BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4655
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound
Phospholipid At 2.0 Angstroms Resolution
Length = 270
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 62/270 (22%)
Query: 1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
+L+KEYR+ LP++VDEY++ QLY +A+ S+ E+ G G GVE+L NEPY+ D+ G KGQ
Sbjct: 1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPYEKDD---GEKGQ 56
Query: 61 KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRI----PLPLTV--DEYKIAQLYM 114
T KIYH+ S +P +++ L P+ AL + + P TV +EY + + ++
Sbjct: 57 YTH-------KIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEY-MKEDFL 108
Query: 115 IAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSD 174
I I + H+ LG + KL P +
Sbjct: 109 IK---------IETWHK-----------PDLGTQENVHKLEPE-------------AWKH 135
Query: 175 LRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSH 234
+ + +++ D + Q+ DY EEDP+ + S TGRGPL NW E V+
Sbjct: 136 VEAIYIDIAD--RSQVLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQE---------LVNQ 184
Query: 235 DNKSMMCAYKLCKIQLNYWGIQSKGHDQPH 264
+ MCAYKL ++ +WG+Q+K + H
Sbjct: 185 KDCPYMCAYKLVTVKFKWWGLQNKVENFIH 214
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 39/227 (17%)
Query: 290 ENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVK-NFKLEIT 348
E + HKIYH+ S +P +++ L P+ AL + E+AWNAYP+ +TV + +++K +F ++I
Sbjct: 53 EKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIE 112
Query: 349 TKYLPESVLAWAWQDEWNGLNIEDIRKIERDT---AEALKLKMSDANVDMTAKKSDTTTF 405
T + P+ E++ K+E + EA+ + ++D + + +K
Sbjct: 113 TWHKPDLGTQ------------ENVHKLEPEAWKHVEAIYIDIADRS-QVLSKDYKAEED 159
Query: 406 RGAFESVIRQHYPSMMGRGHDQPHNGQAL--------MCAYKLCRVQFHYWGMQTKLEKF 457
F+SV GRG P+ Q L MCAYKL V+F +WG+Q K+E F
Sbjct: 160 PAKFKSV-------KTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENF 212
Query: 458 VHEFGKVAGKKRGLASV--LAWAWQDEWNGLNIEDIRKIERDTAEAL 502
+H+ +KR + + W D+W L ++DIR++E +T L
Sbjct: 213 IHK-----QEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQL 254
>pdb|1T27|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine
Length = 271
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 62/270 (22%)
Query: 1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
+L+KEYR+ LP++VDEY++ QLY +A+ S+ E+ G G GVE+L NEPY+ D+ G KGQ
Sbjct: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPYEKDD---GEKGQ 57
Query: 61 KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRI----PLPLTV--DEYKIAQLYM 114
T KIYH+ S +P +++ L P+ AL + + P TV +EY + + ++
Sbjct: 58 YTH-------KIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEY-MKEDFL 109
Query: 115 IAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSD 174
I I + H+ LG + KL P +
Sbjct: 110 IK---------IETWHK-----------PDLGTQENVHKLEPE-------------AWKH 136
Query: 175 LRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSH 234
+ + +++ D + Q+ DY EEDP+ + S TGRGPL NW E V+
Sbjct: 137 VEAIYIDIAD--RSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE---------LVNQ 185
Query: 235 DNKSMMCAYKLCKIQLNYWGIQSKGHDQPH 264
+ MCAYKL ++ +WG+Q+K + H
Sbjct: 186 KDCPYMCAYKLVTVKFKWWGLQNKVENFIH 215
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 39/227 (17%)
Query: 290 ENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVK-NFKLEIT 348
E + HKIYH+ S +P +++ L P+ AL + E+AWNAYP+ +TV + +++K +F ++I
Sbjct: 54 EKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIE 113
Query: 349 TKYLPESVLAWAWQDEWNGLNIEDIRKIERDT---AEALKLKMSDANVDMTAKKSDTTTF 405
T + P+ E++ K+E + EA+ + ++D + + +K
Sbjct: 114 TWHKPDLGTQ------------ENVHKLEPEAWKHVEAIYIDIADRS-QVLSKDYKAEED 160
Query: 406 RGAFESVIRQHYPSMMGRGHDQPHNGQAL--------MCAYKLCRVQFHYWGMQTKLEKF 457
F+S+ GRG P+ Q L MCAYKL V+F +WG+Q K+E F
Sbjct: 161 PAKFKSI-------KTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENF 213
Query: 458 VHEFGKVAGKKRGLASV--LAWAWQDEWNGLNIEDIRKIERDTAEAL 502
+H+ +KR + + W D+W L ++DIR++E +T L
Sbjct: 214 IHK-----QEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQL 255
>pdb|1UW5|A Chain A, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|B Chain B, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|C Chain C, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|D Chain D, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
Length = 270
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 126/264 (47%), Gaps = 63/264 (23%)
Query: 1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
+L+KEYR+ LP++VDEY++ QLY +A+ S+ E+ G G GVE+L NEPY+ D G KGQ
Sbjct: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPYEKD----GEKGQ 56
Query: 61 KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRI----PLPLTV--DEYKIAQLYM 114
T KIYH+ S +P +++ L P+ AL + + P TV +EY +
Sbjct: 57 YTH-------KIYHLQSKVPTFVRXLAPEGALNIHEKAWNAYPYCRTVITNEYXKEDFLI 109
Query: 115 IAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSD 174
I + H+ LG + KL P +
Sbjct: 110 ----------KIETWHK-----------PDLGTQENVHKLEPE-------------AWKH 135
Query: 175 LRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSH 234
+ + +++ D + Q+ DY EEDP+ + S TGRGPL NW E V+
Sbjct: 136 VEAVYIDIAD--RSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE---------LVNQ 184
Query: 235 DNKSMMCAYKLCKIQLNYWGIQSK 258
+ CAYKL ++ +WG+Q+K
Sbjct: 185 KDCPYXCAYKLVTVKFKWWGLQNK 208
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 41/222 (18%)
Query: 296 HKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVK-NFKLEITTKYLPE 354
HKIYH+ S +P +++ L P+ AL + E+AWNAYP+ +TV + ++ K +F ++I T + P+
Sbjct: 59 HKIYHLQSKVPTFVRXLAPEGALNIHEKAWNAYPYCRTVITNEYXKEDFLIKIETWHKPD 118
Query: 355 SVLAWAWQDEWNGLNIEDIRKIERDT---AEALKLKMSDANVDMTAKKSDTTTFRGAFES 411
E++ K+E + EA+ + ++D + + +K F+S
Sbjct: 119 LGTQ------------ENVHKLEPEAWKHVEAVYIDIADRS-QVLSKDYKAEEDPAKFKS 165
Query: 412 VIRQHYPSMMGRGHDQPHNGQALM--------CAYKLCRVQFHYWGMQTKLEKFVHEFGK 463
+ GRG P+ Q L+ CAYKL V+F +WG+Q K+E F+H+
Sbjct: 166 I-------KTGRGPLGPNWKQELVNQKDCPYXCAYKLVTVKFKWWGLQNKVENFIHK--- 215
Query: 464 VAGKKRGLASVL---AWAWQDEWNGLNIEDIRKIERDTAEAL 502
++R L + + W D+W L +DIR+ E +T L
Sbjct: 216 ---QERRLFTNFHRQLFCWLDKWVDLTXDDIRRXEEETKRQL 254
>pdb|2A1L|A Chain A, Rat Pitp-Beta Complexed To Phosphatidylcholine
Length = 270
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 121/264 (45%), Gaps = 63/264 (23%)
Query: 1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
+LIKE+R+ LP +V EY++ QLY +A+ S+ E+ G G G+E+L NEPY+ND G KGQ
Sbjct: 1 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNET-GGGEGIEVLKNEPYEND----GEKGQ 55
Query: 61 KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEV------KYRIPLPLTVDEYKIAQLYM 114
T KIYH+ S +P +++ + P+ +L Y + +EY ++
Sbjct: 56 YTH-------KIYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFI 108
Query: 115 IAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSD 174
I + H+ +L + GL P + K
Sbjct: 109 ----------KIETWHKP----DLGTLENVHGLDPNTWKT-------------------- 134
Query: 175 LRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSH 234
IV + + Q+ DY +EDP+++ S T RGPL NW E N
Sbjct: 135 --VEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELANT--------- 183
Query: 235 DNKSMMCAYKLCKIQLNYWGIQSK 258
+ MCAYKL I+ +WG+QSK
Sbjct: 184 PDCPKMCAYKLVTIKFKWWGLQSK 207
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 32/235 (13%)
Query: 290 ENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVK-NFKLEIT 348
E + HKIYH+ S +P +++ + P+ +L E+AWNAYP+ +T+ + +++K +F ++I
Sbjct: 52 EKGQYTHKIYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIE 111
Query: 349 TKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSD-ANVDMTAKKSDTTTFRG 407
T + P D N+ + T E + + ++D + V+ K+D
Sbjct: 112 TWHKP---------DLGTLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDP--A 160
Query: 408 AFESVIRQHYP------SMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEF 461
F+SV + P + D P MCAYKL ++F +WG+Q+K+E F+ +
Sbjct: 161 LFQSVKTKRGPLGPNWKKELANTPDCPK-----MCAYKLVTIKFKWWGLQSKVENFIQK- 214
Query: 462 GKVAGKKRGLASV--LAWAWQDEWNGLNIEDIRKIERDTAEALK-LKMSGGANGT 513
+KR ++ + W D+W L +EDIR++E +T + L+ ++ G GT
Sbjct: 215 ----QEKRIFTNLHRQLFCWIDKWIDLTMEDIRRMEDETQKELETMRKKGSVRGT 265
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 92/245 (37%), Gaps = 87/245 (35%)
Query: 95 KYRIPLPLTVDEYKIAQLYMIAVSDLSQGG---------------DISSQHRIKQTFNLR 139
++R+ LP +V EY++ QLY +A + ++ G D + ++L+
Sbjct: 5 EFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYENDGEKGQYTHKIYHLK 64
Query: 140 S---SLTRL-----GLKPYSKKLNPRLRCGDCRGKEF---------------------QL 170
S + R+ L + K N C E+ +
Sbjct: 65 SKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLGTLENV 124
Query: 171 SGSDLRS-RIVEV--IDVV-KDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAV 226
G D + + VE+ ID+ + Q+ DY +EDP+++ S T RGPL NW E N
Sbjct: 125 HGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELANT- 183
Query: 227 KEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQ 286
D P MCAYKL ++F +WG+Q
Sbjct: 184 ---------------------------------PDCPK-----MCAYKLVTIKFKWWGLQ 205
Query: 287 TKLEN 291
+K+EN
Sbjct: 206 SKVEN 210
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 359 WAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTA 397
+ W D+W L +EDIR++E +T + L+ +V T+
Sbjct: 228 FCWIDKWIDLTMEDIRRMEDETQKELETMRKKGSVRGTS 266
>pdb|1EVS|A Chain A, Crystal Structure Of Human Oncostatin M
Length = 187
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 354 ESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVI 413
E L A E +GLNIED+ K++ L L+ + + SDT
Sbjct: 89 EQRLPKAQDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAE--------- 139
Query: 414 RQHYPSMMGRGHDQPHNGQALMCAYKL----CRVQFHYWGMQTKLEKFVHEFGKVAGK 467
P+ GRG QP A++ CR Y +F+H G+V K
Sbjct: 140 ----PTKAGRGASQPPTPTPASDAFQRKLEGCRFLHGY-------HRFMHSVGRVFSK 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,218,576
Number of Sequences: 62578
Number of extensions: 730777
Number of successful extensions: 1769
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 25
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)