Query psy4655
Match_columns 595
No_of_seqs 251 out of 558
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:22:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 100.0 1.9E-98 7E-103 754.7 17.0 262 1-515 1-268 (270)
2 1kcm_A PITP alpha, phosphatidy 100.0 1.1E-38 3.7E-43 321.4 0.7 108 292-403 55-168 (270)
3 1b0n_B Protein (SINI protein); 16.7 58 0.002 25.8 1.7 11 484-494 25-35 (57)
4 3hym_A Anaphase-promoting comp 10.5 1.1E+02 0.0036 21.6 1.3 17 484-500 9-25 (29)
5 2jz8_A Uncharacterized protein 10.4 81 0.0028 27.2 0.9 25 313-337 36-60 (87)
6 2h88_D Succinate dehydrogenase 7.3 83 0.0028 27.3 -0.3 15 447-461 48-62 (103)
7 2l2l_B Methyl-CPG-binding doma 5.8 4.5E+02 0.016 19.2 3.0 17 485-501 6-22 (36)
8 3bpj_A Eukaryotic translation 5.0 5.5E+02 0.019 21.1 3.5 27 484-510 49-75 (80)
9 2ki0_A DS119; beta-alpha-beta, 5.0 5.7E+02 0.02 18.2 3.0 20 482-501 8-27 (36)
10 2k48_A Nucleoprotein; viral pr 5.0 2.2E+02 0.0076 25.3 1.1 16 485-500 31-46 (107)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=100.00 E-value=1.9e-98 Score=754.66 Aligned_cols=262 Identities=36% Similarity=0.665 Sum_probs=229.7
Q ss_pred CcceEEeeecccChhHHHhHHHHHHHhhcccccCCCCceEEEEEcccCCCCCCCCCCcceEeeeecCCcceEEEccCChh
Q psy4655 1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLP 80 (595)
Q Consensus 1 mlikEyRI~lPltveEY~i~QLYmv~k~S~ees~g~GeGVEvl~Nepy~~~~~~~~~~GqyT~~~~~~~~Kiyhl~sklP 80 (595)
|||||||||||||||||||||||||||+|+++| |+|+|||||+||||++ ++|++||||| |||||+||||
T Consensus 1 ~likEyRi~lPltveEY~igQlY~vak~S~~et-g~GeGVEvl~Nepy~~---~~g~~GqYT~-------Kiyhl~sklP 69 (270)
T 1kcm_A 1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPYEK---DDGEKGQYTH-------KIYHLQSKVP 69 (270)
T ss_dssp CEEEEEEEEESSCHHHHHHHHHHHHHHHHTTCS-STTTTEEEEEEEEEEC---TTSCEEEEEE-------EEEECGGGSC
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHHhhHhhc-CCCceEEEEecccccc---CCCCccceEE-------EEEEccccCh
Confidence 899999999999999999999999999999998 8999999999999997 4678999999 9999999999
Q ss_pred HHHHhhcCCCceEEEEec--CCCceeeeEeecceehhhhcccCCCCCCccccccccccccccccceeeeecccccCCCcc
Q psy4655 81 GWIKSLLPKSALEVKYRI--PLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRL 158 (595)
Q Consensus 81 ~wi~~l~P~~al~v~E~a--ayPy~~T~y~~~~~ym~~~~~~~~~~~~~~~~~~k~~F~~~~~~~~l~iet~~~~~~~~~ 158 (595)
+||++|+|++||+|+|+| |||||+|+|+||| | .+ +| + |.|||+|+
T Consensus 70 ~wi~~~~P~~al~v~EkaWNayPy~~T~yt~~~--~--~~----------------kF----~---i~IET~h~------ 116 (270)
T 1kcm_A 70 TFVRMLAPEGALNIHEKAWNAYPYCRTVITNEY--M--KE----------------DF----L---IKIETWHK------ 116 (270)
T ss_dssp HHHHTTSCTTTTEEEEEEEEETTEEEEEEEETT--T--GG----------------GE----E---EEEEEEEE------
T ss_pred HHHHHhCCccceEEEeehhccCcceeeEecCCC--c--Cc----------------ce----E---EEEEEEEc------
Confidence 999999999999999999 9999999999997 2 23 49 7 99999999
Q ss_pred CCCCC--CCCccCCCcccccceEEEEeeccCC-CCCCCCCCCCCCCCcceecccCCCCCCCchhhhhhccccCCCCcccc
Q psy4655 159 RCGDC--RGKEFQLSGSDLRSRIVEVIDVVKD-QLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHD 235 (595)
Q Consensus 159 ~~~d~--~~Nv~~L~~~~l~~R~V~~iDI~~d-~~~~~dY~~eeDp~~~~s~~t~rGPl~~~W~~~~~~~~~~~~~~~~~ 235 (595)
+|+ ++||||||+++|++|+|++||||+| +++++||+++|||++|+|++||||||.+||++++.
T Consensus 117 --~d~g~~eNv~~L~~~~l~~reV~~IDIa~~~~~~~~dY~~eeDp~~f~S~ktgRGPL~~~W~~~~~------------ 182 (270)
T 1kcm_A 117 --PDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQELV------------ 182 (270)
T ss_dssp --SSSSCCSSTTCCCHHHHTTCEEEEECTTCGGGSCGGGCCGGGCTTTCCCTTTCCCCCCTTHHHHHT------------
T ss_pred --CCCCCcccccCCChHHhcCceEEEEecccCcccccccCCcccCcchheecccCCCCCCcchhhhcc------------
Confidence 454 9999999999999999999999986 59999999999999999999999999999976410
Q ss_pred cchhhhhhhhhhhhcccccccccCCCCCCCCcceEEEEeEeEEEeeeecceeeccCCCccceEEEecCCchhhhHhhcCc
Q psy4655 236 NKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPK 315 (595)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~YKlv~v~f~~wG~q~~vE~gqYThKiyhL~SKLP~WirallPk 315 (595)
T Consensus 183 -------------------------------------------------------------------------------- 182 (270)
T 1kcm_A 183 -------------------------------------------------------------------------------- 182 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhccCCcceEEEeccccccceEEEEeeecCCCcccccccccccCCCHHHHHHHHHHHHHHhhhhccCCCCCC
Q psy4655 316 SALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDM 395 (595)
Q Consensus 316 ~aL~V~EkAWNAYPYtkTvYTcpf~~KF~I~IET~~~~d~g~~~~~~DNv~nLS~edLrkrEve~iDiv~~k~~~~~~Dp 395 (595)
|
T Consensus 183 ------------------------------------------------~------------------------------- 183 (270)
T 1kcm_A 183 ------------------------------------------------N------------------------------- 183 (270)
T ss_dssp ------------------------------------------------T-------------------------------
T ss_pred ------------------------------------------------c-------------------------------
Confidence 0
Q ss_pred CccccCCccccCcchhhhhcccCCccCCCCCCCCCCCceEEEEEEeEEEeeechhhHHHHHHHHHhhccccchhhhceee
Q psy4655 396 TAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVL 475 (595)
Q Consensus 396 ~~~~SDkt~~rg~l~~~~~~~~~~~tgRGplw~~~~~PiMcaYKLV~VeFkyWGlQtkVE~fIhk~~r~~~~~rll~HRQ 475 (595)
.+..|+|||||||+|+|+|||||+|||+|||+++| ...+.+|||
T Consensus 184 ---------------------------------~~~~PiMc~YKLv~v~f~~wGlq~rvE~fI~~~~r---~i~~~~HRq 227 (270)
T 1kcm_A 184 ---------------------------------QKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEK---RLFTNFHRQ 227 (270)
T ss_dssp ---------------------------------STTCCCEEEEEEEEEEECCSSCHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred ---------------------------------cCCCceEEEEEEEEEEEeecCchHHHHHHHHHHHH---HHHHHHHHH
Confidence 00237999999999999999999999999999975 222338999
Q ss_pred eeeeecccCCCCHHHHHHHHHHHHHHHHH-HhcCCCCCCCC
Q psy4655 476 AWAWQDEWNGLNIEDIRKIERDTAEALKL-KMSGGANGTDI 515 (595)
Q Consensus 476 afcWiDEWygLTMeDIRe~E~Etqe~L~~-k~~~~~~g~~~ 515 (595)
|||||||||||||||||+||+|||++|++ +..++.+|+.+
T Consensus 228 ~fcW~DeW~glTmedIR~~E~etq~~L~~~~~~~~~~~~~~ 268 (270)
T 1kcm_A 228 LFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGMTA 268 (270)
T ss_dssp HHHTHHHHTTCCHHHHHHHHHHHHHCCCC------------
T ss_pred HhccHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccCCccC
Confidence 99999999999999999999999999986 77788888764
No 2
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=100.00 E-value=1.1e-38 Score=321.35 Aligned_cols=108 Identities=32% Similarity=0.497 Sum_probs=99.9
Q ss_pred CCccceEEEecCCchhhhHhhcCccccchhhhhhccCCcceEEEeccccc-cceEEEEeeecCCCcccccccccccCCCH
Q psy4655 292 PEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVK-NFKLEITTKYLPESVLAWAWQDEWNGLNI 370 (595)
Q Consensus 292 gqYThKiyhL~SKLP~WirallPk~aL~V~EkAWNAYPYtkTvYTcpf~~-KF~I~IET~~~~d~g~~~~~~DNv~nLS~ 370 (595)
||||||+|||+||||+|||+|+|+++|+|+|+||||||||+|+|||+||+ +|+|.|||+|.+|+| .+||+|||++
T Consensus 55 GqYT~Kiyhl~sklP~wi~~~~P~~al~v~EkaWNayPy~~T~yt~~~~~~kF~i~IET~h~~d~g----~~eNv~~L~~ 130 (270)
T 1kcm_A 55 GQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG----TQENVHKLEP 130 (270)
T ss_dssp EEEEEEEEECGGGSCHHHHTTSCTTTTEEEEEEEEETTEEEEEEEETTTGGGEEEEEEEEEESSSS----CCSSTTCCCH
T ss_pred cceEEEEEEccccChHHHHHhCCccceEEEeehhccCcceeeEecCCCcCcceEEEEEEEEcCCCC----CcccccCCCh
Confidence 69999999999999999999999999999999999999999999999995 799999999999997 5899999999
Q ss_pred HHHHHHHHHHHHHhhh-----hccCCCCCCCccccCCc
Q psy4655 371 EDIRKIERDTAEALKL-----KMSDANVDMTAKKSDTT 403 (595)
Q Consensus 371 edLrkrEve~iDiv~~-----k~~~~~~Dp~~~~SDkt 403 (595)
++|++||+++|||+++ +.|.+++||+.|+|+++
T Consensus 131 ~~l~~reV~~IDIa~~~~~~~~dY~~eeDp~~f~S~kt 168 (270)
T 1kcm_A 131 EAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSVKT 168 (270)
T ss_dssp HHHTTCEEEEECTTCGGGSCGGGCCGGGCTTTCCCTTT
T ss_pred HHhcCceEEEEecccCcccccccCCcccCcchheeccc
Confidence 9999999999999863 44678889988887654
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=16.68 E-value=58 Score=25.84 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=10.2
Q ss_pred CCCCHHHHHHH
Q psy4655 484 NGLNIEDIRKI 494 (595)
Q Consensus 484 ygLTMeDIRe~ 494 (595)
.|||++|||++
T Consensus 25 lGlsleEIref 35 (57)
T 1b0n_B 25 ANISPEEIRKY 35 (57)
T ss_dssp TTCCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 79999999987
No 4
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=10.49 E-value=1.1e+02 Score=21.57 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy4655 484 NGLNIEDIRKIERDTAE 500 (595)
Q Consensus 484 ygLTMeDIRe~E~Etqe 500 (595)
..||+|||-++|..-|+
T Consensus 9 I~l~~eDi~e~E~~rke 25 (29)
T 3hym_A 9 LELKLDDIEEFENIRKD 25 (29)
T ss_dssp CCCCSGGGHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHH
Confidence 57899999999986543
No 5
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=10.35 E-value=81 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.7
Q ss_pred cCccccchhhhhhccCCcceEEEec
Q psy4655 313 LPKSALEVKEEAWNAYPFTKTVYSC 337 (595)
Q Consensus 313 lPk~aL~V~EkAWNAYPYtkTvYTc 337 (595)
=|+.+|.|....+..=|||-|+|.-
T Consensus 36 HPrVyL~i~~~g~~~CpYCg~~y~~ 60 (87)
T 2jz8_A 36 HPHIFIDMGSTDEKICPYCSTLYRY 60 (87)
T ss_dssp SSSCEEECTTCCEECCTTTCCEEEC
T ss_pred CCEEEEEcCCCCeEECCCCCCEeEc
Confidence 4999999999999999999999964
No 6
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=7.34 E-value=83 Score=27.35 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=13.2
Q ss_pred echhhHHHHHHHHHh
Q psy4655 447 YWGMQTKLEKFVHEF 461 (595)
Q Consensus 447 yWGlQtkVE~fIhk~ 461 (595)
.||||.-||+|||+-
T Consensus 48 ~~G~q~vI~DYv~~~ 62 (103)
T 2h88_D 48 HWGLGQVITDYVHGD 62 (103)
T ss_dssp HHHHHHHHHHHCCSH
T ss_pred HHhcCeeeecccccc
Confidence 599999999999963
No 7
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=5.81 E-value=4.5e+02 Score=19.22 Aligned_cols=17 Identities=35% Similarity=0.347 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy4655 485 GLNIEDIRKIERDTAEA 501 (595)
Q Consensus 485 gLTMeDIRe~E~Etqe~ 501 (595)
-.|-+|||+=|+.++.+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 46899999999988765
No 8
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=4.98 E-value=5.5e+02 Score=21.14 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCC
Q psy4655 484 NGLNIEDIRKIERDTAEALKLKMSGGA 510 (595)
Q Consensus 484 ygLTMeDIRe~E~Etqe~L~~k~~~~~ 510 (595)
-+|+.+|||++..-+.--.|+|++.+.
T Consensus 49 ~~L~~~dikkv~s~l~~l~nEK~K~EK 75 (80)
T 3bpj_A 49 ISLEIDDLKKITNSLTVLCSEKQKQEK 75 (80)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999988888888876543
No 9
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=4.98 E-value=5.7e+02 Score=18.20 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=16.2
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy4655 482 EWNGLNIEDIRKIERDTAEA 501 (595)
Q Consensus 482 EWygLTMeDIRe~E~Etqe~ 501 (595)
-|.|=|-|++.++-+|.+.+
T Consensus 8 iwvggtpeelkklkeeakka 27 (36)
T 2ki0_A 8 IWVGGTPEELKKLKEEAKKA 27 (36)
T ss_dssp CCBCCCHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHhc
Confidence 38999999999998776553
No 10
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=4.97 E-value=2.2e+02 Score=25.32 Aligned_cols=16 Identities=0% Similarity=0.339 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHH
Q psy4655 485 GLNIEDIRKIERDTAE 500 (595)
Q Consensus 485 gLTMeDIRe~E~Etqe 500 (595)
-|||+||.++|+|...
T Consensus 31 ~~tM~~ieeLQ~Ei~~ 46 (107)
T 2k48_A 31 PFTMSTLQELQENITA 46 (107)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 5799999999987543
Done!