Query psy4658
Match_columns 182
No_of_seqs 123 out of 299
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:28:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 99.9 6E-23 1.3E-27 206.1 22.7 174 6-182 820-1036(1930)
2 KOG0161|consensus 98.3 0.0001 2.2E-09 76.3 21.6 141 42-182 965-1120(1930)
3 PF00261 Tropomyosin: Tropomyo 97.9 0.0056 1.2E-07 51.0 19.7 156 25-180 6-218 (237)
4 PRK11637 AmiB activator; Provi 96.9 0.29 6.2E-06 44.1 22.9 77 25-101 45-121 (428)
5 KOG1003|consensus 96.7 0.25 5.3E-06 40.4 19.7 152 25-179 23-185 (205)
6 TIGR02169 SMC_prok_A chromosom 96.7 0.73 1.6E-05 45.6 22.7 55 118-172 442-496 (1164)
7 PF09726 Macoilin: Transmembra 96.5 0.86 1.9E-05 44.0 21.5 120 52-171 464-627 (697)
8 PF00261 Tropomyosin: Tropomyo 96.5 0.4 8.6E-06 39.9 20.0 62 107-171 173-234 (237)
9 PF01576 Myosin_tail_1: Myosin 96.5 0.0007 1.5E-08 66.1 0.0 80 103-182 173-259 (859)
10 COG1196 Smc Chromosome segrega 96.3 1.3 2.9E-05 44.8 22.2 63 113-175 838-900 (1163)
11 TIGR02168 SMC_prok_B chromosom 96.3 1.2 2.7E-05 43.8 22.6 47 27-73 677-723 (1179)
12 COG1579 Zn-ribbon protein, pos 96.1 0.7 1.5E-05 38.9 20.5 117 25-154 29-147 (239)
13 COG4942 Membrane-bound metallo 96.0 1.1 2.4E-05 40.6 23.4 150 27-176 38-248 (420)
14 KOG0250|consensus 95.9 2 4.3E-05 43.1 20.4 144 26-175 280-424 (1074)
15 PRK02224 chromosome segregatio 95.8 2 4.3E-05 41.9 20.4 46 126-171 351-396 (880)
16 PF12718 Tropomyosin_1: Tropom 95.8 0.67 1.5E-05 35.9 18.8 131 29-176 2-132 (143)
17 PRK02224 chromosome segregatio 95.4 2.9 6.2E-05 40.8 21.9 73 28-101 483-555 (880)
18 KOG0250|consensus 95.4 3.3 7.2E-05 41.5 20.6 89 7-101 274-362 (1074)
19 TIGR00606 rad50 rad50. This fa 95.0 4.3 9.4E-05 41.8 20.0 15 160-174 882-896 (1311)
20 PF01576 Myosin_tail_1: Myosin 94.9 0.0071 1.5E-07 59.2 0.0 143 34-176 328-478 (859)
21 PF07888 CALCOCO1: Calcium bin 94.6 4.1 8.8E-05 38.3 22.7 57 36-92 180-236 (546)
22 KOG0612|consensus 94.3 6.9 0.00015 39.9 20.3 107 66-179 571-687 (1317)
23 PF07888 CALCOCO1: Calcium bin 94.0 5.3 0.00012 37.5 18.5 55 42-96 144-198 (546)
24 PF13851 GAS: Growth-arrest sp 93.4 3.7 8.1E-05 33.5 19.6 114 27-150 27-140 (201)
25 KOG0964|consensus 93.0 6.2 0.00013 39.5 15.7 48 105-152 274-321 (1200)
26 PF09730 BicD: Microtubule-ass 92.9 9.7 0.00021 37.0 19.6 135 25-159 32-177 (717)
27 KOG0933|consensus 92.8 12 0.00026 37.7 18.7 74 27-100 787-860 (1174)
28 PF15070 GOLGA2L5: Putative go 92.7 9.6 0.00021 36.4 17.8 95 75-176 121-219 (617)
29 PF08614 ATG16: Autophagy prot 92.4 2.2 4.7E-05 34.4 10.3 119 25-149 65-183 (194)
30 KOG0977|consensus 92.2 10 0.00023 35.6 17.0 99 33-136 41-139 (546)
31 PF14073 Cep57_CLD: Centrosome 92.1 5.4 0.00012 32.2 17.0 131 36-180 6-155 (178)
32 PF09726 Macoilin: Transmembra 92.0 12 0.00027 36.2 21.1 136 31-166 471-633 (697)
33 PRK04778 septation ring format 92.0 11 0.00024 35.4 19.7 68 12-79 267-334 (569)
34 PF09755 DUF2046: Uncharacteri 91.8 8.2 0.00018 33.7 17.3 100 47-146 105-207 (310)
35 PF05667 DUF812: Protein of un 91.7 12 0.00027 35.5 18.8 135 24-158 325-474 (594)
36 KOG0964|consensus 91.3 18 0.00039 36.5 20.3 36 143-178 458-493 (1200)
37 PF00038 Filament: Intermediat 91.2 8.6 0.00019 32.7 20.4 44 31-74 100-143 (312)
38 KOG0977|consensus 91.2 13 0.00029 34.9 15.6 43 138-180 296-338 (546)
39 PF09304 Cortex-I_coil: Cortex 91.1 3.5 7.7E-05 30.5 9.1 69 105-180 11-79 (107)
40 KOG0971|consensus 90.8 19 0.00042 36.0 19.4 47 51-101 420-466 (1243)
41 PF00038 Filament: Intermediat 90.2 11 0.00023 32.2 14.4 130 34-176 4-134 (312)
42 PF10146 zf-C4H2: Zinc finger- 90.0 10 0.00022 31.7 13.9 93 26-132 10-103 (230)
43 PF14662 CCDC155: Coiled-coil 89.9 9.6 0.00021 31.1 15.9 74 26-99 66-139 (193)
44 COG1579 Zn-ribbon protein, pos 89.8 11 0.00024 31.8 19.4 120 25-148 15-134 (239)
45 PRK04863 mukB cell division pr 89.7 30 0.00064 36.5 20.5 40 34-73 293-332 (1486)
46 PF00769 ERM: Ezrin/radixin/mo 89.2 12 0.00026 31.4 17.2 112 24-149 9-121 (246)
47 KOG0612|consensus 88.2 34 0.00073 35.3 19.7 56 121-176 585-640 (1317)
48 PF09755 DUF2046: Uncharacteri 88.2 17 0.00037 31.8 20.0 116 55-176 84-202 (310)
49 KOG0978|consensus 88.1 27 0.00058 33.9 21.3 71 87-157 500-571 (698)
50 KOG1029|consensus 87.9 30 0.00064 34.2 16.2 118 45-163 397-539 (1118)
51 PRK09343 prefoldin subunit bet 87.9 9.5 0.00021 28.5 11.2 35 67-101 5-39 (121)
52 PF15070 GOLGA2L5: Putative go 87.6 27 0.00059 33.4 20.7 104 51-154 170-277 (617)
53 KOG0999|consensus 87.5 27 0.00057 33.2 16.6 129 31-159 111-250 (772)
54 PF10146 zf-C4H2: Zinc finger- 86.8 17 0.00037 30.4 14.8 40 28-67 5-44 (230)
55 KOG0996|consensus 86.8 41 0.00088 34.6 20.4 20 25-44 339-358 (1293)
56 PF12718 Tropomyosin_1: Tropom 86.7 13 0.00028 28.7 18.9 75 25-99 12-89 (143)
57 PF12128 DUF3584: Protein of u 86.5 42 0.00091 34.5 21.2 99 31-129 604-704 (1201)
58 PRK11637 AmiB activator; Provi 85.7 26 0.00057 31.4 21.2 78 24-101 51-128 (428)
59 PF15066 CAGE1: Cancer-associa 85.3 31 0.00068 32.0 19.2 152 30-181 313-489 (527)
60 PF14662 CCDC155: Coiled-coil 85.2 19 0.00042 29.4 20.9 139 38-176 19-168 (193)
61 PRK09039 hypothetical protein; 84.1 29 0.00063 30.6 18.6 38 25-62 51-88 (343)
62 PRK09039 hypothetical protein; 83.4 31 0.00068 30.4 20.9 59 25-90 44-102 (343)
63 KOG4674|consensus 83.3 71 0.0015 34.4 19.6 170 2-175 6-201 (1822)
64 PF04111 APG6: Autophagy prote 83.2 30 0.00065 30.1 12.2 77 79-155 46-123 (314)
65 PRK04863 mukB cell division pr 83.0 67 0.0015 34.0 21.7 33 35-67 301-333 (1486)
66 PF12329 TMF_DNA_bd: TATA elem 82.5 13 0.00029 25.4 9.3 69 108-176 3-71 (74)
67 PHA02562 46 endonuclease subun 82.1 41 0.00089 30.8 19.8 20 25-44 179-198 (562)
68 PF12777 MT: Microtubule-bindi 81.4 5.8 0.00012 34.8 6.9 73 7-81 210-282 (344)
69 KOG4643|consensus 81.4 66 0.0014 32.7 18.1 148 32-179 276-463 (1195)
70 PF07106 TBPIP: Tat binding pr 81.1 5.1 0.00011 31.4 5.9 57 7-63 50-108 (169)
71 PRK04778 septation ring format 81.0 49 0.0011 31.0 19.7 75 25-101 254-328 (569)
72 PF08317 Spc7: Spc7 kinetochor 80.8 37 0.00081 29.5 17.6 51 49-99 150-200 (325)
73 PF15294 Leu_zip: Leucine zipp 80.6 37 0.0008 29.3 15.6 146 13-175 118-276 (278)
74 PF09728 Taxilin: Myosin-like 79.3 42 0.0009 29.2 19.9 134 26-159 21-163 (309)
75 PF04102 SlyX: SlyX; InterPro 78.9 15 0.00032 24.7 6.8 38 110-147 4-41 (69)
76 COG4026 Uncharacterized protei 78.0 41 0.0009 28.4 11.3 78 55-132 142-221 (290)
77 PF12325 TMF_TATA_bd: TATA ele 77.4 28 0.00061 26.2 9.3 63 109-175 22-84 (120)
78 KOG0243|consensus 77.2 89 0.0019 31.8 19.5 75 27-101 411-494 (1041)
79 TIGR02338 gimC_beta prefoldin, 76.2 27 0.00059 25.4 10.5 34 112-145 69-102 (110)
80 KOG0804|consensus 73.6 76 0.0017 29.3 12.9 48 28-75 355-402 (493)
81 PRK00736 hypothetical protein; 73.6 25 0.00054 23.7 6.8 33 109-141 4-36 (68)
82 COG1842 PspA Phage shock prote 73.2 53 0.0012 27.3 16.9 110 25-136 29-139 (225)
83 KOG3478|consensus 73.0 37 0.0008 25.4 10.6 29 105-133 71-99 (120)
84 KOG0971|consensus 72.1 1.2E+02 0.0025 30.8 18.3 124 25-148 401-549 (1243)
85 PF06705 SF-assemblin: SF-asse 71.6 58 0.0012 27.0 22.3 97 25-121 32-132 (247)
86 PRK04325 hypothetical protein; 71.0 31 0.00066 23.6 6.9 31 110-140 9-39 (74)
87 PRK00295 hypothetical protein; 70.9 29 0.00063 23.4 7.1 35 109-143 4-38 (68)
88 PF08614 ATG16: Autophagy prot 70.7 53 0.0012 26.3 10.6 71 107-177 113-183 (194)
89 KOG0804|consensus 70.2 92 0.002 28.8 15.1 64 112-175 377-444 (493)
90 PF05911 DUF869: Plant protein 69.4 1.2E+02 0.0026 29.9 16.7 72 30-101 585-656 (769)
91 COG1382 GimC Prefoldin, chaper 69.3 47 0.001 25.1 10.9 41 107-147 67-107 (119)
92 PF10174 Cast: RIM-binding pro 68.8 1.3E+02 0.0027 29.8 19.9 112 36-147 289-408 (775)
93 PF08317 Spc7: Spc7 kinetochor 68.7 79 0.0017 27.5 19.0 110 25-144 154-264 (325)
94 PF15619 Lebercilin: Ciliary p 68.5 63 0.0014 26.3 17.5 69 105-176 120-188 (194)
95 KOG0996|consensus 68.1 1.6E+02 0.0034 30.7 20.2 47 35-81 385-431 (1293)
96 PF04156 IncA: IncA protein; 67.7 58 0.0013 25.6 15.1 33 35-67 82-114 (191)
97 PF05911 DUF869: Plant protein 67.4 1.3E+02 0.0029 29.6 19.0 97 24-120 593-690 (769)
98 PRK02793 phi X174 lysis protei 66.7 38 0.00082 23.1 6.9 32 109-140 7-38 (72)
99 KOG4673|consensus 66.7 1.4E+02 0.0029 29.4 18.8 37 26-62 345-381 (961)
100 PF08647 BRE1: BRE1 E3 ubiquit 66.2 45 0.00098 23.8 9.7 75 56-130 4-79 (96)
101 PF09744 Jnk-SapK_ap_N: JNK_SA 66.0 64 0.0014 25.4 14.2 95 56-150 51-150 (158)
102 KOG0976|consensus 65.4 1.6E+02 0.0034 29.7 20.4 47 37-83 95-141 (1265)
103 PRK00846 hypothetical protein; 65.0 44 0.00096 23.3 7.0 39 108-146 11-49 (77)
104 PF05483 SCP-1: Synaptonemal c 64.8 1.4E+02 0.0031 29.1 19.2 90 84-173 553-650 (786)
105 PF08826 DMPK_coil: DMPK coile 64.2 40 0.00086 22.4 7.7 34 67-100 2-35 (61)
106 KOG0933|consensus 64.1 1.8E+02 0.0038 29.8 19.7 89 60-148 792-881 (1174)
107 PF13851 GAS: Growth-arrest sp 64.0 78 0.0017 25.7 17.3 78 23-100 44-131 (201)
108 PF08826 DMPK_coil: DMPK coile 62.7 43 0.00092 22.3 7.4 49 25-73 6-57 (61)
109 PRK04406 hypothetical protein; 62.4 48 0.001 22.8 7.2 37 108-144 9-45 (75)
110 PF15066 CAGE1: Cancer-associa 61.9 1.4E+02 0.003 27.9 16.6 105 41-145 362-481 (527)
111 KOG4674|consensus 61.2 2.5E+02 0.0054 30.6 20.4 96 79-174 146-260 (1822)
112 PF10481 CENP-F_N: Cenp-F N-te 60.3 1.2E+02 0.0025 26.4 16.1 74 105-178 90-174 (307)
113 KOG0978|consensus 60.0 1.8E+02 0.0038 28.5 19.7 73 104-176 504-576 (698)
114 PF07106 TBPIP: Tat binding pr 59.7 48 0.001 25.8 6.9 34 113-146 75-108 (169)
115 cd00632 Prefoldin_beta Prefold 57.5 69 0.0015 23.0 10.2 23 114-136 67-89 (105)
116 PF01519 DUF16: Protein of unk 57.1 76 0.0016 23.3 7.7 35 109-143 36-72 (102)
117 PF07795 DUF1635: Protein of u 56.7 51 0.0011 27.4 6.7 48 24-71 23-70 (214)
118 PF06428 Sec2p: GDP/GTP exchan 56.5 75 0.0016 23.1 8.4 60 42-101 2-62 (100)
119 PF05557 MAD: Mitotic checkpoi 56.4 21 0.00045 34.5 5.1 67 111-177 462-535 (722)
120 PF00769 ERM: Ezrin/radixin/mo 55.6 1.2E+02 0.0027 25.3 15.8 103 47-149 4-114 (246)
121 PF10174 Cast: RIM-binding pro 55.4 2.2E+02 0.0048 28.2 20.0 37 25-61 369-405 (775)
122 KOG0976|consensus 54.3 2.5E+02 0.0053 28.4 20.8 53 47-99 315-367 (1265)
123 PRK02119 hypothetical protein; 54.1 68 0.0015 21.9 7.0 25 111-135 10-34 (73)
124 PF06005 DUF904: Protein of un 53.9 68 0.0015 21.9 10.3 61 28-88 5-65 (72)
125 PF15372 DUF4600: Domain of un 53.6 51 0.0011 25.2 5.8 27 154-180 60-86 (129)
126 PRK10884 SH3 domain-containing 51.8 1.3E+02 0.0029 24.6 11.3 17 29-45 95-111 (206)
127 PF10473 CENP-F_leu_zip: Leuci 51.7 1.1E+02 0.0024 23.6 18.6 69 61-129 37-106 (140)
128 PF15372 DUF4600: Domain of un 51.1 1.1E+02 0.0024 23.4 9.2 92 54-145 14-107 (129)
129 KOG1029|consensus 49.3 2.9E+02 0.0063 27.7 18.0 35 82-116 478-520 (1118)
130 PF04849 HAP1_N: HAP1 N-termin 49.0 1.9E+02 0.004 25.4 16.2 98 55-158 206-303 (306)
131 PF09738 DUF2051: Double stran 47.8 1.9E+02 0.0041 25.2 12.2 90 29-128 79-172 (302)
132 PF07926 TPR_MLP1_2: TPR/MLP1/ 47.2 1.2E+02 0.0026 22.7 16.7 41 130-170 90-130 (132)
133 KOG2129|consensus 46.9 2.4E+02 0.0052 26.1 18.5 118 58-175 182-329 (552)
134 PF06705 SF-assemblin: SF-asse 45.9 1.7E+02 0.0037 24.2 19.0 60 27-86 5-65 (247)
135 TIGR03185 DNA_S_dndD DNA sulfu 45.8 2.7E+02 0.0059 26.5 22.3 47 126-172 393-441 (650)
136 KOG0018|consensus 45.5 3.6E+02 0.0079 27.8 17.7 145 12-177 722-888 (1141)
137 KOG0243|consensus 45.3 3.6E+02 0.0078 27.7 18.7 95 3-99 419-513 (1041)
138 smart00787 Spc7 Spc7 kinetocho 45.2 2.1E+02 0.0045 25.0 17.9 46 49-94 145-190 (312)
139 KOG0963|consensus 44.7 3E+02 0.0064 26.6 20.1 78 67-146 233-314 (629)
140 PF01920 Prefoldin_2: Prefoldi 44.6 1.1E+02 0.0023 21.4 9.8 43 105-147 57-99 (106)
141 COG4026 Uncharacterized protei 44.3 2E+02 0.0043 24.4 10.3 69 31-99 132-200 (290)
142 PF10498 IFT57: Intra-flagella 44.1 2.3E+02 0.0051 25.2 11.9 79 62-140 266-351 (359)
143 PF15619 Lebercilin: Ciliary p 43.9 1.7E+02 0.0038 23.7 20.8 44 30-73 64-107 (194)
144 KOG0239|consensus 43.9 3.1E+02 0.0068 26.6 17.4 63 113-175 251-316 (670)
145 KOG0946|consensus 43.0 3.6E+02 0.0079 27.1 14.7 145 32-176 790-949 (970)
146 PRK15422 septal ring assembly 42.6 1.2E+02 0.0025 21.3 8.8 36 114-149 8-43 (79)
147 PRK13729 conjugal transfer pil 41.4 1.4E+02 0.0031 27.8 7.7 48 25-72 74-121 (475)
148 PF15294 Leu_zip: Leucine zipp 40.8 2.4E+02 0.0052 24.4 11.8 42 60-101 130-171 (278)
149 PF14193 DUF4315: Domain of un 40.6 1.2E+02 0.0025 21.4 5.6 30 30-59 4-33 (83)
150 cd00632 Prefoldin_beta Prefold 39.7 1.4E+02 0.003 21.3 7.5 56 7-65 46-101 (105)
151 PF09304 Cortex-I_coil: Cortex 39.1 1.6E+02 0.0035 21.8 12.3 33 67-99 14-46 (107)
152 KOG4593|consensus 38.8 3.9E+02 0.0084 26.2 20.9 56 105-160 146-201 (716)
153 PF06160 EzrA: Septation ring 38.5 3.4E+02 0.0074 25.5 19.2 68 25-94 250-317 (560)
154 KOG0979|consensus 38.2 4.6E+02 0.01 26.9 17.2 93 6-99 616-715 (1072)
155 PF12128 DUF3584: Protein of u 37.8 4.8E+02 0.01 27.0 22.8 44 26-69 627-670 (1201)
156 PF05701 WEMBL: Weak chloropla 37.3 3.5E+02 0.0075 25.2 21.7 55 20-74 27-81 (522)
157 PF13870 DUF4201: Domain of un 36.4 2.1E+02 0.0045 22.4 17.0 147 26-175 5-175 (177)
158 COG4372 Uncharacterized protei 36.2 3.5E+02 0.0075 24.9 21.2 34 140-173 247-280 (499)
159 PF05837 CENP-H: Centromere pr 36.0 1.7E+02 0.0037 21.2 8.7 68 112-180 5-72 (106)
160 KOG4643|consensus 35.6 5.2E+02 0.011 26.7 20.3 30 71-100 490-519 (1195)
161 PF10168 Nup88: Nuclear pore c 35.5 4.3E+02 0.0094 25.8 14.3 59 24-82 576-634 (717)
162 KOG1962|consensus 35.2 1.8E+02 0.0038 24.3 6.7 27 26-52 150-176 (216)
163 PF05278 PEARLI-4: Arabidopsis 33.9 3.1E+02 0.0067 23.6 11.8 66 35-100 194-259 (269)
164 PRK14011 prefoldin subunit alp 33.2 2.3E+02 0.005 21.9 11.8 42 105-146 90-131 (144)
165 PF04012 PspA_IM30: PspA/IM30 33.1 2.6E+02 0.0056 22.5 17.7 111 25-137 28-139 (221)
166 PF14915 CCDC144C: CCDC144C pr 33.0 3.4E+02 0.0073 23.8 21.2 149 26-174 62-264 (305)
167 PF05557 MAD: Mitotic checkpoi 32.9 14 0.00031 35.5 0.0 35 123-157 184-218 (722)
168 PF04102 SlyX: SlyX; InterPro 32.3 1.5E+02 0.0034 19.7 6.2 42 108-149 9-50 (69)
169 KOG1899|consensus 32.0 5E+02 0.011 25.5 14.9 137 31-170 150-289 (861)
170 KOG0979|consensus 31.8 5.9E+02 0.013 26.2 15.4 69 12-83 236-304 (1072)
171 PHA01750 hypothetical protein 31.8 1.4E+02 0.003 20.4 4.6 47 7-53 22-68 (75)
172 PF02994 Transposase_22: L1 tr 30.8 1.6E+02 0.0035 26.2 6.2 41 134-174 147-187 (370)
173 KOG4593|consensus 30.7 5.3E+02 0.011 25.3 21.8 77 25-101 120-197 (716)
174 PF06785 UPF0242: Uncharacteri 30.0 4.1E+02 0.0089 23.9 16.7 24 111-134 149-172 (401)
175 PF05701 WEMBL: Weak chloropla 29.8 4.6E+02 0.01 24.4 21.7 18 29-46 174-191 (522)
176 PF04012 PspA_IM30: PspA/IM30 29.7 3E+02 0.0064 22.1 20.5 132 9-146 2-134 (221)
177 PF05700 BCAS2: Breast carcino 29.2 3.2E+02 0.0069 22.3 9.8 67 107-176 140-206 (221)
178 PF14389 Lzipper-MIP1: Leucine 28.8 1.3E+02 0.0028 21.1 4.4 73 55-136 8-80 (88)
179 COG4372 Uncharacterized protei 28.5 4.7E+02 0.01 24.1 19.8 75 27-101 81-155 (499)
180 PF08232 Striatin: Striatin fa 28.1 2.7E+02 0.0058 21.1 9.2 39 103-141 25-63 (134)
181 PRK02119 hypothetical protein; 27.9 2E+02 0.0043 19.5 6.3 24 114-137 20-43 (73)
182 smart00787 Spc7 Spc7 kinetocho 27.2 4.2E+02 0.0091 23.1 17.7 43 25-67 149-191 (312)
183 PRK00295 hypothetical protein; 27.1 2E+02 0.0043 19.2 6.0 42 108-149 10-51 (68)
184 PF06246 Isy1: Isy1-like splic 27.1 1.2E+02 0.0025 25.9 4.5 26 118-143 72-97 (255)
185 PRK10361 DNA recombination pro 27.0 5.2E+02 0.011 24.1 20.7 20 82-101 98-117 (475)
186 KOG0239|consensus 26.6 6E+02 0.013 24.7 10.5 87 11-99 227-316 (670)
187 PF12325 TMF_TATA_bd: TATA ele 26.5 2.8E+02 0.0061 20.8 12.0 44 24-67 20-63 (120)
188 PF09730 BicD: Microtubule-ass 26.4 6.3E+02 0.014 24.9 17.3 55 35-96 266-320 (717)
189 PF02994 Transposase_22: L1 tr 26.0 3.1E+02 0.0067 24.4 7.2 44 110-153 144-187 (370)
190 PF05278 PEARLI-4: Arabidopsis 25.9 4.3E+02 0.0093 22.8 14.0 70 103-172 193-262 (269)
191 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.8 2.8E+02 0.0061 20.6 18.4 96 33-130 23-118 (132)
192 PHA02414 hypothetical protein 25.4 2.8E+02 0.006 20.4 7.4 51 127-177 32-82 (111)
193 PF13870 DUF4201: Domain of un 25.2 3.3E+02 0.0072 21.2 16.1 120 25-145 54-173 (177)
194 COG1340 Uncharacterized archae 25.1 4.6E+02 0.01 22.9 21.9 27 47-73 61-87 (294)
195 KOG3068|consensus 24.5 1.1E+02 0.0023 26.1 3.7 26 118-143 70-95 (268)
196 COG2882 FliJ Flagellar biosynt 24.4 3.5E+02 0.0075 21.1 15.5 99 38-164 20-118 (148)
197 PF10212 TTKRSYEDQ: Predicted 24.3 6.1E+02 0.013 24.0 13.5 27 105-131 482-508 (518)
198 PF09789 DUF2353: Uncharacteri 24.1 5E+02 0.011 22.9 11.7 38 32-69 7-44 (319)
199 cd00584 Prefoldin_alpha Prefol 23.5 3E+02 0.0065 20.1 11.6 30 107-136 91-120 (129)
200 KOG4673|consensus 23.4 7.4E+02 0.016 24.6 16.1 35 122-156 521-555 (961)
201 PRK10722 hypothetical protein; 23.3 3.3E+02 0.0072 23.1 6.5 52 10-74 140-195 (247)
202 PF06785 UPF0242: Uncharacteri 23.2 5.5E+02 0.012 23.1 12.9 57 33-89 112-168 (401)
203 KOG4005|consensus 23.1 4.8E+02 0.01 22.3 8.7 59 25-83 88-146 (292)
204 PF03148 Tektin: Tektin family 23.1 5.4E+02 0.012 22.9 19.6 55 122-176 315-369 (384)
205 PF12958 DUF3847: Protein of u 23.0 2.8E+02 0.0061 19.6 8.1 56 30-101 4-59 (86)
206 PF11932 DUF3450: Protein of u 22.9 4.3E+02 0.0094 21.8 13.4 15 115-129 61-75 (251)
207 PF04420 CHD5: CHD5-like prote 22.7 3.7E+02 0.008 20.9 6.6 52 25-76 38-94 (161)
208 PRK09343 prefoldin subunit bet 22.7 3.2E+02 0.007 20.2 7.7 58 7-67 54-111 (121)
209 PF14992 TMCO5: TMCO5 family 22.6 5.1E+02 0.011 22.4 8.0 60 10-69 113-172 (280)
210 PF08912 Rho_Binding: Rho Bind 22.1 2.7E+02 0.0058 19.0 6.0 45 55-99 3-47 (69)
211 PF12777 MT: Microtubule-bindi 22.0 5.3E+02 0.012 22.4 19.5 69 107-175 239-307 (344)
212 PF05622 HOOK: HOOK protein; 22.0 30 0.00065 33.4 0.0 11 31-41 295-305 (713)
213 PF11180 DUF2968: Protein of u 21.9 4.5E+02 0.0097 21.5 13.1 59 67-131 89-147 (192)
214 COG3074 Uncharacterized protei 21.7 2.8E+02 0.0061 19.1 9.0 45 114-158 8-52 (79)
215 PF02370 M: M protein repeat; 21.7 1.4E+02 0.0031 15.7 3.4 18 50-67 3-20 (21)
216 PF13887 MRF_C1: Myelin gene r 21.6 82 0.0018 18.8 1.8 19 154-172 16-34 (36)
217 cd00890 Prefoldin Prefoldin is 21.4 3.2E+02 0.0069 19.6 11.6 37 111-147 88-124 (129)
218 PRK00736 hypothetical protein; 21.3 2.6E+02 0.0057 18.6 7.6 31 112-142 21-51 (68)
219 PF02183 HALZ: Homeobox associ 20.9 2.2E+02 0.0047 17.5 5.4 41 108-148 3-43 (45)
220 PF11932 DUF3450: Protein of u 20.9 4.8E+02 0.01 21.5 13.5 18 51-68 38-55 (251)
221 PF10046 BLOC1_2: Biogenesis o 20.7 3.2E+02 0.007 19.4 11.6 54 6-67 1-54 (99)
222 PRK15422 septal ring assembly 20.6 3.1E+02 0.0068 19.2 9.1 21 125-145 54-74 (79)
223 COG3883 Uncharacterized protei 20.4 5.5E+02 0.012 22.0 17.6 27 29-55 33-59 (265)
224 PF08232 Striatin: Striatin fa 20.0 3.9E+02 0.0086 20.2 6.4 59 122-180 9-67 (134)
225 PF05529 Bap31: B-cell recepto 20.0 3E+02 0.0065 21.7 5.4 18 56-73 155-172 (192)
No 1
>KOG0161|consensus
Probab=99.91 E-value=6e-23 Score=206.08 Aligned_cols=174 Identities=40% Similarity=0.526 Sum_probs=169.5
Q ss_pred hhHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy4658 6 AAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA 85 (182)
Q Consensus 6 ~~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~ 85 (182)
-.++|++|||||++++ .+++|.++++++..+++.+.+.+..+.+++..+..+..++++|+.+|+++++.++++++.+
T Consensus 820 W~~Lf~kvkPLL~~~~---~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~ 896 (1930)
T KOG0161|consen 820 WWRLFTKVKPLLKVTK---TEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELL 896 (1930)
T ss_pred HHHHHHHHHHHHHhhh---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-------------------------------------------hhhhhhhHHhhhhhHHHHHhh
Q psy4658 86 AKLAAQKADLETQLAA-------------------------------------------DQDKATKDHQIRNLNDEIAHQ 122 (182)
Q Consensus 86 ~~L~~~K~eLE~~l~e-------------------------------------------e~EK~~~e~kik~l~~el~~~ 122 (182)
.++...+.+++..+.+ +.+++++++++++|++++..+
T Consensus 897 ~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~ 976 (1930)
T KOG0161|consen 897 ERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSL 976 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhhC
Q psy4658 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182 (182)
Q Consensus 123 ~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~r 182 (182)
++.+++|+++++.++++++++.++++.++++++++.|.+.+|++++++++..|+++++.|
T Consensus 977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen 977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998865
No 2
>KOG0161|consensus
Probab=98.34 E-value=0.0001 Score=76.34 Aligned_cols=141 Identities=28% Similarity=0.363 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------hhhhhhhHHhhh
Q psy4658 42 SLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--------DQDKATKDHQIR 113 (182)
Q Consensus 42 ~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--------e~EK~~~e~kik 113 (182)
++.........+++.+.+|..++..+...++...+.++..+++...|.+.+..|+..|.+ ..-.+..+...+
T Consensus 965 ~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen 965 KLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444446777888999999999999999999999999999999999999999998 222556666777
Q ss_pred hhHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhhC
Q psy4658 114 NLNDEIAHQDELINKLNKEK-------KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182 (182)
Q Consensus 114 ~l~~el~~~~e~i~KL~kEK-------k~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~r 182 (182)
++.+++....++|.-+...+ +..+..+..+...+..+..-++.+++....|+..|.+|.+.|+.|+..|
T Consensus 1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666555444444 4445577778888888888899999999999999999999999988654
No 3
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.87 E-value=0.0056 Score=51.03 Aligned_cols=156 Identities=26% Similarity=0.380 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH----------
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKAD---------- 94 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~e---------- 94 (182)
...++......+..+...+......+...+..+..|..-...|...|..-.+.+..+..++..+.+.-.+
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555666666666666666666666666666666666555555555555544444444433332
Q ss_pred -----------HHHHHhh----------------------h--hh-----hhhhHHhhhhhHHHHHhhHHHH-------H
Q psy4658 95 -----------LETQLAA----------------------D--QD-----KATKDHQIRNLNDEIAHQDELI-------N 127 (182)
Q Consensus 95 -----------LE~~l~e----------------------e--~E-----K~~~e~kik~l~~el~~~~e~i-------~ 127 (182)
||.++.+ + .+ =-..+.+|..|+.++.....++ .
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2222222 1 11 1144455555555555544443 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658 128 KLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180 (182)
Q Consensus 128 KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk 180 (182)
+.+.--..++..+..+...|..-+..+........+|+..|+.|++.|..++.
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566677899999999999999999999999999999999999987764
No 4
>PRK11637 AmiB activator; Provisional
Probab=96.93 E-value=0.29 Score=44.10 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
....+.....++..+...+.........++..+..+..+...+..++..-...+...+.....+...-..++..+..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776666666666666666666666666666666666666666666666665555555555444
No 5
>KOG1003|consensus
Probab=96.73 E-value=0.25 Score=40.41 Aligned_cols=152 Identities=23% Similarity=0.288 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQ----ERAAKLAAQKADLETQLA 100 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~E----e~~~~L~~~K~eLE~~l~ 100 (182)
+++.+......+..+.......+..++-|+....++....+.+..||..-+-...++. +..-.|.-...+||.-..
T Consensus 23 aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee 102 (205)
T KOG1003|consen 23 AQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE 102 (205)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444555555555555555555666777888888888888888888877655555554 444444444445554221
Q ss_pred hhhhhhhhHHhhhhhHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHH
Q psy4658 101 ADQDKATKDHQIRNLNDEIAHQDELINK-------LNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELED 173 (182)
Q Consensus 101 ee~EK~~~e~kik~l~~el~~~~e~i~K-------L~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~ 173 (182)
- --..+++|..|.+++.....++.. +...--..+..+..+++.|-.-+-++.++.+.-.+|+-.+||||+
T Consensus 103 r---aE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~ 179 (205)
T KOG1003|consen 103 R---AEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEE 179 (205)
T ss_pred H---HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHH
Confidence 1 224566677777776665544443 444444456688899999999999999999999999999999999
Q ss_pred hHHHHh
Q psy4658 174 SLEREK 179 (182)
Q Consensus 174 ~Le~Ek 179 (182)
.+...+
T Consensus 180 kl~~~k 185 (205)
T KOG1003|consen 180 KLEEAK 185 (205)
T ss_pred hhHHHH
Confidence 987654
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.70 E-value=0.73 Score=45.64 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHH
Q psy4658 118 EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELE 172 (182)
Q Consensus 118 el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE 172 (182)
.+......+..+..+...+...+..+...+..-......+......+...+..++
T Consensus 442 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333444333344444444444
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.51 E-value=0.86 Score=43.95 Aligned_cols=120 Identities=25% Similarity=0.387 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh------------------------------
Q psy4658 52 EVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA------------------------------ 101 (182)
Q Consensus 52 elE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e------------------------------ 101 (182)
.+...+..|....+.|..+.+.++.++.-.|.+.......+..+|.+|.+
T Consensus 464 qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~ 543 (697)
T PF09726_consen 464 QLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESC 543 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHH
Confidence 34555666777777777788888888888888888888888888888877
Q ss_pred hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHhhhhHH-------HHHHHHHhh
Q psy4658 102 DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA-------GEVTQKTAEELQAAEDKVNHLN-------KVKAKLEQT 167 (182)
Q Consensus 102 e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~l-------ee~~~~~~~~l~~Ee~k~~~l~-------K~k~Kle~~ 167 (182)
..-++..|..++.|..++...+|.+..+..+...+ +....-+...|++-.||..||. ++|.-|-+.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa 623 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11245667778888888888888888888776322 2246677788888888887774 445555555
Q ss_pred HHHH
Q psy4658 168 LDEL 171 (182)
Q Consensus 168 l~dl 171 (182)
+.|-
T Consensus 624 Lg~a 627 (697)
T PF09726_consen 624 LGDA 627 (697)
T ss_pred HHHH
Confidence 4443
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.49 E-value=0.4 Score=39.91 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=30.6
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDEL 171 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dl 171 (182)
..+.+|+.|...+........-..+....|+..+..+-+.|.....+.. .+...|.+++.+|
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~---~~~~eld~~l~el 234 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK---KVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555554444443 3334444444443
No 9
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.48 E-value=0.0007 Score=66.12 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 103 QDKATKDHQIRNLNDEIAH-------QDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~~-------~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
+.|...+.+++.++..+.. ....++.+...+..++..+..+...|...+.+++++++.+..|+++|+|+...|
T Consensus 173 k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~l 252 (859)
T PF01576_consen 173 KAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQL 252 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455666666666666555 456677777888888889999999999999999999999999999999999999
Q ss_pred HHHhhhC
Q psy4658 176 EREKKLR 182 (182)
Q Consensus 176 e~Ekk~r 182 (182)
+.|.+.+
T Consensus 253 eeEtr~k 259 (859)
T PF01576_consen 253 EEETRAK 259 (859)
T ss_dssp -------
T ss_pred HhHhhhh
Confidence 9887753
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.33 E-value=1.3 Score=44.82 Aligned_cols=63 Identities=29% Similarity=0.445 Sum_probs=27.1
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
..+...+..+...+..+......+......+......-++..+.+...+..+..++..++..+
T Consensus 838 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444444444444444444433
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.33 E-value=1.2 Score=43.83 Aligned_cols=47 Identities=36% Similarity=0.355 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
.++..+...+..+...+.........++..+..+..+...+...+..
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 723 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454555444444444444444444444444444433333
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.11 E-value=0.7 Score=38.91 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHHHhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI--QERAAKLAAQKADLETQLAAD 102 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~--Ee~~~~L~~~K~eLE~~l~ee 102 (182)
..+.+.+...++..++..+........+++.+...+..+...+..++..-...+..+ +..+..| .
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL-------------~ 95 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRAL-------------N 95 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-------------H
Confidence 556666666666666666666666666655555555555555544443332222111 1111111 3
Q ss_pred hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy4658 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKV 154 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~ 154 (182)
.+-..+..++.+|++++..+.+.+.++.++...+.+.+..+..++.+.+..+
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888888988888899998888888888887777777655544
No 13
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.05 E-value=1.1 Score=40.63 Aligned_cols=150 Identities=18% Similarity=0.229 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA----- 101 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e----- 101 (182)
+.+.....++..+...+......+..|+..+.++..+.+.+..+|-.....+.......+.+......|+.+-.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777777777777776666666666666666665555544422
Q ss_pred --------------------------------------------------------hhhhhhhHHhhhhhHHHHHhhHHH
Q psy4658 102 --------------------------------------------------------DQDKATKDHQIRNLNDEIAHQDEL 125 (182)
Q Consensus 102 --------------------------------------------------------e~EK~~~e~kik~l~~el~~~~e~ 125 (182)
-..++....+-..+..-+..+.+.
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q 197 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ 197 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111333444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 126 INKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 126 i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
..+|..-...-..-.+++..++.....+...|......|...|.-++....
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555555444445566778888888888888888888888888888874433
No 14
>KOG0250|consensus
Probab=95.93 E-value=2 Score=43.06 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhh
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQD 104 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~E 104 (182)
+.++....+.+...++.........++...++..+.+-.+....+++.-.+......+.+..+.+.-..+-..+.+ +.+
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444443333333322222222222222111111 122
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
....++.++.+...+..+..+|+.+.++- ++.+..++..-+++.++|.+...+++.++..|.+.+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444444444444444444332 345555555566666666666666666665555443
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=95.84 E-value=2 Score=41.89 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHH
Q psy4658 126 INKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDEL 171 (182)
Q Consensus 126 i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dl 171 (182)
+..+......+......+...+..-+.+++.+......++..++++
T Consensus 351 ~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444443334444444433
No 16
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.77 E-value=0.67 Score=35.89 Aligned_cols=131 Identities=24% Similarity=0.300 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy4658 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATK 108 (182)
Q Consensus 29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~ 108 (182)
|..+.-+...+.+.....+...+.++..+..+..+++.|...++.--..+..+++....+ +..++.. ++...
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~---k~~lee~-----~~~~~ 73 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA---KEKLEES-----EKRKS 73 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhH-----HHHHH
Confidence 344555555566666666666666666666666666666555544443333333322211 1111110 11100
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
....+...|.-|..+....+..+..+...|..-.-++.++.+...-|+...+++|..++
T Consensus 74 ---------~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 74 ---------NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred ---------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 00122233333333333344444555666666666666666666666666666666554
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=95.43 E-value=2.9 Score=40.82 Aligned_cols=73 Identities=26% Similarity=0.358 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 28 El~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
.+..++.++..++..+...+...+ ....+..+......+...+....+.+.+.++++..|...-..|+..+.+
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~-~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~ 555 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333222 2344444555555555555555666666666666666666666655543
No 18
>KOG0250|consensus
Probab=95.42 E-value=3.3 Score=41.54 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=54.3
Q ss_pred hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy4658 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAA 86 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~ 86 (182)
+-.|-.++-| .+ +++++..+++....+.+++.........+..++....+.++.+-....+-...+.++-....
T Consensus 274 ~~V~~~~~ql---~~---~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~ 347 (1074)
T KOG0250|consen 274 AWVNEVERQL---NN---QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD 347 (1074)
T ss_pred HHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455666664 55 88888888888888888888877777666666666555555555555444444444444444
Q ss_pred HHHHHHHHHHHHHhh
Q psy4658 87 KLAAQKADLETQLAA 101 (182)
Q Consensus 87 ~L~~~K~eLE~~l~e 101 (182)
.+....++++..+.+
T Consensus 348 ~~~re~~~~~~~~~~ 362 (1074)
T KOG0250|consen 348 DLRREVNDLKEEIRE 362 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.98 E-value=4.3 Score=41.75 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.9
Q ss_pred HHHHHHhhHHHHHHh
Q psy4658 160 VKAKLEQTLDELEDS 174 (182)
Q Consensus 160 ~k~Kle~~l~dlE~~ 174 (182)
.+..|+..++++...
T Consensus 882 ~r~~le~~L~el~~e 896 (1311)
T TIGR00606 882 RRQQFEEQLVELSTE 896 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 20
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.91 E-value=0.0071 Score=59.18 Aligned_cols=143 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------hhhh
Q psy4658 34 EKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--------DQDK 105 (182)
Q Consensus 34 eel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--------e~EK 105 (182)
..|..+.+.+......+..|+.....|..+..|+...|......++..+-+...+.+.-.++-..+.+ ..+.
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~ 407 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREA 407 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444555555555555555555544444444444333333333333333222 4455
Q ss_pred hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 106 ATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 106 ~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
......+..|...+....+.+..+.++.+.|...+..+.+.+.....-+..|.+.+..|++.++++...|+
T Consensus 408 r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le 478 (859)
T PF01576_consen 408 RELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE 478 (859)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888888899999999999999999999999998888899999999999998888766554
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.59 E-value=4.1 Score=38.27 Aligned_cols=57 Identities=19% Similarity=0.358 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy4658 36 VAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQK 92 (182)
Q Consensus 36 l~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K 92 (182)
+...++.........+++......+..++..|..++..-...+...++....|....
T Consensus 180 L~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 180 LEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444445555555665665555544444444444444444333
No 22
>KOG0612|consensus
Probab=94.35 E-value=6.9 Score=39.93 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hhhh---hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHH
Q psy4658 66 TLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-----DQDK---ATKDHQIRNLNDEIAHQDELINKLNKEKKQAG 137 (182)
Q Consensus 66 ~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-----e~EK---~~~e~kik~l~~el~~~~e~i~KL~kEKk~le 137 (182)
++.-+++.+.....+.++++..|...+..|...... +..+ .....-+..+...|..+...+..+.++.+.++
T Consensus 571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 455667777777778888888888877766655443 1111 11111133333334443333333333333332
Q ss_pred HHHHHHHHHHHHhhHhhhhHHH--HHHHHHhhHHHHHHhHHHHh
Q psy4658 138 EVTQKTAEELQAAEDKVNHLNK--VKAKLEQTLDELEDSLEREK 179 (182)
Q Consensus 138 e~~~~~~~~l~~Ee~k~~~l~K--~k~Kle~~l~dlE~~Le~Ek 179 (182)
+ .=-...+..++..+ ++.+++-.+.-+++.++++.
T Consensus 651 e-------l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~ 687 (1317)
T KOG0612|consen 651 E-------LKRENQERISDSEKEALEIKLERKLKMLQNELEQEN 687 (1317)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11222333444444 66777777777777776654
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.05 E-value=5.3 Score=37.50 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4658 42 SLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLE 96 (182)
Q Consensus 42 ~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE 96 (182)
.+.+....+.+|...+..|..+...|..++..-...+....+.+..|.....++.
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445444444444444444444444444554444444333
No 24
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.36 E-value=3.7 Score=33.48 Aligned_cols=114 Identities=17% Similarity=0.235 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKA 106 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~ 106 (182)
.-+..+.+++..++......+....+ +.++-..|.++|..-...+.+.......-.+.|..|...- .--.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~e-------i~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k---~rl~ 96 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAE-------ISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK---ARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 44556666666666555555444444 4444444444444444444444433333333333332211 0012
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAA 150 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~E 150 (182)
.++..++.|.-+...+...+.++..|+..|.........+++.-
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888888899999999999999988888888877753
No 25
>KOG0964|consensus
Probab=93.03 E-value=6.2 Score=39.53 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=23.0
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~ 152 (182)
....+++++.|..+..+++..-++..+.|-.++-.+.++.+.+.....
T Consensus 274 i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q 321 (1200)
T KOG0964|consen 274 IKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQ 321 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhh
Confidence 334455555555555555555555555554444444444444444333
No 26
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.91 E-value=9.7 Score=37.00 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--- 101 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--- 101 (182)
.-..+..++.+++.++-.+....+.+..|-..+..+......+..+-..-++.+-+.-.+=.||..--.+||...-.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34556778888888888888888888888888888888877777777777777777777777777777777754332
Q ss_pred --------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy4658 102 --------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK 159 (182)
Q Consensus 102 --------e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K 159 (182)
+.+=-+..|-|+.|.+++..+.-++.-+.+=|...+-...+.++.|+.|-+..++|.|
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577888999999999999999999888888888999999999999999888877
No 27
>KOG0933|consensus
Probab=92.81 E-value=12 Score=37.72 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
.++..+..+|+.++-.++......+.-+..+..|.-|...+...+..-...+...+..+..|...-..|+..+.
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444443
No 28
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.67 E-value=9.6 Score=36.37 Aligned_cols=95 Identities=27% Similarity=0.418 Sum_probs=53.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHH---hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 75 KSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDH---QIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAA 150 (182)
Q Consensus 75 ~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~---kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~E 150 (182)
...+.+.+..+.++.....+....+.. +.+|.+... +-+.|..++..+.+...+|+.++- ++++.|+.+
T Consensus 121 EerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~-------elt~~lq~E 193 (617)
T PF15070_consen 121 EERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENM-------ELTSALQSE 193 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-------HhhHHHHHH
Confidence 334444444444444444443333332 334443332 346777888888888888877654 355666666
Q ss_pred hHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 151 EDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 151 e~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
.--..-|++.-..++..++.+.+.++
T Consensus 194 q~~~keL~~kl~~l~~~l~~~~e~le 219 (617)
T PF15070_consen 194 QHVKKELQKKLGELQEKLHNLKEKLE 219 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655566666666655543
No 29
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.40 E-value=2.2 Score=34.38 Aligned_cols=119 Identities=23% Similarity=0.285 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD 104 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E 104 (182)
.-......+..+..+.+.++..-..+.++..+++.+..+...+...+......+......+..|.....+|+..|.+
T Consensus 65 ~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e--- 141 (194)
T PF08614_consen 65 SSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE--- 141 (194)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33455667777888888888888889999999999999999999999999999999998888888888888888854
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
...-+-.+.+++..+.=.++-+......++..+..+.+.+..
T Consensus 142 ---k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 142 ---KNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345677777777777777777777777777777777654
No 30
>KOG0977|consensus
Probab=92.18 E-value=10 Score=35.62 Aligned_cols=99 Identities=23% Similarity=0.299 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q psy4658 33 EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQI 112 (182)
Q Consensus 33 eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~ki 112 (182)
+.+|..|.+.|+-=..+..-||.++..|..+.+.|..-...+..++....+. -+.....-++.. ..++..++..|
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~--El~~ar~~l~e~---~~~ra~~e~ei 115 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEA--ELATARKLLDET---ARERAKLEIEI 115 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhh--hHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4579999999999999999999999999999999998888887776666442 111111111111 23344444555
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHH
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQA 136 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~l 136 (182)
+.|.+++..+.-...+..+.....
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~ 139 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGA 139 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhh
Confidence 555555555444444444333333
No 31
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.08 E-value=5.4 Score=32.16 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4658 36 VAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLE------------------GEKSGLSSIQERAAKLAAQKADLET 97 (182)
Q Consensus 36 l~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq------------------~E~~~l~e~Ee~~~~L~~~K~eLE~ 97 (182)
|+.|.++..+-+-.|..-+..+..|..+-.....-++ .-...++.++.||..|.++=..+-.
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRk 85 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRK 85 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666665555444333333 3344556667777777776666666
Q ss_pred HHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 98 QLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 98 ~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
.|.. +.++.+.-.+- ..+.+++-.-...++--.+.|..-|..+..|+-...--+..|.+||+.|-
T Consensus 86 mv~~ae~er~~~le~q--------------~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 86 MVESAEKERNAVLEQQ--------------VSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHhhhHHHHHH--------------HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 33322211111 11111111111112222344444555566666666666777777777776
Q ss_pred HHhh
Q psy4658 177 REKK 180 (182)
Q Consensus 177 ~Ekk 180 (182)
.|..
T Consensus 152 eEeh 155 (178)
T PF14073_consen 152 EEEH 155 (178)
T ss_pred HHHH
Confidence 6654
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.03 E-value=12 Score=36.16 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH---------------HHHHHHHHHH
Q psy4658 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA---------------AKLAAQKADL 95 (182)
Q Consensus 31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~---------------~~L~~~K~eL 95 (182)
.++..+..|.-.-.+......-||.++.....-+..+..||..|+-.-..+++.. +.+..++.+|
T Consensus 471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~l 550 (697)
T PF09726_consen 471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQL 550 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHH
Confidence 3344444444445555556677888888888999999999999876555444333 3467788899
Q ss_pred HHHHhh-hhhhhhhHHhhhhhHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh----HhhhhHHHHHHH
Q psy4658 96 ETQLAA-DQDKATKDHQIRNLNDEIAHQDE-------LINKLNKEKKQAGEVTQKTAEELQAAE----DKVNHLNKVKAK 163 (182)
Q Consensus 96 E~~l~e-e~EK~~~e~kik~l~~el~~~~e-------~i~KL~kEKk~lee~~~~~~~~l~~Ee----~k~~~l~K~k~K 163 (182)
|..+.- ..|-...|..+..++.++..+.. .+.-|.-....+++.+..+-..|.+|- |-.+.|..++..
T Consensus 551 E~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq 630 (697)
T PF09726_consen 551 ESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQ 630 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 988876 56667777777777777743322 355566677788999999999988774 556778888877
Q ss_pred HHh
Q psy4658 164 LEQ 166 (182)
Q Consensus 164 le~ 166 (182)
++.
T Consensus 631 ~ei 633 (697)
T PF09726_consen 631 LEI 633 (697)
T ss_pred HHH
Confidence 765
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.95 E-value=11 Score=35.38 Aligned_cols=68 Identities=21% Similarity=0.107 Sum_probs=51.5
Q ss_pred hcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy4658 12 KGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLS 79 (182)
Q Consensus 12 kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~ 79 (182)
...|+|.......++..+....+.+..+-+.++++...++..+.....+..-...+..+...-...+.
T Consensus 267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~ 334 (569)
T PRK04778 267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID 334 (569)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777778888899999999999999999988888888887777777777765554433333
No 34
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.85 E-value=8.2 Score=33.74 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHH-hhH
Q psy4658 47 EKARKEVEALNAKLLEEKTTLLKNLEGEKSGLS-SIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIA-HQD 123 (182)
Q Consensus 47 e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~-e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~-~~~ 123 (182)
+.....|..++.+|-.+|.+|..+|.++++-+. -.--.|..|...+..+...+.- ..+|+..++.+..=++-|. -+.
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445566777888888888888888877765532 2333444443333222222211 4567777777766555543 366
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 124 ELINKLNKEKKQAGEVTQKTAEE 146 (182)
Q Consensus 124 e~i~KL~kEKk~lee~~~~~~~~ 146 (182)
-.+.+|..+|+.|+..+.+..++
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~~~s~ 207 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQPVSA 207 (310)
T ss_pred HHHHHHHHHHHHHHHHHccccCC
Confidence 78888888888888877654333
No 35
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.69 E-value=12 Score=35.48 Aligned_cols=135 Identities=21% Similarity=0.201 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhHHHHHHHHHHHHH
Q psy4658 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE----------KSGLSSIQERAAKLAAQKA 93 (182)
Q Consensus 24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E----------~~~l~e~Ee~~~~L~~~K~ 93 (182)
..+.++..+..++..+...........+.+...+.++..+..........- .+.+.+++.-...|.....
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467778888888888888887777777777777766666665554443322 2334444444443333333
Q ss_pred HHHHHHhh-----hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH
Q psy4658 94 DLETQLAA-----DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLN 158 (182)
Q Consensus 94 eLE~~l~e-----e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~ 158 (182)
.-...+.. +.=+..+...++.|............+...+.+.+......+...++.-++..+.|.
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222 222445555566666555555555555556666666666666666666555544443
No 36
>KOG0964|consensus
Probab=91.27 E-value=18 Score=36.47 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=20.6
Q ss_pred HHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHH
Q psy4658 143 TAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLERE 178 (182)
Q Consensus 143 ~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~E 178 (182)
+..++...-++-++|-.--.+|.+.|+-+++.|.+-
T Consensus 458 ~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 458 LKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555566666677777666553
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.20 E-value=8.6 Score=32.72 Aligned_cols=44 Identities=34% Similarity=0.340 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4658 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE 74 (182)
Q Consensus 31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E 74 (182)
.++.++..++..+......+-+++.++..|..+...+....+.+
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeE 143 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEE 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45555666666666666666666666666666666555444443
No 38
>KOG0977|consensus
Probab=91.15 E-value=13 Score=34.88 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658 138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180 (182)
Q Consensus 138 e~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk 180 (182)
|.+..+...+-.--.+.+.|.....-|+.+|.||+..|..+.+
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence 3444444455555566677777777888888888888877664
No 39
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.05 E-value=3.5 Score=30.52 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=47.1
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk 180 (182)
+.+..+++.+|+..|.....++.-|-+++..|...++.+... ..+.++-..-|+..|+|+--.++.++-
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q-------~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ-------NASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555667888888888888888888888877766666655 345555666667777777776666553
No 40
>KOG0971|consensus
Probab=90.77 E-value=19 Score=36.01 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 51 KEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 51 kelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
..|-++...+.....+|++|+.+ ..-+|++...|...+..||.+|..
T Consensus 420 E~Lsr~~d~aEs~iadlkEQVDA----AlGAE~MV~qLtdknlnlEekVkl 466 (1243)
T KOG0971|consen 420 ERLSRELDQAESTIADLKEQVDA----ALGAEEMVEQLTDKNLNLEEKVKL 466 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhcHHHHHHHHHhhccCHHHHHHH
Confidence 33444444455555555555533 445677777877777777776654
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.23 E-value=11 Score=32.15 Aligned_cols=130 Identities=21% Similarity=0.267 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhh
Q psy4658 34 EKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQI 112 (182)
Q Consensus 34 eel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~ki 112 (182)
.++..|.+.|+--..+...||..+..|..+.+.+.............. ....-.+|-..|.+ -.++...+..+
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~------ye~el~~lr~~id~~~~eka~l~~e~ 77 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEM------YEEELRELRRQIDDLSKEKARLELEI 77 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH------HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccc------hhhHHHHhHHhhhhHHHHhhHHhhhh
Confidence 567788888888888888888888877777777655543322222111 11222223333333 45577777777
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
.++..++..+...+.........++..+..+..++. ..+-.+..|+..|..|.+.|.
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld-------~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD-------EETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hhhhhHhHHHHHHHHHHHHHH
Confidence 888888888777777777777777777777776654 333444555555555555443
No 42
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.00 E-value=10 Score=31.69 Aligned_cols=93 Identities=26% Similarity=0.399 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhh
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQD 104 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~E 104 (182)
-.+|..+..+|..--+.+..++....++...+..|..|+..+.+.|+........ ||..|+. ..+
T Consensus 10 ~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~--------------lE~iIkqa~~e 75 (230)
T PF10146_consen 10 TLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINT--------------LENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 3456666666666667777777888888888888888888887777665554444 4455543 344
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKE 132 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kE 132 (182)
+......+..+.+++.-+.+.|..+.++
T Consensus 76 r~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666778888888888888766
No 43
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.89 E-value=9.6 Score=31.12 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
++|+..+..-+..+.+....--+..+.++.....|..+...|+...-.-.........+...|...+..|-.+|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 56666666666666666666667777777777777777777776655544444444555555555555555555
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.83 E-value=11 Score=31.77 Aligned_cols=120 Identities=16% Similarity=0.264 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD 104 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E 104 (182)
.+.++..+......-.+.|.+.......+-..++.+..+..+|..|...-...+.++.++..+... .| .-++++.+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~---kl-~~v~~~~e 90 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE---KL-SAVKDERE 90 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-hccccHHH
Confidence 555555555555556666666666666666666666666666666655555544444443332211 11 22222333
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQ 148 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~ 148 (182)
-.++.+-+-.+.+.+..+.+.+..+..+...++..+..+...+.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.70 E-value=30 Score=36.51 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 34 EKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 34 eel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
.+...+...|...+....++...+..+......|..+.+.
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEk 332 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQA 332 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 46
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.23 E-value=12 Score=31.40 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-h
Q psy4658 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-D 102 (182)
Q Consensus 24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e 102 (182)
+.+..|..++++...+...|...+..-..|+++...+..+...|... +..+...+..|...... .
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k--------------~~eaee~~~rL~~~~~~~~ 74 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK--------------RQEAEEEKQRLEEEAEMQE 74 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777666666555322 22222222333322222 4
Q ss_pred hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
.++..++.++..++..+..+.+....-..+...|+..+.....++..
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778888888888888888888888888766666665443
No 47
>KOG0612|consensus
Probab=88.23 E-value=34 Score=35.25 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 121 HQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 121 ~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
...+.+.-+...+..+.....++..-+..+-....++.-...-+...+..|+..++
T Consensus 585 ~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~ 640 (1317)
T KOG0612|consen 585 DLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLK 640 (1317)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555555655556666666666666666666666666666666666666666544
No 48
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.18 E-value=17 Score=31.80 Aligned_cols=116 Identities=28% Similarity=0.363 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHhhhhhh--hhhHHhhhhhHHHHHhhHHHHHHHHH
Q psy4658 55 ALNAKLLEEKTTLLKNLEGEKSGLSS-IQERAAKLAAQKADLETQLAADQDK--ATKDHQIRNLNDEIAHQDELINKLNK 131 (182)
Q Consensus 55 ~k~~~L~~EK~~L~~qLq~E~~~l~e-~Ee~~~~L~~~K~eLE~~l~ee~EK--~~~e~kik~l~~el~~~~e~i~KL~k 131 (182)
.++..|..+|..|...++.+-+-+.+ ..-+..+|..-|.+|+..+..+.+- ..+-.+|..|..+..........|.+
T Consensus 84 Kkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 84 KKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566888888898888776555544 4778899999999999999653332 24455677777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 132 EKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 132 EKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
+|-.++-.+.. ..|--+|.|.|.-.+|+..---|+..|+
T Consensus 164 EKVdlEn~LE~------EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 164 EKVDLENTLEQ------EQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88887754443 3445567777777777666555555554
No 49
>KOG0978|consensus
Probab=88.05 E-value=27 Score=33.90 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhH
Q psy4658 87 KLAAQKADLETQLAADQDKA-TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHL 157 (182)
Q Consensus 87 ~L~~~K~eLE~~l~ee~EK~-~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l 157 (182)
.|...+..|+.++..-+..+ .....|..+++++..+..+.+++.++...+...........+.-......|
T Consensus 500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L 571 (698)
T KOG0978|consen 500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL 571 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444554443322222 334457888888888888888888888777665444444433333333333
No 50
>KOG1029|consensus
Probab=87.90 E-value=30 Score=34.24 Aligned_cols=118 Identities=21% Similarity=0.293 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhh-------hhhhHHHHHHHHHHHHHHHHHHHhh-----hhhhh---
Q psy4658 45 REEKARKEVEALNAKLLEEKTTLLKNLEG---EKS-------GLSSIQERAAKLAAQKADLETQLAA-----DQDKA--- 106 (182)
Q Consensus 45 k~e~~rkelE~k~~~L~~EK~~L~~qLq~---E~~-------~l~e~Ee~~~~L~~~K~eLE~~l~e-----e~EK~--- 106 (182)
+.++.|+++| ++.++.-|++..++.+.+ +++ .....+-....|.-...+|+.+|.| ..-|.
T Consensus 397 ~rEaar~ElE-kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie 475 (1118)
T KOG1029|consen 397 RREAAREELE-KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIE 475 (1118)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHH
Confidence 3344455544 345577777766554432 222 2223344555666666677777766 01111
Q ss_pred ----hhHH---hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q psy4658 107 ----TKDH---QIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAK 163 (182)
Q Consensus 107 ----~~e~---kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~K 163 (182)
..|- -+..|...|..+...+.+|.-|+..|...+.+.....-....+.+.|.+...+
T Consensus 476 ~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ 539 (1118)
T KOG1029|consen 476 EVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRK 539 (1118)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHH
Confidence 1111 13344455555556666666666666665555544444444445555554433
No 51
>PRK09343 prefoldin subunit beta; Provisional
Probab=87.89 E-value=9.5 Score=28.54 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=20.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 67 L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
|..+++.....+......+..+..++..|+..+.+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e 39 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELRE 39 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566666666666655554
No 52
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.57 E-value=27 Score=33.40 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHH
Q psy4658 51 KEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKL 129 (182)
Q Consensus 51 kelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL 129 (182)
.+|+..++.|..++..|...|+++.-..-+...++..|...-..+...|.. ..+-.++.++-..+.+.+.+..-.+..+
T Consensus 170 ~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l 249 (617)
T PF15070_consen 170 AELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQL 249 (617)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544444444433333333332 1222333333333333344433344445
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhHhh
Q psy4658 130 NKEKKQAGEV---TQKTAEELQAAEDKV 154 (182)
Q Consensus 130 ~kEKk~lee~---~~~~~~~l~~Ee~k~ 154 (182)
..++-.|.-. ..++.+.|+.++.+.
T Consensus 250 ~~e~e~L~~q~l~Qtql~d~lq~eE~q~ 277 (617)
T PF15070_consen 250 ASEKEELHKQLLQQTQLMDRLQHEESQG 277 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555554432 245567777666554
No 53
>KOG0999|consensus
Probab=87.52 E-value=27 Score=33.24 Aligned_cols=129 Identities=19% Similarity=0.301 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-------Hhh--
Q psy4658 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQ-------LAA-- 101 (182)
Q Consensus 31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~-------l~e-- 101 (182)
.++.++++++-.+......+..|+..+..+..-..++..+--.-++.+-+.-.|-.||...=.+||.. |+.
T Consensus 111 eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 111 ELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 44555555555555555555555555555555555555554445555666666666666666666542 222
Q ss_pred --hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy4658 102 --DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK 159 (182)
Q Consensus 102 --e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K 159 (182)
+.+--.+.+.|+.|++++.-+.-+......=|..-+-...+.+..++.|.+..+.|.|
T Consensus 191 ~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkk 250 (772)
T KOG0999|consen 191 QSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKK 250 (772)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555667778888888887766666666555666666778888889999888887655
No 54
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.84 E-value=17 Score=30.38 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 28 El~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L 67 (182)
++..+..+|.+++..+..+....+.-+.-+..+..|++.|
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L 44 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEEL 44 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555554455555555444
No 55
>KOG0996|consensus
Probab=86.78 E-value=41 Score=34.60 Aligned_cols=20 Identities=15% Similarity=0.322 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLA 44 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~ 44 (182)
..+++...++.++...+.+.
T Consensus 339 ~~~~~~~~~e~lk~~~ek~~ 358 (1293)
T KOG0996|consen 339 MQEELEKIEEGLKDENEKFD 358 (1293)
T ss_pred HHHHHHHHHhHHHHHHHHhh
Confidence 45555555555555554444
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.66 E-value=13 Score=28.72 Aligned_cols=75 Identities=28% Similarity=0.317 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH---HHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAK---LAAQKADLETQL 99 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~---L~~~K~eLE~~l 99 (182)
+..-....+..++.+...+...+.....|..++..|..+.-.+..+|..-...+.+.+..... |..+-..||..+
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence 334556777888888888888888888888888888888888888888888888777765433 444444555544
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.50 E-value=42 Score=34.48 Aligned_cols=99 Identities=17% Similarity=0.360 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--hhhhhhh
Q psy4658 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--DQDKATK 108 (182)
Q Consensus 31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--e~EK~~~ 108 (182)
.+..++..+...+........+++..+.+.....+.+...+..-.-.+..++....+|......+...+.. ...+...
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888888888888889988888888888888888777777777788888888888888887765 2334455
Q ss_pred HHhhhhhHHHHHhhHHHHHHH
Q psy4658 109 DHQIRNLNDEIAHQDELINKL 129 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL 129 (182)
..++..+..++......+..+
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444443
No 58
>PRK11637 AmiB activator; Provisional
Probab=85.71 E-value=26 Score=31.45 Aligned_cols=78 Identities=21% Similarity=0.135 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
....++.....++..+...+.........++.++..+....+.+..++......+...+.....+...-..+...+..
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888888888888888888888888777777777777777777766666666655555544444
No 59
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.34 E-value=31 Score=31.95 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHH-------HHHHHHH
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG---EKSGLSSIQERAAKLAAQK-------ADLETQL 99 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~---E~~~l~e~Ee~~~~L~~~K-------~eLE~~l 99 (182)
-++-+-|.+|+..-.+.+....+|+-.+.-|......|+...-. ..+.+....+....|+..| ++++..+
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~l 392 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTL 392 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHH
Confidence 46777888899988888999999888888888877777655422 2333333344333333322 2222222
Q ss_pred hh---------------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Q psy4658 100 AA---------------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKL 164 (182)
Q Consensus 100 ~e---------------e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kl 164 (182)
.. ..+|.++.-+++++...+..+++.+.---.+|...--..-+.-..|..-++-+..|+..|..+
T Consensus 393 qnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgel 472 (527)
T PF15066_consen 393 QNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGEL 472 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22 233333333444444444333333222222222222233333344444555566666677777
Q ss_pred HhhHHHHHHhHHHHhhh
Q psy4658 165 EQTLDELEDSLEREKKL 181 (182)
Q Consensus 165 e~~l~dlE~~Le~Ekk~ 181 (182)
+-...--=+.|.+|+..
T Consensus 473 Ekat~SALdlLkrEKe~ 489 (527)
T PF15066_consen 473 EKATTSALDLLKREKET 489 (527)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65554444455555543
No 60
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.18 E-value=19 Score=29.39 Aligned_cols=139 Identities=20% Similarity=0.245 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHH-------Hhh-hhhhh
Q psy4658 38 QTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI---QERAAKLAAQKADLETQ-------LAA-DQDKA 106 (182)
Q Consensus 38 ~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~---Ee~~~~L~~~K~eLE~~-------l~e-e~EK~ 106 (182)
+|.+...+......-+++-..+|..+..+|..++.+-+-.+.-+ ++....|...-..||+. ... +.+.+
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455556666666666666666666554333333 22233232222233322 221 55566
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
++...|-.|+++-..+......+.+..+.|......+...+-.-+.-+++-...-..-...+++|...++
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666665555555555555555544444555544444444444444444444455444333
No 61
>PRK09039 hypothetical protein; Validated
Probab=84.07 E-value=29 Score=30.56 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~ 62 (182)
.+.+|..+..++..+-+.+.=.......++..+..+..
T Consensus 51 ~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~ 88 (343)
T PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRA 88 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 67777777777777776665555555555444443333
No 62
>PRK09039 hypothetical protein; Validated
Probab=83.36 E-value=31 Score=30.37 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~ 90 (182)
...++..++.++..+...+.. |-+.+.--.....+|+..+..-...+..++..+.+|..
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~-------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE-------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555443 32222222233334444444444444444444444444
No 63
>KOG4674|consensus
Probab=83.32 E-value=71 Score=34.43 Aligned_cols=170 Identities=16% Similarity=0.120 Sum_probs=73.9
Q ss_pred hhHhhhHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Q psy4658 2 VDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLARE------------------EKARKEVEALNAKLLEE 63 (182)
Q Consensus 2 ~~~~~~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~------------------e~~rkelE~k~~~L~~E 63 (182)
++.+.+-.|..+.|++++. ...-+..+-.+|..++....+. ..+...+......+..+
T Consensus 6 ~~~~~~~~~~~~~~~V~~d----~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e 81 (1822)
T KOG4674|consen 6 VESFLDVLSEDISPLVDVD----VFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNE 81 (1822)
T ss_pred HHHHhhcchhhcccccccH----HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788888887665 4444444444455444444333 22333333333444444
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhh-------HHhhhhhHHHHHhhHHHHHHHHHHHHH
Q psy4658 64 KTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATK-------DHQIRNLNDEIAHQDELINKLNKEKKQ 135 (182)
Q Consensus 64 K~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~-------e~kik~l~~el~~~~e~i~KL~kEKk~ 135 (182)
.+++..+|.+-..........+.++...-..|-....+ ..++... ...+..+..++..+.+.+..+..-+..
T Consensus 82 ~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e 161 (1822)
T KOG4674|consen 82 LSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSE 161 (1822)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333333333222222221111 1111111 112333444444444455555544445
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 136 AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 136 lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
++.+.+++......-.-+...+.--+.=+++....|...|
T Consensus 162 ~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL 201 (1822)
T KOG4674|consen 162 LEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSREL 201 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555544444444444444444444444444444433
No 64
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.24 E-value=30 Score=30.11 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy4658 79 SSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVN 155 (182)
Q Consensus 79 ~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~ 155 (182)
.+.......|......+...+.. +.+....+..+..++.+...++.....+.++...+.-...+..+..+.-.....
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544 445555555566666666666665556665555555444444444444333333
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.05 E-value=67 Score=33.99 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 35 KVAQTEASLAREEKARKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 35 el~~lke~l~k~e~~rkelE~k~~~L~~EK~~L 67 (182)
.|.....++.+......+++.+...|..+....
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444333333333
No 66
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.46 E-value=13 Score=25.44 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=46.5
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
++..++.-.+.|+++-+-..+|++---.+...+..+......-+..+..+.+....++..++.|+..+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555566666666666666555566666677777777777777777777777888888877664
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.06 E-value=41 Score=30.84 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLA 44 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~ 44 (182)
.+.++..+..++..+...+.
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443
No 68
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.44 E-value=5.8 Score=34.81 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=46.2
Q ss_pred hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy4658 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI 81 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~ 81 (182)
+..|..|+|+-.... ..+.++......+...+..+.........|...+.....++..|..+.+.-...+.-+
T Consensus 210 ~~v~~~V~P~~~~l~--~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 210 YEVNKEVEPKRQKLE--EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHCCCCCHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 456778889644333 4556666667777777777777777777777777777777776665555444433333
No 69
>KOG4643|consensus
Probab=81.37 E-value=66 Score=32.72 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------
Q psy4658 32 LEEKVAQTEASLAREEKAR--KEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-------- 101 (182)
Q Consensus 32 ~eeel~~lke~l~k~e~~r--kelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-------- 101 (182)
+-+++.=+++.|.+-.++- -.++..+.++.+..+++..+.-..+-..++.-+....|.-.+..|...+.=
T Consensus 276 LleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~ 355 (1195)
T KOG4643|consen 276 LLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENE 355 (1195)
T ss_pred HHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcch
Confidence 3344444555555544444 455666667777777776666666666666666666666655544433221
Q ss_pred ---------h--------hhhhhhHH----------hhhhhHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4658 102 ---------D--------QDKATKDH----------QIRNLND---EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAE 151 (182)
Q Consensus 102 ---------e--------~EK~~~e~----------kik~l~~---el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee 151 (182)
+ .-|.-.++ +-..+++ .+..+.-.+-+|.+.-..|++++.++...++.-+
T Consensus 356 E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 356 ELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111 1111111 1111222233366666778889999999988888
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHhHHHHh
Q psy4658 152 DKVNHLNKVKAKLEQTLDELEDSLEREK 179 (182)
Q Consensus 152 ~k~~~l~K~k~Kle~~l~dlE~~Le~Ek 179 (182)
+-.+.|..-+.+|...++-....+.+..
T Consensus 436 d~~K~L~~E~ekl~~e~~t~~~s~~rq~ 463 (1195)
T KOG4643|consen 436 DLEKKLQFELEKLLEETSTVTRSLSRQS 463 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8888888888888888888877776664
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.07 E-value=5.1 Score=31.36 Aligned_cols=57 Identities=23% Similarity=0.089 Sum_probs=34.9
Q ss_pred hHhhhhcCcchhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 7 AKESFKGDPNAILTRKQI--LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEE 63 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~--~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~E 63 (182)
.|.|.|.+-....-.... ..+++..++.++..+++.+.......+.+...+..|...
T Consensus 50 ~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 50 EKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred eeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666554432222111 467888999888888887777766666666555555443
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.02 E-value=49 Score=31.04 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
.+.++..+...+..+...+... ..+..+..+..+......|...++.|......++.....+...-..+......
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~ 328 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKE 328 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556666666666655554443 55666888889999999999999999888888877777776666665555444
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.78 E-value=37 Score=29.49 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 49 ARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 49 ~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
-+..|++.+..|..+.+.|...++.-...+....++...|...-..|....
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666665555555555555555555555444444443
No 73
>PF15294 Leu_zip: Leucine zipper
Probab=80.63 E-value=37 Score=29.33 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=75.3
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--------
Q psy4658 13 GDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER-------- 84 (182)
Q Consensus 13 vkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~-------- 84 (182)
..|+-.+.-++-...|+..+.+|-.+++ .+..-++........|+..|..+|..-+....+...+
T Consensus 118 L~pl~e~g~~~ll~kEi~rLq~EN~kLk-------~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q 190 (278)
T PF15294_consen 118 LEPLNESGGSELLNKEIDRLQEENEKLK-------ERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQ 190 (278)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 3454333333334455555555555555 5555566677777777777777777666533332221
Q ss_pred -----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy4658 85 -----AAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK 159 (182)
Q Consensus 85 -----~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K 159 (182)
-..+...|.+++..+. ......++|.+.+...-..+-+++.. +.-....+...++ +-...+++-.
T Consensus 191 ~l~dLE~k~a~lK~e~ek~~~------d~~~~~k~L~e~L~~~KhelL~~Qeq---L~~aekeLekKfq-qT~ay~NMk~ 260 (278)
T PF15294_consen 191 DLSDLENKMAALKSELEKALQ------DKESQQKALEETLQSCKHELLRVQEQ---LSLAEKELEKKFQ-QTAAYRNMKE 260 (278)
T ss_pred chhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcchh---hhcchhhHHHHhC-ccHHHHHhHH
Confidence 2223333333333332 22223455555555554444333332 3333344444544 3555666666
Q ss_pred HHHHHHhhHHHHHHhH
Q psy4658 160 VKAKLEQTLDELEDSL 175 (182)
Q Consensus 160 ~k~Kle~~l~dlE~~L 175 (182)
+-.+=..+|-+|-..|
T Consensus 261 ~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 261 ILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHhccHHHHHHHHHh
Confidence 6667777778777665
No 74
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=79.35 E-value=42 Score=29.21 Aligned_cols=134 Identities=19% Similarity=0.252 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh----
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---- 101 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---- 101 (182)
++.+..+-..+..+-....+.......+..+...+..++..++..+......-.-.|.-|..|......+-.....
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~e 100 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRARE 100 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777777766666666666666666665554432221
Q ss_pred -hhhh----hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy4658 102 -DQDK----ATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK 159 (182)
Q Consensus 102 -e~EK----~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K 159 (182)
+..+ .....-+..++..+....+...++..+-..|.+.+..+.+....-|.....+.+
T Consensus 101 ee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k 163 (309)
T PF09728_consen 101 EEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLK 163 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0001 112222444444444444455555555555555555555555544444444433
No 75
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=78.93 E-value=15 Score=24.73 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=17.1
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 110 HQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 110 ~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l 147 (182)
..|..|+..++.++++|..|+...-.++..+..+...+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554444444444444333333
No 76
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.95 E-value=41 Score=28.39 Aligned_cols=78 Identities=28% Similarity=0.351 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhH-HHHHHHHHH
Q psy4658 55 ALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQD-ELINKLNKE 132 (182)
Q Consensus 55 ~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~-e~i~KL~kE 132 (182)
+++..+..++..|...|..-...+.+..++..+|...+..|+..+.- .-+--.+..++..|...+...+ ..|+++.++
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~e 221 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKE 221 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 33333444444444444444444445555556666666666655532 0011122223333443333322 366666653
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.36 E-value=28 Score=26.18 Aligned_cols=63 Identities=32% Similarity=0.464 Sum_probs=42.6
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
...||.++.++..+.+.++.+..++..+.+.+-.++.. -+......+....|...+.+|+.++
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~----~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE----NEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888999999999988888877666554443 3334444455556666666666554
No 78
>KOG0243|consensus
Probab=77.15 E-value=89 Score=31.81 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4658 27 LRQQKLEEKVAQTEA---------SLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLET 97 (182)
Q Consensus 27 eEl~~~eeel~~lke---------~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~ 97 (182)
.|+..+..++..+++ .+...+.+++.+..++.++..+...+..++..-++.+....+.+..|...+..++.
T Consensus 411 ~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~ 490 (1041)
T KOG0243|consen 411 EEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKS 490 (1041)
T ss_pred HHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444443 23334455666666666666666666666666666666666666666666666666
Q ss_pred HHhh
Q psy4658 98 QLAA 101 (182)
Q Consensus 98 ~l~e 101 (182)
.+..
T Consensus 491 ~L~~ 494 (1041)
T KOG0243|consen 491 KLQN 494 (1041)
T ss_pred HHHH
Confidence 6544
No 79
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=76.16 E-value=27 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=14.1
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE 145 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~ 145 (182)
+..+.+.+..++..|..+.+....++..+..+..
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333333
No 80
>KOG0804|consensus
Probab=73.63 E-value=76 Score=29.35 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4658 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK 75 (182)
Q Consensus 28 El~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~ 75 (182)
.+..+-.+...++-...-.++.++-++.++.++....++++.++..++
T Consensus 355 ~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 355 YYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555556666666666666666666666666555
No 81
>PRK00736 hypothetical protein; Provisional
Probab=73.62 E-value=25 Score=23.70 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=16.7
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy4658 109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQ 141 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~ 141 (182)
+..|..|+..++.++++|..|+...-.++..+.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~ 36 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVE 36 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444443333
No 82
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.19 E-value=53 Score=27.34 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQ 103 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~ 103 (182)
.+-.|..++.++.+++..+++..+..+.++.++..+......+..+-..-..... |+-.......+..|+..+.. ..
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999999999999999998888888766544322222 55555666666666666643 22
Q ss_pred hhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHH
Q psy4658 104 DKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136 (182)
Q Consensus 104 EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~l 136 (182)
.-......+..|...+..++..|..+...+..+
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333344445555555555555554444443
No 83
>KOG3478|consensus
Probab=72.97 E-value=37 Score=25.43 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=14.9
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEK 133 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEK 133 (182)
+..+...+..++.++...+.+|...+++-
T Consensus 71 r~nV~kRlefI~~Eikr~e~~i~d~q~e~ 99 (120)
T KOG3478|consen 71 RTNVGKRLEFISKEIKRLENQIRDSQEEF 99 (120)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544433
No 84
>KOG0971|consensus
Probab=72.09 E-value=1.2e+02 Score=30.82 Aligned_cols=124 Identities=16% Similarity=0.252 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH---HHHHHHHhhhhhhhhHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAK-----------------LLEEKT---TLLKNLEGEKSGLSSIQER 84 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~-----------------L~~EK~---~L~~qLq~E~~~l~e~Ee~ 84 (182)
.-+||..+..|+..++-.-++-..+...+|..+.. |..-+- +=..+|+.+...+..+++.
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~ 480 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEM 480 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777766665544333333333333322222 222111 2233556677777788888
Q ss_pred HHHHHHHHHHHHHHHhhhhh-----hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 85 AAKLAAQKADLETQLAADQD-----KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQ 148 (182)
Q Consensus 85 ~~~L~~~K~eLE~~l~ee~E-----K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~ 148 (182)
-+.|+....++|..+.++.+ ++.+...++.-.+-+...+-+|-|+.--..+|++.++.+.+.-.
T Consensus 481 ~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 481 NEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999888877444 44566667777777777788888887777777777777766433
No 85
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.57 E-value=58 Score=27.04 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAK-LLEEKTTLLKNLEGE-KSGLSSIQERAAKLAAQKADLETQLAAD 102 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~-L~~EK~~L~~qLq~E-~~~l~e~Ee~~~~L~~~K~eLE~~l~ee 102 (182)
-+.-+..+.+.+..|...+..+..+|.+....+.. +....+.+...++.. ..........+..|..+-..|+..|.++
T Consensus 32 ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee 111 (247)
T PF06705_consen 32 EEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEE 111 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888999999999999999888766654 556677788777765 3444455777778888888888877662
Q ss_pred hh--hhhhHHhhhhhHHHHHh
Q psy4658 103 QD--KATKDHQIRNLNDEIAH 121 (182)
Q Consensus 103 ~E--K~~~e~kik~l~~el~~ 121 (182)
.. ....++....|..++..
T Consensus 112 ~~~r~~~ie~~~~~l~~~l~~ 132 (247)
T PF06705_consen 112 KEERPQDIEELNQELVRELNE 132 (247)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 22 22334444444444444
No 86
>PRK04325 hypothetical protein; Provisional
Probab=70.96 E-value=31 Score=23.64 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=15.0
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4658 110 HQIRNLNDEIAHQDELINKLNKEKKQAGEVT 140 (182)
Q Consensus 110 ~kik~l~~el~~~~e~i~KL~kEKk~lee~~ 140 (182)
..|..|+..++.++++|..|+...-.++..+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I 39 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTL 39 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444444333
No 87
>PRK00295 hypothetical protein; Provisional
Probab=70.94 E-value=29 Score=23.36 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4658 109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKT 143 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~ 143 (182)
+..|..|+..++.++++|..|+...-.++..+..+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L 38 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERL 38 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555554444433333
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.67 E-value=53 Score=26.27 Aligned_cols=71 Identities=28% Similarity=0.383 Sum_probs=43.7
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~ 177 (182)
.....+..+..++..+...|..+.-+.+...-.++.+.+.+.+-.=..+.+.....+|+..=.+|=+++-.
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444666666666666666666666666666666666666666666666666666666666666555543
No 89
>KOG0804|consensus
Probab=70.20 E-value=92 Score=28.83 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=37.9
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH----HHHHHHhhHHHHHHhH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK----VKAKLEQTLDELEDSL 175 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K----~k~Kle~~l~dlE~~L 175 (182)
.+.++..+.+++..+.++.++++...|.+.-+....+.=-.+..-+.. ...-.+-+|.||++.|
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777788888888777777777666654444443332 2333445555565544
No 90
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.43 E-value=1.2e+02 Score=29.91 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
.........+.+.+...+.....++..+.........+..+|+.-...+.+..-.+..+..++..++.++..
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~ 656 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKA 656 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666666666666666666666666665666666666666666666666665554
No 91
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=47 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=17.1
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l 147 (182)
+.+.-+..|.+....++-.|.-|.+.-+.+++++..+.+.+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444333
No 92
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=68.84 E-value=1.3e+02 Score=29.84 Aligned_cols=112 Identities=16% Similarity=0.247 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---hhhhhh-----
Q psy4658 36 VAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---DQDKAT----- 107 (182)
Q Consensus 36 l~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---e~EK~~----- 107 (182)
+..++-.|.+.....-.+..++..+...-.++..-+..-++.+...+..++.|...-..|-..+.. ...|.+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555666666666666666666666677777777776666666555543 111111
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l 147 (182)
+..-...+..+|..+.|.+.+.......++..+..+.+.|
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233344444444544444444444444444444444
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.74 E-value=79 Score=27.47 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG-EKSGLSSIQERAAKLAAQKADLETQLAADQ 103 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~-E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~ 103 (182)
.+..+..+..+...+...+.....-+..+...+..|..+...|...... +...-.+.+.-+..|.....+++.
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~------ 227 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA------ 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH------
Confidence 4455666666677777777777677777777777777776666554332 122222233333333333333332
Q ss_pred hhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 104 DKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTA 144 (182)
Q Consensus 104 EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~ 144 (182)
....+..++.++......|..+...+..+...++++.
T Consensus 228 ----~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 228 ----KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334444444455555555555444444444433
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.53 E-value=63 Score=26.25 Aligned_cols=69 Identities=14% Similarity=0.291 Sum_probs=50.3
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
......++..++..+...+..|..|.+ .++-....+.-++..+..|+..+..-..-+...|..|...|.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek---~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEK---QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777777777777765 455556667777888888888888888888888888877764
No 95
>KOG0996|consensus
Probab=68.15 E-value=1.6e+02 Score=30.65 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy4658 35 KVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI 81 (182)
Q Consensus 35 el~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~ 81 (182)
.+..++..+..-+...-.+++.+..+.+....|..+++...-...++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~ 431 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSEL 431 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33344444444444444444444445555555555555444333333
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.70 E-value=58 Score=25.58 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 35 KVAQTEASLAREEKARKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 35 el~~lke~l~k~e~~rkelE~k~~~L~~EK~~L 67 (182)
++......+.....+..+++.....+..+...+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333333333333333
No 97
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.38 E-value=1.3e+02 Score=29.62 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-h
Q psy4658 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-D 102 (182)
Q Consensus 24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e 102 (182)
...+++..++.+...+...+.+.....+.+..++.........|..+|..-.+....++.........+..|+..+.+ +
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e 672 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 456777788877777777777777777777777777777777788888777777777777777777777777766654 3
Q ss_pred hhhhhhHHhhhhhHHHHH
Q psy4658 103 QDKATKDHQIRNLNDEIA 120 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~ 120 (182)
.+-...-.+|..|+.+|.
T Consensus 673 ~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555543
No 98
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.68 E-value=38 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=15.9
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4658 109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVT 140 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~ 140 (182)
+..|-.|+..++.++++|..|+...-.++..+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I 38 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEM 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444333
No 99
>KOG4673|consensus
Probab=66.68 E-value=1.4e+02 Score=29.45 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~ 62 (182)
.-++.+...++.-|...+..-++.....+....-|..
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee 381 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEE 381 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888777777666655554444
No 100
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=66.20 E-value=45 Score=23.78 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHH
Q psy4658 56 LNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLN 130 (182)
Q Consensus 56 k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~ 130 (182)
.++.+......+..++..-...+...+++..+|..-+..-..++-+ ...+-+..+.++.|...+.-..+.|..|.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4556666666666666666667777777777777766665555543 45555666666666666665555555553
No 101
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=65.98 E-value=64 Score=25.42 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH----HHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHH
Q psy4658 56 LNAKLLEEKTTLLKNLEGEKSGLSSIQERAA----KLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLN 130 (182)
Q Consensus 56 k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~----~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~ 130 (182)
....|..+...|..+...+.....-++..+. .+...+.+|..+|.. +.+...+..+++++.+....+.+.-..+.
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~ 130 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Confidence 3334444444444444444444333333322 222333344444433 33334444455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy4658 131 KEKKQAGEVTQKTAEELQAA 150 (182)
Q Consensus 131 kEKk~lee~~~~~~~~l~~E 150 (182)
++-..+.++..++.-.+..-
T Consensus 131 ~e~~~l~er~~e~l~~~~e~ 150 (158)
T PF09744_consen 131 KEYNRLHERERELLRKLKEH 150 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665555443
No 102
>KOG0976|consensus
Probab=65.43 E-value=1.6e+02 Score=29.68 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy4658 37 AQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQE 83 (182)
Q Consensus 37 ~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee 83 (182)
..+.+.+..-+.....|+-+...+..++..|+...++-++.+-+.+-
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~et 141 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEI 141 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555556666666666666666666665555544433
No 103
>PRK00846 hypothetical protein; Provisional
Probab=65.04 E-value=44 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=21.1
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEE 146 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~ 146 (182)
.+..|..|+..++.++++|..|+...-.++..+..+...
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~q 49 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAEL 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666665555544444444333
No 104
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=64.79 E-value=1.4e+02 Score=29.10 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHhh--------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy4658 84 RAAKLAAQKADLETQLAA--------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVN 155 (182)
Q Consensus 84 ~~~~L~~~K~eLE~~l~e--------e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~ 155 (182)
-+..+.....+++..+.. +.+-...+.+++-+...+..+.-+|..-++-...|+..+.-+--...++..+++
T Consensus 553 ~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~ 632 (786)
T PF05483_consen 553 VKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSN 632 (786)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 334445555666666666666666666666666677777777777777777777
Q ss_pred hHHHHHHHHHhhHHHHHH
Q psy4658 156 HLNKVKAKLEQTLDELED 173 (182)
Q Consensus 156 ~l~K~k~Kle~~l~dlE~ 173 (182)
.+....++|+-.++.+--
T Consensus 633 ~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 633 VYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 776666666665555443
No 105
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.18 E-value=40 Score=22.41 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 67 L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
|+..|++|.-.-..+.+........-..++.++.
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLq 35 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQ 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555566666664
No 106
>KOG0933|consensus
Probab=64.09 E-value=1.8e+02 Score=29.84 Aligned_cols=89 Identities=19% Similarity=0.292 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy4658 60 LLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGE 138 (182)
Q Consensus 60 L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee 138 (182)
+..+.+.+...+++....+-..+..+.+|.---.+|+..+.- +..-+..+..+..|..++..+.-.+.+...+.+..+.
T Consensus 792 l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 792 LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 444444444444444444444444444444444444443322 2333445555666666666666666665555555555
Q ss_pred HHHHHHHHHH
Q psy4658 139 VTQKTAEELQ 148 (182)
Q Consensus 139 ~~~~~~~~l~ 148 (182)
.+......+.
T Consensus 872 el~~~k~k~~ 881 (1174)
T KOG0933|consen 872 ELKDQKAKQR 881 (1174)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=64.01 E-value=78 Score=25.72 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhhhhhhHHHHHHHHHHHH
Q psy4658 23 QILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLK----------NLEGEKSGLSSIQERAAKLAAQK 92 (182)
Q Consensus 23 a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~----------qLq~E~~~l~e~Ee~~~~L~~~K 92 (182)
...+..|.....+-..+.+-|.+....+.+|...+..+...+..|.. ++..-.-.....+.++..+...+
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888888888888888887777766665432 22222223333355555555555
Q ss_pred HHHHHHHh
Q psy4658 93 ADLETQLA 100 (182)
Q Consensus 93 ~eLE~~l~ 100 (182)
.+|...+.
T Consensus 124 deL~~kf~ 131 (201)
T PF13851_consen 124 DELYRKFE 131 (201)
T ss_pred HHHHHHHH
Confidence 55555443
No 108
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.71 E-value=43 Score=22.26 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 25 LELRQQK---LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 25 ~eeEl~~---~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
.+.|+.+ ..++|.+++...-..+.+.++-+.++..|..+...|..++..
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 467888888888888888888888888898888888777643
No 109
>PRK04406 hypothetical protein; Provisional
Probab=62.44 E-value=48 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=19.5
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTA 144 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~ 144 (182)
.+..|..|+..++.++++|..|+...-.++..+..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655555444443333
No 110
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=61.88 E-value=1.4e+02 Score=27.87 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------------hhhh
Q psy4658 41 ASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---------------DQDK 105 (182)
Q Consensus 41 e~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---------------e~EK 105 (182)
+-+.+-.....+|-+..-.++-|||++...|+.-++.+++..-....-...|.-|--+++- -..|
T Consensus 362 DiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK 441 (527)
T PF15066_consen 362 DIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQK 441 (527)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3344444445555444455777888888888888888888876666555556555555543 1223
Q ss_pred hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 106 ATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE 145 (182)
Q Consensus 106 ~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~ 145 (182)
...-+++-.+..-+..-++.|.+|+..|..++....-.++
T Consensus 442 nksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 442 NKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555666666555555544433333
No 111
>KOG4674|consensus
Probab=61.18 E-value=2.5e+02 Score=30.59 Aligned_cols=96 Identities=19% Similarity=0.302 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh---------------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHH----HHHHHHH
Q psy4658 79 SSIQERAAKLAAQKADLETQLAA---------------DQDKATKDHQIRNLNDEIAHQDELINKLNKE----KKQAGEV 139 (182)
Q Consensus 79 ~e~Ee~~~~L~~~K~eLE~~l~e---------------e~EK~~~e~kik~l~~el~~~~e~i~KL~kE----Kk~lee~ 139 (182)
...-+.|..+.....+++..+.+ ..++-.+.....-|..++..-.+.+..+.++ .-.+...
T Consensus 146 ~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~ 225 (1822)
T KOG4674|consen 146 KDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEK 225 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33445555555555566555554 4556666666666777777766666666666 5666666
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 140 ~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
+..+...+.....+.+.|......|...|.++-..
T Consensus 226 L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ 260 (1822)
T KOG4674|consen 226 LSDLKESLAELQEKNKSLKQQNEELSKKIESLNLE 260 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766666666655555443
No 112
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.27 E-value=1.2e+02 Score=26.44 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=47.1
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---hhh--------hHHHHHHHHHhhHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED---KVN--------HLNKVKAKLEQTLDELED 173 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~---k~~--------~l~K~k~Kle~~l~dlE~ 173 (182)
-+..+.+|-.+++.+.....+|.+|+.+.+.+...+.........-.. .++ .+++.........+||.+
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~e 169 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQE 169 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHH
Confidence 355677888999999999999999999988887655544444332221 122 223333444566677776
Q ss_pred hHHHH
Q psy4658 174 SLERE 178 (182)
Q Consensus 174 ~Le~E 178 (182)
.+..|
T Consensus 170 kynke 174 (307)
T PF10481_consen 170 KYNKE 174 (307)
T ss_pred HHHHH
Confidence 66554
No 113
>KOG0978|consensus
Probab=60.04 E-value=1.8e+02 Score=28.49 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=37.9
Q ss_pred hhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 104 DKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 104 EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
++..++.++-.+......+...|.++...-+.+....+.+...+-..........+....+-+.+++|...++
T Consensus 504 ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e 576 (698)
T KOG0978|consen 504 EKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELE 576 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444555554445555555555555555555555566666666565665555443
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.68 E-value=48 Score=25.79 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=13.3
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEE 146 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~ 146 (182)
..+..++..+.+.+..+..+.+.+...+..+...
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333334444444444444444333333333
No 115
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.50 E-value=69 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=8.8
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHH
Q psy4658 114 NLNDEIAHQDELINKLNKEKKQA 136 (182)
Q Consensus 114 ~l~~el~~~~e~i~KL~kEKk~l 136 (182)
.+++.+..++..+.++.+....+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l 89 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDL 89 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 116
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=57.05 E-value=76 Score=23.34 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=14.2
Q ss_pred HHhhhhhHHHHH--hhHHHHHHHHHHHHHHHHHHHHH
Q psy4658 109 DHQIRNLNDEIA--HQDELINKLNKEKKQAGEVTQKT 143 (182)
Q Consensus 109 e~kik~l~~el~--~~~e~i~KL~kEKk~lee~~~~~ 143 (182)
.+.+.+.+..+. .+.++|.+|......+.+.+..+
T Consensus 36 ~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel 72 (102)
T PF01519_consen 36 NQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKEL 72 (102)
T ss_dssp TTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444 44444444444444444443333
No 117
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=56.68 E-value=51 Score=27.37 Aligned_cols=48 Identities=27% Similarity=0.255 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNL 71 (182)
Q Consensus 24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qL 71 (182)
...+|++..++++..|.+-+.+.-.+|.|..+++.+|.-++..++.+.
T Consensus 23 ~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~ 70 (214)
T PF07795_consen 23 EANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQ 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 477999999999999999999999999999999999998887666544
No 118
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=56.54 E-value=75 Score=23.13 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 42 SLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK-SGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 42 ~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~-~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
.|..+...|..++.....+..|.-+|...|-.+. ..++++--.+..+...-..|+..+.+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e 62 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888899999999999999999996554 44455544566666666677777765
No 119
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=56.39 E-value=21 Score=34.49 Aligned_cols=67 Identities=30% Similarity=0.473 Sum_probs=25.0
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHH
Q psy4658 111 QIRNLNDEIAHQDELINKLNKEKKQAGEVTQ-------KTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177 (182)
Q Consensus 111 kik~l~~el~~~~e~i~KL~kEKk~lee~~~-------~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~ 177 (182)
.+..+...+....+.+..+..+...+..... .+...+..-..++..|..-..+|...+..|+..|++
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555454444444444433322211 123344445557778888888888888888888765
No 120
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.61 E-value=1.2e+02 Score=25.33 Aligned_cols=103 Identities=18% Similarity=0.334 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------hhhhhhhHHhhhhhHHH
Q psy4658 47 EKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--------DQDKATKDHQIRNLNDE 118 (182)
Q Consensus 47 e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--------e~EK~~~e~kik~l~~e 118 (182)
+..+.+|+.++.++..+-..-...|..-.+.....++.+..+......|+....+ .........--..|..+
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444444444444444444444433322 11122222223346666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 119 IAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 119 l~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
+......|..|..+...-+.....+...+..
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555555555443
No 121
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=55.40 E-value=2.2e+02 Score=28.18 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLL 61 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~ 61 (182)
..+|+.....++.++++.+...+.....|..++..|.
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544443333
No 122
>KOG0976|consensus
Probab=54.26 E-value=2.5e+02 Score=28.37 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 47 EKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 47 e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
+..++-++..+.++..++.+|.-.|-.-+-.+.-..+.+.-|.+....++..+
T Consensus 315 eqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dv 367 (1265)
T KOG0976|consen 315 EQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDV 367 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhH
Confidence 45556677777777788888776665555555455555555555555554444
No 123
>PRK02119 hypothetical protein; Provisional
Probab=54.13 E-value=68 Score=21.88 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=10.9
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHH
Q psy4658 111 QIRNLNDEIAHQDELINKLNKEKKQ 135 (182)
Q Consensus 111 kik~l~~el~~~~e~i~KL~kEKk~ 135 (182)
.+..|+..++.++++|..|+...-.
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~ 34 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIE 34 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 124
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.94 E-value=68 Score=21.89 Aligned_cols=61 Identities=30% Similarity=0.303 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q psy4658 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKL 88 (182)
Q Consensus 28 El~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L 88 (182)
.+..++..+..+=+..+--..+..+|.+++..|..+...|....+.-+.......++...|
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555666666666666555555555555554444444444444
No 125
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=53.59 E-value=51 Score=25.24 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658 154 VNHLNKVKAKLEQTLDELEDSLEREKK 180 (182)
Q Consensus 154 ~~~l~K~k~Kle~~l~dlE~~Le~Ekk 180 (182)
+.+|.+-|.-|+.++-+++-+|++|.|
T Consensus 60 lkqLEkeK~~Le~qlk~~e~rLeQEsK 86 (129)
T PF15372_consen 60 LKQLEKEKRSLENQLKDYEWRLEQESK 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.77 E-value=1.3e+02 Score=24.59 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4658 29 QQKLEEKVAQTEASLAR 45 (182)
Q Consensus 29 l~~~eeel~~lke~l~k 45 (182)
+..++.++..++.+++.
T Consensus 95 lp~le~el~~l~~~l~~ 111 (206)
T PRK10884 95 VPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 127
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=51.66 E-value=1.1e+02 Score=23.64 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHH
Q psy4658 61 LEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKL 129 (182)
Q Consensus 61 ~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL 129 (182)
..++..+..+...-+..+...++....+.....+|+..+.. -.+|..+.+.+...++.+..++-.++.+
T Consensus 37 q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 37 QENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333333333333444444444444444444555544433 2334444444444444444444433333
No 128
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=51.15 E-value=1.1e+02 Score=23.43 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHH
Q psy4658 54 EALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA-QKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNK 131 (182)
Q Consensus 54 E~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~-~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~k 131 (182)
-+.+.+|...+-.|...+..-..+..+.-.-.-.... .-..|..-|+- +.+|.+++++++.+.-.+.+-.-.+.+.+-
T Consensus 14 ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~nd 93 (129)
T PF15372_consen 14 LELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKAND 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3556677777778888887776666554321111111 11223322322 788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy4658 132 EKKQAGEVTQKTAE 145 (182)
Q Consensus 132 EKk~lee~~~~~~~ 145 (182)
+++..-..+.++..
T Consensus 94 eRr~ylaEi~~~s~ 107 (129)
T PF15372_consen 94 ERRQYLAEISQTSA 107 (129)
T ss_pred HHHHHHHHHHhhhh
Confidence 99988877777764
No 129
>KOG1029|consensus
Probab=49.26 E-value=2.9e+02 Score=27.74 Aligned_cols=35 Identities=11% Similarity=0.308 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------hhhhhhhHHhhhhhH
Q psy4658 82 QERAAKLAAQKADLETQLAA--------DQDKATKDHQIRNLN 116 (182)
Q Consensus 82 Ee~~~~L~~~K~eLE~~l~e--------e~EK~~~e~kik~l~ 116 (182)
--.|+..+....+|-..|++ --|++.+.++++..+
T Consensus 478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 34455555555566666655 234555555555544
No 130
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=49.00 E-value=1.9e+02 Score=25.42 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHH
Q psy4658 55 ALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134 (182)
Q Consensus 55 ~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk 134 (182)
..+.........|..-|..-.+.+..-.+...+|..+-.+|+..++. .++| ...|...+....+....|..+..
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~----~~~E--nEeL~q~L~~ske~Q~~L~aEL~ 279 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ----LAAE--NEELQQHLQASKESQRQLQAELQ 279 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666677777777777777777777777777777776643 1222 13355556666777777888888
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhHH
Q psy4658 135 QAGEVTQKTAEELQAAEDKVNHLN 158 (182)
Q Consensus 135 ~lee~~~~~~~~l~~Ee~k~~~l~ 158 (182)
.++++..+...-|++-.+-.+.+.
T Consensus 280 elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 280 ELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888887777777666555443
No 131
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.77 E-value=1.9e+02 Score=25.21 Aligned_cols=90 Identities=23% Similarity=0.398 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhh-
Q psy4658 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKA- 106 (182)
Q Consensus 29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~- 106 (182)
+..+...+..+.+++.+. ==.+++|-.||+.|.=|+..-.+.+-+.++.+..+...- ..++.+ +..|+
T Consensus 79 ~r~lk~~l~evEekyrkA-------Mv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~~ 148 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKA-------MVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 334444444444444433 345677888888888888888888888888776665543 344444 33333
Q ss_pred --hhHHhhhhhHHHHHhhHHHHHH
Q psy4658 107 --TKDHQIRNLNDEIAHQDELINK 128 (182)
Q Consensus 107 --~~e~kik~l~~el~~~~e~i~K 128 (182)
.+...+..|.+++...++.|.+
T Consensus 149 ~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 149 HDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777776666655
No 132
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=47.18 E-value=1.2e+02 Score=22.71 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHH
Q psy4658 130 NKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDE 170 (182)
Q Consensus 130 ~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~d 170 (182)
......|.+.-..+...+..-..++..|.....-|..+|+.
T Consensus 90 ~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 90 EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444555555555555555555555555555555543
No 133
>KOG2129|consensus
Probab=46.85 E-value=2.4e+02 Score=26.11 Aligned_cols=118 Identities=22% Similarity=0.290 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHHHhh-----------------hhhhh-hhHHhhhhhHHH
Q psy4658 58 AKLLEEKTTLLKNLEGEKSGLSSI-QERAAKLAAQKADLETQLAA-----------------DQDKA-TKDHQIRNLNDE 118 (182)
Q Consensus 58 ~~L~~EK~~L~~qLq~E~~~l~e~-Ee~~~~L~~~K~eLE~~l~e-----------------e~EK~-~~e~kik~l~~e 118 (182)
.+|.-+.-+|+..|++|++.+.+. =-+.+.|...|..|-.++.. ..+-. +.-.-|+.|+.+
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~E 261 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAE 261 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHH
Confidence 567777778888888887776654 56677778888888887755 11111 111123333333
Q ss_pred H-------H----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 119 I-------A----HQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 119 l-------~----~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
+ . +..+.+..+..|.++..+.+..+...|+.+=++-..|+..-..-+..+.-.|+++
T Consensus 262 veRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 262 VERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEERY 329 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3 2 2446677788899999999999999999998888888887777666666666554
No 134
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=45.86 E-value=1.7e+02 Score=24.17 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEV-EALNAKLLEEKTTLLKNLEGEKSGLSSIQERAA 86 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkel-E~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~ 86 (182)
.-+..+.+.|..+...+..+...|+.. +.++..+..-...|...|+++.-.-.++.....
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq 65 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQ 65 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888887775555544 456666777778888888887766666554433
No 135
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.81 E-value=2.7e+02 Score=26.46 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhHhhhhHHHHHHHHHhhHHHHH
Q psy4658 126 INKLNKEKKQAGEVTQKTAEELQA--AEDKVNHLNKVKAKLEQTLDELE 172 (182)
Q Consensus 126 i~KL~kEKk~lee~~~~~~~~l~~--Ee~k~~~l~K~k~Kle~~l~dlE 172 (182)
+..+..+...+++.+..+...+.. .++.++.+......++..++.+.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~ 441 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSE 441 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566555555543 22344444444444444444443
No 136
>KOG0018|consensus
Probab=45.49 E-value=3.6e+02 Score=27.80 Aligned_cols=145 Identities=19% Similarity=0.327 Sum_probs=0.0
Q ss_pred hcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Q psy4658 12 KGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKAR---------------------KEVEALNAKLLEEKTTLLKN 70 (182)
Q Consensus 12 kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~r---------------------kelE~k~~~L~~EK~~L~~q 70 (182)
...|-+- . ....|...+..++.|.+++.+.+... .+...+...+...+..|..+
T Consensus 722 ~~~p~i~--~---i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~ 796 (1141)
T KOG0018|consen 722 EFGPEIS--E---IKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQ 796 (1141)
T ss_pred hhCchHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 71 LEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 71 Lq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
|+-++. .+...+..++...-.+++..+.. .+...+....+..+ .++..-+ ..........+..
T Consensus 797 l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~-------------k~~~~~~~~e~~e 860 (1141)
T KOG0018|consen 797 LDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKN-------------KSKFEKKEDEINE 860 (1141)
T ss_pred hhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHH-------------HHHHHHHHHHHHH
Q ss_pred hhHhhhhHHHHHHHHHhhHHHHHHhHHH
Q psy4658 150 AEDKVNHLNKVKAKLEQTLDELEDSLER 177 (182)
Q Consensus 150 Ee~k~~~l~K~k~Kle~~l~dlE~~Le~ 177 (182)
-......+.+-..+|...|.-++..+++
T Consensus 861 ~~k~~~~~~~~~tkl~~~i~~~es~ie~ 888 (1141)
T KOG0018|consen 861 VKKILRRLVKELTKLDKEITSIESKIER 888 (1141)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHH
No 137
>KOG0243|consensus
Probab=45.25 E-value=3.6e+02 Score=27.68 Aligned_cols=95 Identities=25% Similarity=0.219 Sum_probs=60.3
Q ss_pred hHhhhHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q psy4658 3 DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQ 82 (182)
Q Consensus 3 ~~~~~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~E 82 (182)
||.||+.+.-|= +.--+....+.|...+.+.+..+...+.-.......+.+.+......+..|...+..-...+.+..
T Consensus 419 dl~AaReKnGvy--isee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~ 496 (1041)
T KOG0243|consen 419 DLAAAREKNGVY--ISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN 496 (1041)
T ss_pred HHHHhHhhCceE--echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666554331 111221225678888999999999999999999999999998666666666666555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4658 83 ERAAKLAAQKADLETQL 99 (182)
Q Consensus 83 e~~~~L~~~K~eLE~~l 99 (182)
..+..+..--.++...|
T Consensus 497 ~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 497 KELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555554444444443
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.19 E-value=2.1e+02 Score=24.96 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4658 49 ARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKAD 94 (182)
Q Consensus 49 ~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~e 94 (182)
-...|.+.+.-+..+.+.|...++.-.+.+...-++...|...-..
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555444444444444443333
No 139
>KOG0963|consensus
Probab=44.66 E-value=3e+02 Score=26.56 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=48.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHh----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4658 67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQ----IRNLNDEIAHQDELINKLNKEKKQAGEVTQK 142 (182)
Q Consensus 67 L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~k----ik~l~~el~~~~e~i~KL~kEKk~lee~~~~ 142 (182)
...++.--...++++.-+.-.|......|..++.. ..++.+.. +......+.+.+.-|..|+.+..+++..+..
T Consensus 233 k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~--~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~ 310 (629)
T KOG0963|consen 233 KAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK--ANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVE 310 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556666677777777777777776633 22222222 4455556667888888888888888776665
Q ss_pred HHHH
Q psy4658 143 TAEE 146 (182)
Q Consensus 143 ~~~~ 146 (182)
....
T Consensus 311 e~e~ 314 (629)
T KOG0963|consen 311 EREK 314 (629)
T ss_pred HHHH
Confidence 5544
No 140
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.60 E-value=1.1e+02 Score=21.36 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=28.0
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l 147 (182)
+.+.+.=+..|+..+..++..|.++.+..+.+......+...|
T Consensus 57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 57 KQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777777777777777777777766666655544
No 141
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.29 E-value=2e+02 Score=24.41 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
-+.+.+..++++|....+...+|=..+..+..+.+.++..|..-....+-.++++.+|--.--.|...+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 344445555555555555555555555555555555555555544444444554444443333333333
No 142
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.14 E-value=2.3e+02 Score=25.21 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHhhhhhHH--HHHhhHHHHHHHHHHHH
Q psy4658 62 EEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-----DQDKATKDHQIRNLND--EIAHQDELINKLNKEKK 134 (182)
Q Consensus 62 ~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-----e~EK~~~e~kik~l~~--el~~~~e~i~KL~kEKk 134 (182)
.....+..+..+-++.++++.+.+..+...-.++...+.. +.=|+..+.+-.++++ .+..+...+.+|..|.+
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333444445555666666666666666666666655544 3335566666555554 34467788888888888
Q ss_pred HHHHHH
Q psy4658 135 QAGEVT 140 (182)
Q Consensus 135 ~lee~~ 140 (182)
.+.-++
T Consensus 346 qMdvrI 351 (359)
T PF10498_consen 346 QMDVRI 351 (359)
T ss_pred Hhhhhh
Confidence 776554
No 143
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=43.92 E-value=1.7e+02 Score=23.66 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
....+++.-+++.+.+.......++.++.....+...+..+++.
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444444444444444444444443
No 144
>KOG0239|consensus
Probab=43.88 E-value=3.1e+02 Score=26.61 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=32.6
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH---HHHHHHHhhHHHHHHhH
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLN---KVKAKLEQTLDELEDSL 175 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~---K~k~Kle~~l~dlE~~L 175 (182)
..+...+..+.+.+..+..+-...-..+..+..+|.....-...-. ..+.+|..+|.||.++.
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3333334444444444444444333333444444444444444333 67778888888887653
No 145
>KOG0946|consensus
Probab=43.04 E-value=3.6e+02 Score=27.08 Aligned_cols=145 Identities=21% Similarity=0.262 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh-hhhhhHH
Q psy4658 32 LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQ-DKATKDH 110 (182)
Q Consensus 32 ~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~-EK~~~e~ 110 (182)
..+.+..+..++.....+..++...+.++.+.+..+.....+-.+++......+.-+.......+..+.+-. .-+...+
T Consensus 790 ~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~n 869 (970)
T KOG0946|consen 790 DQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNN 869 (970)
T ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhh
Confidence 334444444445555555555666666666666655555556666666666666666666666666665521 2234444
Q ss_pred hhhhhHHHHHhhHHH-----HHH---------HHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 111 QIRNLNDEIAHQDEL-----INK---------LNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 111 kik~l~~el~~~~e~-----i~K---------L~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
-|+.+.+.+..+..+ .+| ++-+.-........++--+.+-..+...|.+....|.+...+.|+...
T Consensus 870 li~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~ 949 (970)
T KOG0946|consen 870 LIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKV 949 (970)
T ss_pred HHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhh
Confidence 455555554443321 111 111222223355666667777888899999999999999888887653
No 146
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.60 E-value=1.2e+02 Score=21.31 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=21.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 114 NLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 114 ~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
.|+..|...-|+|+=|.-|...+.+.+..+....+.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666555555444
No 147
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.44 E-value=1.4e+02 Score=27.75 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLE 72 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq 72 (182)
+......++.+|..++-.+......+.+++.++..+..+...|..|+.
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666655555556677777777777777777777763
No 148
>PF15294 Leu_zip: Leucine zipper
Probab=40.82 E-value=2.4e+02 Score=24.39 Aligned_cols=42 Identities=31% Similarity=0.335 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 60 LLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 60 L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
|..|+.+|+...+.-++-+...+..|......+..|+..|.+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~ 171 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKE 171 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999987
No 149
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=40.62 E-value=1.2e+02 Score=21.39 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNAK 59 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~ 59 (182)
.....++.+++++.+....+.++|+.+...
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTE 33 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666555443
No 150
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.72 E-value=1.4e+02 Score=21.33 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=32.1
Q ss_pred hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKT 65 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~ 65 (182)
++.|..|=|.+-... .++-+..++..+..+...+.+.+.....++..+..+.....
T Consensus 46 ~~vy~~VG~vfv~~~---~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 46 AEVYKLVGNVLVKQE---KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred chHHHHhhhHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555 55556666666666665555555555555555555444433
No 151
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=39.13 E-value=1.6e+02 Score=21.84 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=13.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 67 L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
++.+|.+-...+...---...|++.+.+|+..+
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l 46 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNAL 46 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Confidence 333333333333333333344444444444444
No 152
>KOG4593|consensus
Probab=38.78 E-value=3.9e+02 Score=26.20 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=30.3
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKV 160 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~ 160 (182)
.++.+.++-.+..-+...+..+++++.+...+..+...+-.-++.++...+.-.+.
T Consensus 146 ~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~q 201 (716)
T KOG4593|consen 146 LREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQ 201 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555666666666666655555555555555544444333
No 153
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.50 E-value=3.4e+02 Score=25.48 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKAD 94 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~e 94 (182)
.+.++..+.+.+..+...+.. ....+.+..+..+......|...++.|...-.........+...-..
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~--l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKN--LELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455555555555555555532 34455556666666666666666666665555555544444443333
No 154
>KOG0979|consensus
Probab=38.22 E-value=4.6e+02 Score=26.91 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=51.1
Q ss_pred hhHhhhhcCcchhhhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy4658 6 AAKESFKGDPNAILTRKQILELRQQ-------KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGL 78 (182)
Q Consensus 6 ~~~~~~kvkPlL~~~~~a~~eeEl~-------~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l 78 (182)
-..-|+.+.|.+.-+. -..++++. .+..+++.+.+...+....+.+.......+..++..+..++...+...
T Consensus 616 k~~~f~~~~~~l~~~~-~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~ 694 (1072)
T KOG0979|consen 616 KSRNFFSVSPVLEELD-NRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRK 694 (1072)
T ss_pred hhhhhhccchHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445777888766554 22344443 355556666666666666666666666666666666655554444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy4658 79 SSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 79 ~e~Ee~~~~L~~~K~eLE~~l 99 (182)
.-+|-....|...+.++...+
T Consensus 695 ~~ie~~~~~l~~qkee~~~~~ 715 (1072)
T KOG0979|consen 695 ERIENLVVDLDRQEEEYAASE 715 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 155
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=37.85 E-value=4.8e+02 Score=26.99 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLK 69 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~ 69 (182)
++.+......+..++..+.......+..+.....+..+...+..
T Consensus 627 e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 670 (1201)
T PF12128_consen 627 EKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQ 670 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333344444433333333
No 156
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=37.27 E-value=3.5e+02 Score=25.21 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4658 20 TRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE 74 (182)
Q Consensus 20 ~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E 74 (182)
.++...+.+|....+++.++++.+.-.+..+-..-..+...-.-..+|..+|+..
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444577889999999999999999888877666655555555555666666543
No 157
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.45 E-value=2.1e+02 Score=22.35 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHhh---
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS-IQERAAKLAAQKADLETQLAA--- 101 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e-~Ee~~~~L~~~K~eLE~~l~e--- 101 (182)
..++....-.+-.++-.+.+........++--.-| .-.=|+||+-+...+.+ ++++...|...+...-..+.-
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L---~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGL---HLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555444444333211110 11124556655444433 466666666666554444433
Q ss_pred --------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhHhhhhHHHHH
Q psy4658 102 --------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV------------TQKTAEELQAAEDKVNHLNKVK 161 (182)
Q Consensus 102 --------e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~------------~~~~~~~l~~Ee~k~~~l~K~k 161 (182)
..+-......+......+....+.+..+..+...+... ...++.|...--+.+..+.+.-
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i 161 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEI 161 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 11222223333334444444444444444433333332 2344556666777777777777
Q ss_pred HHHHhhHHHHHHhH
Q psy4658 162 AKLEQTLDELEDSL 175 (182)
Q Consensus 162 ~Kle~~l~dlE~~L 175 (182)
..|...+..++..+
T Consensus 162 ~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 162 KELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777777654
No 158
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=36.24 E-value=3.5e+02 Score=24.88 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHH
Q psy4658 140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELED 173 (182)
Q Consensus 140 ~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~ 173 (182)
+..--++++.-+.+...|.-.-..|++.+..||-
T Consensus 247 iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 247 IAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555666666666553
No 159
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=36.02 E-value=1.7e+02 Score=21.22 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=49.9
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk 180 (182)
+-++......+.+.++.+.++.-.+...+.++...++....+.+.-.. .-.+...|+.++..+..+++
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~ 72 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQ 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888888888888888876655554444 45666777777777777665
No 160
>KOG4643|consensus
Probab=35.62 E-value=5.2e+02 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=14.2
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 71 LEGEKSGLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 71 Lq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
.+.....+.+......+|...+..+..++.
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~k 519 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYK 519 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555443
No 161
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.55 E-value=4.3e+02 Score=25.83 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q psy4658 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQ 82 (182)
Q Consensus 24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~E 82 (182)
.+-.++..+.++...+.+...+...+.++..+++..|.+--..+...+..-...+.++|
T Consensus 576 ~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE 634 (717)
T PF10168_consen 576 QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence 35566777777777777777777777777777777777666666666665455555554
No 162
>KOG1962|consensus
Probab=35.18 E-value=1.8e+02 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKE 52 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rke 52 (182)
+++++...+++.++++.+++.....+.
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~ 176 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEK 176 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444433
No 163
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.95 E-value=3.1e+02 Score=23.63 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 35 KVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 35 el~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
+.......+.........+.+.+.+...+...+..++-.-.+.+++++....+|.+.-..+..+|.
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555566666677777777777777777788888888888777666666663
No 164
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.20 E-value=2.3e+02 Score=21.91 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=26.5
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEE 146 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~ 146 (182)
..-.+.++..++..+..+.+.|.+++.....++...+.-...
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777777776666666554444333
No 165
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.06 E-value=2.6e+02 Score=22.46 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQ 103 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~ 103 (182)
.+--+..+++.+.+++..+....+..+.++.++..+......+..+...-. -..-++-.......+..++..+.. ..
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al--~~g~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL--AAGREDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888999999999999999999999999999888888877664432 222345555566666677766654 22
Q ss_pred hhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHH
Q psy4658 104 DKATKDHQIRNLNDEIAHQDELINKLNKEKKQAG 137 (182)
Q Consensus 104 EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~le 137 (182)
.-......+..|...+..+...|..+...+..+-
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666666666655555443
No 166
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=32.99 E-value=3.4e+02 Score=23.80 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhhhHHHH-------
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKL--------------LEEKTTLLKNLEGEKSGLSSIQER------- 84 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L--------------~~EK~~L~~qLq~E~~~l~e~Ee~------- 84 (182)
...+..+..+-.-|..+|.++...+..||..+.++ ..-+.++...++.+.+.+.-..++
T Consensus 62 ~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~ 141 (305)
T PF14915_consen 62 NGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSN 141 (305)
T ss_pred hhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHh
Confidence 34455566666667777777666666666555443 233456666666666633322222
Q ss_pred ----HHHHHHHHHH-------HHHHHhh---------------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy4658 85 ----AAKLAAQKAD-------LETQLAA---------------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGE 138 (182)
Q Consensus 85 ----~~~L~~~K~e-------LE~~l~e---------------e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee 138 (182)
...|...=.. |+..++. +.+...+..+++.++.-+..-.+.++++..--..+++
T Consensus 142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eE 221 (305)
T PF14915_consen 142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEE 221 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2222222111 2222221 4445555566666665555555666666555555555
Q ss_pred HHHHH-------HHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 139 VTQKT-------AEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 139 ~~~~~-------~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
++.++ ...|.+.-.|+.+-.|+-.-+..++.|.-..
T Consensus 222 RL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~ 264 (305)
T PF14915_consen 222 RLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKK 264 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44443 3445555556666566555555555554444
No 167
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=32.92 E-value=14 Score=35.53 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhH
Q psy4658 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHL 157 (182)
Q Consensus 123 ~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l 157 (182)
+..+..+..+...+...+..+...++.-+.+...|
T Consensus 184 e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 184 ESQIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 168
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.31 E-value=1.5e+02 Score=19.67 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=20.9
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
++-++-..++-+..+.+.+...+++...|+..+..+.+.+.+
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555444
No 169
>KOG1899|consensus
Probab=32.04 E-value=5e+02 Score=25.46 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-Hhh-hhhhhhh
Q psy4658 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQ-LAA-DQDKATK 108 (182)
Q Consensus 31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~-l~e-e~EK~~~ 108 (182)
.+...|....|.|..+--.|..||.+.-.|..|...|-..+-+-.-.-.+.|++...-..--+++-.. +.+ ..+.-..
T Consensus 150 ~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqy 229 (861)
T KOG1899|consen 150 EKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQY 229 (861)
T ss_pred HHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555566666666666666666655544332222222222222111111111111 111 3445556
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhhhHHHHHHHHHhhHHH
Q psy4658 109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA-AEDKVNHLNKVKAKLEQTLDE 170 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~-Ee~k~~~l~K~k~Kle~~l~d 170 (182)
+.+.++-.++++.+.++.+--+-+...+. ..+...+.. -+.++-.-+++|.-+++.+..
T Consensus 230 e~klkstk~e~a~L~Eq~~eK~~e~~rl~---~~lv~~~~~d~e~~~~rd~~lk~a~eslm~a 289 (861)
T KOG1899|consen 230 ETKLKSTKGEMAPLREQRSEKNDEEMRLL---RTLVQRLMADGEHKSLRDNTLKNALESLMRA 289 (861)
T ss_pred HhhcccccchhhhHHHHHhhhhhHHHHHH---HHHHHHHhhcccchhhHHHHHHHHHHHHHhh
Confidence 66666666777777776665555444443 333344443 344566666777777766543
No 170
>KOG0979|consensus
Probab=31.80 E-value=5.9e+02 Score=26.20 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=35.4
Q ss_pred hcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy4658 12 KGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQE 83 (182)
Q Consensus 12 kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee 83 (182)
+-+|++..-. -..+..+.......+++.+.+.....+.++.+...|..++..+..+...-...+.++-.
T Consensus 236 ~k~~~v~y~~---~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~ 304 (1072)
T KOG0979|consen 236 KKKKWVEYKK---HDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALA 304 (1072)
T ss_pred HhccccchHh---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 3345544444 44455555555555555555555555555555555555555555555554444444433
No 171
>PHA01750 hypothetical protein
Probab=31.79 E-value=1.4e+02 Score=20.37 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=27.8
Q ss_pred hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEV 53 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkel 53 (182)
..+|.|+|..|+-.=.--...|+..+..++..++-+....+....++
T Consensus 22 iqlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 22 IQLYLKIKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35788888876544323345677777777777765554444444443
No 172
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.78 E-value=1.6e+02 Score=26.22 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 134 KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 134 k~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
..+++++..+.+.+..-+.....+.+....+...++|||++
T Consensus 147 ~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 147 DELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444433344444445555566666666654
No 173
>KOG4593|consensus
Probab=30.69 E-value=5.3e+02 Score=25.32 Aligned_cols=77 Identities=23% Similarity=0.166 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 25 LELRQQKLEEKVA-QTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 25 ~eeEl~~~eeel~-~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
++..+...-++.. .+...+.++...+.+++.+...+..-++.+...+..-+..+...+.+..++-...+.++..+..
T Consensus 120 ~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~ 197 (716)
T KOG4593|consen 120 QEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDR 197 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444 6666667777777777777777777777777666666666666666666666666666655554
No 174
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.97 E-value=4.1e+02 Score=23.86 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=10.0
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHH
Q psy4658 111 QIRNLNDEIAHQDELINKLNKEKK 134 (182)
Q Consensus 111 kik~l~~el~~~~e~i~KL~kEKk 134 (182)
++..+.-+....++....|+.|-.
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHH
Confidence 333344444444444444444433
No 175
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=29.79 E-value=4.6e+02 Score=24.39 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4658 29 QQKLEEKVAQTEASLARE 46 (182)
Q Consensus 29 l~~~eeel~~lke~l~k~ 46 (182)
+..+..++..+++.+.-.
T Consensus 174 ve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 174 VEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 176
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.70 E-value=3e+02 Score=22.11 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=62.9
Q ss_pred hhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q psy4658 9 ESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKL 88 (182)
Q Consensus 9 ~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L 88 (182)
+|.+++-++.+. ...-+...+.=-.-+.-.+...+.....+...++........+..++..-...+...+.+...-
T Consensus 2 lf~Rl~~~~~a~----~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 2 LFKRLKTLVKAN----INELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHH----HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555443333 3333333332223333333333444444445555555555555555554444444444433222
Q ss_pred HHHH-HHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 89 AAQK-ADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEE 146 (182)
Q Consensus 89 ~~~K-~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~ 146 (182)
...- .+|=... -..+...+..+..+...+..+..++.+|......+...+.++...
T Consensus 78 l~~g~edLAr~a--l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 78 LAAGREDLAREA--LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHcCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111100 334666666777777777777777777766666666655555444
No 177
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=29.15 E-value=3.2e+02 Score=22.32 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=44.3
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
.+++-+..++.++..+...|..+++.+|..+......+..| +.+-..+......++..+..|+..+.
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~L---e~~W~~~v~kn~eie~a~~~Le~ei~ 206 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYL---EQRWKELVSKNLEIEVACEELEQEIE 206 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666788999999999999999999999887655554443 33333444444455555555554443
No 178
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=28.79 E-value=1.3e+02 Score=21.15 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHH
Q psy4658 55 ALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134 (182)
Q Consensus 55 ~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk 134 (182)
.....|.++...|+.+|+.|.+.-...+.....-... + ..--..+..+++.|=.+|+.++..|.+|....-
T Consensus 8 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~---~------~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGS---L------PSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---c------CCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888888888888776655544332210000 0 112346677788888888888888888876554
Q ss_pred HH
Q psy4658 135 QA 136 (182)
Q Consensus 135 ~l 136 (182)
.|
T Consensus 79 ~L 80 (88)
T PF14389_consen 79 SL 80 (88)
T ss_pred HH
Confidence 44
No 179
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=28.51 E-value=4.7e+02 Score=24.05 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
.-+..+..++..+.......+.+|...-......-+|+.....++.+-.-+++.+.-...++.++-..|-..|+.
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~ 155 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555666666666666666666666666666666666666655555543
No 180
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=28.06 E-value=2.7e+02 Score=21.10 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=17.5
Q ss_pred hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy4658 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQ 141 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~ 141 (182)
.|+.....+|-.|+++...++-....|.+-.+-|+-++.
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333
No 181
>PRK02119 hypothetical protein; Provisional
Probab=27.90 E-value=2e+02 Score=19.54 Aligned_cols=24 Identities=0% Similarity=-0.092 Sum_probs=8.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHH
Q psy4658 114 NLNDEIAHQDELINKLNKEKKQAG 137 (182)
Q Consensus 114 ~l~~el~~~~e~i~KL~kEKk~le 137 (182)
..++-+..+.+.+...+++...+.
T Consensus 20 ~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 20 FQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 182
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.20 E-value=4.2e+02 Score=23.07 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L 67 (182)
.+..+..+..+...|...++....-.-.+-..+..|..+.+.|
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666665554
No 183
>PRK00295 hypothetical protein; Provisional
Probab=27.15 E-value=2e+02 Score=19.24 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=22.9
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
+|-++-..++-|..+.+.+...+++...+...+..+.+.+.+
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554443
No 184
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=27.13 E-value=1.2e+02 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4658 118 EIAHQDELINKLNKEKKQAGEVTQKT 143 (182)
Q Consensus 118 el~~~~e~i~KL~kEKk~lee~~~~~ 143 (182)
.|..+.|.|++|-+||.+|+-++..|
T Consensus 72 ~IRdLNDeINkL~rEK~~WE~rI~~L 97 (255)
T PF06246_consen 72 QIRDLNDEINKLIREKRHWERRIKEL 97 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678899999999999988754
No 185
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.99 E-value=5.2e+02 Score=24.09 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy4658 82 QERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 82 Ee~~~~L~~~K~eLE~~l~e 101 (182)
+++...|...+..|...+..
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655554
No 186
>KOG0239|consensus
Probab=26.60 E-value=6e+02 Score=24.69 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=52.4
Q ss_pred hhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH---HHHHH
Q psy4658 11 FKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQ---ERAAK 87 (182)
Q Consensus 11 ~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~E---e~~~~ 87 (182)
++++|+.....+ ..+.+..+..++..++..+.........+...+.......+.+...|.....++.+.. ..+.+
T Consensus 227 ~~~~~l~~~~~~--~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~k 304 (670)
T KOG0239|consen 227 RNIKPLEGLEST--IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRK 304 (670)
T ss_pred HhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776655552 3333666666777777666666666666666666666666666666666666665555 44555
Q ss_pred HHHHHHHHHHHH
Q psy4658 88 LAAQKADLETQL 99 (182)
Q Consensus 88 L~~~K~eLE~~l 99 (182)
|-....+|-..|
T Consensus 305 L~N~i~eLkGnI 316 (670)
T KOG0239|consen 305 LHNEILELKGNI 316 (670)
T ss_pred HHHHHHHhhcCc
Confidence 555555554433
No 187
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.47 E-value=2.8e+02 Score=20.77 Aligned_cols=44 Identities=34% Similarity=0.434 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L 67 (182)
+....+..++.|+..++..+.+....|..+...++.+..+...+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999888877655
No 188
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=26.43 E-value=6.3e+02 Score=24.86 Aligned_cols=55 Identities=25% Similarity=0.304 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4658 35 KVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLE 96 (182)
Q Consensus 35 el~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE 96 (182)
|+++|+..|... +.....|.......+.+|...+..+.+..++..+|...-.-|-
T Consensus 266 EiqKL~qQL~qv-------e~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 266 EIQKLKQQLLQV-------EREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALR 320 (717)
T ss_pred HHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555544443 4444567777777788888888888888888877776644443
No 189
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.04 E-value=3.1e+02 Score=24.41 Aligned_cols=44 Identities=18% Similarity=0.387 Sum_probs=22.3
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy4658 110 HQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDK 153 (182)
Q Consensus 110 ~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k 153 (182)
..|..+++.+..+++.+..+......++..+..+.+.+.+-++.
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555554444444555555555554544
No 190
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.92 E-value=4.3e+02 Score=22.75 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=53.7
Q ss_pred hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHH
Q psy4658 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELE 172 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE 172 (182)
.++...+.++.....++....+......++.+.+..++..+...|..-+.+...+++.-.-+.+.++.+.
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666667777778888888888888888888888888888888888888888886666666665554
No 191
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.82 E-value=2.8e+02 Score=20.63 Aligned_cols=96 Identities=21% Similarity=0.336 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q psy4658 33 EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQI 112 (182)
Q Consensus 33 eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~ki 112 (182)
...+..++..+........+.+.+|..=..-.......|..-+..+.........|...-......+ ...+.+++..-
T Consensus 23 ~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l--~~~e~sw~~qk 100 (132)
T PF07926_consen 23 EEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAEL--EESEASWEEQK 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHH
Confidence 3334444444444444444444444443333444444444444444443333333333333333222 22233444444
Q ss_pred hhhHHHHHhhHHHHHHHH
Q psy4658 113 RNLNDEIAHQDELINKLN 130 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~ 130 (182)
..|+.++......|..|.
T Consensus 101 ~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 192
>PHA02414 hypothetical protein
Probab=25.43 E-value=2.8e+02 Score=20.37 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHH
Q psy4658 127 NKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177 (182)
Q Consensus 127 ~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~ 177 (182)
..|+.....|-..+-.+-.+++.-++|.+|+.=...+|+-.|+.|.+.-..
T Consensus 32 ~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~k 82 (111)
T PHA02414 32 KELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNKK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcccc
Confidence 345555566666666666778888899999999999999999999876443
No 193
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.16 E-value=3.3e+02 Score=21.17 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD 104 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E 104 (182)
..+.+..+..++.+++......-....-+-++...+..+...+...|..-...+....+...++......+...+..-.
T Consensus 54 l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~- 132 (177)
T PF13870_consen 54 LNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR- 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4566777778888888777777777777777777777777777777777777777777666666666666665554310
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE 145 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~ 145 (182)
...-....-.+-.++....+.+..+.+..+.|...+..+..
T Consensus 133 ~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 133 QQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111223334555555666666666666655555443
No 194
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=25.09 E-value=4.6e+02 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 47 EKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 47 e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
-..|.++-.....+-.+++++..-++.
T Consensus 61 r~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 61 REERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555444443
No 195
>KOG3068|consensus
Probab=24.47 E-value=1.1e+02 Score=26.11 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4658 118 EIAHQDELINKLNKEKKQAGEVTQKT 143 (182)
Q Consensus 118 el~~~~e~i~KL~kEKk~lee~~~~~ 143 (182)
.|..+.|.|++|.+++.+++-++..|
T Consensus 70 rirDLNDEiNkLlrEk~~WE~rI~el 95 (268)
T KOG3068|consen 70 RIRDLNDEINKLLREKHHWEVRIREL 95 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788999999999999988877
No 196
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=3.5e+02 Score=21.14 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHH
Q psy4658 38 QTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLND 117 (182)
Q Consensus 38 ~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~ 117 (182)
++.-.+.+.-..++..+.++..|...++.+..++..-......+. .+.+++.
T Consensus 20 ~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~----------------------------q~~nyq~ 71 (148)
T COG2882 20 EAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAA----------------------------QWQNYQQ 71 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH----------------------------HHHHHHH
Confidence 444455555556666666666666666666655554433333332 2234444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Q psy4658 118 EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKL 164 (182)
Q Consensus 118 el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kl 164 (182)
-|..++..|.........+...+.+....++.---..+.+.+++-+-
T Consensus 72 fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~~k~~e~L~er~ 118 (148)
T COG2882 72 FISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIELKALEKLKERQ 118 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555445555555555555555555555555555443
No 197
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.31 E-value=6.1e+02 Score=23.96 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=11.9
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNK 131 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~k 131 (182)
+..-+.++..|.+.+..+.+++++-..
T Consensus 482 r~NYE~QLs~MSEHLasmNeqL~~Q~e 508 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMNEQLAKQRE 508 (518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 198
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.11 E-value=5e+02 Score=22.89 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 32 LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLK 69 (182)
Q Consensus 32 ~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~ 69 (182)
+.+=+.=+.-.|+++..+|..+--...+|......|..
T Consensus 7 K~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKk 44 (319)
T PF09789_consen 7 KSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKK 44 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555554444444433333333
No 199
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.53 E-value=3e+02 Score=20.09 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=12.8
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQA 136 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~l 136 (182)
..+.++..++..+..+...+.++..+...+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 91 FLDKKIEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333
No 200
>KOG4673|consensus
Probab=23.42 E-value=7.4e+02 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy4658 122 QDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNH 156 (182)
Q Consensus 122 ~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~ 156 (182)
+.++|-|++.++....+-+..+..+..+-+.+...
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33455555555555555544444444444444333
No 201
>PRK10722 hypothetical protein; Provisional
Probab=23.33 E-value=3.3e+02 Score=23.12 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=28.0
Q ss_pred hhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy4658 10 SFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEV----EALNAKLLEEKTTLLKNLEGE 74 (182)
Q Consensus 10 ~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkel----E~k~~~L~~EK~~L~~qLq~E 74 (182)
=+-++||+++-+.. +-+.=.|..+..+...| +.++..+.+..+.|+-+|...
T Consensus 140 p~~lrPL~qlwr~~-------------Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t 195 (247)
T PRK10722 140 PAQVRPLYQLWRDG-------------QALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELT 195 (247)
T ss_pred chhhhHHHHHHHHh-------------hHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 35688998888721 11112233333333344 566666666666666666554
No 202
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.20 E-value=5.5e+02 Score=23.07 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q psy4658 33 EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89 (182)
Q Consensus 33 eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~ 89 (182)
..++-.+.+-+.+..+...-||.-...+.+|...|+.||++-.-.+.+.++....|.
T Consensus 112 ~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Ln 168 (401)
T PF06785_consen 112 KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLN 168 (401)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH
Confidence 334444445555566666777888888888888888888888777777777766553
No 203
>KOG4005|consensus
Probab=23.06 E-value=4.8e+02 Score=22.31 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQE 83 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee 83 (182)
.-+.|..++-+++.|.+.-.+-..+..-|.+.+..|..+-+.|...|.--..++++..+
T Consensus 88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 33455556666666666655555555555566666666666555555544444444443
No 204
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=23.06 E-value=5.4e+02 Score=22.89 Aligned_cols=55 Identities=25% Similarity=0.313 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 122 QDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 122 ~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
.+.....|..|...+.+.+..+...|..-+.-.+.|......|+..|..-...|.
T Consensus 315 rD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 315 RDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888899999999999999999999999999999988877665553
No 205
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=23.02 E-value=2.8e+02 Score=19.63 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
..+..++......+...+...+-|+.+...|.. .+--+|-.+|+.+-.-+|+.+.+
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k----------------~eRK~RtHRLi~rGa~lEsi~~e 59 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK----------------KERKERTHRLIERGAILESIFPE 59 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhhHHHHHHhhc
Confidence 344445555555555555555444444444433 24567889999999999998853
No 206
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.93 E-value=4.3e+02 Score=21.76 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=5.4
Q ss_pred hHHHHHhhHHHHHHH
Q psy4658 115 LNDEIAHQDELINKL 129 (182)
Q Consensus 115 l~~el~~~~e~i~KL 129 (182)
+..++..+.-.+..+
T Consensus 61 l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 61 LEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 207
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.72 E-value=3.7e+02 Score=20.86 Aligned_cols=52 Identities=27% Similarity=0.238 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREE-----KARKEVEALNAKLLEEKTTLLKNLEGEKS 76 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e-----~~rkelE~k~~~L~~EK~~L~~qLq~E~~ 76 (182)
.-.+...+..|+.+++..+.... ++.-.+++++.++..|...+..++.+.+.
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777665532 34445677777777777776666655443
No 208
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.70 E-value=3.2e+02 Score=20.18 Aligned_cols=58 Identities=12% Similarity=-0.009 Sum_probs=32.0
Q ss_pred hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L 67 (182)
++.|--|=|+|-... .++-...+...+.-+...+...+.....++.++..+......+
T Consensus 54 ~~VYk~VG~vlv~qd---~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 54 TPIYKIVGNLLVKVD---KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred chhHHHhhHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777766666 5555555555555555555555555555555444444444333
No 209
>PF14992 TMCO5: TMCO5 family
Probab=22.57 E-value=5.1e+02 Score=22.43 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 10 SFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLK 69 (182)
Q Consensus 10 ~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~ 69 (182)
|++++|=.-...++.+++++.+...++..+..-..-.-...+++.+.+.++..++..+..
T Consensus 113 ~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lL 172 (280)
T PF14992_consen 113 FSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLL 172 (280)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 210
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=22.10 E-value=2.7e+02 Score=19.01 Aligned_cols=45 Identities=29% Similarity=0.356 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 55 ALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 55 ~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
.....+..|+.+|..+|..-.+.+.-.-+.-......+..++..|
T Consensus 3 kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L 47 (69)
T PF08912_consen 3 KDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQL 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777766666555544444333333333344444433
No 211
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.00 E-value=5.3e+02 Score=22.43 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=47.3
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
.....+..++..+..+...+.....++..++.....+...|..-..-++.|+--+.++..++.+++..+
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQL 307 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHh
Confidence 344445556666666666666666677777777777777777777777777777777777777776654
No 212
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=21.99 E-value=30 Score=33.37 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q psy4658 31 KLEEKVAQTEA 41 (182)
Q Consensus 31 ~~eeel~~lke 41 (182)
.+..++..+++
T Consensus 295 ~LrDElD~lR~ 305 (713)
T PF05622_consen 295 ALRDELDELRE 305 (713)
T ss_dssp -----------
T ss_pred HHhhhHHHHHH
Confidence 33333333333
No 213
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=21.86 E-value=4.5e+02 Score=21.51 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=38.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHH
Q psy4658 67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNK 131 (182)
Q Consensus 67 L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~k 131 (182)
+...+..-...+++.|=++.+|...|..++..|.. .+.....|+.++.....+-....-
T Consensus 89 ~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~------~~~ra~~LqaDl~~~~~Q~~~va~ 147 (192)
T PF11180_consen 89 IYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAE------SEARANRLQADLQIARQQQQQVAA 147 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677888899999999999999888853 334445566666555444444433
No 214
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.74 E-value=2.8e+02 Score=19.11 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=26.7
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH
Q psy4658 114 NLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLN 158 (182)
Q Consensus 114 ~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~ 158 (182)
+|+..+.+.-|+|.-|+-|...+-+.++.++...+.-......|.
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 455666666677777777777776666666655554333333333
No 215
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=21.66 E-value=1.4e+02 Score=15.65 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4658 50 RKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 50 rkelE~k~~~L~~EK~~L 67 (182)
.+++|..+.+|..++..+
T Consensus 3 kk~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 3 KKQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 456777777777666543
No 216
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=21.58 E-value=82 Score=18.77 Aligned_cols=19 Identities=47% Similarity=0.674 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHhhHHHHH
Q psy4658 154 VNHLNKVKAKLEQTLDELE 172 (182)
Q Consensus 154 ~~~l~K~k~Kle~~l~dlE 172 (182)
+..|+|+-..|+..|+++|
T Consensus 16 vqeLck~t~~Le~rI~ele 34 (36)
T PF13887_consen 16 VQELCKLTDNLETRIDELE 34 (36)
T ss_pred HHHHHHHhccHHHHHHHHh
Confidence 5678899999999999987
No 217
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.44 E-value=3.2e+02 Score=19.61 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=17.5
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 111 QIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 111 kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l 147 (182)
-+..+...+..+...+.++.+....+......+...+
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 88 AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444444444444433
No 218
>PRK00736 hypothetical protein; Provisional
Probab=21.25 E-value=2.6e+02 Score=18.61 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=20.4
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQK 142 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~ 142 (182)
|..|++.+..+...|..|.+..+.+-+++..
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777666666555544
No 219
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.90 E-value=2.2e+02 Score=17.55 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=28.4
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQ 148 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~ 148 (182)
+|.....|...+..+......|.+|+..|...+..+...++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455667777777777777888887777777776666554
No 220
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.89 E-value=4.8e+02 Score=21.49 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4658 51 KEVEALNAKLLEEKTTLL 68 (182)
Q Consensus 51 kelE~k~~~L~~EK~~L~ 68 (182)
.....+...+..++..|.
T Consensus 38 ~~sQ~~id~~~~e~~~L~ 55 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELL 55 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 221
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.66 E-value=3.2e+02 Score=19.39 Aligned_cols=54 Identities=17% Similarity=0.053 Sum_probs=28.8
Q ss_pred hhHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 6 AAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTL 67 (182)
Q Consensus 6 ~~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L 67 (182)
|.++|.++--+ .+.++..--.++.-+..--.....+..+|......+....++|
T Consensus 1 ~~~~f~~~~~~--------v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l 54 (99)
T PF10046_consen 1 AERMFSKVSKY--------VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDL 54 (99)
T ss_pred ChhHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677776665 3444555555555555555555555555555544444444333
No 222
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.60 E-value=3.1e+02 Score=19.20 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4658 125 LINKLNKEKKQAGEVTQKTAE 145 (182)
Q Consensus 125 ~i~KL~kEKk~lee~~~~~~~ 145 (182)
.+.+|..+...|++++..++.
T Consensus 54 en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 54 ENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 223
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=5.5e+02 Score=22.02 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 29 QQKLEEKVAQTEASLAREEKARKEVEA 55 (182)
Q Consensus 29 l~~~eeel~~lke~l~k~e~~rkelE~ 55 (182)
+..-+.++..+.......+.....|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~ 59 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDN 59 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333333333
No 224
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.03 E-value=3.9e+02 Score=20.17 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658 122 QDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180 (182)
Q Consensus 122 ~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk 180 (182)
+...-.++..++-.++-.-+++.....--+.-.+.+..++..|-..|.-||..|.+|+.
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555666677777777777777777777763
No 225
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.01 E-value=3e+02 Score=21.70 Aligned_cols=18 Identities=50% Similarity=0.433 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy4658 56 LNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 56 k~~~L~~EK~~L~~qLq~ 73 (182)
....+..|...|..+|..
T Consensus 155 ~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 333344444444444443
Done!