Query psy4658
Match_columns 182
No_of_seqs 123 out of 299
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 22:28:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4658.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4658hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 69.5 12 0.00086 24.4 9.3 30 113-142 68-97 (107)
2 d1x4ta1 a.2.15.1 (A:7-86) Pre- 49.8 13 0.00094 23.5 4.5 26 118-143 47-72 (80)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 37.0 50 0.0037 21.5 11.8 31 108-138 93-123 (133)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 16.7 1.2E+02 0.0088 18.9 5.1 48 7-57 48-95 (107)
5 d1seta1 a.2.7.1 (A:1-110) Sery 13.5 1.5E+02 0.011 18.4 8.6 29 43-71 30-58 (110)
6 d2azeb1 e.63.1.2 (B:201-301) T 12.9 1.6E+02 0.011 18.6 4.8 33 113-145 4-36 (101)
7 d1fs1b1 a.157.1.1 (B:86-140) C 8.5 53 0.0039 18.7 0.9 20 2-21 16-35 (55)
8 d1wu9a1 a.245.1.1 (A:191-249) 6.3 2.5E+02 0.018 16.0 3.5 22 28-49 2-23 (59)
9 d1nkpb_ a.38.1.1 (B:) Max prot 5.7 2.9E+02 0.021 16.0 3.6 32 112-143 49-80 (83)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 5.6 3.5E+02 0.026 16.8 6.2 43 107-149 85-127 (133)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=69.47 E-value=12 Score=24.35 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=11.9
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQK 142 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~ 142 (182)
..+...+..++..|..|.+....++.....
T Consensus 68 ~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~ 97 (107)
T d1fxka_ 68 EELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433333333
No 2
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.84 E-value=13 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4658 118 EIAHQDELINKLNKEKKQAGEVTQKT 143 (182)
Q Consensus 118 el~~~~e~i~KL~kEKk~lee~~~~~ 143 (182)
.+..+.|.|++|-++|.+++-++..|
T Consensus 47 ~IRdLNDeINkL~reK~~WE~rI~eL 72 (80)
T d1x4ta1 47 RIRDLNDEINKLLREKGHWEVRIKEL 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555677899999999999887664
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.96 E-value=50 Score=21.53 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=12.7
Q ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy4658 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGE 138 (182)
Q Consensus 108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee 138 (182)
.+.+++.++..+..+...+.++......+..
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~ 123 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333333
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.72 E-value=1.2e+02 Score=18.95 Aligned_cols=48 Identities=15% Similarity=0.024 Sum_probs=22.2
Q ss_pred hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALN 57 (182)
Q Consensus 7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~ 57 (182)
++.|--|=|.|.-.. .++-+..+...+..+...+.+.+...+.++.++
T Consensus 48 ~~vyk~vG~vLv~~~---~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l 95 (107)
T d1fxka_ 48 AEVYKSSGNILIRVA---KDELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp CCEEEEETTEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhcchhhcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666654444 444444444444444444444433343333333
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=13.51 E-value=1.5e+02 Score=18.43 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 43 LAREEKARKEVEALNAKLLEEKTTLLKNL 71 (182)
Q Consensus 43 l~k~e~~rkelE~k~~~L~~EK~~L~~qL 71 (182)
+-.....|+++......|..++|.+..++
T Consensus 30 i~~ld~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 30 LLALDREVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677777777777777776665
No 6
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.91 E-value=1.6e+02 Score=18.64 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=14.2
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE 145 (182)
Q Consensus 113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~ 145 (182)
..|+.++..+...-..|..-+..+...+..+++
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~lte 36 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444444444444433
No 7
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.54 E-value=53 Score=18.68 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=17.4
Q ss_pred hhHhhhHhhhhcCcchhhhh
Q psy4658 2 VDLLAAKESFKGDPNAILTR 21 (182)
Q Consensus 2 ~~~~~~~~~~kvkPlL~~~~ 21 (182)
.||+.|--|.-|+|||..+-
T Consensus 16 f~Li~AAnyL~I~~Lldl~c 35 (55)
T d1fs1b1 16 FELILAANYLDIKGLLDVTC 35 (55)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHH
Confidence 57888999999999998874
No 8
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.35 E-value=2.5e+02 Score=15.95 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4658 28 RQQKLEEKVAQTEASLAREEKA 49 (182)
Q Consensus 28 El~~~eeel~~lke~l~k~e~~ 49 (182)
++..+..++..++..+.-.++.
T Consensus 2 e~~~L~~ei~elk~~v~~lEkE 23 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKE 23 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444443333
No 9
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.73 E-value=2.9e+02 Score=16.00 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy4658 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKT 143 (182)
Q Consensus 112 ik~l~~el~~~~e~i~KL~kEKk~lee~~~~~ 143 (182)
|+.|......+...+..+..+-..+...++.+
T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.60 E-value=3.5e+02 Score=16.83 Aligned_cols=43 Identities=5% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149 (182)
Q Consensus 107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~ 149 (182)
+.+.-+..+...+..+...+.++......+...+..+...++.
T Consensus 85 ~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~ 127 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!