RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4658
         (182 letters)



>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score = 28.1 bits (63), Expect = 0.17
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQ 135
           Q+    + +IR+LNDE       INKL +EK  
Sbjct: 39  QNAGLGEFRIRDLNDE-------INKLLREKGH 64


>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 25.3 bits (55), Expect = 4.4
 Identities = 11/78 (14%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 82  QERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQ 141
            +    L  +  ++  ++A +  K      IR+ N+ +A  ++++     +  ++ +   
Sbjct: 118 DKLGEYLGVKYKNVAKEVA-NDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDAI 176

Query: 142 KTAEELQAAEDKVNHLNK 159
             A +   A+D  N +  
Sbjct: 177 VNAWKQVNAKDMANKIGN 194


>d2f0ca2 b.108.1.4 (A:17-62) Baseplate protein (bpp), N-terminal
           domain {Lactococcus phage tp901-1 [TaxId: 35345]}
          Length = 46

 Score = 23.4 bits (50), Expect = 4.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 123 DELINKLNKEKKQAGEVTQKTAEE 146
           ++ +  +N E    G V  KT +E
Sbjct: 3   NDDLEAINSELTSGGNVVHKTGDE 26


>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
           562]}
          Length = 174

 Score = 24.3 bits (53), Expect = 7.8
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 98  QLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHL 157
           QLA +     K  +IRN+ + +   ++    +NK+           A E     D  ++L
Sbjct: 23  QLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNL 82

Query: 158 NKV 160
           N+ 
Sbjct: 83  NRF 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.303    0.121    0.295 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 548,342
Number of extensions: 23029
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 48
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.3 bits)