~~ 123 (204)
T PF06434_consen 79 HMGEDIPYVPNKRTGGVVIGGKIAP-------IFFNTAEDSGALPIECDVSS 123 (204)
T ss_dssp HHSEEETTEEEEEE--EEEEEEE-H-------HHHHHHHHTT-EEEE---TT
T ss_pred hccCCCCCCCccCccCeEECCEEcc-------eEeccccccCCceEEEeccc
Confidence 9888888765 333322222 34555544455788884433
No 287
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=30.57 E-value=90 Score=27.34 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEe
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~l 449 (559)
.+...++++.+.+.||+|+ -| +.|.+||+++|++.-.+..
T Consensus 12 k~~~~~~~~~l~~~G~~l~-aT-------~gT~~~l~~~gi~~~~v~~ 51 (110)
T cd01424 12 KPEAVEIAKRLAELGFKLV-AT-------EGTAKYLQEAGIPVEVVNK 51 (110)
T ss_pred HhHHHHHHHHHHHCCCEEE-Ec-------hHHHHHHHHcCCeEEEEee
Confidence 3457899999999999985 44 4699999999998655543
No 288
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=30.41 E-value=5.7e+02 Score=25.78 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCceeE-ecCCCCCChhhHHHHHHHHHhhcc-C
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLVS-FADGLSPGFLGHKASYLKSLIQDH-G 473 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L~-lr~g~~~dp~~~K~~~L~~L~~~~-~ 473 (559)
..++..+.+++.++|| +|.|+++.+... . +.-+++|+++|++..+.+ ..+.. +...- ...+++++... .
T Consensus 159 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~ 235 (327)
T PRK10423 159 LLGGDLATQYLIDKGYTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDF--EFNGG-FDAMQQLLALPLR 235 (327)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCCC--ChHHH-HHHHHHHhcCCCC
Confidence 4456778888999998 688998765321 2 233677788998865432 22221 11111 12344444321 1
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
..-+.+.++ + -.+.+.++.|+. |..|-+||-.
T Consensus 236 ~~ai~~~~d~~A~g~~~~l~~~g~~vP~dvsvigfd 271 (327)
T PRK10423 236 PQAVFTGNDAMAVGVYQALYQAGLSVPQDIAVIGYD 271 (327)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 222233333 2 466778888986 6777777754
No 289
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=30.35 E-value=1e+02 Score=38.24 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=39.0
Q ss_pred eeCCCCeeEE--EeeccceeccccccCCCcccchhHHHHHHHHH----HCCCeEEEEecCCchhhHHHHHHHhhCCCC
Q psy4654 372 VVPPRTEVVV--FSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQ----ELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443 (559)
Q Consensus 372 v~~~~~k~VI--fDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~----~~GY~IIYLTaRp~~~~~~T~~WL~qhglP 443 (559)
-.+.-..++| +|||.| + | ..+.+.+++..+. .....++|.|||+... +.+-|.++++|
T Consensus 765 ~~~~~~~~~via~D~d~~-~------~----~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~---~~~~l~~~~lp 828 (1050)
T TIGR02468 765 ALRRRKRLFVIAVDCYDD-K------D----LLQIIKNIFEAVRKERMEGSSGFILSTSMTISE---IQSFLKSGGLN 828 (1050)
T ss_pred cccccceEEEEEeccCCC-C------C----hHHHHHHHHHHHhccccCCceEEEEEcCCCHHH---HHHHHHhCCCC
Confidence 3455567777 899999 1 2 2344566666665 2225789999998754 45558889998
No 290
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=30.35 E-value=87 Score=33.08 Aligned_cols=60 Identities=25% Similarity=0.389 Sum_probs=40.2
Q ss_pred cCCceeEEEeeecCCCcceeee---EeEEEEe--------cCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccce
Q psy4654 289 EGLPQTLVARFMYGPFDMFTLT---VDVHLIK--------EPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPV 355 (559)
Q Consensus 289 ~~~~~~~~~~F~yg~~d~~~l~---vdi~~~~--------~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~v 355 (559)
.|.+-+|.|+.-= .+=..+. |||.-.. .+...+|.+-|..+||.+|+..|.= +.+|.|+|
T Consensus 129 ~G~pl~v~G~V~D--~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~T-----I~Pg~Ypi 199 (281)
T TIGR02438 129 AGTPLVFSGQVTD--LDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITT-----MQPAPYQI 199 (281)
T ss_pred CCCEEEEEEEEEc--CCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEE-----ECCCCcCC
Confidence 4788889998751 2223443 7774222 2334567778999999999987763 56777775
No 291
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.33 E-value=91 Score=31.90 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=45.2
Q ss_pred cEEEEEEEEeCCCccEEEecCCCCcCCCCccc------------eEEEE--cCCceeEEEEEEeeCCCCeeEEEeeccce
Q psy4654 323 EWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYP------------VKMVV--RGDHTSVDFYLAVVPPRTEVVVFSVDGSF 388 (559)
Q Consensus 323 ~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~------------vkmvV--~gd~t~~~~~i~v~~~~~k~VIfDIDGTl 388 (559)
+|.-.|..+||.+|+..|.= +++|.|| |+|.| +|..+.....||+... +.....+|-+.+
T Consensus 116 ~f~g~Gr~~Td~~G~y~F~T-----i~Pg~yp~~~~~~~~R~aHih~~v~~~g~~~~L~TqlYf~dd-~~~~~dpi~~~v 189 (226)
T COG3485 116 NFNGRGRTITDEDGEYRFRT-----IKPGPYPWRNGGPMWRPAHIHFSVFARGINTRLVTQLYFPDD-PANARDPILALV 189 (226)
T ss_pred cccceEEEEeCCCceEEEEE-----eecccccCCCCCCcCccceeEEEEeCCcccceEEEEEecCCC-hhhccCchhccc
Confidence 47788999999999999873 6777775 45556 4666778888888766 445555666665
Q ss_pred ecc
Q psy4654 389 TAS 391 (559)
Q Consensus 389 t~s 391 (559)
...
T Consensus 190 ~~~ 192 (226)
T COG3485 190 PDE 192 (226)
T ss_pred Ccc
Confidence 544
No 292
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=30.22 E-value=1.7e+02 Score=36.07 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=27.9
Q ss_pred cCCCcccchhHHHHHHHHHHCCCeEEEEecCCch
Q psy4654 395 TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDM 428 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~ 428 (559)
.-.|+ +++||.+.++.+++.|.++..|||-...
T Consensus 627 gieD~-lq~~v~etI~~L~~AGIkv~mlTGD~~~ 659 (1057)
T TIGR01652 627 AIEDK-LQEGVPETIELLRQAGIKIWVLTGDKVE 659 (1057)
T ss_pred EEhhh-hhhccHHHHHHHHHCCCeEEEEcCCcHH
Confidence 33464 8999999999999999999999996443
No 293
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=29.79 E-value=5.3e+02 Score=25.11 Aligned_cols=104 Identities=15% Similarity=0.021 Sum_probs=56.4
Q ss_pred cCCCcccchhHHHHHHHHHHC--CC-eEEEEecCCch--hhHH---HHHHHhhC-CCCCceeEecCCCCCChhhHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQEL--GY-LIIYITGRPDM--QQGR---VLSWLSQH-NFPHGLVSFADGLSPGFLGHKASYL 465 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~--GY-~IIYLTaRp~~--~~~~---T~~WL~qh-glP~G~L~lr~g~~~dp~~~K~~~L 465 (559)
++.|. ..+...+.+++.+. |+ +|.|+++.+.. ..++ .++.|+++ +++..... .. ..++.. -...+
T Consensus 100 V~~d~--~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~-~~--~~~~~~-~~~~~ 173 (270)
T cd06308 100 IGADN--YEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVAQQ-DG--DWLKEK-AEEKM 173 (270)
T ss_pred eecCc--HHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEEec-CC--CccHHH-HHHHH
Confidence 45553 55666777777773 66 78899775432 1223 35566777 66422111 11 122211 12344
Q ss_pred HHHhhc-cCCcEEEEeCC--c-cchhHHHhcCCCCCcEEEEcCC
Q psy4654 466 KSLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 466 ~~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~~~~If~i~~~ 505 (559)
++++.. .++..+.+.++ + -.+.+.++.|+. .+|.+||-.
T Consensus 174 ~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~-~dv~vvg~d 216 (270)
T cd06308 174 EELLQANPDIDLVYAHNDPMALGAYLAAKRAGRE-KEIKFIGID 216 (270)
T ss_pred HHHHHhCCCCcEEEeCCcHHHHHHHHHHHHcCCC-CCcEEEEec
Confidence 554432 22333333344 3 577888899999 888887754
No 294
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=29.74 E-value=1.2e+02 Score=29.30 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHHCCCeEEEEecCCc--hhhHHHHHHHhhC--CCCCceeEecC
Q psy4654 400 KVRAGAVDIVRHWQELGYLIIYITGRPD--MQQGRVLSWLSQH--NFPHGLVSFAD 451 (559)
Q Consensus 400 ~~~~GA~elv~~l~~~GY~IIYLTaRp~--~~~~~T~~WL~qh--glP~G~L~lr~ 451 (559)
.+.|+|.++++.|-+. |.|+++||--+ ..-+.--+||.+. =+|+-.+.+++
T Consensus 68 ~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCg 122 (180)
T COG4502 68 GVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCG 122 (180)
T ss_pred CccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEec
Confidence 4789999999999886 99999999833 3334567899875 35666677765
No 295
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=29.38 E-value=2.2e+02 Score=25.38 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=50.0
Q ss_pred HHHHHHCCC-eEEEEecCCch--hhH---HHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccC-CcEEEEeC
Q psy4654 409 VRHWQELGY-LIIYITGRPDM--QQG---RVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHG-VVIHAAYG 481 (559)
Q Consensus 409 v~~l~~~GY-~IIYLTaRp~~--~~~---~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~-~~i~aafG 481 (559)
+++|.++|| +|.|+++.... ... .-++++.++|++............ + .........+ +... --|++.-+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l-~~~~pdaii~~~~ 77 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDS-E-DAREAQLLWL-RRLRPDAIICSND 77 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSH-H-HHHHHHHHHH-HTCSSSEEEESSH
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcc-h-hHHHHHHHHH-hcCCCcEEEEcCH
Confidence 467889999 78899855432 222 245677889999777666542221 1 1121211222 1111 12344333
Q ss_pred C-c-cchhHHHhcCCC-CCcEEEEcC
Q psy4654 482 S-N-KDVSVYTSVGLK-PRSIYIVGK 504 (559)
Q Consensus 482 N-~-~DV~aYr~vGI~-~~~If~i~~ 504 (559)
. + ..+.+.++.|+. |.++-+|+-
T Consensus 78 ~~a~~~~~~l~~~g~~vP~di~vv~~ 103 (160)
T PF13377_consen 78 RLALGVLRALRELGIRVPQDISVVSF 103 (160)
T ss_dssp HHHHHHHHHHHHTTSCTTTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCcccccccEEEe
Confidence 3 2 577788889984 556666653
No 296
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=29.13 E-value=1.9e+02 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=35.3
Q ss_pred cCCceeEEEEEEeeCCCCeeEEEeeccceeccccccCCCcccchhHHHHHHHH
Q psy4654 360 RGDHTSVDFYLAVVPPRTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHW 412 (559)
Q Consensus 360 ~gd~t~~~~~i~v~~~~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l 412 (559)
.|....+.+.+.|-+.+.. -...++|++.-+...+|.- +-.-|++.+.+.
T Consensus 98 ~G~P~~~~G~~~L~~~~~g-t~~~~~g~v~v~VPlvGgk--iE~~v~~~~~~~ 147 (159)
T PF10698_consen 98 PGAPVSISGTMRLRPDGGG-TRLTVEGEVKVKVPLVGGK--IEKAVAENLRKL 147 (159)
T ss_pred cCceEEEEEEEEEecCCCC-EEEEEEEEEEEEEccccHH--HHHHHHHHHHHH
Confidence 4777778888888885554 5678999999999888873 444455544444
No 297
>PLN03034 phosphoglycerate kinase; Provisional
Probab=28.87 E-value=1.1e+02 Score=34.60 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCCceeEecCCCCCChh--hHHHHHHHHHhhccCCcEEEEeCCc
Q psy4654 441 NFPHGLVSFADGLSPGFL--GHKASYLKSLIQDHGVVIHAAYGSN 483 (559)
Q Consensus 441 glP~G~L~lr~g~~~dp~--~~K~~~L~~L~~~~~~~i~aafGN~ 483 (559)
+++.|.++|.++.+-.++ ....++.+.|.+-+++++-++||-+
T Consensus 184 ~l~~GeVlLLENvRF~~eE~~nd~~fa~~LA~l~DiyVNDAFgta 228 (481)
T PLN03034 184 SLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTA 228 (481)
T ss_pred cCCCCcEEEEeccCcCcccccCcHHHHHHHHhhCCEEEecchhhh
Confidence 688999999987644222 2345678888777899999999985
No 298
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=28.28 E-value=1.2e+02 Score=24.58 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=31.8
Q ss_pred EeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEcCCceeEEEEEEeeCCC
Q psy4654 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDHTSVDFYLAVVPPR 376 (559)
Q Consensus 311 vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~gd~t~~~~~i~v~~~~ 376 (559)
+.|.+.... +. ...+..||++|+-.+.- |++|.|.|+..-.|-.......+.|-+..
T Consensus 17 a~V~l~~~~--~~--~~~~~~Td~~G~f~~~~-----l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~ 73 (82)
T PF13620_consen 17 ATVTLTDQD--GG--TVYTTTTDSDGRFSFEG-----LPPGTYTLRVSAPGYQPQTQENVTVTAGQ 73 (82)
T ss_dssp -EEEET--T--TT--ECCEEE--TTSEEEEEE-----E-SEEEEEEEEBTTEE-EEEEEEEESSSS
T ss_pred EEEEEEEee--CC--CEEEEEECCCceEEEEc-----cCCEeEEEEEEECCcceEEEEEEEEeCCC
Confidence 666665442 22 25778999999998882 35589998876666554443345554433
No 299
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=28.13 E-value=1.4e+02 Score=23.83 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCccEEEecCCCCcCCCCccceEEEEc---CCceeEEEEEEeeCCC
Q psy4654 333 DKTGRVSYTLPEDHKLSYGMYPVKMVVR---GDHTSVDFYLAVVPPR 376 (559)
Q Consensus 333 ~s~gri~~~~p~~~~L~~G~y~vkmvV~---gd~t~~~~~i~v~~~~ 376 (559)
+++|..+..+|.+ .-.|.|.+.+.|. |-.+......++.+..
T Consensus 7 ~~~~~~~~~~P~~--~~dg~yt~~v~a~D~AGN~~~~~~~~~i~d~~ 51 (60)
T PF12245_consen 7 SSSGVWSTVIPEN--DADGEYTLTVTATDKAGNTSSSTTQIVIVDNT 51 (60)
T ss_pred eeccceeccccCc--cCCccEEEEEEEEECCCCEEEeeeEEEEEcCC
Confidence 6788889999977 4589999999997 6666666666665554
No 300
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=28.06 E-value=2.1e+02 Score=27.37 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=24.1
Q ss_pred EEEEEeCCCccEEEecCCCCcCCCCccceEEEEc
Q psy4654 327 MSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR 360 (559)
Q Consensus 327 ~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~ 360 (559)
--+..||.+|+++|.+|.. |.|-|+-+.+
T Consensus 184 ~~~~~TD~~G~~~~~~~~~-----G~wli~a~~~ 212 (215)
T PF10670_consen 184 AKTLKTDANGRATFTLPRP-----GLWLIRASHK 212 (215)
T ss_pred eEEEEECCCCEEEEecCCC-----EEEEEEEEEe
Confidence 5678999999999999754 9999886654
No 301
>KOG3085|consensus
Probab=27.70 E-value=1.6e+02 Score=30.27 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=61.6
Q ss_pred CCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCC--CCceeEec--CC-CCCChhhHHHHHHHHHhhc
Q psy4654 397 RDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF--PHGLVSFA--DG-LSPGFLGHKASYLKSLIQD 471 (559)
Q Consensus 397 ~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhgl--P~G~L~lr--~g-~~~dp~~~K~~~L~~L~~~ 471 (559)
..|++..++.++++.++.+|..|..+|-=+++.+... ..-|+ -+|.++.+ .| -.+||..|.. +|+.+ .
T Consensus 110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~~~l----~~~~l~~~fD~vv~S~e~g~~KPDp~If~~-al~~l--~ 182 (237)
T KOG3085|consen 110 SAWKYLDGMQELLQKLRKKGTILGIISNFDDRLRLLL----LPLGLSAYFDFVVESCEVGLEKPDPRIFQL-ALERL--G 182 (237)
T ss_pred cCceeccHHHHHHHHHHhCCeEEEEecCCcHHHHHHh----hccCHHHhhhhhhhhhhhccCCCChHHHHH-HHHHh--C
Confidence 4667788899999999999988888886666555222 12222 23444443 12 3678866654 44544 2
Q ss_pred cCCcEEEEeCC--ccchhHHHhcCCCCCcEE
Q psy4654 472 HGVVIHAAYGS--NKDVSVYTSVGLKPRSIY 500 (559)
Q Consensus 472 ~~~~i~aafGN--~~DV~aYr~vGI~~~~If 500 (559)
..-.=+...|| .+|+..-+++|+..-.+.
T Consensus 183 v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 183 VKPEECVHIGDLLENDYEGARNLGWHAILVD 213 (237)
T ss_pred CChHHeEEecCccccccHhHHHcCCEEEEEc
Confidence 22223456677 589999999999775443
No 302
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.52 E-value=5.8e+02 Score=24.80 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=55.3
Q ss_pred cCCCcccchhHHHHHHHHHHC--CC-eEEEEecCCchh----hHHHHHHHhhC-CCCCceeEecCCCCCChhhHHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQEL--GY-LIIYITGRPDMQ----QGRVLSWLSQH-NFPHGLVSFADGLSPGFLGHKASYLK 466 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~--GY-~IIYLTaRp~~~----~~~T~~WL~qh-glP~G~L~lr~g~~~dp~~~K~~~L~ 466 (559)
++.|. ..+...+.+++.++ |+ +|.|+++.+... .+..+++++++ +++........ ..+++.- ...++
T Consensus 99 V~~d~--~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 173 (271)
T cd06321 99 VTTDN--VQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVAGCKAALAKYPGIKLLSDDQNG--KGSRDGG-LRVMQ 173 (271)
T ss_pred eeech--HHHHHHHHHHHHHHhCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEeeecCC--CCChhhH-HHHHH
Confidence 44452 45667777888776 87 788998865321 12345677777 55422111111 1222211 22344
Q ss_pred HHhhc-cCCc-EEEEeCC-c-cchhHHHhcCCCCCcEEEEcCC
Q psy4654 467 SLIQD-HGVV-IHAAYGS-N-KDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 467 ~L~~~-~~~~-i~aafGN-~-~DV~aYr~vGI~~~~If~i~~~ 505 (559)
+++.. .... |++.-+. + -.+.+.++.|+ ..|.++|-.
T Consensus 174 ~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~--~di~v~g~d 214 (271)
T cd06321 174 GLLTRFPKLDGVFAINDPTAIGADLAAKQAGR--NDIKITSVD 214 (271)
T ss_pred HHHHhCCCCCEEEECCchhHHHHHHHHHHcCC--CCcEEEEec
Confidence 44332 1222 4444333 3 57788999999 467777643
No 303
>PLN02282 phosphoglycerate kinase
Probab=27.33 E-value=1.7e+02 Score=32.38 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHCCCeEEEEe--cCCch---------hhHHHHHHHhh-----------------CCCCCceeEecCCCCC
Q psy4654 404 GAVDIVRHWQELGYLIIYIT--GRPDM---------QQGRVLSWLSQ-----------------HNFPHGLVSFADGLSP 455 (559)
Q Consensus 404 GA~elv~~l~~~GY~IIYLT--aRp~~---------~~~~T~~WL~q-----------------hglP~G~L~lr~g~~~ 455 (559)
.+...++.+-++|-++|++| |||.+ .++...+-|.+ .++..|.++|.++.+-
T Consensus 44 a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~RF 123 (401)
T PLN02282 44 AAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRF 123 (401)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEecccc
Confidence 46778888889999999988 78854 12223333321 2578889999887644
Q ss_pred Chh--hHHHHHHHHHhhccCCcEEEEeCCc
Q psy4654 456 GFL--GHKASYLKSLIQDHGVVIHAAYGSN 483 (559)
Q Consensus 456 dp~--~~K~~~L~~L~~~~~~~i~aafGN~ 483 (559)
.++ ....++.+.|.+-+++++-++||-+
T Consensus 124 ~~~E~~~~~~~a~~LA~l~DvyVNDAFg~a 153 (401)
T PLN02282 124 YKEEEKNDPEFAKKLASLADVYVNDAFGTA 153 (401)
T ss_pred CcccccCHHHHHHHHHHhCcEeeechhhhh
Confidence 322 2455678888777889999999985
No 304
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=27.09 E-value=1.3e+02 Score=25.89 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCcee
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLV 447 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L 447 (559)
.+...+++.+++++|..++-+|.-+.. ..++|++++++++..+
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~~---~~~~~~~~~~~~~~~~ 87 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDPE---EIKQFLEEYGLPFPVL 87 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSHH---HHHHHHHHHTCSSEEE
T ss_pred hhHHHHHhhhhccceEEeeeccccccc---chhhhhhhhccccccc
Confidence 345678888889999999999885444 7788999888776543
No 305
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=27.00 E-value=2.9e+02 Score=30.61 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEe--cCCchh-----hHHHHHHHhh---------------------CCCCCceeEecCCCC
Q psy4654 403 AGAVDIVRHWQELGYLIIYIT--GRPDMQ-----QGRVLSWLSQ---------------------HNFPHGLVSFADGLS 454 (559)
Q Consensus 403 ~GA~elv~~l~~~GY~IIYLT--aRp~~~-----~~~T~~WL~q---------------------hglP~G~L~lr~g~~ 454 (559)
..++..++.+.++|-+++++| |||.+. -+...++|.+ .++..|.+++.++.+
T Consensus 36 ~~~lpTI~~l~~~gakvvl~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~R 115 (389)
T PRK00073 36 RAALPTIKYLLEKGAKVILLSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVR 115 (389)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccC
Confidence 347788999999999999998 788431 1122333432 257888899988765
Q ss_pred CChhh--HHHHHHHHHhhccCCcEEEEeCCc
Q psy4654 455 PGFLG--HKASYLKSLIQDHGVVIHAAYGSN 483 (559)
Q Consensus 455 ~dp~~--~K~~~L~~L~~~~~~~i~aafGN~ 483 (559)
-.+++ -..++.+.|.+-+++++-++||-+
T Consensus 116 f~~~E~~~d~~~a~~LA~l~DiyVNDAFg~a 146 (389)
T PRK00073 116 FNKGEEKNDPELAKKLASLGDVFVNDAFGTA 146 (389)
T ss_pred cCcccccCHHHHHHHHHHhCCEEEECchhhh
Confidence 43322 234677788777889999999984
No 306
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.94 E-value=6.2e+02 Score=24.96 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=55.0
Q ss_pred cCCCcccchhHHHHHHHHHHC--CC-eEEEEecCCchh--hHH---HHHHHhhCC-CCCceeEecCCCCCChhhHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQEL--GY-LIIYITGRPDMQ--QGR---VLSWLSQHN-FPHGLVSFADGLSPGFLGHKASYL 465 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~--GY-~IIYLTaRp~~~--~~~---T~~WL~qhg-lP~G~L~lr~g~~~dp~~~K~~~L 465 (559)
++.|. ..+...+.+++.++ |+ +|.|+++.+... .++ -++.|++++ ++. +....+ ..+.+... ..+
T Consensus 101 v~~d~--~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~--~~~~~~-~~~~~~~~-~~~ 174 (272)
T cd06313 101 LAPDN--YFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEV--VDEQPA-NWDVSKAA-RIW 174 (272)
T ss_pred ECCCc--HHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEE--EeccCC-CCCHHHHH-HHH
Confidence 44553 55667777877777 87 899999876432 123 345566664 321 111111 12222222 233
Q ss_pred HHHhhc-cCCcEEEEeCC--c-cchhHHHhcCCCCCcEEEEcCC
Q psy4654 466 KSLIQD-HGVVIHAAYGS--N-KDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 466 ~~L~~~-~~~~i~aafGN--~-~DV~aYr~vGI~~~~If~i~~~ 505 (559)
+.+++. .......+.++ + -.+.+.++.|+ ..|.+||=.
T Consensus 175 ~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~--~di~vvgfd 216 (272)
T cd06313 175 ETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGR--TKIVIGGVD 216 (272)
T ss_pred HHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCC--CceEEEeec
Confidence 443322 22333444444 3 46788899999 778888754
No 307
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=26.59 E-value=5.8e+02 Score=24.49 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch---hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM---QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~---~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~ 474 (559)
..++..+.+.+.++|| +|.|+++.+.. ..++ -++.++++++....+.... .+++.-+ ..+.++++....
T Consensus 99 ~~~~~~~~~~l~~~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~ 174 (259)
T cd01542 99 YGAGYELGEYLAQQGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGICPPNIVETD---FSYESAY-EAAQELLEPQPP 174 (259)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCCChHHeeecc---CchhhHH-HHHHHHhcCCCC
Confidence 5667778888888998 66777654321 1222 3456677776222222211 1222222 234444432114
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
..+.+.++ + ..+.+.++.|+. |..|-++|-.
T Consensus 175 ~~i~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d 209 (259)
T cd01542 175 DAIVCATDTIALGAMKYLQELGRRIPEDISVAGFG 209 (259)
T ss_pred CEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 44555555 3 466778889987 3667777643
No 308
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=26.52 E-value=7e+02 Score=25.39 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
..+...+.++|.++|| +|.|+++.+... . +.-+++|+++|++..+...... ..+.+. =...++.+++.. ..
T Consensus 167 ~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~ 244 (342)
T PRK10014 167 MQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLEC-TSSQKQ-AAEAITALLRHNPTI 244 (342)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecC-CCChHH-HHHHHHHHHcCCCCC
Confidence 5567788899999998 788998765422 1 2346788889988654332221 111111 113344444321 22
Q ss_pred cEEEEeCCc---cchhHHHhcCCCCC----------cEEEEcC
Q psy4654 475 VIHAAYGSN---KDVSVYTSVGLKPR----------SIYIVGK 504 (559)
Q Consensus 475 ~i~aafGN~---~DV~aYr~vGI~~~----------~If~i~~ 504 (559)
.-+.+.++. -.+.+..+.|+... .|-+||=
T Consensus 245 ~ai~~~nd~~A~g~~~~l~~~g~~vp~~~~~~~~p~di~vigf 287 (342)
T PRK10014 245 SAVVCYNETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAF 287 (342)
T ss_pred CEEEECCcHHHHHHHHHHHHcCCCCCCccccccccCceEEEEe
Confidence 333344442 23455667887532 5666664
No 309
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=26.06 E-value=5.9e+02 Score=24.43 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCchh--h---HHHHHHHhhCCCCCcee-EecCCCCCChhhHHHHHHHHHhhcc-C
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDMQ--Q---GRVLSWLSQHNFPHGLV-SFADGLSPGFLGHKASYLKSLIQDH-G 473 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~---~~T~~WL~qhglP~G~L-~lr~g~~~dp~~~K~~~L~~L~~~~-~ 473 (559)
..++....+++.++|+ +|.|+++++... . +..++.+++++++.... .... ..+++ .-.+.++.++... .
T Consensus 105 ~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~l~~~~~ 181 (268)
T cd06271 105 EAAAYQAVRRLIALGHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSG--DMTEE-GGYAAAAELLALPDR 181 (268)
T ss_pred HHHHHHHHHHHHHcCCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeC--CCChH-HHHHHHHHHHhCCCC
Confidence 4556677788888887 788888775431 1 23456777888765332 2222 12222 2233455554321 2
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCCC-CcEEEEcC
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLKP-RSIYIVGK 504 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~~-~~If~i~~ 504 (559)
...+.+.++ + -.+.+.++.|+.. .+|=+|+-
T Consensus 182 ~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~ 216 (268)
T cd06271 182 PTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGF 216 (268)
T ss_pred CCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEe
Confidence 333333344 2 3557888889753 44555543
No 310
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=25.59 E-value=1.6e+02 Score=24.36 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=29.1
Q ss_pred EEEeCCCc---cEEEecCCCCcCCCCccceEEEEc---CCceeEEEEEEe
Q psy4654 329 TEVTDKTG---RVSYTLPEDHKLSYGMYPVKMVVR---GDHTSVDFYLAV 372 (559)
Q Consensus 329 t~~t~s~g---ri~~~~p~~~~L~~G~y~vkmvV~---gd~t~~~~~i~v 372 (559)
...+|.+| .+...-+.+-.+.+|.|.|.+.+. |-...|...|+|
T Consensus 32 p~~~Dn~~~~~~~~~~~~~g~~f~~G~t~V~ytA~D~~GN~a~C~f~V~V 81 (81)
T PF02494_consen 32 PTATDNSGSIVSITCNHPPGDLFPVGTTTVTYTATDAAGNSATCSFTVTV 81 (81)
T ss_pred CEEEecCCceEeeeccCCCCceEeeceEEEEEEEEECCCCEEEEEEEEEC
Confidence 34667777 333334455678999999999997 555666665543
No 311
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=25.56 E-value=7e+02 Score=26.06 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHhhCCCCCceeEecCCCCCChhh--HHHHHHHHHhhccCCcEEE-------------------EeCCccchhHHHhc
Q psy4654 434 LSWLSQHNFPHGLVSFADGLSPGFLG--HKASYLKSLIQDHGVVIHA-------------------AYGSNKDVSVYTSV 492 (559)
Q Consensus 434 ~~WL~qhglP~G~L~lr~g~~~dp~~--~K~~~L~~L~~~~~~~i~a-------------------afGN~~DV~aYr~v 492 (559)
.+-|.+|+++...+++......++.. .....++.|.+..-+||.. .|+|...++++-+.
T Consensus 110 ~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~ 189 (284)
T cd04256 110 EAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAV 189 (284)
T ss_pred HHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHH
Confidence 34456789988888765443333322 3455666665433346665 23566677788877
Q ss_pred CCCCCcEEEEcCCCcc
Q psy4654 493 GLKPRSIYIVGKVSKK 508 (559)
Q Consensus 493 GI~~~~If~i~~~~~~ 508 (559)
-+.+.+++++-...+.
T Consensus 190 ~l~Ad~Li~lTDVdGV 205 (284)
T cd04256 190 ELKADLLILLSDVDGL 205 (284)
T ss_pred HcCCCEEEEEeCCCee
Confidence 8888888775544333
No 312
>PLN02891 IMP cyclohydrolase
Probab=25.50 E-value=84 Score=36.03 Aligned_cols=91 Identities=16% Similarity=0.052 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCCcEEEEeCC
Q psy4654 403 AGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGVVIHAAYGS 482 (559)
Q Consensus 403 ~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~i~aafGN 482 (559)
.|++++.+.|.++|++||=-. -|...|+++|+|--.|.=--| =||. --.-+|.|-+...--|.+.-+|
T Consensus 33 tgi~~fAk~L~~~gveIiSTg--------GTak~L~e~Gi~v~~Vsd~Tg---fPEi-L~GRVKTLHPkIhgGILa~r~~ 100 (547)
T PLN02891 33 TDLALLANGLQELGYTIVSTG--------GTASALEAAGVSVTKVEELTN---FPEM-LDGRVKTLHPAVHGGILARRDQ 100 (547)
T ss_pred cCHHHHHHHHHHCCCEEEEcc--------hHHHHHHHcCCceeeHHhccC---Cchh-hCCcccccCchhhhhhhcCCCC
Confidence 579999999999999987543 599999999998665531101 0100 0000112211111124455556
Q ss_pred ccchhHHHhcCCCCCcEEEEcCC
Q psy4654 483 NKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 483 ~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
..+.....+.||.+-.+.+||=.
T Consensus 101 ~~h~~~l~~~~I~~IDlVvVNLY 123 (547)
T PLN02891 101 EHHMEALNEHGIGTIDVVVVNLY 123 (547)
T ss_pred HHHHHHHHHcCCCceeeEEEecc
Confidence 67777788888888888888743
No 313
>PRK09492 treR trehalose repressor; Provisional
Probab=25.27 E-value=7e+02 Score=25.02 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=53.3
Q ss_pred cchhHHHHHHHHHHCCC-eEEEEecCCch---hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccC
Q psy4654 401 VRAGAVDIVRHWQELGY-LIIYITGRPDM---QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHG 473 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY-~IIYLTaRp~~---~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~ 473 (559)
-..++..+++++.++|| +|.|+++-+.. ..++ -+++|+++|++... ...+ ...+ . -...+++++.. +
T Consensus 159 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~-~~~~--~-~~~~~~~~l~~-~ 232 (315)
T PRK09492 159 DEGAIKLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVA-ALGG-LSMQ--S-GYELVAKVLTP-E 232 (315)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCcee-ecCC-CCch--H-HHHHHHHHhhc-C
Confidence 35667788999999999 68898754321 1223 35677889997542 1111 1111 1 11234444332 3
Q ss_pred CcEEEEeCC--c-cchhHHHhcCCCCCcEEEEcC
Q psy4654 474 VVIHAAYGS--N-KDVSVYTSVGLKPRSIYIVGK 504 (559)
Q Consensus 474 ~~i~aafGN--~-~DV~aYr~vGI~~~~If~i~~ 504 (559)
..-+.+..+ + -.+.+.++.|+ ..|-+||=
T Consensus 233 ~~ai~~~~D~~A~g~~~al~~~g~--~disvig~ 264 (315)
T PRK09492 233 TTALVCATDTLALGASKYLQEQGR--DDIQVAGV 264 (315)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCC--CceEEEee
Confidence 333333344 3 46677788999 35666663
No 314
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=25.26 E-value=84 Score=28.38 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHCCCeEEEEecCC-chhhHHHHHHHhhCCCCCceeEec
Q psy4654 404 GAVDIVRHWQELGYLIIYITGRP-DMQQGRVLSWLSQHNFPHGLVSFA 450 (559)
Q Consensus 404 GA~elv~~l~~~GY~IIYLTaRp-~~~~~~T~~WL~qhglP~G~L~lr 450 (559)
-+.++++.+.+.+|.||++|-+- +..++.+++|....-+|.=-.+..
T Consensus 34 ~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv~IPs 81 (104)
T COG1436 34 ELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIVEIPS 81 (104)
T ss_pred HHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEEEeCC
Confidence 47899999999999999999986 578899999998887775443333
No 315
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=25.12 E-value=6.4e+02 Score=29.92 Aligned_cols=127 Identities=11% Similarity=0.092 Sum_probs=71.5
Q ss_pred CeeEEEeecccee-ccccccCCCcccchhHHHHHHHHHHCCCeEEEEec------------------------CCc----
Q psy4654 377 TEVVVFSVDGSFT-ASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITG------------------------RPD---- 427 (559)
Q Consensus 377 ~k~VIfDIDGTlt-~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTa------------------------Rp~---- 427 (559)
.+.||.=|=|++. +.+..+ |......+++-+..++++|+++|.+|+ |+.
T Consensus 7 ~~~iViKiGss~lt~~~~~~--~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRL--ALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELD 84 (715)
T ss_pred CCEEEEEeCcceeECCCCCC--CHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHH
Confidence 3566677766543 222111 111234566777777889999999776 122
Q ss_pred hhh----------HHHHHHHhhCCCCCceeEecCCCCCChhhH--HHHHHHHHhhccCCcEEEE----------------
Q psy4654 428 MQQ----------GRVLSWLSQHNFPHGLVSFADGLSPGFLGH--KASYLKSLIQDHGVVIHAA---------------- 479 (559)
Q Consensus 428 ~~~----------~~T~~WL~qhglP~G~L~lr~g~~~dp~~~--K~~~L~~L~~~~~~~i~aa---------------- 479 (559)
.|. ....+-+.++++....+++....-.+...+ -...++.|+...-+||...
T Consensus 85 ~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g 164 (715)
T TIGR01092 85 GKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQG 164 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccccc
Confidence 110 112233456788777776653322233232 3567777765333466643
Q ss_pred -eCCccchhHHHhcCCCCCcEEEEcCC
Q psy4654 480 -YGSNKDVSVYTSVGLKPRSIYIVGKV 505 (559)
Q Consensus 480 -fGN~~DV~aYr~vGI~~~~If~i~~~ 505 (559)
++|...++++-+.-+.+.++++.-..
T Consensus 165 ~~~d~D~lAa~lA~~l~Ad~LiilTDV 191 (715)
T TIGR01092 165 IFWDNDSLAALLALELKADLLILLSDV 191 (715)
T ss_pred eecchHHHHHHHHHHcCCCEEEEEeCC
Confidence 45556677777788888888775543
No 316
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=24.92 E-value=65 Score=30.24 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCCCeeEEEeeccceeccccccCCCccc-----------chhHHHHHHHHHHCCCeEEEEe
Q psy4654 374 PPRTEVVVFSVDGSFTASVSVTGRDPKV-----------RAGAVDIVRHWQELGYLIIYIT 423 (559)
Q Consensus 374 ~~~~k~VIfDIDGTlt~sd~~~g~D~~~-----------~~GA~elv~~l~~~GY~IIYLT 423 (559)
-..|.+|+||+++|+...-.-+++-... ..-.-+.+..|+..++-||.++
T Consensus 42 ~~~P~iV~FDmK~Tld~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~L~~yq~~H~~VILVs 102 (128)
T PRK13717 42 LNAPVTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQQKHHAVILVS 102 (128)
T ss_pred cCCCeEEEEehHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 3489999999999996653211211111 1122345666666656566554
No 317
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.15 E-value=4e+02 Score=26.38 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=41.0
Q ss_pred cCCceeEEEeeecCCCcceeee---EeEEEEe--------cCCC----CcEEEEEEEEeCCCccEEEecCCCCcCCCCcc
Q psy4654 289 EGLPQTLVARFMYGPFDMFTLT---VDVHLIK--------EPPS----GEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMY 353 (559)
Q Consensus 289 ~~~~~~~~~~F~yg~~d~~~l~---vdi~~~~--------~~~~----g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y 353 (559)
.|.+-+|.|+.. . .+-..+. |||.=.. .+.. ..|..-|..+||.+|+.+|.- +.+|.|
T Consensus 33 ~G~~l~l~G~V~-D-~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~T-----i~Pg~Y 105 (185)
T cd03463 33 AGERITLEGRVY-D-GDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTT-----VKPGAV 105 (185)
T ss_pred CCCEEEEEEEEE-C-CCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEE-----EcCCCc
Confidence 377888889886 2 3444554 7775433 1121 467778999999999998873 677888
Q ss_pred ce
Q psy4654 354 PV 355 (559)
Q Consensus 354 ~v 355 (559)
+.
T Consensus 106 ~~ 107 (185)
T cd03463 106 PG 107 (185)
T ss_pred CC
Confidence 84
No 318
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=23.99 E-value=1.4e+02 Score=26.40 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHCCCeEEEEecCC---chhhHHHHHHHhhCCCCCc
Q psy4654 402 RAGAVDIVRHWQELGYLIIYITGRP---DMQQGRVLSWLSQHNFPHG 445 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY~IIYLTaRp---~~~~~~T~~WL~qhglP~G 445 (559)
.+...++++++.++|..+|.++.-. +...+..++|++++++++-
T Consensus 42 ~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 42 LPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred HHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 4556788888888888999887521 2345677888988888764
No 319
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=23.82 E-value=3.2e+02 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=35.9
Q ss_pred HHHHHHHHCCCeEE--EEecCCch--hhHHHHHHHh---hCCCCCceeEec
Q psy4654 407 DIVRHWQELGYLII--YITGRPDM--QQGRVLSWLS---QHNFPHGLVSFA 450 (559)
Q Consensus 407 elv~~l~~~GY~II--YLTaRp~~--~~~~T~~WL~---qhglP~G~L~lr 450 (559)
.....++..||.++ |||+++.. .+..|..|++ .+|+-.-+|+.-
T Consensus 24 ~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~pIyq~ 74 (212)
T cd06418 24 ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFPIYQG 74 (212)
T ss_pred HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEC
Confidence 55677889999876 99998776 7889999997 478888888864
No 320
>KOG4549|consensus
Probab=23.21 E-value=2.4e+02 Score=26.84 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=54.6
Q ss_pred cceEEEEcCCceeEEEEEEeeCCCCeeEEEeeccceeccccccCCC---cccchhHHHHHHHHHHCCCeEEEEecCCchh
Q psy4654 353 YPVKMVVRGDHTSVDFYLAVVPPRTEVVVFSVDGSFTASVSVTGRD---PKVRAGAVDIVRHWQELGYLIIYITGRPDMQ 429 (559)
Q Consensus 353 y~vkmvV~gd~t~~~~~i~v~~~~~k~VIfDIDGTlt~sd~~~g~D---~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~ 429 (559)
||--|+.-+|-| +|| ..|.+++|++|--+-..+|++ +-..+.+...+..++++|-.++..| .-+.
T Consensus 4 ~p~~~~fdldyt-------iwP---~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~AS--Rt~a 71 (144)
T KOG4549|consen 4 KPEAMQFDLDYT-------IWP---RLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHAS--RTMA 71 (144)
T ss_pred CCceeEEeccce-------eee---EEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEec--CCCC
Confidence 444455555543 554 578899999997776655554 3345678889999999998776653 3455
Q ss_pred hHHHHHHHhhCCCCCce
Q psy4654 430 QGRVLSWLSQHNFPHGL 446 (559)
Q Consensus 430 ~~~T~~WL~qhglP~G~ 446 (559)
-+...+-|+.-++++..
T Consensus 72 p~iA~q~L~~fkvk~~G 88 (144)
T KOG4549|consen 72 PQIASQGLETFKVKQTG 88 (144)
T ss_pred HHHHHHHHHHhccCccc
Confidence 56667778776665443
No 321
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=22.91 E-value=2.6e+02 Score=24.48 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=36.0
Q ss_pred EeEEEEe-cCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEc-CCceeEEEEEEe-eCCCCeeEEEeecc
Q psy4654 311 VDVHLIK-EPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVR-GDHTSVDFYLAV-VPPRTEVVVFSVDG 386 (559)
Q Consensus 311 vdi~~~~-~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~-gd~t~~~~~i~v-~~~~~k~VIfDIDG 386 (559)
++|-++. . .|+ .+++-.||++|...|+.. .-|.-.+++ |+. .+++-+ |...-..==|||.|
T Consensus 31 a~V~l~~~~--~~~--~l~~g~TD~~G~a~~~~~--------~~~~~viA~~~~d---~s~l~l~~~~~ld~s~Fdv~g 94 (97)
T PF11974_consen 31 AEVELYDSR--NGQ--VLASGKTDADGFASFDST--------KKPFLVIARKGGD---FSFLPLDWGSALDLSRFDVGG 94 (97)
T ss_pred CEEEEEECC--CCc--EeeeeeeCCCceEEecCC--------CCCEEEEEEECCc---EEEEEcCCCCCCChhHCCCCC
Confidence 6666665 3 233 889999999999999864 334444444 222 245555 44444444455544
No 322
>PRK10638 glutaredoxin 3; Provisional
Probab=22.89 E-value=4.3e+02 Score=21.68 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=24.5
Q ss_pred eEEEEecCCchhhHHHHHHHhhCCCCCceeEe
Q psy4654 418 LIIYITGRPDMQQGRVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 418 ~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~l 449 (559)
+|.+.|...=.....++.||+++|+|+..+-+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv 34 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPI 34 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEEC
Confidence 35566666666788999999999999976544
No 323
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=22.86 E-value=6.8e+02 Score=24.01 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=54.2
Q ss_pred cCCCcccchhHHHHHHHHHHC--CC-eEEEEecCCch--hh---HHHHHHHhhC-CCCCceeEecCCCCCChhhHHHHHH
Q psy4654 395 TGRDPKVRAGAVDIVRHWQEL--GY-LIIYITGRPDM--QQ---GRVLSWLSQH-NFPHGLVSFADGLSPGFLGHKASYL 465 (559)
Q Consensus 395 ~g~D~~~~~GA~elv~~l~~~--GY-~IIYLTaRp~~--~~---~~T~~WL~qh-glP~G~L~lr~g~~~dp~~~K~~~L 465 (559)
++.|. ..++..+++++.++ |+ +|.++++.+.. .. +..++.|++| ++.... ...+ ..+.+.... .+
T Consensus 99 v~~d~--~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~--~~~~-~~~~~~~~~-~~ 172 (268)
T cd06323 99 IASDN--VAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEVVDKYPGLKVVA--SQPA-DFDRAKGLN-VM 172 (268)
T ss_pred EccCc--HHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEe--cccC-CCCHHHHHH-HH
Confidence 44452 44566777888777 77 78899886543 22 3335677775 554211 1111 122222222 23
Q ss_pred HHHhh-ccCCcEEEEeCC--c-cchhHHHhcCCCCCcEEEEcCCC
Q psy4654 466 KSLIQ-DHGVVIHAAYGS--N-KDVSVYTSVGLKPRSIYIVGKVS 506 (559)
Q Consensus 466 ~~L~~-~~~~~i~aafGN--~-~DV~aYr~vGI~~~~If~i~~~~ 506 (559)
.+++. ........+.++ + -.+.+.++.|+ .+|-+||-.+
T Consensus 173 ~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~--~di~iig~d~ 215 (268)
T cd06323 173 ENILQAHPDIKGVFAQNDEMALGAIEALKAAGK--DDVKVVGFDG 215 (268)
T ss_pred HHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCC--CCcEEEEeCC
Confidence 33332 222333444444 3 35677888999 6677776543
No 324
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.94 E-value=1.2e+02 Score=33.82 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred ccchhHH-HHHHHHHHCCC-eEEEEecCCchhhHHHHHHHhhC
Q psy4654 400 KVRAGAV-DIVRHWQELGY-LIIYITGRPDMQQGRVLSWLSQH 440 (559)
Q Consensus 400 ~~~~GA~-elv~~l~~~GY-~IIYLTaRp~~~~~~T~~WL~qh 440 (559)
+||.|+. ++++.+...+- +|+|+|=.|..+++....+...+
T Consensus 370 PPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~~g 412 (432)
T COG2265 370 PPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILASTG 412 (432)
T ss_pred CCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhCC
Confidence 5899999 89999987765 69999999999999999888865
No 325
>KOG4752|consensus
Probab=21.87 E-value=31 Score=23.26 Aligned_cols=9 Identities=56% Similarity=1.099 Sum_probs=7.0
Q ss_pred hhhhhhcce
Q psy4654 261 REKWIRKRT 269 (559)
Q Consensus 261 ~~~w~~~rt 269 (559)
|+||.+||-
T Consensus 2 r~kwrkkrm 10 (26)
T KOG4752|consen 2 RAKWRKKRM 10 (26)
T ss_pred chHHHHHHH
Confidence 689988874
No 326
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.86 E-value=7.1e+02 Score=23.85 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=60.2
Q ss_pred CCeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCC-eEEEEecCCchh--hH---HHHHHHhhCCCCCceeEe
Q psy4654 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGY-LIIYITGRPDMQ--QG---RVLSWLSQHNFPHGLVSF 449 (559)
Q Consensus 376 ~~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~---~T~~WL~qhglP~G~L~l 449 (559)
+.++|.+|.|-+- .....++.| -...+..+.+.+.++|+ +|.|+++++... .+ .-++++++++++......
T Consensus 77 ~ipvV~~~~~~~~-~~~~~v~~d--~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~ 153 (266)
T cd06278 77 GIPVVLINRYVDG-PGVDAVCSD--NYEAGRLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVVEEA 153 (266)
T ss_pred CCCEEEECCccCC-CCCCEEEEC--hHHHHHHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhhhcc
Confidence 4455666544210 001224445 34556777888888898 899999886532 22 335666777776211111
Q ss_pred cCCCCCChhhHHHHHHHHHhhc-cCCcEEEEeCC--c-cchhHHHhc-CCC-CCcEEEEcC
Q psy4654 450 ADGLSPGFLGHKASYLKSLIQD-HGVVIHAAYGS--N-KDVSVYTSV-GLK-PRSIYIVGK 504 (559)
Q Consensus 450 r~g~~~dp~~~K~~~L~~L~~~-~~~~i~aafGN--~-~DV~aYr~v-GI~-~~~If~i~~ 504 (559)
. ..+.+.. ...+++++.. .....+.+.++ + ..+.+.++. |+. |..|-+++-
T Consensus 154 ~---~~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~l~~~~~~~~p~di~i~~~ 210 (266)
T cd06278 154 G---DYSYEGG-YEAARRLLASRPRPDAIFCANDLLAIGVMDAARQEGGLRVPEDVSVIGF 210 (266)
T ss_pred C---CCCHHHH-HHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhcCCCCccceEEEEe
Confidence 1 1222121 2234444332 12344444444 2 355666654 454 445555553
No 327
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.46 E-value=7.5e+02 Score=23.97 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHCCC-eEEEEecCCchh--hHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhc-cC
Q psy4654 401 VRAGAVDIVRHWQELGY-LIIYITGRPDMQ--QGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQD-HG 473 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY-~IIYLTaRp~~~--~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~-~~ 473 (559)
-..++....++|.++|| +|.|+++.+... .++ -++.|++++++........+. .+.+ .-...+..+++. ..
T Consensus 100 ~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~ 177 (269)
T cd06293 100 NEQGGRLATRHLARAGHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGD-YTRE-FGRAAAAQLLARGDP 177 (269)
T ss_pred CHHHHHHHHHHHHHCCCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEecC-CCHH-HHHHHHHHHHcCCCC
Confidence 35667788888888999 788998765432 222 345566788775432222111 1111 122345555432 12
Q ss_pred Cc-EEEEeCC-c-cchhHHHhcCCC-CCcEEEEcC
Q psy4654 474 VV-IHAAYGS-N-KDVSVYTSVGLK-PRSIYIVGK 504 (559)
Q Consensus 474 ~~-i~aafGN-~-~DV~aYr~vGI~-~~~If~i~~ 504 (559)
.. |++.-+. + -.+.+.++.|+. |..|-+++=
T Consensus 178 ~~ai~~~~d~~a~g~~~al~~~g~~vp~di~i~g~ 212 (269)
T cd06293 178 PTAIFAASDEIAIGLLEVLRERGLSIPGDMSLVGF 212 (269)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEee
Confidence 22 4443333 3 467888899985 444555553
No 328
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=21.27 E-value=50 Score=30.77 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCeEE--EEecCCch----hhHHHHHHHh---hCCCCCceeEecC
Q psy4654 407 DIVRHWQELGYLII--YITGRPDM----QQGRVLSWLS---QHNFPHGLVSFAD 451 (559)
Q Consensus 407 elv~~l~~~GY~II--YLTaRp~~----~~~~T~~WL~---qhglP~G~L~lr~ 451 (559)
..++.|++.||.++ |||++... ++..|..|++ .+|+-.-+|+.-.
T Consensus 8 ~~~~~l~~aGy~~VgrYl~~~~~~~~~~~k~Lt~~e~~~i~~~Gl~i~pIyq~~ 61 (136)
T PF08924_consen 8 ASAQALKAAGYRAVGRYLSGSRGGCAMRQKNLTAGEVQDIRAAGLRIFPIYQGG 61 (136)
T ss_dssp HHHHHHHHT---SEEEESS-BTTTB-----B--HHHHHHHHHTT-EEEEEE---
T ss_pred HHHHHHHHCCCCEEEEEcCCCCCCcccccCCCCHHHHHHHHHCCCEEEEEEecc
Confidence 56788899999865 99999865 4699999986 4788777777653
No 329
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=21.20 E-value=3.3e+02 Score=26.96 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhccCCc--EEEEeCC-ccchhHHHhcCCCCCcEEEEcC
Q psy4654 460 HKASYLKSLIQDHGVV--IHAAYGS-NKDVSVYTSVGLKPRSIYIVGK 504 (559)
Q Consensus 460 ~K~~~L~~L~~~~~~~--i~aafGN-~~DV~aYr~vGI~~~~If~i~~ 504 (559)
.|...++.+++..++. =..+||| .+|+.+.+.+|+ -+.++-
T Consensus 199 ~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~----~vamgn 242 (272)
T PRK10530 199 SKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGL----GVAMGN 242 (272)
T ss_pred ChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCc----eEEecC
Confidence 4777888776544543 3689999 799999999997 345553
No 330
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=21.08 E-value=7.5e+02 Score=23.83 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHHHCCC-eEEEEecCCch---h---hHHHHHHHhhCCCCCceeEe-cCCCCCChhhHHHHHHHHHhhc-
Q psy4654 401 VRAGAVDIVRHWQELGY-LIIYITGRPDM---Q---QGRVLSWLSQHNFPHGLVSF-ADGLSPGFLGHKASYLKSLIQD- 471 (559)
Q Consensus 401 ~~~GA~elv~~l~~~GY-~IIYLTaRp~~---~---~~~T~~WL~qhglP~G~L~l-r~g~~~dp~~~K~~~L~~L~~~- 471 (559)
-..++..+.+++.++|+ +|.|+++.... . .+..+++|++++++...... ......+. -...+++++..
T Consensus 100 ~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 176 (268)
T cd06273 100 NREAGRLAARHLIALGHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIAD---GRAALRQLLEQP 176 (268)
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHH---HHHHHHHHHcCC
Confidence 36677788888888888 78899876422 2 23346788889877544322 22111111 11234444321
Q ss_pred cCC-cEEEEeCC-c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 472 HGV-VIHAAYGS-N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 472 ~~~-~i~aafGN-~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
... -|++..+. + ..+.+.++.|+. +..|-+|+-.
T Consensus 177 ~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d 214 (268)
T cd06273 177 PRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFD 214 (268)
T ss_pred CCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 112 24443333 3 466788889985 4577666644
No 331
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.04 E-value=77 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=15.0
Q ss_pred hhhHHHHHHHhhCCCCCce
Q psy4654 428 MQQGRVLSWLSQHNFPHGL 446 (559)
Q Consensus 428 ~~~~~T~~WL~qhglP~G~ 446 (559)
+-.+..++||.+||+|..+
T Consensus 4 Ws~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPK 22 (38)
T ss_pred CCHHHHHHHHHHcCCCCCC
Confidence 3456789999999998764
No 332
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=20.61 E-value=7.2e+02 Score=23.44 Aligned_cols=103 Identities=24% Similarity=0.267 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCc--hhhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhccCCc
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPD--MQQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDHGVV 475 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~--~~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~~~~ 475 (559)
...+..+.+.+.++|+ +|.++++.+. ....+ .++.+++++++...+..... ..+.......+.+-+.......
T Consensus 101 ~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 179 (264)
T cd06267 101 RAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEG-DFSEESGYEAARELLASGERPT 179 (264)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEec-ccchhhHHHHHHHHHhcCCCCc
Confidence 3445666678888787 7889988765 33333 34566677764433322211 1112222332222232211233
Q ss_pred EEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 476 IHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 476 i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.+.+.++ + ..+.+.++.|+. +..|.+++-.
T Consensus 180 ~i~~~~~~~a~~~~~al~~~g~~~~~~i~i~~~d 213 (264)
T cd06267 180 AIFAANDLMAIGALRALRELGLRVPEDVSVVGFD 213 (264)
T ss_pred EEEEcCcHHHHHHHHHHHHhCCCCCCceEEEeeC
Confidence 3344444 2 466788899986 3566666543
No 333
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=20.60 E-value=1.6e+02 Score=27.68 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHC--CCeEEEEecCCchhhHHHHHHHhhC-CCCCcee
Q psy4654 402 RAGAVDIVRHWQEL--GYLIIYITGRPDMQQGRVLSWLSQH-NFPHGLV 447 (559)
Q Consensus 402 ~~GA~elv~~l~~~--GY~IIYLTaRp~~~~~~T~~WL~qh-glP~G~L 447 (559)
.+.++++++.+++. ||+| |-|+ .|.+||+++ |++.-.+
T Consensus 16 K~~l~~~a~~l~~ll~Gf~l-~AT~-------gTa~~L~~~~Gi~v~~v 56 (142)
T PRK05234 16 KDDLVAWVKAHKDLLEQHEL-YATG-------TTGGLIQEATGLDVTRL 56 (142)
T ss_pred hHHHHHHHHHHHHHhcCCEE-EEeC-------hHHHHHHhccCCeeEEE
Confidence 35588999999999 9996 5664 799999999 9987666
No 334
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=20.53 E-value=5.1e+02 Score=21.68 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=39.3
Q ss_pred CceeEEEeeecC-CCcceeeeEeEEEEecCCCCcEEEEEEEEeCCCccEEEecCCCCcCCCCccceEEEEcCCce
Q psy4654 291 LPQTLVARFMYG-PFDMFTLTVDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDHT 364 (559)
Q Consensus 291 ~~~~~~~~F~yg-~~d~~~l~vdi~~~~~~~~g~w~~~~t~~t~s~gri~~~~p~~~~L~~G~y~vkmvV~gd~t 364 (559)
..-+|+|+..=- .-++ ||++.. ..+. ..++|.+.+ +|+-+|+.+.. .++.|.+ .+.++...
T Consensus 11 ~~~~I~G~i~~~~~~~~------vyL~~~-~~~~-~~~ds~~v~-nG~F~f~~~~~---~p~~~~l-~~~~~~~~ 72 (106)
T PF14289_consen 11 KQFTIEGKIKGLPDGDK------VYLYYY-DNGK-VVIDSVVVK-NGKFSFKGPLD---EPGFYYL-SIFKGGKG 72 (106)
T ss_pred CcEEEEEEEcCCCCCCE------EEEEEe-CCCC-EEEEEEEEe-CCEEEEEEeCC---CCEEEEE-EEECCCCe
Confidence 356778877644 2232 444444 3466 889999988 89999998765 4677776 33444433
No 335
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.30 E-value=7.7e+02 Score=23.63 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHHCCC-eEEEEecCCch--hhHH---HHHHHhhCCCCCceeEecCCCCCChhhHHHHHHHHHhhcc-CC
Q psy4654 402 RAGAVDIVRHWQELGY-LIIYITGRPDM--QQGR---VLSWLSQHNFPHGLVSFADGLSPGFLGHKASYLKSLIQDH-GV 474 (559)
Q Consensus 402 ~~GA~elv~~l~~~GY-~IIYLTaRp~~--~~~~---T~~WL~qhglP~G~L~lr~g~~~dp~~~K~~~L~~L~~~~-~~ 474 (559)
...+..+.+.+.++|+ +|.++++.+.. ..++ -+++|++++++........+ ..+++.-. ..+++++... ..
T Consensus 100 ~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~ 177 (267)
T cd06284 100 VAAARLAVDHLISLGHRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEG-DFSLESGY-AAARRLLALPDRP 177 (267)
T ss_pred cHHHHHHHHHHHHcCCceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeC-CCChHHHH-HHHHHHHhCCCCC
Confidence 4455667777888888 68889887542 2223 34677788876443222211 12232211 2334443221 23
Q ss_pred cEEEEeCC--c-cchhHHHhcCCC-CCcEEEEcCC
Q psy4654 475 VIHAAYGS--N-KDVSVYTSVGLK-PRSIYIVGKV 505 (559)
Q Consensus 475 ~i~aafGN--~-~DV~aYr~vGI~-~~~If~i~~~ 505 (559)
.-+.+.++ + --+.+.++.|+. +..|.+++-.
T Consensus 178 ~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d 212 (267)
T cd06284 178 TAIFCFSDEMAIGAISALKELGLRVPEDISVVGFD 212 (267)
T ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeC
Confidence 33334444 2 467788889986 4667677654
No 336
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=3.4e+02 Score=28.34 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=45.0
Q ss_pred CeeEEEeeccceeccccccCCCcccchhHHHHHHHHHHCCCeEEEEecCCchhhHHHHHHHhhCCCCCceeEecCCCCCC
Q psy4654 377 TEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPG 456 (559)
Q Consensus 377 ~k~VIfDIDGTlt~sd~~~g~D~~~~~GA~elv~~l~~~GY~IIYLTaRp~~~~~~T~~WL~qhglP~G~L~lr~g~~~d 456 (559)
..+-|+|+.=|+. --.-|.+.++.+.++|-.|++++.| ...++..++.=++-|.+|-.-...+|.-.+
T Consensus 36 ngihIIDL~kT~~-----------~l~~A~~~v~~~~~~~g~ILfVgTK-~~a~~~V~~~A~r~g~~yV~~RwLgG~LTN 103 (252)
T COG0052 36 NGIHIIDLQKTLE-----------RLREAYKFLRRIAANGGKILFVGTK-KQAQEPVKEFAERTGAYYVNGRWLGGMLTN 103 (252)
T ss_pred CCcEEEEHHHHHH-----------HHHHHHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHHhCCceecCcccCccccC
Confidence 4556777766643 2344889999999999999999888 444455555555666666554455554333
Done!