BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4658
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment.
 pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment
          Length = 1184

 Score = 37.0 bits (84), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 8/83 (9%)

Query: 104  DKATKDHQIRNLNDEIAHQDELINKLNKEKK----QAGEVTQKTAEELQAAEDKVNHLNK 159
            +K T D +I+ + D+I   ++  NKL KE+K    +  ++T   AEE    E+K  +L K
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE----EEKAKNLTK 1032

Query: 160  VKAKLEQTLDELEDSLEREKKLR 182
            +K K E  + ELE  L++E+K R
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSR 1055


>pdb|1EJ6|B Chain B, Reovirus Core
 pdb|1EJ6|C Chain C, Reovirus Core
 pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1275

 Score = 27.7 bits (60), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 15/80 (18%)

Query: 77  GLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
           G++S+Q      A + A+L  +   + D+ T D +     D       L+N+ ++ K +A
Sbjct: 58  GIASVQR-----ATESAELPMK---NNDEGTPDKKGNTRGD-------LVNEHSEAKDEA 102

Query: 137 GEVTQKTAEELQAAEDKVNH 156
            E TQK A++   ++ +V +
Sbjct: 103 DEATQKQAKDTDKSKAQVTY 122


>pdb|1DVO|A Chain A, The X-Ray Crystal Structure Of Fino, A Repressor Of
           Bacterial Conjugation
          Length = 152

 Score = 26.6 bits (57), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 4/37 (10%)

Query: 137 GEVTQKTA--EELQAAE--DKVNHLNKVKAKLEQTLD 169
           G VT+  +  EE+ AAE  DK+   N++KA+L+  LD
Sbjct: 116 GYVTEHISQEEEVYAAERLDKIRRQNRIKAELQAVLD 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.304    0.121    0.299 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,482,513
Number of Sequences: 62578
Number of extensions: 104643
Number of successful extensions: 474
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 112
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 48 (23.1 bits)