RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4658
(182 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 91.8 bits (228), Expect = 4e-22
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 1 MVDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKL 60
L K + A E + +L K + E L E +E E + +L
Sbjct: 887 HTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL 946
Query: 61 LEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIA 120
EK K ++ + + ++E+ + A + L+ +K T D +I+ + D+I
Sbjct: 947 QAEK----KKMQQQ---MLDLEEQLEEEEAARQKLQ------LEKVTADGKIKKMEDDIL 993
Query: 121 HQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
++ NKL KE+K E L E+K +L K+K K E + ELE L++E+K
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Query: 181 LR 182
R
Sbjct: 1054 SR 1055
Score = 65.2 bits (159), Expect = 5e-13
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA 85
E Q +E++ +T+ + E KE+E + +L EEK L + L+ E + +E
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 86 AKLAAQKADLETQLAADQDKATKDH---------------QIRNLNDEIAHQDELINKLN 130
+LAA+K +LE L + + ++ Q+ +L +++ ++ KL
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 131 KEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
EK A +K +++ ED+ N L K + LE+ + +L +L E++
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Score = 63.7 bits (155), Expect = 2e-12
Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
L ++ LEE+V+ +LA EE+ K + L K + L L+ E+ +++
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 85 AAKLAAQKADLETQLAADQDK--------ATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
KL + +DL Q+A Q + A K+ +++ + + N K+ ++
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Query: 137 GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
E+L++ + N K K L + L+ L+ LE
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165
Score = 59.5 bits (144), Expect = 6e-11
Identities = 29/154 (18%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
L + K E +++ E L +EEK+R+E+E + KL E + L + + ++ ++ ++ +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 85 AAKLAAQKADLETQLAADQDKATK--------DHQIRNLNDEIAHQDELINKLNKEKKQA 136
AK + +L + + + I +L +++ + NK K+K+
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 137 GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDE 170
E + EL+ D +++ + D+
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 56.8 bits (137), Expect = 5e-10
Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 15/195 (7%)
Query: 3 DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62
L A K+ + + + + E +QKL+ + + + + E +E N KL +
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 63 EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATK--------DHQIRN 114
E+ L + + + L+ +E+A L K E+ ++ + + K + R
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 115 LNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKV-------NHLNKVKAKLEQT 167
L E + E I +L + + K EELQAA ++ N+ K +LE
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 168 LDELEDSLEREKKLR 182
+ +L++ LE EK R
Sbjct: 1125 ISDLQEDLESEKAAR 1139
Score = 30.6 bits (69), Expect = 0.28
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 20 TRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLS 79
++K + ++LE ++ + L E+ AR + E L EE L LE +
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168
Query: 80 SIQERAAKLAAQKAD 94
+ QE D
Sbjct: 1169 TQQELRGSDYKDDDD 1183
Score = 29.0 bits (65), Expect = 0.99
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 1 MVDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARK----EVEAL 56
+ LA E N L + + LE L+E + +A+ + EK ++ E+EAL
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Query: 57 NAKLLEEKTTLLKNLEGEKSGLSSIQER 84
+L + T E S ++
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYKDDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 75.1 bits (185), Expect = 2e-16
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 9/183 (4%)
Query: 2 VDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEA-SLAREEKARKEVEALNAKL 60
V A+ + AI+ + K E K + EA S+ R +K +E +L
Sbjct: 874 VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 61 ---LEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLND 117
++E+ K+L + + L + + ++D+E ++++ +++ +L +
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNL--EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Query: 118 EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177
EIA + +++ EKK E K E E V+ L + L+ +EL +
Sbjct: 992 EIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELNRRIHD 1048
Query: 178 EKK 180
+ K
Sbjct: 1049 QAK 1051
Score = 36.2 bits (84), Expect = 0.004
Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 11/167 (6%)
Query: 19 LTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEAL----NAKLLEEKTTLLKNLEGE 74
L RK+ + +R+ A T R +AR L A ++++ + +
Sbjct: 782 LMRKKYMRMRRA------AITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRY 835
Query: 75 KSGLSSIQERAAKLAAQKADLETQLAADQDKATK-DHQIRNLNDEIAHQDELINKLNKEK 133
+ + A L + Q+ + K+ +R + + L + +
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 134 KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
+ ++ ++L+ V K+ LE + +L+ ++ + K
Sbjct: 896 CYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK 942
Score = 36.2 bits (84), Expect = 0.004
Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 1/165 (0%)
Query: 17 AILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKS 76
AI+ +K +K + + +L + L E K+ +++
Sbjct: 819 AIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWL 878
Query: 77 GLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
+ + +A + K K + R++ L NK+ + +++
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI-EARSVERYKKLHIGLENKIMQLQRKI 937
Query: 137 GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
E ++ L+ + + KL ++ L S E K
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982
Score = 33.9 bits (78), Expect = 0.023
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 22 KQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGL--- 78
+ +E + EE T L+ +E+ K + L + EK T+ + + K
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL-HQTQTEKKTIEEWADKYKHETEQL 1024
Query: 79 -SSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
S ++E+ L +K +L ++ DQ K + + L +E +L LN E+ +
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRI-HDQAKEITETMEKKLVEETK---QLELDLNDERLR 1078
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 61.2 bits (149), Expect = 2e-11
Identities = 14/139 (10%), Positives = 35/139 (25%), Gaps = 5/139 (3%)
Query: 28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAK 87
+ K ++K+A R K + + L + + + +
Sbjct: 876 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSN-----ETGDSITAVQAKLKNLEA 930
Query: 88 LAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147
+ LE Q +D N N + ++ + L
Sbjct: 931 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 990
Query: 148 QAAEDKVNHLNKVKAKLEQ 166
A +++ + +
Sbjct: 991 LAELERLQKIEDLHHHHHH 1009
Score = 46.6 bits (111), Expect = 1e-06
Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 9/170 (5%)
Query: 21 RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS 80
+LR K E VA + + +E + E LK + L
Sbjct: 831 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 890
Query: 81 IQERAAKLAAQKADLETQLAAD---QDKATKDHQIRNLNDEIA----HQDELINKLNKEK 133
KL L ++ +++NL + + + L
Sbjct: 891 YNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 950
Query: 134 KQAGEVTQKTAEELQA--AEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
Q E+ EL VK+ E + L LER +K+
Sbjct: 951 AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKI 1000
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-08
Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 78/223 (34%)
Query: 11 FKGDPNAILTRKQILELRQQKL--------EEKVAQTE----ASLAREEKARKEVEALNA 58
F+ + L ++I + + + ++ T+ A +E
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL--------MEKAAF 1744
Query: 59 KLLEEKTTLLKN-------LEGEKSGLS------SIQERAAKLAAQKADLETQLAADQDK 105
+ L+ K + + L GE + L+ SI+ ++ + Q+A +D+
Sbjct: 1745 EDLKSKGLIPADATFAGHSL-GEYAALASLADVMSIES-LVEVVFYRGMT-MQVAVPRDE 1801
Query: 106 ATK------------------DHQIRNLNDEIAHQD----ELINKLNKEKKQ---AGEVT 140
+ ++ + + + + E++N N E +Q AG+
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-YNVENQQYVAAGD-- 1858
Query: 141 QKTAEELQAAEDKVNHLNKVK------AKLEQT--LDELEDSL 175
L+A + N LN +K +L+++ L+E+E L
Sbjct: 1859 ------LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 30.4 bits (68), Expect = 0.33
Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 49/140 (35%)
Query: 5 LAAK---ESFKGDPNAILTRKQILELRQQKLEEKVAQTE-----------------ASLA 44
LA+ S + + + +++ R ++ V + E AS +
Sbjct: 1770 LASLADVMSIE---SLV----EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 45 REEKARKEVEALNAKLLEEKTTLLK----NLE-------GEKSGLSSIQERAAKLAAQKA 93
+E ++ + ++ + L++ N+E G+ L ++ + QK
Sbjct: 1823 QEA-----LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 94 D---LETQLAADQDKATKDH 110
D L+ L+ ++ + H
Sbjct: 1878 DIIELQKSLSLEE---VEGH 1894
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 43.7 bits (103), Expect = 1e-05
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 7/163 (4%)
Query: 22 KQILELRQQKLEEKVAQTEASLAR-------EEKARKEVEALNAKLLEEKTTLLKNLEGE 74
+ L + ++L+ K Q L + E +K+ L +L +
Sbjct: 1940 QVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999
Query: 75 KSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134
+ L + + + I L IA E L +E +
Sbjct: 2000 YADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE 2059
Query: 135 QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177
Q + K ++ + +++LN + + EQ + +
Sbjct: 2060 QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102
Score = 27.6 bits (61), Expect = 3.3
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 18/79 (22%)
Query: 88 LAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQ-----------DELINKLNKEKKQA 136
+++DL Q ++R L + + D +I+ L KK+
Sbjct: 2324 THKKRSDLLKIQGEFQV------KLRILEKSLLNALSQASGNILDDDSVISTLETLKKET 2377
Query: 137 GEVTQKTAEELQAAEDKVN 155
E+ K EE + +++
Sbjct: 2378 TEIALK-VEETETVMQEIS 2395
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 6e-04
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 38/192 (19%)
Query: 26 ELRQ--QKL---EEKVAQTEASLAR--EEKARKEVEALNAKLLEEKTTLLKNLEGEKSGL 78
E R+ +L L+ + + +V + L + + + K + +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISI 428
Query: 79 SSIQERAAKLAAQKADLETQLAADQDKATK----DHQIRNLNDE-----IAH------QD 123
SI + L + D K D I D+ I H
Sbjct: 429 PSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 124 ELINKLNK--------EKK-----QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDE 170
E + E+K A + LQ + ++ K E+ ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 171 LEDSLER-EKKL 181
+ D L + E+ L
Sbjct: 548 ILDFLPKIEENL 559
Score = 31.0 bits (69), Expect = 0.23
Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 81/236 (34%)
Query: 21 RKQILELRQQK--------------LEEKVAQTEA------------SLAREEKARKEVE 54
R+ +LELR K + V + +L +E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 55 ALNA---KLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAAD--QDKA--- 106
L ++ T+ + K + SIQ +L K L Q+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 107 -----------TKDHQIRN-----------LNDEIA--HQDE----LINKLNKEKKQAGE 138
T+ Q+ + L+ DE L+ L+ +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 139 VTQKT--------AEELQAAEDKVNHLN--------KVKAKLEQTLDELEDSLERE 178
T AE ++ D + + K+ +E +L+ LE + R+
Sbjct: 321 EVLTTNPRRLSIIAESIR---DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 32.6 bits (73), Expect = 0.072
Identities = 29/165 (17%), Positives = 66/165 (40%), Gaps = 9/165 (5%)
Query: 22 KQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLE------GEK 75
K + E + ++V + + L + + R+ +E K LE K+ +E +K
Sbjct: 598 KAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQK 657
Query: 76 SGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQI--RNLNDEIAHQDELINKLNKEK 133
+ ++ + A A+ L + + + + ++L D DE N NK+
Sbjct: 658 DEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDF 717
Query: 134 KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLERE 178
+A E + ++ ++KV+ L L+E ++ ++
Sbjct: 718 SKAEETLKALKGSVKDLGINPEWISKVE-NLNAALNEFKNGKNKD 761
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 29.5 bits (66), Expect = 0.19
Identities = 15/70 (21%), Positives = 37/70 (52%)
Query: 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89
++ +++ + + LA+ E+ +KE+E N LLE+K L +++ + + + + L
Sbjct: 17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLE 76
Query: 90 AQKADLETQL 99
+ A L+ +
Sbjct: 77 NEVARLKKLV 86
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 31.3 bits (70), Expect = 0.20
Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 2/153 (1%)
Query: 20 TRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLS 79
+ + L Q+ Q + EKARKE+ L A + ++T E E +
Sbjct: 673 AKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESR--A 730
Query: 80 SIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
+ + +A L+ Q A + +A + + E+ + + + +Q V
Sbjct: 731 EAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANV 790
Query: 140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELE 172
K +E+ A + A E + L+
Sbjct: 791 EAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQ 823
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.8 bits (68), Expect = 0.48
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 19 LTRKQILELRQQKLEEKVAQTE---ASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK 75
L RK Q ++E + + E S R + E+ AKL EE L E E+
Sbjct: 406 LERK----KLQLEIEREALKKEKDPDSQERLKAIEAEI----AKLTEEIAKLRAEWERER 457
Query: 76 SGLSSIQERAAKLAAQKADLE 96
L ++E +L + ++E
Sbjct: 458 EILRKLREAQHRLDEVRREIE 478
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.7 bits (64), Expect = 1.4
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 88 LAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQ-----------DELINKLNKEKKQA 136
+ ++ DL + +++NL + + DEL+ LN KK+A
Sbjct: 2144 MQRKREDLIKLNTEYKL------KLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEA 2197
Query: 137 GEVTQKTAEELQAAEDKVN 155
+ +K E + + +
Sbjct: 2198 MNIEKK-LSESEEFFPQFD 2215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.2 bits (62), Expect = 1.6
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 22 KQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI 81
+Q+ R ++ E ++ + E L + K++ K LE+K K+L+ E +
Sbjct: 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDK---KKSLDDEVNAFKQR 399
Query: 82 QERAAKLAAQKADLETQLAADQDKATKD 109
+ A L +Q + +DK K+
Sbjct: 400 KTAAELLQSQGSQAGGSQTLKRDKEKKN 427
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 27.1 bits (61), Expect = 3.2
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
E ++ AEE+ A D+ + +E L + + +KL
Sbjct: 262 EALRQKAEEV-AGNDR---DLDLALHVEAEAIRLLEIYKPGRKL 301
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 26.4 bits (58), Expect = 4.0
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89
++E+ + + +L + E RKE+E LL+EK L ++ E+ L+ +ER +L
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 75
Query: 90 AQKADLETQLAADQDKATKDHQIRN 114
K LE ++ + + ++
Sbjct: 76 KNKIQLEAKVKEMNKRLEDEEEMNA 100
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 26.9 bits (60), Expect = 4.4
Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQE 83
+ + ++ E ++ + EA+L R + + A+L + T + ++ S Q+
Sbjct: 59 LGVIDPEQAENQIKEVEATLME---LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD 115
Query: 84 ---RAAKLAAQKADLETQLAA-DQDKATKDHQIRNLND 117
A ++A ++A + T A +++A+ D NL+
Sbjct: 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDY 153
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 26.7 bits (60), Expect = 5.1
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 124 ELINKLNKEKKQAGEVTQKTAEELQAAEDKVN---HLNKVKAKLEQTLDELEDSLEREKK 180
EL L + + EV + + E+KV + L + E ERE
Sbjct: 9 ELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLY-----GKALKQAESLKERELP 63
Query: 181 L 181
L
Sbjct: 64 L 64
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: a.2.15.1
Length = 92
Score = 25.4 bits (55), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
Q+ + +IR+LNDE INKL +EK
Sbjct: 45 QNAGLGEFRIRDLNDE-------INKLLREKGH 70
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 26.4 bits (59), Expect = 7.3
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 43 LARE-EKARKEVEALNAKLLEEKTTLLKN-----LEGEKSGLSSIQERAAKLAAQKADL 95
+ ++ E KL + +E E++ L E+A ++ + +
Sbjct: 805 QEKRLKELLALAERSQRKLASPG--FREKAPKEVVEAEEARLKENLEQAERIREALSQI 861
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 26.0 bits (58), Expect = 7.9
Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 81 IQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKE---KKQAG 137
I+ K ++ +A ++ + N ++ N + KE + +A
Sbjct: 18 IKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKL-------NSVQKEIGKRFKAK 70
Query: 138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDEL 171
E + E + ++ + + +A+ ++ L
Sbjct: 71 EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 26.0 bits (58), Expect = 8.2
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 17/77 (22%)
Query: 119 IAHQDELINKLNKEKKQ-----------AGEVTQKTAEELQAA---EDKV---NHLNKVK 161
Q +L K K + ++ EL AA K L++VK
Sbjct: 257 CKAQADLAAKAAKPTGEFPVFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVK 316
Query: 162 AKLEQTLDELEDSLERE 178
A + L + E+E
Sbjct: 317 ALAAEKLLPEFEGREKE 333
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 8.4
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 165 EQTLDELEDSLEREKKL 181
+Q L +L+ SL KL
Sbjct: 19 KQALKKLQASL----KL 31
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 25.7 bits (57), Expect = 9.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 133 KKQAGEVTQ--KTAEELQAAEDKV--NHLNKVKAKLEQTLDELEDSLERE 178
KK G +TQ K L E + LN +KA LE L+ E +LE
Sbjct: 28 KK--GLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEA 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.303 0.121 0.295
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,449,393
Number of extensions: 140937
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 274
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (24.5 bits)