RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4658
(182 letters)
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 42.8 bits (101), Expect = 4e-05
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 1/178 (0%)
Query: 4 LLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEE 63
L E + + + LE ++L+E++ + E L E+A +++ +L E+
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
Query: 64 KTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQ 122
+ L + LE + L + R L + LE + +Q+ + +I L +++
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847
Query: 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
+E + +L KE ++ E ++ E + ED++ L + K +LE+ L ELE L K+
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905
Score = 40.9 bits (96), Expect = 2e-04
Identities = 42/178 (23%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Query: 3 DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62
L S + + + + LE + ++L+ ++A E L + + +E+E +L E
Sbjct: 692 SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751
Query: 63 EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQ 122
E L + LE + L S++E AKL + +LE + A Q++ + L +E+
Sbjct: 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE------LEELEEELEEA 805
Query: 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
+ ++ L +E + + ++ +E++ E+++ L + +LE+ L+ELE LE K+
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863
Score = 35.1 bits (81), Expect = 0.018
Identities = 41/182 (22%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Query: 3 DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62
+L +E I + + L +++LEE + E R E+ ++++EAL +L E
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341
Query: 63 EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATK--------DHQIRN 114
+T L + + + +E KL+A +LE A +++ + +++
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401
Query: 115 LNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174
L EI +E + +L++ + E ++ EL+ + ++ LN+ +LE+ L+EL D
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461
Query: 175 LE 176
L+
Sbjct: 462 LK 463
Score = 33.5 bits (77), Expect = 0.060
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS 80
+ LE ++LE+++ + + L E ++E+E +L EEK L + L +S L+
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
Query: 81 IQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDEL---INKLNKEKKQAG 137
++E KL + +LE +L + + + + E + EL I +L +E + G
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
Query: 138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
V + EE + E++ L + LE+ ++L + +E K +
Sbjct: 963 PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007
Score = 30.5 bits (69), Expect = 0.48
Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 5/164 (3%)
Query: 18 ILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSG 77
+ L+ ++L E++ + + L ++ +E+E + L E L LE +
Sbjct: 265 AEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324
Query: 78 LSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAG 137
L ++E K+ A K +LE + ++ ++ +E +++L L + ++
Sbjct: 325 LEELKE---KIEALKEELEERETLLEELEQLLAELEEAKEE--LEEKLSALLEELEELFE 379
Query: 138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
+ ++ AE + N L ++K ++E + LE ER + L
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDL 423
Score = 27.4 bits (61), Expect = 6.1
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 18 ILTRKQILELRQQKLEEKVAQTEASLAREEKAR----KEVEALNAKLLEEKTTLLKNLEG 73
+L + + L ++LEE++++ E L ++ KE+E L ++L E + L +
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL--- 286
Query: 74 EKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEK 133
QE +L + +LE +++ +++ + L + +EL K+ K
Sbjct: 287 --------QEELLELKEEIEELEGEISLLRERL--EELENELEELEERLEELKEKIEALK 336
Query: 134 KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
++ E E Q + L + K +LE+ L L + LE +
Sbjct: 337 EELEERETLLEELEQLLAE----LEEAKEELEEKLSALLEELEELFE 379
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 38.1 bits (89), Expect = 0.001
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 15/170 (8%)
Query: 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
LE ++LEE++ + E LA E +E+EA +L EE L + L+ ++ L+ + E
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Query: 85 AAKLAAQKADLETQLAA--------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
AA L + LE ++AA ++ I +L EI +ELI +L E +
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
Query: 137 GEVTQKTAEELQAAED-------KVNHLNKVKAKLEQTLDELEDSLEREK 179
E L ++ L +++L + L+EL + L + +
Sbjct: 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
Score = 38.1 bits (89), Expect = 0.002
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS 80
+L LR ++L E++ + + L E+ +E+ A +L E+ L + + +
Sbjct: 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
Query: 81 IQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
+Q+ LA + + LE Q + A + Q+ L ++ + +++L +E + E
Sbjct: 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
Query: 140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
++ EEL++ E ++ L +LE L+ELE+ LE +
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
Score = 35.0 bits (81), Expect = 0.015
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
+LEEK+ + E +A EKA E+ +L EE L K LE +S++++ A+L A
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
Query: 91 QKADLETQLA--------ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQK 142
+ LE ++A + + + ++ +E+A + I +L + +Q E +
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
Query: 143 TAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
E L ++ LN+ A L + L+ LE + ++
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
Score = 33.5 bits (77), Expect = 0.047
Identities = 32/182 (17%), Positives = 74/182 (40%), Gaps = 8/182 (4%)
Query: 2 VDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLL 61
L E +A+ LE ++LEE++AQ L E +E+E +
Sbjct: 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
Query: 62 EEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQ-IRNLNDEIA 120
EE +E ++ + ++E L +L +L ++A + + +L IA
Sbjct: 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
Query: 121 HQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
+ + L ++ ++ +E++++ ++ L ++ +LE L+ L + ++
Sbjct: 835 ATERRLEDLEEQIEEL-------SEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
Query: 181 LR 182
Sbjct: 888 AL 889
Score = 30.4 bits (69), Expect = 0.60
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS---- 80
E ++L ++ + E L E+E + +EE L L E S L
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELE----EEIEELQKELYALANEISRLEQQKQI 306
Query: 81 IQERAAKLAAQKADLETQLAADQ--------DKATKDHQIRNLNDEIAHQDELINKLNKE 132
++ER A L Q +LE QL + + A + ++ L +E+ + + +L E
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
Query: 133 KKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177
++ ++ E+L+ KV L A L ++ LE LER
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
Score = 29.3 bits (66), Expect = 1.2
Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 11/186 (5%)
Query: 2 VDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLL 61
+E + + LE + KL+E + + E+ ++E+E+L A+L
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
Query: 62 EEK----------TTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQ 111
E + L + LE +S ++ ++ + A L + LE +L +D+ + Q
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
Query: 112 IRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDEL 171
+ + EL +L E ++ E ++ EEL+ E+ + L + + EQ LD
Sbjct: 422 EIEELLKKLEEAEL-KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
Query: 172 EDSLER 177
E L +
Sbjct: 481 ERELAQ 486
Score = 28.5 bits (64), Expect = 2.4
Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
LE + L + A E +LA +E+ +L +++ L + LE + L+ ++ R
Sbjct: 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930
Query: 85 AAKLAAQKADLETQLAADQDKATKDHQIRNLN---DEIAHQDELINKLNKEKKQAGEVTQ 141
L + +L+ +L+ + T + N D+ + +L + K+ G V
Sbjct: 931 LEGLEVRIDNLQERLSEEY-SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNL 989
Query: 142 KTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177
EE + +++ + L K L + + LE+++E
Sbjct: 990 AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 34.2 bits (79), Expect = 0.032
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS 80
R + LE + LEE+V + E L R E E E +L E + L + + + +
Sbjct: 476 RVEELEAELEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEE 534
Query: 81 IQERAAKLAAQKADLETQLAADQDKATKDHQ--------IRNLNDEIAHQDELINKLNKE 132
+ERA +L + A+LE + ++ A + + + LN ++A E I L +
Sbjct: 535 KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERI 594
Query: 133 KKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELED 173
+ + +E++ +K L ++ + + L E +
Sbjct: 595 RTLLAAIADAE-DEIERLREKREALAELNDERRERLAEKRE 634
Score = 31.5 bits (72), Expect = 0.20
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 33 EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTL--LKNLEGEKSGLSSIQERAAKLAA 90
EEK + E+AR+EV LN+KL E K + L+ + + ++ ++ +L
Sbjct: 554 EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLRE 613
Query: 91 QKADLETQLAADQDK-ATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA 149
++ L +++ A K + R L E + I + ++K++A E ++ E+L
Sbjct: 614 KREALAELNDERRERLAEKRERKRELEAE--FDEARIEEAREDKERAEEYLEQVEEKLDE 671
Query: 150 AEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
++ + L +E L+ELE+ ER + L
Sbjct: 672 LREERDDLQAEIGAVENELEELEELRERREAL 703
Score = 27.3 bits (61), Expect = 5.4
Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Query: 21 RKQILELRQQ--KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGL 78
+++ +LR++ +LEE+ A ++ + VEA +L + L LE +
Sbjct: 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA 337
Query: 79 SSIQERAAKLAAQKADLETQLAADQDKA-TKDHQIRNLNDEIAHQDELINKLNKEKKQAG 137
+ E A L DLE + +++A + ++ + + + E I +L +E ++
Sbjct: 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELR 397
Query: 138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
E +L AED + L + + +L + ELE +L ++
Sbjct: 398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE 440
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 33.5 bits (77), Expect = 0.052
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE------ 74
R LE KL ++ + E + E K R ++ A+L EE L LE
Sbjct: 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
Query: 75 -KSGLSSIQERAAKLAAQKADLETQLAADQDKATKDH-QIRNLNDEIAHQDELINKLNKE 132
+ L +E+ KL + +L+ +L Q++ + ++ +LN IA + IN+L +E
Sbjct: 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
Query: 133 KKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
K+ +K +L+ ++ + L++ D +E L + ++
Sbjct: 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
Score = 31.6 bits (72), Expect = 0.21
Identities = 32/161 (19%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 22 KQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKL------LEEKTTLLKNLEGEK 75
Q L +K+ E + E EEK ++ +E L L +E + LK LE
Sbjct: 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767
Query: 76 SGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
L +E KL DLE +L+ + ++ L +E++ + + ++ ++ +
Sbjct: 768 EEL---EEDLHKLEEALNDLEARLSHSRIP-EIQAELSKLEEEVSRIEARLREIEQKLNR 823
Query: 136 AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176
+ +E+Q +++ L + +E+ ++ L E
Sbjct: 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
Score = 30.8 bits (70), Expect = 0.47
Identities = 30/179 (16%), Positives = 71/179 (39%), Gaps = 20/179 (11%)
Query: 21 RKQILELRQQKLEEKVAQTEASLARE-------------------EKARKEVEALNAKLL 61
R + LE KLEE + EA L+ E +E+E +L
Sbjct: 766 RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
Query: 62 EEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIA 120
EK L K ++ + ++E+ + + +L + +++ + +R+L +
Sbjct: 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
Query: 121 HQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREK 179
+ ++L + ++ ++ +++ +++ L LE+ L E+ED ++
Sbjct: 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
Score = 29.7 bits (67), Expect = 0.91
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 4 LLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEA-LNAKLLE 62
LL KE+ + AI + LE +KL E++++ E L E+ +E+ + E
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287
Query: 63 EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQ 122
E+ + + + ++ ++S++ A+ + D E +LA + +I L EI
Sbjct: 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA------EIDKLLAEIEEL 341
Query: 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
+ I + K + + E + EEL ED L +V + +T DEL+D E+ +KL
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEEL---EDLRAELEEVDKEFAETRDELKDYREKLEKL 397
Score = 28.9 bits (65), Expect = 1.7
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 16 NAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK 75
K+ LE + +LEE + + + R+++E L ++ E K
Sbjct: 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE--------- 407
Query: 76 SGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
L +QE +L+ + ADL +A + K + L +E + I K + +Q
Sbjct: 408 --LDRLQEELQRLSEELADLNAAIAGIEAKINE------LEEEKEDKALEIKKQEWKLEQ 459
Query: 136 AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELE 172
K +EL +++ + + K +KL++ L E E
Sbjct: 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
Score = 28.9 bits (65), Expect = 1.7
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 10/188 (5%)
Query: 5 LAAKESFKGDPNAILTRKQILELRQQ--KLEEKVAQTEASLAREEKARKEVEALNAKLLE 62
L K G+ + +++I EL + LE +A+ E L E+ ++EA KLL
Sbjct: 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
Query: 63 EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKA------TKDHQ--IRN 114
E L + +E E+ + E A+L + DL +L + KD++ +
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
Query: 115 LNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS 174
L EI +++L +E ++ E + E K+N L + K + + E
Sbjct: 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
Query: 175 LEREKKLR 182
LE+
Sbjct: 457 LEQLAADL 464
Score = 27.7 bits (62), Expect = 4.3
Identities = 33/193 (17%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKL------LEEKTTLLKNLEGE 74
E +++++E Q + + KE+E LN K LEE L++LE
Sbjct: 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
Query: 75 KSGLSS-IQERAAKLAAQKADLETQLAADQDKATKDHQ----IRNLNDEIAHQDELIN-- 127
L E A+L + +E A + K + + + L +E++ ++
Sbjct: 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
Query: 128 -------------KLNKEKKQA-----GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLD 169
+ ++ + V +E + +++ L + +AKLE+
Sbjct: 944 EEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
Query: 170 ELEDSLEREKKLR 182
+ + +E +K +
Sbjct: 1004 AILERIEEYEKKK 1016
Score = 27.7 bits (62), Expect = 4.5
Identities = 27/165 (16%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 22 KQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI 81
L+ +++E ++ + L+ + E+E +L +E+ L + LE + LSS+
Sbjct: 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
Query: 82 QERAAKLAAQKADLETQLAADQDKATK-DHQIRNLNDEIAHQ-----DELINKLNKEKKQ 135
++ + ++ +LE ++ ++ K + + +L ++H ++KL +E +
Sbjct: 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR 809
Query: 136 AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
++ ++L + +L K +L++ +L++ ++ +K
Sbjct: 810 IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854
Score = 27.0 bits (60), Expect = 7.0
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 29 QQKLEEKVAQTEASLAREEKARKEVEA-LNAKLLEEKTTLLKNLEGEKSGLSSIQERAAK 87
++LE ++ + E L + E+A ++EA L+ + E L LE E S + + R +
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL-REIE 818
Query: 88 LAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147
+ LE + +++ Q +L ++I ++ I LN +K++ E ++ L
Sbjct: 819 QKLNRLTLEKEYL-EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
Query: 148 QAAEDKVNHLNKVKAKLEQTLDELEDSLE 176
+ E ++ L K + +LE L ELE +E
Sbjct: 878 RDLESRLGDLKKERDELEAQLRELERKIE 906
Score = 27.0 bits (60), Expect = 8.1
Identities = 29/159 (18%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89
Q+L E++ + L+ + + +E +L +E + + + + + +++ KL
Sbjct: 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK 736
Query: 90 AQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNK-----EKKQAGEVTQKT 143
+ +LE L++ +Q+ +++ L I +E ++KL + E + + +
Sbjct: 737 ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI 796
Query: 144 AEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
EL E++V+ + ++EQ L+ L E +K
Sbjct: 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 33.3 bits (76), Expect = 0.062
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 18 ILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSG 77
I+T + EL + E K +T E KARK+ A + E + E +
Sbjct: 316 IITPWRAPELHAENAEIKKTRTAEK--NEAKARKKEIAQKRRAAEREINREARQERAAAM 373
Query: 78 LSSIQERAAKLAAQKADLETQLAADQDKATKDH 110
+ RAA A +K ++ D ++
Sbjct: 374 ARARARRAAVKAKKKGLIDASPNEDTPSENEES 406
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 32.6 bits (75), Expect = 0.088
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 97 TQLAADQDKATKDHQIRNLNDEIAHQDELINKLNK-----EKKQAGEVTQKTAEELQAAE 151
T++ D +++ L +E+ +E + K+ K KK G++ + E+L+
Sbjct: 321 TEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLL 380
Query: 152 DKVNHLNKVKAKLEQTLDELEDSLEREKK 180
+ L++ +LE+ L EL++ LE
Sbjct: 381 ETKEKLSEELEELEEELKELKEELESLYS 409
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 32.7 bits (75), Expect = 0.095
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Query: 33 EEKVAQTEASLAR-EEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI-QERAAKLAA 90
++ + EA L K + + K L ++LE L++I +E+ + AA
Sbjct: 358 RSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAA 417
Query: 91 QKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAA 150
+ DL+ + Q + + N+E + EL +L + K++ T T EEL+
Sbjct: 418 IEEDLQALES--QLRQQLEAGKLEFNEE---EYELELRLGRLKQRLDSATA-TPEELEQL 471
Query: 151 EDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
E L K + + EQ +E ++LR
Sbjct: 472 EINDEALEKAQEEQEQAEANVEQLQSELRQLR 503
Score = 31.6 bits (72), Expect = 0.21
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKL 88
+ +L E++ Q E +L +K+ E E+ LE +K + A+
Sbjct: 602 ETELRERLQQAEEALQSAVAKQKQAE-------EQLVQANAELEEQKRAEAE-----ART 649
Query: 89 AAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQ 148
A ++A L+ Q ++ ++ KD + + + + +L+ + KQ E Q E L+
Sbjct: 650 ALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALK 709
Query: 149 AAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
+D + AK + EL++ L +
Sbjct: 710 --DDFRELRTERLAKWQVVEGELDNQLAQLSAA 740
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 32.7 bits (75), Expect = 0.10
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 9/158 (5%)
Query: 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
LE +KLEE + E L EK EVE L KT+LL+
Sbjct: 506 LEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPV 565
Query: 85 AAKLAAQKADLE---------TQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
A+ A +A E A + KD + + L + + +L +++ +
Sbjct: 566 PAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRKLKLGDEVEVITGE 625
Query: 136 AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELED 173
G V + A L+A V + + E
Sbjct: 626 PGAVVKIIAGILEALVQSGILKVIVSHLDLEIIKEEPK 663
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 32.3 bits (74), Expect = 0.12
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 18/156 (11%)
Query: 18 ILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSG 77
+ R IL +KLE ++ E+ K E ++++ E L + L
Sbjct: 76 LEGRLFILPEEVEKLEAELKS-------LEEVIKPAEKFSSEVEELTRKLEERLSELDEE 128
Query: 78 LSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINK-LNKEKKQA 136
L +++ +L L+ + K +R L + E + + E
Sbjct: 129 LEDLEDLLEELEPLA-YLDF--DLSLLRGLKFLLVR-LGLVRREKLEALVGVIEDEVALY 184
Query: 137 GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELE 172
GE + + + V H + K+ + L+EL
Sbjct: 185 GENVEASVVIV------VAHGAEDLDKVSKILNELG 214
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 32.1 bits (73), Expect = 0.15
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 74 EKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEK 133
+ + +Q AA++ Q ++ +L +K D Q R I + L ++
Sbjct: 67 RQHATTEMQVTAAQMQKQYEEIRRELDV-LNKQRGDDQRR-----IEKLGQDNAALAEQV 120
Query: 134 KQAGEVTQKTAEE 146
K G E
Sbjct: 121 KALGANPVTATGE 133
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 31.9 bits (73), Expect = 0.17
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 17 AILTRKQILE-LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK 75
A L LE Q L++ VA ASL+ E R ++AL A+L
Sbjct: 63 AELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
Query: 76 SGLSSIQERAAKLAAQKADLETQLAA 101
L S ++ +A+ AQ L Q+AA
Sbjct: 123 QELDSEKQVSARALAQVELLNQQIAA 148
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.6 bits (72), Expect = 0.24
Identities = 30/165 (18%), Positives = 72/165 (43%), Gaps = 4/165 (2%)
Query: 17 AILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKS 76
+L + +L E++ + E + E+ ++E+E L +E +L + +
Sbjct: 204 EVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE----KELESLEGSKRKLEE 259
Query: 77 GLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
+ ++ER +L + +LE ++ ++ K + L++ + + ++ K +
Sbjct: 260 KIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
Query: 137 GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
E E ++ E+K L ++K KL++ LE+ ER +
Sbjct: 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY 364
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 31.1 bits (71), Expect = 0.29
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 101 ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQ-KTAEELQAAEDKVNHLNK 159
+Q T D +I ++ +I ++ I + K+ + Q K E ++ A+ + +
Sbjct: 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEE 238
Query: 160 VKAKLEQTLDELEDSLEREKKLR 182
+ +L + ++ED KL
Sbjct: 239 LTDELLNLVMDIEDPSAALNKLN 261
Score = 28.8 bits (65), Expect = 1.8
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 95 LETQLAADQDKATKDHQIRNLNDEIAHQDELIN----KLNKEKKQAGEVTQKTAEELQAA 150
L+ + ++ DK KD +IR LN +I D I+ ++ K E +K E +
Sbjct: 160 LDISVLSEMDKLNKD-KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARK 218
Query: 151 EDKVNHLNKVKAKLEQTLDELEDSLE 176
++K + L + ++ ++EL D L
Sbjct: 219 QNKYDELVEEAKTIKAEIEELTDELL 244
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 30.8 bits (69), Expect = 0.40
Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 6/170 (3%)
Query: 19 LTRKQILELRQQKL--EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLL---KNLEG 73
R+++ RQ ++++A+ + K + +L + +L K L+
Sbjct: 120 AVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQA 179
Query: 74 EKSGLSSIQERAAKLAAQKADLETQLAADQDKA-TKDHQIRNLNDEIAHQDELINKLNKE 132
+ L S +AQ LA + A + ++ + I + + +
Sbjct: 180 SATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQ 239
Query: 133 KKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
Q + AE+++ E ++ L +A+LEQ + +LE + +LR
Sbjct: 240 ISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLR 289
Score = 30.8 bits (69), Expect = 0.43
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 8/142 (5%)
Query: 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA 85
E R + E + A++E AR+E R+ V A + + L +Q R
Sbjct: 96 EKRAAETEREAARSELQKARQE--REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL 153
Query: 86 AKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE 145
LA Q+ LE Q + Q + L + L Q + Q A
Sbjct: 154 KTLAEQRRQLEAQAQSLQA------SQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT 207
Query: 146 ELQAAEDKVNHLNKVKAKLEQT 167
AA+ + L + A +QT
Sbjct: 208 RANAAQARTEELARRAAAAQQT 229
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.0 bits (71), Expect = 0.40
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLERE 178
+ELI L + +++ + ++ L+ AE L + K KL++ D+L + E+E
Sbjct: 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 30.2 bits (69), Expect = 0.61
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQE- 83
LE +++LE+K + EA L EK ++E+E KL EE+ LL+ E E Q+
Sbjct: 525 LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE------AQQA 578
Query: 84 -RAAKLAAQKADLE-TQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQ 141
+ AK A + E QL + K H++ A + +NK N++K++ + +
Sbjct: 579 IKEAKKEADEIIKELRQLQKGGYASVKAHELIE-----ARKR--LNKANEKKEKKKKKQK 631
Query: 142 KTAEELQAAE 151
+ EEL+ +
Sbjct: 632 EKQEELKVGD 641
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.5 bits (68), Expect = 0.64
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS 80
+I E+ + EEK + E + EE K E A+ ++K LK E E+ +
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
Query: 81 IQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVT 140
++A + KA E + A + K K + + ++ E + K +E K+A E+
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKK--KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Query: 141 QKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
+K AEE + AE+ + K K E+ E E+ ++ ++ +
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Score = 29.7 bits (66), Expect = 0.96
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 13/190 (6%)
Query: 3 DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62
+ AA+E + K+ + ++K EEK EA EE +K E A +
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Query: 63 EKTTLLKNLEGEKSGLSSIQERA--------AKLAAQKADLETQLAADQDKATKDHQIRN 114
+K K EK +++A AK A++A + ++A K + +
Sbjct: 1418 KKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
Query: 115 LNDEIAHQDELINKLNKEKKQAGEV-----TQKTAEELQAAEDKVNHLNKVKAKLEQTLD 169
+E DE K + KK+A E +K A+E + AE+ KA+ + D
Sbjct: 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
Query: 170 ELEDSLEREK 179
E + + E++K
Sbjct: 1538 EAKKAEEKKK 1547
Score = 29.7 bits (66), Expect = 1.1
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
Query: 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKL 88
++K EE + +A+ + E+A+K EA A+ E ++ +E K
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
Query: 89 AAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQ 148
A K E + AD+ K K + + DE+ K ++ KK+A E + + +
Sbjct: 1381 DAAKKKAEEKKKADEAK-KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Query: 149 AAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
A E K K KA+ + +E + E KK
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 28.6 bits (63), Expect = 2.7
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 11/156 (7%)
Query: 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89
+K EEK EA EE + + A+ ++K K E + + A+ A
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 90 AQKADLETQLAADQDKAT-----KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTA 144
A +A+ + A +K K + +E DE K ++KK+A E+ + A
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA 1415
Query: 145 EELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
+ +A E K KA+ ++ DE + E KK
Sbjct: 1416 AKKKADE------AKKKAEEKKKADEAKKKAEEAKK 1445
Score = 27.4 bits (60), Expect = 5.4
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKL 88
+ K E+ L + E+ +K+VE L K EEK + + E+ E A K
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
Query: 89 AAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV--------- 139
K E A++D+ ++ +E +EL K +EKK+A E+
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Query: 140 ----TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
+K AEE + ++ + K K+ E E E +K
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 30.2 bits (68), Expect = 0.68
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKL--LEEKTTLLKNLEGEKSGL 78
R ++ L+QQK EE+ Q +EK +E++ L +L LE++ L E+ GL
Sbjct: 3 RDKLDMLQQQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERKFLVL---EQRGL 59
Query: 79 SSIQERAAKLAAQKA--DLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
S+ R + AD+ + + I+ EI+ EL+ LN +
Sbjct: 60 SANDLRTELSPPSNLLKTSDASHIADESQP---NSIKQKKREISPVKELV-PLNPNRIIK 115
Query: 137 GEVT 140
+ +
Sbjct: 116 DDKS 119
>gnl|CDD|239162 cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the
molybdenum/tungsten formylmethanofuran dehydrogenases,
subunit B (FmdB/FwdB), and other related proteins.
Formylmethanofuran dehydrogenase catalyzes the first
step in methane formation from CO2 in methanogenic
archaea and some eubacteria. Members of this CD belong
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 415
Score = 30.0 bits (68), Expect = 0.70
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 20 TRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKN 70
L++ E +A A L EV + A+ + E LKN
Sbjct: 184 LADIHLQIDPGSDYELLAALRALLRGAGLVPDEVAGIPAETILELAERLKN 234
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 30.0 bits (68), Expect = 0.70
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA 101
LL L +G + +ER A +AA+K+ E +L++
Sbjct: 328 LLARLAERLAGDAGREERKALIAAEKSAWEQELSS 362
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 30.2 bits (68), Expect = 0.71
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 8/129 (6%)
Query: 7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTT 66
AK + I + L +++LE+K E L +EK +KE+E +L E +
Sbjct: 502 AKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561
Query: 67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELI 126
LE E QE L + + +L + K K +I+++ D + ++
Sbjct: 562 KKLELEKE------AQEALKALKKEVESIIRELK--EKKIHKAKEIKSIEDLVKLKETKQ 613
Query: 127 NKLNKEKKQ 135
K
Sbjct: 614 KIPQKPTNF 622
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 29.9 bits (68), Expect = 0.80
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 19 LTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGL 78
L R+ I++L ++ K + EAS R E KE+ L EE L + + EK+ +
Sbjct: 410 LDRR-IIQLEIEREALKKEKDEASKERLEDLEKELAELE----EEYADLEEQWKAEKAAI 464
Query: 79 SSIQERAAKLAAQKADLET-QLAADQDKA 106
IQ+ ++ + +LE + D KA
Sbjct: 465 QGIQQIKEEIEQVRLELEQAEREGDLAKA 493
>gnl|CDD|239472 cd03377, TPP_PFOR_PNO, Thiamine pyrophosphate (TPP family),
PFOR_PNO subfamily, TPP-binding module; composed of
proteins similar to the single subunit pyruvate
ferredoxin oxidoreductase (PFOR) of Desulfovibrio
Africanus, present in bacteria and amitochondriate
eukaryotes. This subfamily also includes proteins
characterized as pyruvate NADP+ oxidoreductase (PNO).
These enzymes are dependent on TPP and a divalent metal
cation as cofactors. PFOR and PNO catalyze the oxidative
decarboxylation of pyruvate to form acetyl-CoA, a
crucial step in many metabolic pathways. Archaea,
anaerobic bacteria and eukaryotes that lack mitochondria
(and therefore pyruvate dehydrogenase) use PFOR to
oxidatively decarboxylate pyruvate, with ferredoxin or
flavodoxin as the electron acceptor. The PFOR from
cyanobacterium Anabaena (NifJ) is required for the
transfer of electrons from pyruvate to flavodoxin, which
reduces nitrogenase. The facultative anaerobic
mitochondrion of the photosynthetic protist Euglena
gracilis oxidizes pyruvate with PNO.
Length = 365
Score = 29.5 bits (67), Expect = 0.82
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 44 AREEKARKEVEALNAKLLEEK-TTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA 100
R E+AR+ V+ L K+ +E+ TLL + + +ER AKL A + +LA
Sbjct: 82 QRRERARELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKDELA 139
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.5 bits (67), Expect = 0.92
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 131 KEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
K E+ + EEL+ E ++ L + ++LE + ELE +ER +
Sbjct: 79 VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG 130
Score = 28.0 bits (63), Expect = 3.7
Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 15/193 (7%)
Query: 1 MVDLL-AAKESFKGDPNAILT-RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNA 58
+D L + + LE + +EE++ + E + E+ E+E
Sbjct: 58 ALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIK 117
Query: 59 KLLEEKTTL---------LKNLEGEKS---GLSSIQERAAKLAAQKADLETQLAADQDKA 106
+L +E L L L G K + ++ E + ++D+E DK
Sbjct: 118 ELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKG 177
Query: 107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQ 166
+ L + +E + KL E+ + E +E ++ ++++ + K + L +
Sbjct: 178 YVYVVVVVLKELSDEVEEELKKLGFERLELEE-EGTPSELIREIKEELEEIEKERESLLE 236
Query: 167 TLDELEDSLEREK 179
L EL E
Sbjct: 237 ELKELAKKYLEEL 249
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 29.2 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
QD + ++QIR+LNDE INKL +EK+
Sbjct: 65 QDPSLGEYQIRDLNDE-------INKLFREKRH 90
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.5 bits (66), Expect = 1.2
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 20 TRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLS 79
T+ + +QK ++ + E L E +R E L EEK K E E + +
Sbjct: 462 TKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQ---LAEEKKR--KKEEEETAARA 516
Query: 80 SIQ------ERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEK 133
+ Q E A L K DLE ++ K H ++ +E ++ +L K +
Sbjct: 517 AAQAAASREECAESLKQAKQDLEMEI----KKLE--HDLKLKEEECRMLEKEAQELRKYQ 570
Query: 134 KQAGEVTQKTAEELQAAEDKVNHLNK 159
+ E T+ LQA +DK L
Sbjct: 571 ESEKE-TEVLMSALQAMQDKNLMLEN 595
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 29.1 bits (65), Expect = 1.2
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI---- 81
E + ++E A + + + + K++ A AKL + + L+ +K+ LS
Sbjct: 201 ETKASEVEHLSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELDAKKAELSKALAAL 260
Query: 82 -QERAAKLAAQKADLETQLAADQDKATK 108
AA Q D + AA A +
Sbjct: 261 EAANAADEDPQDRDAAVEAAARLMGAAR 288
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 29.2 bits (66), Expect = 1.2
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 22 KQILELRQQKLEEKVAQTEASLAR--EEKARKEVEALNAKLLEEKTTLLKNLEGE---KS 76
++I L+ Q K + + K + + E N KL E K + E K
Sbjct: 284 EKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKK 343
Query: 77 GLSSIQERAAKLAAQKADLE 96
+ ++ER KL Q D E
Sbjct: 344 QIERLEERIEKLEVQATDKE 363
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 29.1 bits (66), Expect = 1.3
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 22 KQILELRQQKLEEKVAQTEASLAREEKARKE---------VEALNAKLLEEKTTLLKNLE 72
K E RQ +LE + A EA + +AR + + AK ++
Sbjct: 452 KARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAG 511
Query: 73 GEKSGLSSIQERAAKLAAQK---ADLETQLAADQDKAT 107
+ I R A+ A + A+ + AAD KA
Sbjct: 512 ARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAA 549
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 29.1 bits (65), Expect = 1.3
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 2/117 (1%)
Query: 14 DPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG 73
I K+ + +Q + + SL EE +K + + L+ K LLK LE
Sbjct: 625 GLEVIGVTKKNKDTAEQTPPPNLQEKIESL-NEEINKKIERVIRSSDLKSKIELLK-LEV 682
Query: 74 EKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLN 130
K+ + K+ A + ++ ++A + + + L E+A E + N
Sbjct: 683 AKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARETAAESN 739
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.8 bits (65), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 20 TRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEK 64
TR++ E + K E+ Q EA +EEK ++E EA AKL E+
Sbjct: 264 TREEEEE-KILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 28.9 bits (66), Expect = 1.4
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 40 EASLAREEK----ARKEVEALNAKLLEEKTTLLKN-----LEGEKSGLSSIQERAAKLAA 90
EA LAR EK KE+E + KL E + +E E+ L+ +E+ AKL
Sbjct: 810 EAELARLEKELAKLEKEIERVEKKLSNEG--FVAKAPEEVVEKEREKLAEYEEKLAKLKE 867
Query: 91 QKADLE 96
+ A L+
Sbjct: 868 RLARLK 873
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 29.1 bits (65), Expect = 1.4
Identities = 18/105 (17%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 72 EGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNK 131
+ L++I + L+ + L+TQ+ + + + +Q + + L +N
Sbjct: 774 TNAAATLTNILTQVGTLSTTQTSLDTQIETLKTQQDRANQEAEAH---HADNSLETLIN- 829
Query: 132 EKKQAGEVTQKTAEELQAAEDKVN-HLNKVKAKLEQTLDELEDSL 175
AG +++A + + L+++ K +Q L ++SL
Sbjct: 830 ----AGF------TDIKAGQAALEAKLDEILGKQQQALAAAQESL 864
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory
protein. This family represents an accessory protein
that works with the bacteriocin maturation and ABC
transport secretion protein described by TIGR01193
[Transport and binding proteins, Other].
Length = 457
Score = 28.9 bits (65), Expect = 1.5
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 75 KSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134
+ ++S Q + A L A + K+ Q+ + EI ++ + +L + K
Sbjct: 249 QKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIK 308
Query: 135 QAGEVTQKTAEELQAAEDKVNHLN 158
E +QK ++A ED V HLN
Sbjct: 309 SLKEDSQKG--VIKAPEDGVLHLN 330
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 28.8 bits (65), Expect = 1.7
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 64 KTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQD 123
K L +NLEG K + + L + K L + A +++ Q++ L DE+ D
Sbjct: 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELR---QLKQLEDELEDCD 202
Query: 124 E-----LINKLNKEKKQAGEVTQKTAE---ELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175
KL K ++ +K E ELQ E K+ L K++L + E E L
Sbjct: 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262
Query: 176 EREKK 180
E+ +
Sbjct: 263 EQCRG 267
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 29.0 bits (65), Expect = 1.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 47 EKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
E AR+ +EA A+++E L+ N EG++ G ++ R
Sbjct: 324 EAARRALEAAGAEVIEVDFPLVSNCEGDRPGAPTVFNR 361
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 28.7 bits (64), Expect = 1.9
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 117 DEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK-VKAKLEQTLDELEDSL 175
+ + E I + A K E+L+ E L + A++E+ + E+ +
Sbjct: 411 EHSERELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADGEEKI 470
Query: 176 E---REKKLR 182
EK LR
Sbjct: 471 RSGMGEKNLR 480
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 28.9 bits (64), Expect = 2.0
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 23/161 (14%)
Query: 31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
+L++++ + E L++ EK +L L +E +L L + + +L
Sbjct: 475 ELDQELRKAERELSKAEK-----NSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH 529
Query: 91 QKADLETQLAADQDKATKDHQIRNLNDEIAHQDELI----------------NKLNKEKK 134
+DK KD QIR + H DEL + +KE
Sbjct: 530 HTTTRTQMEMLTKDKMDKDEQIRKIKSR--HSDELTSLLGYFPNKKQLEDWLHSKSKEIN 587
Query: 135 QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175
Q + K +EL + E NH+N E+ L ED L
Sbjct: 588 QTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL 628
>gnl|CDD|237377 PRK13405, bchH, magnesium chelatase subunit H; Provisional.
Length = 1209
Score = 28.5 bits (64), Expect = 2.3
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 1 MVDLLAAKESFKG-DPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAK 59
++DL A+ E ++G P+A R ++ L Q + V A A EE+A + L A
Sbjct: 674 LLDLKASLERWRGLPPDATEERAELAALIQAQAAA-VDLAPAEPAWEEEAGARIAKLWAA 732
Query: 60 LLEEKTTLLKNLEGEKSGL------SSIQERAAKLAA-QKADLETQLAADQDKATKDHQI 112
LLE + TL+ + GL S +ER L A +A + D+ A DH++
Sbjct: 733 LLELEYTLIPH------GLHVVGEPPSEEERVDLLLAMAEASHGKRAEIDRLLAE-DHEL 785
Query: 113 RNL 115
L
Sbjct: 786 PAL 788
>gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968). This
family of proteins has no known function.
Length = 192
Score = 27.8 bits (62), Expect = 2.5
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 78 LSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAG 137
L+ ++ R A+L AQKA LE Q+AA + +A L ++ ++ ++QA
Sbjct: 100 LADVEIRRAQLEAQKAQLERQIAASEARA------ERLQADLQLAQAQEQQVAARQQQAR 153
Query: 138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175
+ + QAA+ ++ L + +L+ +E L
Sbjct: 154 QEAVALEAQRQAAQAQLRKLQRQIRQLQAQQNEPIPHL 191
>gnl|CDD|224380 COG1463, Ttg2C, ABC-type transport system involved in resistance to
organic solvents, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 359
Score = 27.8 bits (62), Expect = 3.2
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 87 KLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGE-------V 139
L ++ A LN + + + + LN G +
Sbjct: 150 LLLGGLDPDRLNAILNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQL 209
Query: 140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176
A + +++L + A L D L+D+L
Sbjct: 210 LDSLAAASDQLDRLLDNLATLTAALAARRDALDDALA 246
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.8 bits (62), Expect = 3.2
Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 5/148 (3%)
Query: 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAK 87
++ KLE+++ E +A E E KL ++ L L + + R A+
Sbjct: 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAE 119
Query: 88 L--AAQKADLETQLAA--DQDKATKDHQIRNLNDEIAHQD-ELINKLNKEKKQAGEVTQK 142
A Q++ A + A + ++ + E I+ L KQ V +
Sbjct: 120 QLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAE 179
Query: 143 TAEELQAAEDKVNHLNKVKAKLEQTLDE 170
A E ++ +AKL Q L+E
Sbjct: 180 IAAEQAELTTLLSEQRAQQAKLAQLLEE 207
Score = 27.8 bits (62), Expect = 4.0
Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 18/168 (10%)
Query: 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLL---------EEKTTLLKNLEGEKSGLSS 80
+KL +++A A L E +E A+ L L+ + ++S +
Sbjct: 90 KKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLA 149
Query: 81 I------QERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134
I RA ++ A KA L+ A + A + ++ L E Q + +L +E+K
Sbjct: 150 IYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK 209
Query: 135 QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
+ + EL A + K+ L +++L+ + E + + ++
Sbjct: 210 KT---LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA 254
Score = 26.6 bits (59), Expect = 8.1
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 3 DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKL-- 60
++ K + + + Q +L +++ A A+ + +E + A+L
Sbjct: 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNS 217
Query: 61 -LEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKA 93
L L+ L +S L + A AA+
Sbjct: 218 ELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 28.0 bits (63), Expect = 3.4
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 36 VAQTEASLARE-EKARKEVEALNAKLLEEKTTLLKN---LEGEKSGLSSIQERAAKLAAQ 91
+A A L +E EK KE++ + KL E +E EK L+ Q + AKL +
Sbjct: 812 LAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEER 871
Query: 92 KADLE 96
A L+
Sbjct: 872 LAVLK 876
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 27.7 bits (62), Expect = 3.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 28 RQQKLEEKV--AQTEASLAREEKARKEVEALNAKLLEE-KTTLLKNLEGEKSGLSSIQER 84
R L++++ AQ EA+ R + A + L +K L K+ L+ L+ ++++E
Sbjct: 791 RVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDA-AALKEA 849
Query: 85 AAKLAAQKADL 95
A K+ A+ D
Sbjct: 850 AEKVIAKLGDP 860
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 27.9 bits (62), Expect = 4.1
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 1/117 (0%)
Query: 36 VAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADL 95
A+ + ARE + + L+A L L L E L + Q A A
Sbjct: 727 AAEYIGAAARERARLRRIAELDA-RLAAVDDELAELARELRALGARQRALADELAGAPSD 785
Query: 96 ETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152
+ AA + A + Q + E+A KQA ++ A +L D
Sbjct: 786 RSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTD 842
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 27.4 bits (61), Expect = 4.3
Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 7/170 (4%)
Query: 13 GDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLE 72
G +L + + L A+ E + L +L E K L + L
Sbjct: 28 GRLEQMLGELAAVLEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLL 87
Query: 73 GEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINK--LN 130
+ L + E A+L+++ +L A++ + ++ LN + Q + L
Sbjct: 88 QSREQLQLLIESLAQLSSEFQEL-----ANEIFEELNRRLAELNQQNLKQLLKPLREVLE 142
Query: 131 KEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
K ++Q + ++AEE ++++ L +L Q L +L+ K
Sbjct: 143 KFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKT 192
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA
topoisomerase IV, GyrA, ParC.
Length = 444
Score = 27.5 bits (62), Expect = 4.5
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 27/102 (26%)
Query: 108 KDHQIRNLNDEIAHQ-----------DELI------NKLNKEKKQAG----EVTQKTAEE 146
K++ + L E H DE+I L KE K+ E+++ A+
Sbjct: 343 KEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKEKLMERFELSEIQADA 402
Query: 147 L------QAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
+ + + +V L K +LE+ +++LE L E+ L
Sbjct: 403 ILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILASEEWLN 444
>gnl|CDD|238563 cd01143, YvrC, Periplasmic binding protein YvrC. These proteins
are predicted to function as initial receptors in ABC
transport of metal ions in eubacteria and archaea. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised
of two globular subdomains connected by a single helix
and can bind the metal ion in the cleft between these
domains.
Length = 195
Score = 26.9 bits (60), Expect = 4.9
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 117 DEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLE 165
DEI Q ELI K+ +++A ++ ++ +++ +DK + K K +E
Sbjct: 95 DEIYDQIELIGKITGAEEEAEKLVKEMKQKIDKVKDKGKTIKKSKVYIE 143
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407). This
family of proteins is found in bacteria. Proteins in
this family are typically between 366 and 597 amino
acids in length. There is a single completely conserved
residue R that may be functionally important.
Length = 297
Score = 27.2 bits (61), Expect = 5.1
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 82 QERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ------ 135
+ + + AA +A + A +I L EI +N +E +
Sbjct: 116 EIQQEEQAAAQAQVAAGF--RPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQCEAEGTG 173
Query: 136 ------AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
G V ++ E+L AA+ ++ L L+ + +LER ++
Sbjct: 174 GTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQ 224
>gnl|CDD|225270 COG2406, COG2406, Protein distantly related to bacterial ferritins
[General function prediction only].
Length = 172
Score = 26.7 bits (59), Expect = 5.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 98 QLAADQDKATKDHQIRNLNDEIAHQDELINKLNKE 132
L A +D T + L +EI H+ + L KE
Sbjct: 128 NLTAGKDPRTYELAEAILREEIEHRTWFLELLGKE 162
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 27.3 bits (61), Expect = 5.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 124 ELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELED 173
E I L E K+ E + +E+ E+ +N L++ K+ L++ L+EL +
Sbjct: 74 EEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSE 123
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 27.2 bits (61), Expect = 5.5
Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 32/134 (23%)
Query: 22 KQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI 81
+++ ++R KV ++ + E LNA+ ++ +L N + L +
Sbjct: 170 QRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGN-----TQLQDL 224
Query: 82 -QERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVT 140
Q++ L A+ LE QL Q E IN +K +
Sbjct: 225 LQKQRDYLTARIQRLEHQLQLLQ--------------------EAIN--SKRLTL----S 258
Query: 141 QKTAEELQAAEDKV 154
+KT +E Q+ ++
Sbjct: 259 EKTVQEAQSQDEAA 272
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 27.4 bits (61), Expect = 5.6
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 35/179 (19%)
Query: 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAK 87
RQQ+ Q ASL + K ++E + ++ L E L L + L++ AK
Sbjct: 64 RQQQ------QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA---SIAK 114
Query: 88 LAAQKADLETQLAADQDKATKDHQIRN----LNDEIAHQDELI----NKLNKEKKQAGEV 139
L Q+A E LAA D A + + L+ E + + E I LN+ +++
Sbjct: 115 LEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAE 174
Query: 140 TQKTAEELQAA----EDKVNHLNKV-------KAKLEQ-------TLDELEDSLEREKK 180
++T EEL A E+K + + + KLEQ TL LE SL+++++
Sbjct: 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQ 233
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 27.0 bits (61), Expect = 6.4
Identities = 18/97 (18%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 83 ERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDE-LINKLNKEKKQAGEVTQ 141
++ A+ ++A LE + + + + ++R +E+ ++ L+ K ++ + +
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
Query: 142 KTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLERE 178
+ EEL+ E ++ + K E+ L+EL + +E
Sbjct: 108 RE-EELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 27.2 bits (61), Expect = 6.5
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA 85
EL + KL+ VA T+ ++ VE+ A L+E+ L E + G +IQ
Sbjct: 168 ELEESKLDLVVAGTKDAV-------NMVES-EADELDEEVML----EAVEFGHEAIQS-- 213
Query: 86 AKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE 145
+ AQ+ +LA + K + + +L++E+ + ++ + E K+A + +K
Sbjct: 214 -VINAQE-----ELALEVGKKKWELEPPSLDEEL--EAKVRDLAEDELKEAVGIREKQER 265
Query: 146 ELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176
K ++ + E +L E++ LE
Sbjct: 266 SAALDAIKEKIEEELSGEEESSLKEIKAILE 296
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 27.3 bits (61), Expect = 6.5
Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 27/162 (16%)
Query: 30 QKLEEKVAQTEASLAREEKARKEVEA-LNAKLLEEKTTLLKNLEGEKSGLSSIQ--ERAA 86
KL+ V T L + +K +EA L+ +L+ KS + R+
Sbjct: 353 AKLKNLVLSTLKELVKNGIDKKLIEAILHQLEF--------SLKEVKSYPFGLGLMFRSL 404
Query: 87 KLAAQKADLETQLAADQDKATKDH-QIRNLNDEIAHQD---ELINKLNKEKKQAGEVTQK 142
D E L + ++NL +++ +LI K + V
Sbjct: 405 YGWLNGGDPEDSL--------RFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVL 456
Query: 143 TAEELQAAEDKVNH--LNKVKAKLEQTLDELEDSLEREKKLR 182
+ EL+ +K L K ++L ++LE ++ KKL+
Sbjct: 457 PSPELEEKLEKEERELLQKRSSELTD--EDLEKIIKDSKKLK 496
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 27.1 bits (60), Expect = 6.6
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 6/164 (3%)
Query: 16 NAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK 75
A + + R+ + E +A+ EEKA+ E E +AK LE + + +E +K
Sbjct: 275 EAEVAAWKAETRREAEQAEILAEQAIQ---EEKAQAEQEVQHAKALEAREMRVGLIERQK 331
Query: 76 SGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
QER+ + A + + + A + A E A + E + ++
Sbjct: 332 ETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEA---ERAEQA 388
Query: 136 AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREK 179
A + AE+ Q K +A+ + + E REK
Sbjct: 389 ALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREK 432
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 26.6 bits (59), Expect = 6.7
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAA 86
L QKL+ + + E + KA K+ +A L + L LE ++ +S ++
Sbjct: 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69
Query: 87 KLAAQKADLETQLAA----------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
++ + E +L+A + + +I +L DE+A E I KL KE +
Sbjct: 70 EIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129
Query: 137 GEVTQKTAEELQAAEDKV 154
E ++ + L AE ++
Sbjct: 130 KERLERLEKNLAEAEARL 147
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 26.8 bits (60), Expect = 7.3
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 16 NAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK 75
A+L K+ + + +LE ++ + L R E+ + E + +E +NLE ++
Sbjct: 51 EALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKE 110
Query: 76 SGLS----SIQERAAKL----AAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELIN 127
LS ++ E+ +L A Q+ +LE Q++A K+ + + +E H E
Sbjct: 111 KELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEA-KEILLEEVEEEARH--EAAK 167
Query: 128 KLNKEKKQAGEVTQKTAEEL 147
+ + +++A E K A+E+
Sbjct: 168 LIKEIEEEAKEEADKKAKEI 187
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 27.0 bits (60), Expect = 7.8
Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 19 LTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALN--AKLLEEKTTLLKNLEGEKS 76
+LE ++ L E+ Q + + E+ ++E E L + L+ + L NLE +
Sbjct: 49 KLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
Query: 77 GLS-SIQERAAKLAAQKADLETQL---AADQDKATKDHQIRNLNDEIAHQDELINKLNKE 132
++ R +L + L+ +L A + + ++ L+ E+ + K +E
Sbjct: 109 EREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEE 168
Query: 133 KKQAG 137
+
Sbjct: 169 EADLE 173
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 26.6 bits (59), Expect = 7.9
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 79 SSIQERAAKLAAQKADLETQLA----ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134
+S++ A LA +ADL A T +A +L +
Sbjct: 254 NSLKALQAALATAQADLAAAQTALNTAQAALTTAQTAYAAAQAALA---TAQKELANAQA 310
Query: 135 QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL 175
QA + Q L A+ + + AK ++ L L L
Sbjct: 311 QALQTAQNN---LATAQAALANAEARLAKAKEALANLNADL 348
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 26.9 bits (60), Expect = 7.9
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 110 HQIRNLNDE-------IAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK-VK 161
+++ L E H ++I K ++ ++ + + A+ + E ++ L K +K
Sbjct: 91 RKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALK 150
Query: 162 AKLE------QTLDELEDSLEREKKLR 182
+ L+ ++L L +L++E + R
Sbjct: 151 SYLKIVKEENKSLQRLAKALQKESEER 177
>gnl|CDD|216344 pfam01175, Urocanase, Urocanase.
Length = 545
Score = 26.7 bits (60), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 14 DPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLL 61
D + I R L L+E + +LAR ++AR E L+ LL
Sbjct: 188 DESRIDKR-----LETGYLDEVADDLDEALARAKEARAAGEPLSIGLL 230
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 26.6 bits (60), Expect = 8.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE 176
+EL + N K+ G+ ++ E+ +A +V L + LE LDELE LE
Sbjct: 45 EELQAERNALSKEIGQA-KRKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97
>gnl|CDD|201244 pfam00463, ICL, Isocitrate lyase family.
Length = 526
Score = 26.4 bits (58), Expect = 9.5
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 135 QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
E K ELQA ED+ +K E +DE+ KK
Sbjct: 267 VMAEAAGKNGAELQAIEDEWLAKAGLKLFHEAVVDEINRGNLSNKK 312
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.303 0.121 0.295
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,742,438
Number of extensions: 820920
Number of successful extensions: 3096
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2417
Number of HSP's successfully gapped: 884
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (25.5 bits)