Query psy4658
Match_columns 182
No_of_seqs 123 out of 299
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:28:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fxo_A Myosin heavy chain, car 99.9 3.6E-20 1.2E-24 140.3 17.7 125 12-152 1-125 (129)
2 3bas_A Myosin heavy chain, str 99.7 2.2E-17 7.5E-22 117.6 11.5 81 11-101 1-81 (89)
3 1i84_S Smooth muscle myosin he 99.0 6.7E-10 2.3E-14 109.0 10.4 170 7-179 840-1052(1184)
4 2fxo_A Myosin heavy chain, car 98.2 0.00029 1E-08 52.6 17.1 115 54-181 12-126 (129)
5 2dfs_A Myosin-5A; myosin-V, in 98.2 2.7E-05 9.4E-10 76.0 14.5 70 102-174 976-1045(1080)
6 1c1g_A Tropomyosin; contractIl 96.9 0.097 3.3E-06 40.8 21.7 45 29-73 22-66 (284)
7 2dfs_A Myosin-5A; myosin-V, in 96.4 0.13 4.4E-06 50.4 16.6 147 30-181 924-1078(1080)
8 1i84_S Smooth muscle myosin he 96.4 0.0028 9.5E-08 62.3 4.9 70 105-174 1006-1075(1184)
9 2efr_A General control protein 96.2 0.28 9.6E-06 37.6 17.7 92 76-180 28-119 (155)
10 3bas_A Myosin heavy chain, str 96.0 0.08 2.7E-06 36.8 9.6 30 147-176 58-87 (89)
11 3na7_A HP0958; flagellar bioge 95.8 0.62 2.1E-05 37.9 20.4 143 25-174 16-158 (256)
12 3o0z_A RHO-associated protein 95.4 0.67 2.3E-05 35.9 20.0 141 29-180 8-157 (168)
13 3na7_A HP0958; flagellar bioge 95.2 0.99 3.4E-05 36.7 19.6 42 27-68 32-73 (256)
14 2eqb_B RAB guanine nucleotide 95.0 0.6 2.1E-05 33.0 12.4 76 25-100 17-93 (97)
15 2ocy_A RAB guanine nucleotide 92.1 3.1 0.00011 31.7 13.2 79 58-136 54-141 (154)
16 3vkg_A Dynein heavy chain, cyt 91.0 21 0.0007 39.0 23.8 71 106-176 2031-2101(3245)
17 2efr_A General control protein 88.3 7 0.00024 29.7 20.9 120 39-158 26-146 (155)
18 2eqb_B RAB guanine nucleotide 87.2 6.1 0.00021 27.8 11.8 68 53-120 17-93 (97)
19 2b9c_A Striated-muscle alpha t 87.0 8 0.00027 29.0 12.5 102 25-126 15-117 (147)
20 2ocy_A RAB guanine nucleotide 83.6 13 0.00043 28.3 16.0 71 30-100 54-125 (154)
21 3o0z_A RHO-associated protein 82.7 14 0.00049 28.3 19.8 44 54-97 61-104 (168)
22 3vkg_A Dynein heavy chain, cyt 82.0 58 0.002 35.7 17.3 43 103-145 2056-2098(3245)
23 2w83_C C-JUN-amino-terminal ki 80.5 11 0.00037 25.3 7.9 67 111-177 10-76 (77)
24 3oja_B Anopheles plasmodium-re 80.0 31 0.0011 30.4 17.1 23 28-50 457-479 (597)
25 2e7s_A RAB guanine nucleotide 79.8 4.2 0.00014 30.3 5.8 43 32-74 44-86 (135)
26 2e7s_A RAB guanine nucleotide 79.1 6 0.00021 29.4 6.5 78 55-132 39-125 (135)
27 3swk_A Vimentin; cytoskeleton, 79.0 13 0.00043 25.3 10.2 71 52-122 4-82 (86)
28 2v71_A Nuclear distribution pr 78.5 22 0.00075 27.8 20.7 60 111-170 89-155 (189)
29 3ol1_A Vimentin; structural ge 76.4 19 0.00063 25.8 11.8 22 103-124 83-104 (119)
30 3hnw_A Uncharacterized protein 75.5 22 0.00075 26.3 8.9 67 33-99 67-133 (138)
31 1d7m_A Cortexillin I; coiled-c 75.4 18 0.0006 25.1 11.4 35 85-119 20-55 (101)
32 1ic2_A Tropomyosin alpha chain 74.9 16 0.00054 24.3 10.3 63 26-88 5-67 (81)
33 1fxk_A Prefoldin; archaeal pro 73.7 19 0.00064 24.6 8.7 38 110-147 65-102 (107)
34 3oja_B Anopheles plasmodium-re 72.0 51 0.0018 28.9 15.5 11 162-172 568-578 (597)
35 2v71_A Nuclear distribution pr 71.6 34 0.0012 26.7 21.0 53 125-177 89-141 (189)
36 3hnw_A Uncharacterized protein 71.0 29 0.00098 25.6 11.2 42 27-68 82-123 (138)
37 3q8t_A Beclin-1; autophagy, AT 68.6 26 0.00089 24.2 13.9 41 28-68 5-45 (96)
38 3efg_A Protein SLYX homolog; x 67.8 23 0.00077 23.6 6.7 29 112-140 16-44 (78)
39 2w6b_A RHO guanine nucleotide 67.3 16 0.00056 22.9 5.3 38 25-62 15-52 (56)
40 3u59_A Tropomyosin beta chain; 67.1 28 0.00096 24.0 12.3 62 25-86 7-68 (101)
41 2z5i_A TM, general control pro 67.0 7.4 0.00025 24.1 3.8 24 156-179 9-32 (52)
42 2l5g_A GPS2 protein, G protein 66.8 13 0.00044 21.5 4.4 22 50-71 17-38 (38)
43 2jee_A YIIU; FTSZ, septum, coi 66.7 27 0.00092 23.6 9.8 59 115-173 11-69 (81)
44 3u1c_A Tropomyosin alpha-1 cha 64.3 33 0.0011 23.8 12.8 60 25-84 7-66 (101)
45 1x79_B RAB GTPase binding effe 62.3 40 0.0014 24.1 12.5 65 23-90 2-66 (112)
46 3mq7_A Bone marrow stromal ant 59.5 47 0.0016 24.0 10.9 77 64-142 27-103 (121)
47 2v66_B Nuclear distribution pr 53.7 58 0.002 23.2 10.5 53 48-100 49-101 (111)
48 1x4t_A Hypothetical protein LO 53.7 21 0.00071 24.8 4.5 26 118-143 53-78 (92)
49 1ic2_A Tropomyosin alpha chain 53.5 45 0.0015 22.0 11.0 20 113-132 9-28 (81)
50 2i1j_A Moesin; FERM, coiled-co 52.6 32 0.0011 31.1 6.9 100 47-146 334-448 (575)
51 3q8t_A Beclin-1; autophagy, AT 49.6 60 0.0021 22.3 12.7 74 88-161 16-90 (96)
52 4etp_A Kinesin-like protein KA 47.2 55 0.0019 28.2 7.3 54 114-174 7-60 (403)
53 3cl3_D NF-kappa-B essential mo 43.9 16 0.00054 26.9 2.8 18 130-147 22-39 (130)
54 4etp_A Kinesin-like protein KA 42.8 1.1E+02 0.0038 26.2 8.5 51 25-75 8-58 (403)
55 4h22_A Leucine-rich repeat fli 42.1 88 0.003 22.0 8.9 53 76-134 2-54 (103)
56 3oja_A Leucine-rich immune mol 41.8 1.6E+02 0.0056 25.0 13.4 41 108-148 433-473 (487)
57 2lw1_A ABC transporter ATP-bin 39.7 80 0.0027 21.0 5.8 59 116-175 21-79 (89)
58 3u06_A Protein claret segregat 37.7 1.2E+02 0.0042 26.1 8.0 52 25-76 8-59 (412)
59 2i1j_A Moesin; FERM, coiled-co 37.5 51 0.0017 29.8 5.7 75 27-101 342-416 (575)
60 2lw1_A ABC transporter ATP-bin 37.1 91 0.0031 20.7 8.0 25 49-73 23-47 (89)
61 3mtu_E Head morphogenesis prot 36.8 43 0.0015 22.4 3.8 16 164-179 42-57 (77)
62 2zqm_A Prefoldin beta subunit 36.0 1E+02 0.0035 21.0 10.9 36 112-147 72-107 (117)
63 1kd8_A GABH AIV, GCN4 acid bas 36.0 61 0.0021 18.4 4.7 28 51-78 4-31 (36)
64 2b9c_A Striated-muscle alpha t 35.3 1.3E+02 0.0046 22.1 11.0 65 22-100 47-111 (147)
65 2zdi_C Prefoldin subunit alpha 34.7 1.2E+02 0.004 22.1 6.5 40 105-144 100-139 (151)
66 2v4h_A NF-kappa-B essential mo 33.5 1.3E+02 0.0044 21.4 11.6 71 29-99 26-99 (110)
67 1go4_E MAD1 (mitotic arrest de 32.7 1.3E+02 0.0043 21.0 6.7 22 79-100 22-43 (100)
68 2oqq_A Transcription factor HY 31.5 67 0.0023 18.9 3.6 25 108-132 8-32 (42)
69 2v66_B Nuclear distribution pr 31.3 1.4E+02 0.0048 21.2 15.4 43 36-78 5-47 (111)
70 3a7o_A Autophagy protein 16; c 29.2 1.2E+02 0.0042 19.9 7.9 49 25-73 23-71 (75)
71 2w6a_A ARF GTPase-activating p 27.5 1.2E+02 0.0041 19.2 6.8 41 34-74 13-53 (63)
72 2jee_A YIIU; FTSZ, septum, coi 27.3 1.4E+02 0.0049 20.0 10.0 35 31-65 10-44 (81)
73 3efg_A Protein SLYX homolog; x 27.3 1.4E+02 0.0046 19.7 6.5 33 112-144 30-62 (78)
74 1gd2_E Transcription factor PA 27.0 1.3E+02 0.0045 19.4 5.8 36 109-144 28-63 (70)
75 3c3g_A Alpha/beta peptide with 25.7 94 0.0032 17.3 4.0 22 52-73 4-25 (33)
76 1wt6_A Myotonin-protein kinase 25.5 1.6E+02 0.0053 19.8 7.6 49 25-73 19-70 (81)
77 3ajw_A Flagellar FLIJ protein; 25.0 1.8E+02 0.0062 20.4 17.0 107 33-167 18-124 (150)
78 3s4r_A Vimentin; alpha-helix, 24.8 1.6E+02 0.0056 19.8 10.1 29 36-64 11-39 (93)
79 3l4f_A RHO guanine nucleotide 24.1 1.4E+02 0.0049 18.9 6.2 42 25-66 12-53 (61)
80 1gk7_A Vimentin; intermediate 23.9 88 0.003 17.9 3.2 30 140-169 8-37 (39)
81 1ci6_A Transcription factor AT 23.5 1.4E+02 0.0048 18.6 4.8 27 110-136 30-56 (63)
82 3l4q_C Phosphatidylinositol 3- 23.2 2.5E+02 0.0085 21.3 12.7 56 30-85 13-68 (170)
83 3u06_A Protein claret segregat 21.2 2.2E+02 0.0076 24.4 6.7 55 113-174 6-60 (412)
84 2zqm_A Prefoldin beta subunit 20.5 2E+02 0.007 19.4 5.6 55 8-72 54-108 (117)
85 4e61_A Protein BIM1; EB1-like 20.5 2.3E+02 0.0078 19.9 8.6 52 32-83 9-60 (106)
86 2r2v_A GCN4 leucine zipper; co 20.2 1.3E+02 0.0044 16.9 4.1 25 51-75 4-28 (34)
87 2bni_A General control protein 20.0 1.3E+02 0.0044 16.9 4.1 23 52-74 5-27 (34)
No 1
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=99.86 E-value=3.6e-20 Score=140.34 Aligned_cols=125 Identities=22% Similarity=0.349 Sum_probs=117.3
Q ss_pred hcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q psy4658 12 KGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQ 91 (182)
Q Consensus 12 kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~ 91 (182)
+|||||++++ ++++|.+++++|.++++.+.+.+..|++|+..++++.+++|+|+.+|+++++++++++++|.+|+++
T Consensus 1 ~vKPLL~~~~---~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~ 77 (129)
T 2fxo_A 1 GSSPLLKSAE---REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKN 77 (129)
T ss_dssp CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy4658 92 KADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152 (182)
Q Consensus 92 K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~ 152 (182)
+++|+.+|++ +++.+....+.++.|...++.++..+..+..++.+.+.
T Consensus 78 k~eLe~~l~e-------------l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 78 KIQLEAKVKE-------------MNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999954 88888889999999999999998888888888776653
No 2
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=99.74 E-value=2.2e-17 Score=117.59 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=70.7
Q ss_pred hhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy4658 11 FKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90 (182)
Q Consensus 11 ~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~ 90 (182)
+||||||++++ ++++|.++++++..+++.+.+++..|++|+.++++|.+++|+|+.| +++++++|.+|++
T Consensus 1 ~kVKPLL~~~~---~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~ 70 (89)
T 3bas_A 1 GSHMPLLSIAR---QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLS 70 (89)
T ss_dssp ---------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred CCCCcccccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHH
Confidence 58999999999 9999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhh
Q psy4658 91 QKADLETQLAA 101 (182)
Q Consensus 91 ~K~eLE~~l~e 101 (182)
+|++|+.+|++
T Consensus 71 ~K~eLE~~l~e 81 (89)
T 3bas_A 71 KNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.04 E-value=6.7e-10 Score=109.04 Aligned_cols=170 Identities=31% Similarity=0.389 Sum_probs=84.7
Q ss_pred hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy4658 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAA 86 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~ 86 (182)
.++|++++|++...+ ...+|..+..++..++..+.+.+..+.+++..+..+..+++.+..+++.+...+.+++..+.
T Consensus 840 ~rl~~klkpLl~~a~---~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~ 916 (1184)
T 1i84_S 840 MXLFFXIXPLLKVTR---QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916 (1184)
T ss_dssp HHHHHHHTTTCCCCT---HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999987776 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-------------------------------------------hhhhhhhHHhhhhhHHHHHhhH
Q psy4658 87 KLAAQKADLETQLAA-------------------------------------------DQDKATKDHQIRNLNDEIAHQD 123 (182)
Q Consensus 87 ~L~~~K~eLE~~l~e-------------------------------------------e~EK~~~e~kik~l~~el~~~~ 123 (182)
.+......++..+.+ ..+....+.++..++.++..+.
T Consensus 917 ~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~le 996 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777765 2334455556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHh
Q psy4658 124 ELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREK 179 (182)
Q Consensus 124 e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ek 179 (182)
+.+..+..+++.++..+..+...+...+++...+.+.+.+++..+++++..+...+
T Consensus 997 e~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e 1052 (1184)
T 1i84_S 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052 (1184)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888887776554
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=98.17 E-value=0.00029 Score=52.58 Aligned_cols=115 Identities=26% Similarity=0.304 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHH
Q psy4658 54 EALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEK 133 (182)
Q Consensus 54 E~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEK 133 (182)
+..+..+..+...|...+........+.+.....|...+++|-.+|. .-.+-+...++.+.+|.+.+
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~-------------~E~~~l~e~EE~~~~L~~~k 78 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ-------------AEQDNLADAEERCDQLIKNK 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhHHHHHHHHHHHH
Confidence 34555666677777777777777777778888888888888888774 34456778899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhh
Q psy4658 134 KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181 (182)
Q Consensus 134 k~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~ 181 (182)
..|+..+..+.+++..+++..+.|...+.+++..+++|...++....+
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999876543
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.17 E-value=2.7e-05 Score=76.02 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=65.6
Q ss_pred hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 102 DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 102 e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
+.+++.++++++.|++++..+.+.+.++.++++.+++.++++.++|+ +++++|.+.+.+|++++++|+..
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999887 99999999999999999999953
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.92 E-value=0.097 Score=40.81 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
+..+..++..+...+.........+...+..+......+...+..
T Consensus 22 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (284)
T 1c1g_A 22 ADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.39 E-value=0.13 Score=50.36 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNA----KLLEEKTTLLKN---LEGEKSGLSSIQERAAKLAAQKADLETQLAA- 101 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~----~L~~EK~~L~~q---Lq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e- 101 (182)
..++..+..+...+...+.....+.+... .+..+...|... |+........++.+...|...-.+|+..+..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444332 233344444222 2222223333344444455555555555543
Q ss_pred hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhh
Q psy4658 102 DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181 (182)
Q Consensus 102 e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~ 181 (182)
.+++...+..+..+.+ .+.+.++.|.+++..|+....++...++..++... ...+..++..-..++..++.|+..
T Consensus 1004 ~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1004 QTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777666665 44488888988988888888888866666554333 356666667777777777777653
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.37 E-value=0.0028 Score=62.35 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=0.0
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
....+..+..+...+....+.+..+.+++..++..+..+...+...+.....+.+....++..+.++...
T Consensus 1006 ~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~e 1075 (1184)
T 1i84_S 1006 RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075 (1184)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555666666666666666666666655555555555555555555544444443
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.22 E-value=0.28 Score=37.57 Aligned_cols=92 Identities=25% Similarity=0.374 Sum_probs=59.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy4658 76 SGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVN 155 (182)
Q Consensus 76 ~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~ 155 (182)
..+.-++++......+..+|+..+. .+.+.+++ ++-+-.+.+.--..+++.+..++..|..-+.++.
T Consensus 28 ~dLEraEERae~aE~k~~eLEeeL~------~v~~nlKs-------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 28 KLLERAEERAELSEGKSAELEEELK------TVTNNLKS-------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcc-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666652 22333333 3333444444445566677777788888888888
Q ss_pred hHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658 156 HLNKVKAKLEQTLDELEDSLEREKK 180 (182)
Q Consensus 156 ~l~K~k~Kle~~l~dlE~~Le~Ekk 180 (182)
...+.-.+|+..|++||+.|..++.
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Ke 119 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877653
No 10
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=96.00 E-value=0.08 Score=36.78 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=28.3
Q ss_pred HHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 147 LQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 147 l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
+++-++.+..|.+.+.-|+..|.+++++|+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999999999999999999875
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.78 E-value=0.62 Score=37.87 Aligned_cols=143 Identities=13% Similarity=0.222 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD 104 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E 104 (182)
.+.++..+...+..+...+...+.....+...+..+..+..++..++..-...+.+...+..+... .|. .++..++
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~---~l~-~v~~~kE 91 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK---KMS-EIKSERE 91 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HCSSSSH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-ccCCHHH
Confidence 555555555555555555555555555555555555555555554444444333333333332222 121 1222344
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
-.+..+.|..+...+..+++.|..+......++..+..+...+..-. ..+...+..+...+.+++..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~---~~l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE---KLALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444444454444444444444444444444444333333333222 23333444444444444433
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.43 E-value=0.67 Score=35.89 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hh
Q psy4658 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-----DQ 103 (182)
Q Consensus 29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-----e~ 103 (182)
+..++..+..+.+.|..+. +..+.+-.--+.+...+++--..+.+..++|..|...+..|+..+.. ..
T Consensus 8 i~~LekQL~E~n~kLk~Es-------E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTES-------DTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp --CTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444332 22233333444555555555666677777888888888877777765 22
Q ss_pred hhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHH----hhHHHHHHhHHHHh
Q psy4658 104 DKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLE----QTLDELEDSLEREK 179 (182)
Q Consensus 104 EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle----~~l~dlE~~Le~Ek 179 (182)
|+.+. .-.++-+..+...|.-|.-+.+.+-.+...+..+-..-.++++.|.|-++.++ =.+--+..+|++|.
T Consensus 81 Er~~r----~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 81 ERRDR----GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 22111 11223334444455555555555555555555555556667777788777777 33667777777765
Q ss_pred h
Q psy4658 180 K 180 (182)
Q Consensus 180 k 180 (182)
+
T Consensus 157 ~ 157 (168)
T 3o0z_A 157 N 157 (168)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.23 E-value=0.99 Score=36.66 Aligned_cols=42 Identities=7% Similarity=-0.049 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLL 68 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~ 68 (182)
.++..++.++..++..+........+++.....+..+...+.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433333
No 14
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.01 E-value=0.6 Score=32.99 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKS-GLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~-~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
.+.++...+.++..+...+..+...|...|....++..|.-+|...|-.+.. .++++--.+..+..+-..|..+|+
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677888899999999999999999999999999999999999999876643 344444444445555555555554
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.13 E-value=3.1 Score=31.70 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------hhhhhhhHHhhhhhHHHHHhhHHHHHH
Q psy4658 58 AKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---------DQDKATKDHQIRNLNDEIAHQDELINK 128 (182)
Q Consensus 58 ~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---------e~EK~~~e~kik~l~~el~~~~e~i~K 128 (182)
.....+.+.|...|..+......+|..+..+..-=-+|...+=+ ..+.+.++.++..|...+...+..+..
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555444444443333333322 345666666666776666666666666
Q ss_pred HHHHHHHH
Q psy4658 129 LNKEKKQA 136 (182)
Q Consensus 129 L~kEKk~l 136 (182)
++.+...|
T Consensus 134 lq~ql~~L 141 (154)
T 2ocy_A 134 LTLQLKNL 141 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.03 E-value=21 Score=39.05 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=56.9
Q ss_pred hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658 106 ATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176 (182)
Q Consensus 106 ~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le 176 (182)
......+..+++.+..+.+..+....++..++.....+...|...+.-++.|+-=+.+...++..+...+.
T Consensus 2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 34556677777777778888888888888888888888888888888888888888888888888876543
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=88.27 E-value=7 Score=29.71 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHH
Q psy4658 39 TEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLND 117 (182)
Q Consensus 39 lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~ 117 (182)
+...|.+.+.+....+.++..|..+...+...|.+-......+..+-......-..|..++++ +.--...+..|..|+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333332222222222222222222333333332 1112245566777777
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH
Q psy4658 118 EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLN 158 (182)
Q Consensus 118 el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~ 158 (182)
.|..+++.+..-....+.+.+.+.++..+|..-..+.-||+
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 77777777666655666666677777777665444444443
No 18
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.17 E-value=6.1 Score=27.79 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------hhhhhhhHHhhhhhHHHHH
Q psy4658 53 VEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---------DQDKATKDHQIRNLNDEIA 120 (182)
Q Consensus 53 lE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---------e~EK~~~e~kik~l~~el~ 120 (182)
++..+.....+.+.|...|..+......+|..+..+..---+|...|=+ ..+.+.++.+...|..+|.
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444667777788888888888888887776666555555544422 3344455555555554443
No 19
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=87.02 E-value=8 Score=29.01 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD 104 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E 104 (182)
.++-+......|..+.......+..|+.|+.....-..-...|..||..-.....+++.++.-....-.-++..+..-.+
T Consensus 15 ~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraee 94 (147)
T 2b9c_A 15 AQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 94 (147)
T ss_dssp GGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777777888888888999988888888888899999888888888887777666555555555532111
Q ss_pred -hhhhHHhhhhhHHHHHhhHHHH
Q psy4658 105 -KATKDHQIRNLNDEIAHQDELI 126 (182)
Q Consensus 105 -K~~~e~kik~l~~el~~~~e~i 126 (182)
--..+.+|+.|++++.....++
T Consensus 95 Rae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 95 RAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234444555544444443333
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.64 E-value=13 Score=28.29 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK-SGLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~-~~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
...+.++..+...+..+...|...|....++..|.-+|...|-.+. ..++++--.+..+..+-..|+.++.
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666666666654442 2333333334444444445555443
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.74 E-value=14 Score=28.35 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4658 54 EALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLET 97 (182)
Q Consensus 54 E~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~ 97 (182)
+.....|..+...|+.+|.+|+....-..+...-|..+-.-|..
T Consensus 61 ~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~ 104 (168)
T 3o0z_A 61 ENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQE 104 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666555554444443333333
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.01 E-value=58 Score=35.70 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=26.5
Q ss_pred hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE 145 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~ 145 (182)
.+|...+..+...+..+.....-|+.|.-|+..+.+....+..
T Consensus 2056 ~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2056 RETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 4455566666666666666666666677777666665555443
No 23
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=80.47 E-value=11 Score=25.35 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=48.2
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHH
Q psy4658 111 QIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177 (182)
Q Consensus 111 kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~ 177 (182)
.+.+|-.+..++-++-..|+--|+.|=.++.+++..-..-..-...+..++.+++..+.++|+.|.+
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556677777888888888888888888998888887888889999999999999999988753
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.96 E-value=31 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 28 RQQKLEEKVAQTEASLAREEKAR 50 (182)
Q Consensus 28 El~~~eeel~~lke~l~k~e~~r 50 (182)
++..+..++..+++.+...+...
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l 479 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLL 479 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555554444443333
No 25
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.79 E-value=4.2 Score=30.29 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4658 32 LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE 74 (182)
Q Consensus 32 ~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E 74 (182)
.+.++..+...+..+...|...|.....+..|.-+|...|-.+
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE 86 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 86 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666666666666544
No 26
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.06 E-value=6 Score=29.43 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------hhhhhhhHHhhhhhHHHHHhhHHH
Q psy4658 55 ALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---------DQDKATKDHQIRNLNDEIAHQDEL 125 (182)
Q Consensus 55 ~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---------e~EK~~~e~kik~l~~el~~~~e~ 125 (182)
..+.....+.+.|...|..+......+|..+..+..---+|...+=+ ..+.+.++.++..|...+...+..
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777788888888888888888888777766665566555433 455666666666666666665555
Q ss_pred HHHHHHH
Q psy4658 126 INKLNKE 132 (182)
Q Consensus 126 i~KL~kE 132 (182)
+..++..
T Consensus 119 l~~lq~Q 125 (135)
T 2e7s_A 119 LDTLTLQ 125 (135)
T ss_dssp C------
T ss_pred HHHHHHH
Confidence 5554433
No 27
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=79.04 E-value=13 Score=25.31 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------hhhhhhhHHhhhhhHHHHHhh
Q psy4658 52 EVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--------DQDKATKDHQIRNLNDEIAHQ 122 (182)
Q Consensus 52 elE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--------e~EK~~~e~kik~l~~el~~~ 122 (182)
+|-.++..+..++..|..++..-+..+.+.-.++..=+..+...|..+.. -.-+..++.+|.+|.++|.-+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777776666666666666666556666666665554 344777888888888887643
No 28
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.52 E-value=22 Score=27.81 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=36.9
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHH
Q psy4658 111 QIRNLNDEIAHQDELINKLNKEKKQAGE-------VTQKTAEELQAAEDKVNHLNKVKAKLEQTLDE 170 (182)
Q Consensus 111 kik~l~~el~~~~e~i~KL~kEKk~lee-------~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~d 170 (182)
.+..|+.++..+...+..|.+-...++. ...-+...+.+-+.+.++.---.+=|++.+++
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665554 33445556666666666666666666666664
No 29
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.37 E-value=19 Score=25.83 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=15.3
Q ss_pred hhhhhhHHhhhhhHHHHHhhHH
Q psy4658 103 QDKATKDHQIRNLNDEIAHQDE 124 (182)
Q Consensus 103 ~EK~~~e~kik~l~~el~~~~e 124 (182)
.-+..++.+|.+|.++|.-+..
T Consensus 83 l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 83 LARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3367777777888888776543
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.53 E-value=22 Score=26.25 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 33 EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 33 eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
-.++-+++......+....++...+..|-.+...++..+..-...+.+..+....|......||..+
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555666666555566666666666666666666554
No 31
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=75.38 E-value=18 Score=25.10 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHH
Q psy4658 85 AAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEI 119 (182)
Q Consensus 85 ~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el 119 (182)
...|+++|.+|+.-+.. +.+-...++.++.++..|
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766654 333444444455444333
No 32
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.87 E-value=16 Score=24.30 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q psy4658 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKL 88 (182)
Q Consensus 26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L 88 (182)
-+-|..+..++..+.+.+...+...++.+....++..+...|.-.++.-.+.+..+++++...
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888888888888888888888877777777765443
No 33
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.67 E-value=19 Score=24.60 Aligned_cols=38 Identities=5% Similarity=0.132 Sum_probs=17.5
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 110 HQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 110 ~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l 147 (182)
.-+..|...+..++..|..|.+....++....++...|
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555444444444444443
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.05 E-value=51 Score=28.94 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=4.2
Q ss_pred HHHHhhHHHHH
Q psy4658 162 AKLEQTLDELE 172 (182)
Q Consensus 162 ~Kle~~l~dlE 172 (182)
..+.+++..++
T Consensus 568 ~~~~~~~~~l~ 578 (597)
T 3oja_B 568 SLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.62 E-value=34 Score=26.71 Aligned_cols=53 Identities=15% Similarity=0.297 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHH
Q psy4658 125 LINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177 (182)
Q Consensus 125 ~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~ 177 (182)
.|+.|.++...+...+..+...+-.-|-....|.....-....+.|++..|..
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ 141 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQ 141 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555555555555555555555556666666666666666776666543
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.02 E-value=29 Score=25.60 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLL 68 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~ 68 (182)
.++..+..++..++..+....-....+...+..|..+.+.|+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333333333333333333
No 37
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.61 E-value=26 Score=24.18 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLL 68 (182)
Q Consensus 28 El~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~ 68 (182)
++.++..++..++..=+.......+++.....+..+...+.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555666666665555555555555555555555444443
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.78 E-value=23 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=11.8
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVT 140 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~ 140 (182)
|..|+..++.++++|..|+...-.++..+
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~I 44 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTG 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333
No 39
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=67.32 E-value=16 Score=22.88 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~ 62 (182)
.-.++..+..+.+.++..++.+...|+.||.-..+++.
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55788889999999999999999999999988877754
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=67.08 E-value=28 Score=24.00 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAA 86 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~ 86 (182)
.-+-|..+.-+...+.+.....+...+..+....++..+...|.-.++.-.+.+..+++++.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778888888888888888888888888888888888888877776666666444
No 41
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=66.98 E-value=7.4 Score=24.07 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhHHHHHHhHHHHh
Q psy4658 156 HLNKVKAKLEQTLDELEDSLEREK 179 (182)
Q Consensus 156 ~l~K~k~Kle~~l~dlE~~Le~Ek 179 (182)
...+.-.||+.+||+||+.|..++
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eK 32 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQK 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345667788888888888887765
No 42
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=66.77 E-value=13 Score=21.50 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4658 50 RKEVEALNAKLLEEKTTLLKNL 71 (182)
Q Consensus 50 rkelE~k~~~L~~EK~~L~~qL 71 (182)
...++.++.+|-.||.+|+.||
T Consensus 17 i~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 17 ILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4445777788999999999875
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.67 E-value=27 Score=23.62 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=28.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHH
Q psy4658 115 LNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELED 173 (182)
Q Consensus 115 l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~ 173 (182)
|+..|...-++|+-|.-+...|.+.+..+....+.-..-...|..-...|.+....+.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555444333333333334444443333333
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.29 E-value=33 Score=23.77 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~ 84 (182)
.-+-|..+.-+...+.+.....+...+..+....++..+...|+-.++.-.+.+..+++.
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777778888888888888888888888888888888777666655555543
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=62.31 E-value=40 Score=24.12 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy4658 23 QILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90 (182)
Q Consensus 23 a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~ 90 (182)
|++-.....+..+...+++.|.+..+.|.+|+.. +..-+.+-..+++.-.+.+..+|-....|..
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888999998888888876 4444455555555555555555554444433
No 46
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.54 E-value=47 Score=24.00 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4658 64 KTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQK 142 (182)
Q Consensus 64 K~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~ 142 (182)
..-|+.||-.-++.+.+.+.....=...-..|-.-| ..++.....++..|+++|..+...+.+...+...+-..++.
T Consensus 27 T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL--~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 27 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASL--DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 455777887888888888866655555555555555 22333334456666666666655555555444444433333
No 47
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=53.67 E-value=58 Score=23.23 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 48 KARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 48 ~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
..+..|...+..|.+.--+|..+-......+.|.+.+....+.+.+=||..|.
T Consensus 49 ~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 49 AIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555556666666666677777777777766666666554
No 48
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=53.66 E-value=21 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4658 118 EIAHQDELINKLNKEKKQAGEVTQKT 143 (182)
Q Consensus 118 el~~~~e~i~KL~kEKk~lee~~~~~ 143 (182)
.|..+.|.|++|-+||.+++-++..|
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556678899999999999888654
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.50 E-value=45 Score=21.96 Aligned_cols=20 Identities=5% Similarity=0.033 Sum_probs=7.4
Q ss_pred hhhHHHHHhhHHHHHHHHHH
Q psy4658 113 RNLNDEIAHQDELINKLNKE 132 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kE 132 (182)
..|..+.....+....+...
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~ 28 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEAD 28 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 50
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.58 E-value=32 Score=31.08 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------------hhhhhhhHHh
Q psy4658 47 EKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---------------DQDKATKDHQ 111 (182)
Q Consensus 47 e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---------------e~EK~~~e~k 111 (182)
+..+.+|+.++.++..+-...+..|..-.+.....++.+.........|+..-.+ ..++...+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~ 413 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDE 413 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445666666666666666666555544443333333333333333333332222 4456666666
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEE 146 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~ 146 (182)
++..+..+..+.+...+=..|...|+........+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 414 IRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp ----------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555655555544444433
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.59 E-value=60 Score=22.26 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHH
Q psy4658 88 LAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVK 161 (182)
Q Consensus 88 L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k 161 (182)
|......|-..|.. +.++..++..|..++.+...++..=..++++...+.-..-.+.+++.+-+.+..+.+-.-
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433 566677777778888888888888888888888888777777777777777665554433
No 52
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.21 E-value=55 Score=28.15 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=28.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 114 NLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 114 ~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
.+..++..+...+..+....+.++.....+... .......+.+|..++.++.++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEI-------LIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcCCC
Confidence 344444444444444444444444444444444 444446777788888877654
No 53
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=43.94 E-value=16 Score=26.90 Aligned_cols=18 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4658 130 NKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 130 ~kEKk~lee~~~~~~~~l 147 (182)
..+++.+++++..+...+
T Consensus 22 e~~k~~Leek~~~~e~~~ 39 (130)
T 3cl3_D 22 TKECQALEGRARAASEQA 39 (130)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 54
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.78 E-value=1.1e+02 Score=26.23 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK 75 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~ 75 (182)
...++..+..+...+...+...+....++.+++..-...+..|..+++.-.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666666666677777766667777777776666666666666666543
No 55
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.13 E-value=88 Score=22.01 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHH
Q psy4658 76 SGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134 (182)
Q Consensus 76 ~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk 134 (182)
+.+.+.|+++..-.-+..+|.. +|.+.-.+|..|.+.+...++.++-+.++-+
T Consensus 2 dsL~EvEEKyrKAMVsnAQLDN------EKsal~YqVdlLKD~LEe~eE~~aql~Re~~ 54 (103)
T 4h22_A 2 DSLAEVEEKYKKAMVSNAQLDN------EKTNFMYQVDTLKDMLLELEEQLAESRRQYE 54 (103)
T ss_dssp ------CCTHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555555543 6888999999999999999999998887544
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.78 E-value=1.6e+02 Score=25.05 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=20.9
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQ 148 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~ 148 (182)
..+-+...++++..+.+..+++.++...+...+.+....++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 33334445555555555555555555555544444444443
No 57
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.70 E-value=80 Score=21.03 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=32.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658 116 NDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175 (182)
Q Consensus 116 ~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L 175 (182)
+-++..++..|.+|..++..++..+....- .+..-+++..+..-...++..|+.+.++.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~-y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASF-FSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777766654433210 01123445555555566666666665554
No 58
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.72 E-value=1.2e+02 Score=26.07 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKS 76 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~ 76 (182)
.+.|+..+.+.+.++.............+.+++.+...++..|..+++.-.+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555555555555555555555555555555555555555555555554443
No 59
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.49 E-value=51 Score=29.76 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101 (182)
Q Consensus 27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e 101 (182)
..|..++++...+.+.|.+.+..-..|+++......+...|...-..-.......+.....-...+..|+..+.+
T Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 342 DRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666555555555444333222222222233333333444456555544
No 60
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.13 E-value=91 Score=20.74 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 49 ARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 49 ~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
....|+..+..|..++..|..+|..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445556666666666666666654
No 61
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=36.76 E-value=43 Score=22.38 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=9.9
Q ss_pred HHhhHHHHHHhHHHHh
Q psy4658 164 LEQTLDELEDSLEREK 179 (182)
Q Consensus 164 le~~l~dlE~~Le~Ek 179 (182)
.+.+|||||+.|..++
T Consensus 42 ~EKTIDDLEDkL~~eK 57 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3666677776665554
No 62
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.99 E-value=1e+02 Score=20.99 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=15.9
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l 147 (182)
+..|...+..++..|..|.+....++....++...|
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 63
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.96 E-value=61 Score=18.42 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy4658 51 KEVEALNAKLLEEKTTLLKNLEGEKSGL 78 (182)
Q Consensus 51 kelE~k~~~L~~EK~~L~~qLq~E~~~l 78 (182)
..||.+...|+.++..|..++..-+..+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3456666666666666665554444433
No 64
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=35.30 E-value=1.3e+02 Score=22.14 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658 22 KQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 22 ~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
+...++.|..++..++.++....-......+...+++-+..+ |.-+++++........+|+..|.
T Consensus 47 ~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~d--------------LeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD--------------LERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877777766666666666655443 34557777777777777777664
No 65
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.69 E-value=1.2e+02 Score=22.06 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=20.3
Q ss_pred hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTA 144 (182)
Q Consensus 105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~ 144 (182)
..-.+.++..++..+..+...+..+......++..++++.
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555444444443
No 66
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=33.48 E-value=1.3e+02 Score=21.39 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLE---EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL 99 (182)
Q Consensus 29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~---EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l 99 (182)
+..+...+..+.+.|......+.++.....+... ...-|..|..--...+..--.-+.++...|.+|..++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 3444444444444444444444444433333222 3444444544444444333344555555555555554
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.71 E-value=1.3e+02 Score=21.04 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q psy4658 79 SSIQERAAKLAAQKADLETQLA 100 (182)
Q Consensus 79 ~e~Ee~~~~L~~~K~eLE~~l~ 100 (182)
...+-.+.+|...+..||.+|.
T Consensus 22 ~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 22 EELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3335556666666666666663
No 68
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.51 E-value=67 Score=18.92 Aligned_cols=25 Identities=16% Similarity=0.450 Sum_probs=13.5
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKE 132 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kE 132 (182)
+|.+++.|+...+.+++.|+-|+.|
T Consensus 8 LE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555544
No 69
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=31.25 E-value=1.4e+02 Score=21.16 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy4658 36 VAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGL 78 (182)
Q Consensus 36 l~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l 78 (182)
.+.|+....+....+..+-.++.+...+-+.....||.+...+
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l 47 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666555555555555444443
No 70
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=29.22 E-value=1.2e+02 Score=19.86 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
..+++..++.++..+++.+.-.-+....|-..+.++.=|-|-|+..|+.
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 6689999999999999999888888888889999999999998877754
No 71
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.55 E-value=1.2e+02 Score=19.22 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4658 34 EKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE 74 (182)
Q Consensus 34 eel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E 74 (182)
.+|-.+|..|..++++...|=.=+..+..|...++..++.-
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 46788899999999999888888888888888887766543
No 72
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.28 E-value=1.4e+02 Score=19.97 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKT 65 (182)
Q Consensus 31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~ 65 (182)
.++..+..+-+...--.-...+|..++..|.++..
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~ 44 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444333
No 73
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.26 E-value=1.4e+02 Score=19.69 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=19.1
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKTA 144 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~ 144 (182)
|..|++.+..+...|.+|....+.+-+++..+.
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777777766666665554433
No 74
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.98 E-value=1.3e+02 Score=19.44 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=18.0
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTA 144 (182)
Q Consensus 109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~ 144 (182)
+..|+.|+..+..++..+..+..+-..|-..+..+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444444433
No 75
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.65 E-value=94 Score=17.31 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy4658 52 EVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 52 elE~k~~~L~~EK~~L~~qLq~ 73 (182)
.||++...|..++..|..++..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3555555566666655544443
No 76
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.50 E-value=1.6e+02 Score=19.81 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=36.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658 25 LELRQQKL---EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73 (182)
Q Consensus 25 ~eeEl~~~---eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~ 73 (182)
-+.||.++ -+++.+++..+--.+.+.++.+.++..|..+...|..++..
T Consensus 19 LeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 19 LEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666654 56777788877777888888888888888887777777665
No 77
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=24.96 E-value=1.8e+02 Score=20.39 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q psy4658 33 EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQI 112 (182)
Q Consensus 33 eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~ki 112 (182)
......+...|..........+.++..|...+.++..++.........+.. +
T Consensus 18 ~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~----------------------------l 69 (150)
T 3ajw_A 18 EKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNR----------------------------W 69 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHH----------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----------------------------H
Confidence 334445566666666777777777777777777776666543322222222 2
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhh
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~ 167 (182)
..+..=+..++..|.........++..+......+..-.-..+.+.+++.+-...
T Consensus 70 ~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~ 124 (150)
T 3ajw_A 70 INYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAA 124 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444445555555555555555555556666666555666666666554443
No 78
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.82 E-value=1.6e+02 Score=19.84 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 36 VAQTEASLAREEKARKEVEALNAKLLEEK 64 (182)
Q Consensus 36 l~~lke~l~k~e~~rkelE~k~~~L~~EK 64 (182)
++.|.+.|+-=..+..-||..+..|..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i 39 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAEL 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 79
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=24.09 E-value=1.4e+02 Score=18.91 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTT 66 (182)
Q Consensus 25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~ 66 (182)
.-.++..+..+.+.++.-++.+...|+.||.-.-+++...|+
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 346778888899999999999999999999999888887664
No 80
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=23.94 E-value=88 Score=17.93 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHhhHH
Q psy4658 140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLD 169 (182)
Q Consensus 140 ~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~ 169 (182)
.+.+.+.|+.==+||..|......|+..|.
T Consensus 8 mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 8 LQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666778888777777777664
No 81
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.54 E-value=1.4e+02 Score=18.61 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=14.3
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHH
Q psy4658 110 HQIRNLNDEIAHQDELINKLNKEKKQA 136 (182)
Q Consensus 110 ~kik~l~~el~~~~e~i~KL~kEKk~l 136 (182)
.++..|+.+...+...|+.|..|...|
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555544
No 82
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=23.25 E-value=2.5e+02 Score=21.34 Aligned_cols=56 Identities=5% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy4658 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA 85 (182)
Q Consensus 30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~ 85 (182)
.+.-..|..+-..+.........+=+.+..+.+|...-...+.|..+...=.++.|
T Consensus 13 e~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~ 68 (170)
T 3l4q_C 13 EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555666666666666666666666666666666666655
No 83
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.15 E-value=2.2e+02 Score=24.41 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=33.8
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~ 174 (182)
..|++++..+.+.+..+....+.+...+..+.+.|. .....+.+|..++.|+.++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-------~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF-------QSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCC
Confidence 455666666666666666666655555555555544 3446677777777777543
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.50 E-value=2e+02 Score=19.35 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=25.9
Q ss_pred HhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 8 KESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLE 72 (182)
Q Consensus 8 ~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq 72 (182)
+.|..|=|.+--.. .++-+..++.....+...+. .++.+...+..+.+.+...|+
T Consensus 54 ~vy~~iG~vfv~~~---~~ea~~~L~~~~e~ie~~i~-------~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 54 VVYKTVGTLIVKTT---KDKAVAELKEKIETLEVRLN-------ALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp CEEEEETTEEEEEC---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHhhcc---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555455 44445555544444444444 444444444444444444443
No 85
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.48 E-value=2.3e+02 Score=19.91 Aligned_cols=52 Identities=8% Similarity=0.171 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy4658 32 LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQE 83 (182)
Q Consensus 32 ~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee 83 (182)
+..++...+.....-.....+|......+..|+.-.+..|+.--..|.+..+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455556667777777778888777777776666666544
No 86
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.20 E-value=1.3e+02 Score=16.87 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4658 51 KEVEALNAKLLEEKTTLLKNLEGEK 75 (182)
Q Consensus 51 kelE~k~~~L~~EK~~L~~qLq~E~ 75 (182)
+.++++...|..++.+|..++..-+
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566677777777777766554433
No 87
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.04 E-value=1.3e+02 Score=16.85 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy4658 52 EVEALNAKLLEEKTTLLKNLEGE 74 (182)
Q Consensus 52 elE~k~~~L~~EK~~L~~qLq~E 74 (182)
.||++...|..++..|...+..-
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHH
Confidence 45666666666666665554433
Done!