BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4661
(59 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 762 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 807
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 805
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 805
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 805
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 756 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 801
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 755 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 800
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 68.9 bits (167), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 763 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 808
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +E++RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 762 VFFKAGVLGMLEDMRDERLSKIISMFQAHIRGYLMRKAYKKLQDQR 807
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 58.9 bits (141), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 39/52 (75%)
Query: 3 KWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
++ H VFF+AG+LG +EE+RDD+L +I+ Q+ RG+L R EY+++ E+R
Sbjct: 756 RFGHTKVFFKAGLLGLLEEMRDDKLAEIITRTQARCRGFLMRVEYRRMVERR 807
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 55.5 bits (132), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 4 WSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
+ H VFF AG+LG +EE+RDD L +I+ Q+ RG+L R EY+ + E+R
Sbjct: 760 FGHTXVFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERR 810
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 55.5 bits (132), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 4 WSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
+ H VFF AG+LG +EE+RDD L +I+ Q+ RG+L R EY+ + E+R
Sbjct: 757 FGHTXVFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERR 807
>pdb|3PN7|A Chain A, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|D Chain D, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|A Chain A, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|D Chain D, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|A Chain A, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
pdb|3TUY|D Chain D, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
Length = 69
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 19 MEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
+EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 2 LEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 37
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 53
+FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 53
+FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 53
+FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 53
+FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 53
+FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|3JTD|A Chain A, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|A Chain A, Calcium-Bound Scallop Myosin Regulatory Domain (Lever
Arm) With Reconstituted Complete Light Chains
Length = 65
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 22 LRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 1 MRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 33
>pdb|1WDC|A Chain A, Scallop Myosin Regulatory Domain
Length = 64
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 23 RDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 32
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 3 KWSHCTVFFRAGVLGQMEELRDDRLGK 29
K+ H VFF+AG+LG +EE+RD+RL +
Sbjct: 757 KFGHTKVFFKAGLLGLLEEMRDERLSR 783
>pdb|1SCM|A Chain A, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 60
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 26 RLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 1 RLSKIISMFQAHIRGYLIRKAYKKLQDQR 29
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQ 51
+FFRAG + +E++R D+L +Q +RG+L RK+Y +++
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 791
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE-----QRY 55
+FFRAG + +E++R D+L +Q +RG+L RK+Y +++ QRY
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRY 800
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 9 VFFRAGVLGQMEELRDDRLG 28
+FFRAG L ++EE R+ RLG
Sbjct: 744 IFFRAGQLARIEEAREQRLG 763
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 9 VFFRAGVLGQMEELRDDRLGKI 30
+FFRAG L ++EE R+ R+ +I
Sbjct: 755 IFFRAGQLARIEEAREQRISEI 776
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 9 VFFRAGVLGQMEELRDDRLGKI 30
+FFRAG L ++EE R+ R+ +I
Sbjct: 755 IFFRAGQLARIEEAREQRISEI 776
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 9 VFFRAGVLGQMEELRDDRL 27
+FFRAG L ++EE R+ RL
Sbjct: 743 IFFRAGQLARIEEAREQRL 761
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 28.9 bits (63), Expect = 0.82, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 9 VFFRAGVLGQMEELRDDRL 27
+FFRAG L ++EE R+ RL
Sbjct: 743 IFFRAGQLARIEEAREQRL 761
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 28.9 bits (63), Expect = 0.82, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 9 VFFRAGVLGQMEELRDDRL 27
+FFRAG L ++EE R+ RL
Sbjct: 755 IFFRAGQLARIEEAREQRL 773
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 9 VFFRAGVLGQMEELRDDRL 27
+FFRAG L ++EE R+ RL
Sbjct: 755 IFFRAGQLARIEEAREQRL 773
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 31/72 (43%)
Query: 9 VFFRAGVLGQMEELRDD---------RLGKIVGWM-------------------QSYMRG 40
+FFRAGVL Q+EE R R ++V W+ QS+M
Sbjct: 740 IFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNA 799
Query: 41 YLSRKEYKKIQE 52
+ KEYKK ++
Sbjct: 800 H---KEYKKTEK 808
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 9 VFFRAGVLGQMEELRDDRL 27
+FFR GVL +EE RD ++
Sbjct: 773 IFFRTGVLAHLEEERDLKI 791
>pdb|2BL0|A Chain A, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 63
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 26 RLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCDR 58
R+G+IV +Q+ RG++ RK +++ +E+ R
Sbjct: 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSAR 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,795,111
Number of Sequences: 62578
Number of extensions: 51956
Number of successful extensions: 185
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 33
length of query: 59
length of database: 14,973,337
effective HSP length: 30
effective length of query: 29
effective length of database: 13,095,997
effective search space: 379783913
effective search space used: 379783913
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)