RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4655
(595 letters)
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 269
Score = 197 bits (502), Expect = 2e-59
Identities = 83/261 (31%), Positives = 121/261 (46%), Gaps = 56/261 (21%)
Query: 1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
+L+KEYR+ LP++VDEY++ QLY +A+ S+ E+ G G GVE+L NEPY+ D+ G KGQ
Sbjct: 1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGG-GEGVEVLVNEPYEKDD---GEKGQ 56
Query: 61 KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEV--KYRIPLPLTVDEYKIAQLYMIAVS 118
T KIYH+ S +P +++ L P+ AL + K P YM
Sbjct: 57 YT-------HKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNE--YM--KE 105
Query: 119 DLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSR 178
D I + H+ +L + L+P +
Sbjct: 106 DFLI--KIETWHK----PDLGTQENVHKLEP-----------------------EAWKHV 136
Query: 179 IVEVIDVV-KDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNK 237
ID+ + Q+ DY EEDP+ + S TGRGPL NW E N +
Sbjct: 137 EAIYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQELVN---------QKDC 187
Query: 238 SMMCAYKLCKIQLNYWGIQSK 258
MCAYKL ++ +WG+Q+K
Sbjct: 188 PYMCAYKLVTVKFKWWGLQNK 208
Score = 160 bits (406), Expect = 1e-45
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 28/228 (12%)
Query: 296 HKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFV-KNFKLEITTKYLPE 354
HKIYH+ S +P +++ L P+ AL + E+AWNAYP+ +TV + +++ ++F ++I T + P+
Sbjct: 59 HKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPD 118
Query: 355 SVLAWAWQDEWNGLNIEDIRKIERDTAE-ALKLKMSDANV----DMTAKKSDTTTFRGAF 409
Q+ + L E + +E + A + ++ + D KS T RG
Sbjct: 119 LGT----QENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSIKTG-RGPL 173
Query: 410 ESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKR 469
+Q + D P+ MCAYKL V+F +WG+Q K+E F+H +KR
Sbjct: 174 GPNWKQELVN----QKDCPY-----MCAYKLVTVKFKWWGLQNKVENFIH-----KQEKR 219
Query: 470 GLASV--LAWAWQDEWNGLNIEDIRKIERDTAEAL-KLKMSGGANGTD 514
+ + W D+W L ++DIR++E +T L +++ G
Sbjct: 220 LFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGMT 267
Score = 115 bits (290), Expect = 2e-29
Identities = 49/227 (21%), Positives = 71/227 (31%), Gaps = 90/227 (39%)
Query: 168 FQLSGSDLRSRIVEVIDVV-KDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAV 226
+L + ID+ + Q+ DY EEDP+ + S TGRGPL NW E N
Sbjct: 126 HKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQELVNQ- 184
Query: 227 KEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQ 286
D P+ MCAYKL V+F +WG+Q
Sbjct: 185 ---------------------------------KDCPY-----MCAYKLVTVKFKWWGLQ 206
Query: 287 TKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLE 346
K+EN +I + + +
Sbjct: 207 NKVEN----------------FIHKQEKRLFTNFHRQLF--------------------- 229
Query: 347 ITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANV 393
W D+W L ++DIR++E +T L V
Sbjct: 230 -------------CWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPV 263
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA
{Aquifex aeolicus [TaxId: 63363]}
Length = 110
Score = 28.5 bits (63), Expect = 0.96
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 16/110 (14%)
Query: 292 PEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKY 351
PE + ++ V SHLP + L + + + + + + + DF + K +
Sbjct: 2 PELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGF-KDFTRIAKSD----- 55
Query: 352 LPESVLAWAWQDEWNGL--------NIEDIRK-IERDTAEALKLKMSDAN 392
P +++ N + ++ +++ I R+ E L + +
Sbjct: 56 -PIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVK 104
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase
{Thermotoga maritima [TaxId: 2336]}
Length = 296
Score = 28.1 bits (61), Expect = 2.9
Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 9/228 (3%)
Query: 288 KLENPEENHKIYHV-GSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLE 346
KL NP +K H+ G++ G + +++ + L + +Y + ++ +
Sbjct: 35 KLGNPHLEYKTIHIGGTNGKGSVANMV-SNILVSQGYRVGSYYSPHLSTFRERIRLNEEY 93
Query: 347 ITTKYLPESVLAWAWQ-DEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTF 405
I+ + + + +E + I E TA A L ++ NVD+ +
Sbjct: 94 ISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAF-LYFAEKNVDIAVLEVGLGGR 152
Query: 406 RGAFESVIRQHYPSMMGRGHDQPHNGQALMC-----AYKLCRVQFHYWGMQTKLEKFVHE 460
A V + + G + + + G + + V E
Sbjct: 153 LDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVME 212
Query: 461 FGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSG 508
R ++ + + L+ +T E L L M+G
Sbjct: 213 DVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNG 260
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 27.3 bits (60), Expect = 5.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 510 ANGTDIPSDGLQSASSHSTAPSASTITSAP 539
A G+ L+ +SSH++ + ST+T+AP
Sbjct: 353 AYGS---GYCLKDSSSHTSYTTTSTVTAAP 379
>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]}
Length = 163
Score = 26.6 bits (58), Expect = 6.4
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 180 VEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSM 239
EV+DV K + I V+ T G G L +W E ++ +
Sbjct: 28 AEVVDVAK---ASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGT--LEASDFANKTIGL 82
Query: 240 MCAYKLCKIQLNYWGIQSKGHDQPHNGQ 267
+ + +++ G+
Sbjct: 83 VGLGDQDTYSETFAEGIFHIYEKAKAGK 110
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 178
Score = 26.4 bits (57), Expect = 7.2
Identities = 7/115 (6%), Positives = 22/115 (19%)
Query: 404 TFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGK 463
++ + + + G + + +Y H G + E
Sbjct: 54 SYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLH 113
Query: 464 VAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSGGANGTDIPSD 518
+ + + + +P+D
Sbjct: 114 HTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPAD 168
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli
[TaxId: 562]}
Length = 107
Score = 25.2 bits (55), Expect = 9.7
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 171 SGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRG 212
+ + R I E + KD + G Y RE+ +Y + T
Sbjct: 36 TLTKFRDAIEEHLSD-KDTVEKGTYRREKGSKVYFNPNTMNV 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.397
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,246,034
Number of extensions: 107423
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 16
Length of query: 595
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 505
Effective length of database: 1,171,896
Effective search space: 591807480
Effective search space used: 591807480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.0 bits)