RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4654
(559 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 3e-07
Identities = 98/600 (16%), Positives = 166/600 (27%), Gaps = 231/600 (38%)
Query: 70 DPIAVRLEPLI----SARFSLLAPVNI-PRYQQ----F----------PLGKSQSTSVAQ 110
D + R PL S LL P Q F + T+ A+
Sbjct: 2 DAYSTR--PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 111 ALLIR---MVTQKWWGSKRIDYALYCPEGLANFPTNALP----HLFHASFWESCDVIAFI 163
L+ + V+ SK + L F L H A + D
Sbjct: 60 -LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT--- 115
Query: 164 LRQVNNLL-TYFRAREIGKAP----------RKVTQKWWGSKRI-----------DY--- 198
L + L+ Y AR + K P R V + G+ ++ DY
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE---GNAQLVAIFGGQGNTDDYFEE 172
Query: 199 --ALYC--PEGLANFPTNALPHLFHAS---------FWESCDVIAFI------------- 232
LY + + + L F + +++ ++
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 233 ----------LRQIGRFDMAPAMGTDDKDLEGFNPGQPREKWIRKRTSVKIKNATANHRA 282
+ Q+ + + K L GF PG+ R +K AT +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTA------KLL-GFTPGELRS---------YLKGATG--HS 274
Query: 283 NDVIV-------------KEGLPQTLVARFMYG-------PFDMFTLTVDVHLIKEPPSG 322
++ + + + F G P ++ L +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI---LEDSLENN 331
Query: 323 EWV---------LMSTEVTDKTGRVSYTLPEDHKLSYGMY--PVKMVVRG---------- 361
E V L +V D + + LP ++ + +VV G
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 362 -----------DHTSVDF----------YLAV-VP-------PRTEVV---VFSVDGSFT 389
D + + F +L V P P ++++ + + SF
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 390 AS---VSV----TGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNF 442
A + V G D +R + I ++ I P + W + F
Sbjct: 452 AKDIQIPVYDTFDGSD--LRVLSGSISER------IVDCIIRLP-------VKWETTTQF 496
Query: 443 P--HGLVSFADGLSPGFLGHKASYLKSLIQDH----GV-VIHAAYGSNKDVSVYTSVGLK 495
H ++ F G PG AS L L + GV VI A D++ G K
Sbjct: 497 KATH-ILDF--G--PG----GASGLGVLTHRNKDGTGVRVIVA---GTLDINPDDDYGFK 544
Score = 42.7 bits (100), Expect = 3e-04
Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 45/200 (22%)
Query: 223 WESCDVIAFILRQIGRFDMAPAMGTDDKDLEGFNPGQPREKWIRKRTSVKIKNATANHRA 282
W D G F + + + +L G+ + K IR+ S I + +
Sbjct: 1646 WNRAD--NHFKDTYG-FSILDIVINNPVNLTIHFGGE-KGKRIRENYSAMIFETIVDGKL 1701
Query: 283 NDVIVKEGLPQTLVARFMYGPFDM-----FT----LTVDV---HLIKE----PP------ 320
+ + + + + + FT ++ +K P
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 321 -S-GEWV-------LMSTEVTDKT----GR-VSYTLPEDH--KLSYGMY---PVKMVVRG 361
S GE+ +MS E + G + +P D + +YGM P ++
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 362 DHTSVDFYLAVVPPRTEVVV 381
++ + + V RT +V
Sbjct: 1822 SQEALQYVVERVGKRTGWLV 1841
Score = 37.0 bits (85), Expect = 0.020
Identities = 54/342 (15%), Positives = 93/342 (27%), Gaps = 122/342 (35%)
Query: 20 MG----DNSSLAKWSSMELLNEEDESPSPSVASRQGDVIQRPPVQQVYNLFHPTDPIAVR 75
MG S A+ ++ N D + D++ PV H R
Sbjct: 1631 MGMDLYKTSKAAQ----DVWNRADNHFKDTYGFSILDIVINNPVNLT---IHFGGEKGKR 1683
Query: 76 LEPLISARFSLLAPVNIPRYQQFPLGKSQSTSVAQALLIRMVTQKWWGSKRIDYALYCPE 135
I +S + ++ GK ++ + + + Y +
Sbjct: 1684 ----IRENYSAMI------FETIVDGKLKTEKIFKEI----------NEHSTSYTFRSEK 1723
Query: 136 GLANFPTNALPHLFHASFWESCDVIAF-ILRQVNNLLTYFRAREIGKAPRKVTQKWWGSK 194
GL + P L AF L+ G
Sbjct: 1724 GLLSATQFTQPALTLME------KAAFEDLKS------------------------KGLI 1753
Query: 195 RID----------Y-ALYCPEGLANFPTNALPHLFHASFWESCDVIAFILRQIGRF--DM 241
D Y AL LA + + S E ++ ++ G
Sbjct: 1754 PADATFAGHSLGEYAALAS---LA----DVM------SI-E--SLVE-VVFYRGMTMQVA 1796
Query: 242 AP--AMGTDDKDLEGFNPGQ-----PRE------KWIRKRTS--VKIKNATANH-RANDV 285
P +G + + NPG+ +E + + KRT V+I N+ N
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI----VNYNVENQQ 1852
Query: 286 IV----KEGLPQTL--VARFM-YGPFDMFTLTVDVHL--IKE 318
V L T+ V F+ D+ L + L ++
Sbjct: 1853 YVAAGDLRAL-DTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 4e-06
Identities = 81/616 (13%), Positives = 164/616 (26%), Gaps = 237/616 (38%)
Query: 3 DLLRYSPNEGALRY-HESMGDNSSLAKWSSMELLNEEDESPSPSVASRQGDVIQRPPVQQ 61
L E ++ E + N K+ M + E PS + R ++Q
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINY---KFL-MSPIKTEQRQPSM---------MTRMYIEQ 115
Query: 62 VYNLFHPTDPIAVRLEPLISARFSLLAPVNIPRYQQFPLGKSQSTSVAQALL-IR----- 115
L+ D + A N+ R Q + + QALL +R
Sbjct: 116 RDRLY--NDN-------------QVFAKYNVSRLQPY-------LKLRQALLELRPAKNV 153
Query: 116 ----MV-TQKWW--GSKRIDYALYCPEGLANFPTNALPHLFHASFWES---CDVIAFILR 165
++ + K W + Y + C FW + C+ +L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQC-----KMDFKI--------FWLNLKNCNSPETVLE 200
Query: 166 QVNNLLTYFRAREIGKAPRKVTQKWWGSKRIDYALYCPEGLANFPTNALPHLFHASFWES 225
+ LL ++ W + R D++ + + L L + +E+
Sbjct: 201 MLQKLL------------YQIDPNW--TSRSDHSSNIKLRI-HSIQAELRRLLKSKPYEN 245
Query: 226 C-----DV-----I-AF-----IL---RQIGRFDMAPAMGTDDKDLE----GFNPGQPRE 262
C +V AF IL R D A T L+ P + +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 263 ---KWIRKRTSVKIKNATANHRANDVIVKEGLPQTLVARFMYGPFDMFTLTVDVHLIKEP 319
K++ + R D LP+ ++ P L++ I++
Sbjct: 306 LLLKYL-------------DCRPQD------LPREVLTT---NP---RRLSIIAESIRDG 340
Query: 320 PS--GEWVLMSTEVTDKTGRVSYTL--PEDHKLSYGMYPVKMVVRGDHTSVDFYLAVVPP 375
+ W ++ + S + P +++ + L+V PP
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-----------------DRLSVFPP 383
Query: 376 RTEVVVFSVDGSFTASVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLS 435
S + + + W ++ I + + S
Sbjct: 384 ---------------SAHIP---TIL------LSLIWFDV----IKSDVMVVVNKLHKYS 415
Query: 436 WLSQHNFP-----HGLVSFADGLSPGFLGHKASYLKSLIQ-DHGVVIHAAYGSNKDVSVY 489
+ + + YL+ ++ ++ +H V Y
Sbjct: 416 LVEKQPKESTISIPSI-----------------YLELKVKLENEYALH-----RSIVDHY 453
Query: 490 TSVGLKPRSIYIVGKVSKKHQSQATVLSDGY-----AAHLTALQQHGGSRPAQGNARMVL 544
+ + + D Y HL ++ RM L
Sbjct: 454 -----NIPKTFDSDDLIPPYL-------DQYFYSHIGHHLKNIEHPE---------RMTL 492
Query: 545 APKGYFGHNLS-IRRR 559
+ + + ++
Sbjct: 493 FRMVFL--DFRFLEQK 506
Score = 37.5 bits (86), Expect = 0.014
Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 45/190 (23%)
Query: 145 LPHLFHASFWESCDV--IAFILRQVNNLLTYFRAREIGKAPRKVTQKWWGSKRIDYALYC 202
L F +F ++ D + + + + L+ I + V+ +
Sbjct: 22 LSV-FEDAFVDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDAVS-------GTLRLFWT 70
Query: 203 PEGLANFPTNALPHLFHASFWESCDVI--AFILRQIGRFDMAPAMGTD---DKDLEGFNP 257
L + + F E I F++ I P+M T ++ +N
Sbjct: 71 ---LLSKQEEMV-----QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 258 GQPREKW--IRKRTSVKIKNATANHRANDVIVKEGLP----QTLVA----------RFMY 301
Q K+ R + +K++ A R ++ +G+ + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-- 180
Query: 302 GPFDMFTLTV 311
F +F L +
Sbjct: 181 -DFKIFWLNL 189
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ
hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP:
c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A
1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A*
1z88_A 2aut_A
Length = 211
Score = 37.1 bits (85), Expect = 0.007
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 403 AGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH-NFPHGLVSFADGLSPGFLGHK 461
A ++ G I ++TGR + V L+ + + P + F G K
Sbjct: 91 EVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIP-----ATNMNPVIFAGDK 145
Query: 462 ASYLK--SLIQDHGVVIHAAYGSNK-DVSVYTSVGLKPRSIYIVGKVSKKHQSQA 513
+QD + I YG + D++ VG + I + K QA
Sbjct: 146 PGQNTKSQWLQDKNIRIF--YGDSDNDITAARDVGARGIRILRASNSTYKPLPQA 198
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
unknown function; 2.20A {Bacteroides thetaiotaomicron}
SCOP: c.108.1.25
Length = 142
Score = 36.5 bits (84), Expect = 0.007
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 394 VTGRDPKV---RAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFP 443
V R P++ AV+ ++ Q+ + +I + R + W
Sbjct: 15 VEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE 67
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 35.1 bits (80), Expect = 0.046
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 12/110 (10%)
Query: 331 VTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDHTSVDFYLAVVPPRTEVVVFSVDGSFTA 390
V R Y ++ + VD LA + R + D
Sbjct: 131 VPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCD----- 185
Query: 391 SVSVTGRDPKVRAGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQH 440
+ V++ + + +GY I+ ++GR + +
Sbjct: 186 -------TDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMT 228
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY
amyloidogenesis, transport protein; HET: T44; 1.10A
{Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A
1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A*
3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A*
1tt6_A* 1tta_A 1tyr_A* ...
Length = 115
Score = 32.5 bits (74), Expect = 0.082
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDH---TSVD 367
V VH+ ++ W ++ T ++G + E+ G+Y V++ + +
Sbjct: 19 VAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEF-VEGIYKVEIDT-KSYWKALGIS 76
Query: 368 FYLAVVPPRTEVVVFSVD 385
+ VVF+ +
Sbjct: 77 PFHEHAE-----VVFTAN 89
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase,
phosphoribosylaminoimidazolesuccinocarboxamide (saicar)
SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces
cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A*
2cnv_A* 1obg_A*
Length = 306
Score = 32.6 bits (75), Expect = 0.30
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 284 DVIVKEGLPQ-----TLVARFMYGPFDMFTLTVDVHLIKEPPSGEWVLMSTEVTDKTGRV 338
DVI++ +P+ T ++ F F + V HL+ P +
Sbjct: 43 DVIMENSIPEKGILLTKLSEFW---FKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYK 99
Query: 339 SYTLPED---HKLSYGMYPVKMVVRG 361
+ HK + P++++VRG
Sbjct: 100 TQLEDRSLLVHKHK--LIPLEVIVRG 123
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne
transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP:
b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A
1tfp_A
Length = 127
Score = 30.3 bits (68), Expect = 0.56
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDH---TSVD 367
V VH+ ++ W ++ T ++G + E+ G+Y V++ + +
Sbjct: 28 VAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEF-VEGIYKVEIDT-KSYWKALGIS 85
Query: 368 FYLAVVPPRTEVVVFSVD 385
+ VVF+ +
Sbjct: 86 PFHEHAE-----VVFTAN 98
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport
protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A
1sn0_A 1sn5_A*
Length = 119
Score = 30.2 bits (68), Expect = 0.61
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 311 VDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVVRGDH---TSVD 367
V + + ++ G W ++T VTD TG + + E G+Y V+ +
Sbjct: 20 VALKVSQKTADGGWTQIATGVTDATGEIHNLITEQQF-PAGVYRVEFDT-KAYWTNQGST 77
Query: 368 FYLAVVPPRTEVVVFSVD 385
+ V VVF
Sbjct: 78 PFHEVAE-----VVFDAH 90
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL
domain, structur genomics, PSI-2, protein structure
initiative; 2.15A {Staphylococcus aureus subsp} SCOP:
d.58.18.13
Length = 98
Score = 29.7 bits (67), Expect = 0.67
Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 404 GAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHN 441
+ ++ +G+L+++I + G+ L +
Sbjct: 53 ANIKNTKN-GTVGFLVLHIPYISSVDFGKFEKELIERQ 89
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA
synthetase, ATP-binding, cytoplasm, ligase,
nucleotide-binding; 1.85A {Aquifex aeolicus}
Length = 111
Score = 28.7 bits (65), Expect = 1.9
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 18/61 (29%)
Query: 379 VVVFSVDG---SFTASVSVTGRDPKVRAGAVDIVRHWQEL-----GYLIIYITGRPDMQQ 430
V + S G +F VS ++ + A +++R ++ G GR D+ Q
Sbjct: 40 VFIASRKGDKINFVIGVS---KEISDKVNAKEVIREVGKVLKGGGG-------GRADLAQ 89
Query: 431 G 431
G
Sbjct: 90 G 90
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 30.4 bits (67), Expect = 2.2
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 18/120 (15%)
Query: 300 MYGPFDMFTLTVDVHLIKEPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYGMYPVKMVV 359
+ P + ++ V + P + + G L G++ + + V
Sbjct: 128 LKPPARVKSVYVTI----RDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEV 183
Query: 360 RGDHT-----SVDFYLAVVPPRTEVVV------FSVDGSFTASVSVTGRDPKVRAGAVDI 408
G+ V Y V +V V + ++ K G +
Sbjct: 184 EGEELVSKTFEVKEY---VLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKV 240
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
irreversible PROT inhibitor, conformational change,
blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo
sapiens}
Length = 1451
Score = 30.1 bits (66), Expect = 2.6
Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 11/218 (5%)
Query: 293 QTLVARFMYGPFDMFTLTVDVHLIK-EPPSGEWVLMSTEVTDKTGRVSYTLPEDHKLSYG 351
QT+ R + + L + L+ + P G + + G ++ P + G
Sbjct: 119 QTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQG 178
Query: 352 MYPVKMVVRGDHTSVDFYLAV---VPPRTEVVV------FSVDGSFTASVSVTGRDPKVR 402
Y V V + + V V P+ EV V ++ SV K
Sbjct: 179 SYKVV-VQKKSGGRTEHPFTVEEFVLPKFEVQVTVPKIITILEEEMNVSVCGLYTYGKPV 237
Query: 403 AGAVDIVRHWQELGYLIIYITGRPDMQQGRVLSWLSQHNFPHGLVSFADGLSPGFLGHKA 462
G V + + + + S F + + L K
Sbjct: 238 PGHVTVSICRKYSDASDCHGEDSQAFCEKFSGQLNSHGCFYQQVKTKVFQLKRKEYEMKL 297
Query: 463 SYLKSLIQDHGVVIHAAYGSNKDVSVYTSVGLKPRSIY 500
+ ++ VV S++ T + +
Sbjct: 298 HTEAQIQEEGTVVELTGRQSSEITRTITKLSFVKVDSH 335
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV,
IG-like domain, viral; NMR {Enterobacteria phage lambda}
Length = 91
Score = 27.8 bits (62), Expect = 2.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 371 AVVPPRTEVVVFSVDGSFTASVSVT 395
V + + V S +G F A +T
Sbjct: 63 GVAAGKVNIPVVSGNGEFAAVAEIT 87
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A
{Mycobacterium abscessus}
Length = 301
Score = 28.8 bits (65), Expect = 5.0
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 22/85 (25%)
Query: 282 ANDVIVKEGLPQ-----TLVARFMYGPFDMFTLTVDVHLIKEPPSGEWVLMSTEVTDKTG 336
A D ++ +P T ++ F F + LTV HL P + EV +
Sbjct: 41 AFDFVLDTPIPDKGRILTAMSVFF---FGL--LTVPNHLAGPPDDPR---IPEEVLGRAL 92
Query: 337 RVSYTLPEDHKLSYGMYPVKMVVRG 361
V +L M PV+ V RG
Sbjct: 93 LV-------RRLD--MLPVECVARG 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.419
Gapped
Lambda K H
0.267 0.0386 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,796,841
Number of extensions: 540616
Number of successful extensions: 1191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1189
Number of HSP's successfully gapped: 25
Length of query: 559
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 461
Effective length of database: 3,965,535
Effective search space: 1828111635
Effective search space used: 1828111635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.8 bits)