RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4659
         (132 letters)



>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score = 92.2 bits (229), Expect = 2e-24
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 20  LYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQ 79
           +   DY  EEDP+ + S  TGRGPL  NW  E  N           +   MCAYKL  ++
Sbjct: 149 VLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQELVN---------QKDCPYMCAYKLVTVK 199

Query: 80  LNYWGIQSKVERFIADTGK 98
             +WG+Q+KVE FI    K
Sbjct: 200 FKWWGLQNKVENFIHKQEK 218


>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]}
          Length = 163

 Score = 24.7 bits (53), Expect = 3.5
 Identities = 8/79 (10%), Positives = 17/79 (21%), Gaps = 2/79 (2%)

Query: 21  YGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQL 80
              +        I V+ T G G L  +W         E    ++    ++          
Sbjct: 36  ASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGT--LEASDFANKTIGLVGLGDQDTYSE 93

Query: 81  NYWGIQSKVERFIADTGKP 99
            +      +          
Sbjct: 94  TFAEGIFHIYEKAKAGKVV 112


>d1wfra_ d.106.1.1 (A:) Hypothetical protein TT1886 (TTHA0401)
          {Thermus thermophilus [TaxId: 274]}
          Length = 143

 Score = 23.7 bits (51), Expect = 6.9
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 44 LSENWISEYWNAVKEDPT 61
           +E W   Y   + E   
Sbjct: 11 FTEAWAQAYCRKLNESEA 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,649
Number of extensions: 20958
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 5
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)