RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4659
         (132 letters)



>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha;
           phospholipid binding protein, phospholipid transport,
           binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4
           PDB: 1t27_A* 1uw5_A* 2a1l_A*
          Length = 270

 Score = 86.3 bits (213), Expect = 1e-21
 Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 16/98 (16%)

Query: 20  LYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQ 79
           +   DY  EEDP+ + S  TGRGPL  NW  E  N           +   MCAYKL  ++
Sbjct: 149 VLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQELVNQ---------KDCPYMCAYKLVTVK 199

Query: 80  LNYWGIQSKVERFIADTGKPSGRALPRHFRRALRFAVT 117
             +WG+Q+KVE FI        +   R F    R    
Sbjct: 200 FKWWGLQNKVENFIH-------KQEKRLFTNFHRQLFC 230


>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
           musculus}
          Length = 421

 Score = 27.5 bits (62), Expect = 1.4
 Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)

Query: 88  KVERFIADTGKPSGRALPRH-FRRALRFA 115
                I D G  +  + PR+  R AL   
Sbjct: 83  ATAAVICDGGAAAAAS-PRYIARAALAQL 110


>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae}
           SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
          Length = 231

 Score = 26.1 bits (57), Expect = 3.4
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 23  GDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNY 82
           G      D ++Y      R    E       +A      V+    +   A+     + + 
Sbjct: 38  GSIAFLNDQAMYEQGRLLRNT--ERGKLAAEDANLSSGGVA---NAFSGAFGSPITEKDA 92

Query: 83  WGIQSKVERFIADTGKPSGRALPRHFRRALRFAVTLDKPCR 123
             +   +   I D G  + R+   H+ R   FA      C 
Sbjct: 93  PALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYGVSTCN 133


>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics,
           seattle structural genomics center for infectious
           disease, ssgcid; 1.80A {Entamoeba histolytica}
          Length = 405

 Score = 25.5 bits (55), Expect = 5.9
 Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 7/52 (13%)

Query: 88  KVERFIADTGKPSGRALPRHFRRALRFA-------VTLDKPCRCLESMLARH 132
           K E F  D    + +      +R + F+        + D            +
Sbjct: 307 KKEIFFFDVFPLATKVSIFEIQRFIEFSALKNSLNESFDNVNTVKRDWYRLN 358


>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold,
           ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL;
           1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB:
           1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A*
           1j8v_A*
          Length = 602

 Score = 25.3 bits (56), Expect = 9.2
 Identities = 4/18 (22%), Positives = 9/18 (50%), Gaps = 1/18 (5%)

Query: 39  TGRGPLSENWISEYWNAV 56
           +GR P+    +    +A+
Sbjct: 524 SGR-PVVVQPLLAASDAL 540


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,974,042
Number of extensions: 101564
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 6
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)