Query psy4661
Match_columns 59
No_of_seqs 114 out of 1046
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:33:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kk8_A Myosin heavy chain, str 99.7 2.7E-16 9.1E-21 111.2 7.4 57 1-57 752-808 (837)
2 1w7j_A Myosin VA; motor protei 99.6 2.3E-16 8E-21 111.0 6.0 54 1-54 741-794 (795)
3 2dfs_A Myosin-5A; myosin-V, in 99.5 1.1E-14 3.7E-19 104.9 7.5 56 1-56 741-796 (1080)
4 1i84_S Smooth muscle myosin he 99.5 2.2E-14 7.6E-19 103.5 7.5 57 1-57 765-821 (1184)
5 4anj_A Unconventional myosin-V 99.5 4.4E-14 1.5E-18 101.8 4.9 56 1-57 748-803 (1052)
6 1g8x_A Myosin II heavy chain f 98.9 5.6E-09 1.9E-13 75.2 7.3 48 1-48 736-783 (1010)
7 2ycu_A Non muscle myosin 2C, a 98.7 8.6E-09 2.9E-13 74.1 4.6 51 1-51 732-810 (995)
8 1wdc_A Scallop myosin; calcium 98.6 3.9E-08 1.3E-12 50.3 4.2 36 23-58 1-36 (64)
9 2v26_A Myosin VI; calmodulin-b 98.6 1.6E-08 5.4E-13 71.5 1.8 41 1-42 744-784 (784)
10 1w9i_A Myosin II heavy chain; 98.4 3.1E-08 1.1E-12 70.0 -0.0 32 1-32 736-767 (770)
11 4db1_A Myosin-7; S1DC, cardiac 98.4 8.4E-08 2.9E-12 67.9 1.1 28 1-28 755-782 (783)
12 2bl0_A Major plasmodial myosin 98.3 8.3E-07 2.8E-11 45.2 4.1 33 26-58 2-34 (63)
13 2ix7_C Myosin-5A; contractIle 98.2 2.5E-06 8.7E-11 42.5 4.7 39 19-57 19-57 (58)
14 2ix7_C Myosin-5A; contractIle 98.2 1.2E-05 4.2E-10 39.9 6.7 33 25-57 2-34 (58)
15 1lkx_A Myosin IE heavy chain; 98.1 3.4E-07 1.2E-11 64.1 -0.2 27 1-27 669-696 (697)
16 1n2d_C IQ2 and IQ3 motifs from 97.9 2.3E-05 7.7E-10 37.5 4.3 23 30-52 5-27 (48)
17 1n2d_C IQ2 and IQ3 motifs from 97.4 0.00052 1.8E-08 32.6 4.8 20 28-47 28-47 (48)
18 3gn4_A Myosin-VI; unconvention 96.9 0.0016 5.5E-08 38.3 4.3 27 28-54 45-71 (148)
19 2l53_B CAM, voltage-gated sodi 96.3 0.005 1.7E-07 27.4 3.1 19 28-46 6-24 (31)
20 2kxw_B Sodium channel protein 96.3 0.0034 1.2E-07 27.1 2.4 18 28-45 6-23 (27)
21 2dfs_A Myosin-5A; myosin-V, in 95.2 0.049 1.7E-06 39.9 6.1 26 28-53 816-841 (1080)
22 4dck_A Sodium channel protein 85.1 2.2 7.4E-05 25.3 4.8 21 29-49 131-151 (168)
23 1kk8_A Myosin heavy chain, str 80.3 2.9 9.8E-05 30.1 4.7 23 28-50 805-827 (837)
24 1i84_S Smooth muscle myosin he 46.1 28 0.00095 25.8 4.2 21 28-48 818-838 (1184)
25 1m45_B IQ2, IQ2 motif from MYO 30.1 35 0.0012 13.8 3.4 21 27-47 2-22 (26)
26 2jxf_A NS4B(40-69), genome pol 23.9 54 0.0018 13.9 3.4 22 15-36 3-24 (30)
27 2dko_A Caspase-3; low barrier 22.6 25 0.00085 19.8 0.6 10 4-13 124-133 (146)
28 1qtn_A Caspase-8; apoptosis, d 21.4 27 0.00092 20.1 0.6 10 4-13 139-148 (164)
29 3dvk_B Voltage-dependent R-typ 20.4 58 0.002 13.0 1.5 13 32-44 10-22 (23)
No 1
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.65 E-value=2.7e-16 Score=111.19 Aligned_cols=57 Identities=51% Similarity=0.842 Sum_probs=53.6
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCD 57 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~~ 57 (59)
+|++|+||||||+++++.||++|+..+..+++.||+.||||++|++|.+++.++.|+
T Consensus 752 ~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~ 808 (837)
T 1kk8_A 752 EYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 808 (837)
T ss_dssp GEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999997776654
No 2
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.64 E-value=2.3e-16 Score=111.04 Aligned_cols=54 Identities=30% Similarity=0.594 Sum_probs=50.5
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~ 54 (59)
+|++|+||||||+++++.||++|+..+..+++.||+.||||++|++|.+++.+.
T Consensus 741 ~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 741 KYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp GEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ceEEcCceEEEchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999988754
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.55 E-value=1.1e-14 Score=104.93 Aligned_cols=56 Identities=29% Similarity=0.569 Sum_probs=52.1
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYC 56 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~ 56 (59)
+|++|+||||||+|+++.||++|+..+..+++.||+.||||++|++|.+++.+...
T Consensus 741 ~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~ 796 (1080)
T 2dfs_A 741 KYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAIT 796 (1080)
T ss_dssp GEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 58999999999999999999999999999999999999999999999998766443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.52 E-value=2.2e-14 Score=103.46 Aligned_cols=57 Identities=35% Similarity=0.568 Sum_probs=53.5
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCD 57 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~~ 57 (59)
+|++|+||||||+|+++.||++|+..+..+++.||+.||||++|++|.+++.+..|+
T Consensus 765 ~~~iG~TKVF~r~g~l~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~ 821 (1184)
T 1i84_S 765 LYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESI 821 (1184)
T ss_dssp TCCBCSSEEEECTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEcCeEEEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999998766654
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.46 E-value=4.4e-14 Score=101.75 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=50.7
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCD 57 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~~ 57 (59)
+|++|+||||||+++++.||++|+..+..+++.||+ +|||++|++|++++.+..++
T Consensus 748 ~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i 803 (1052)
T 4anj_A 748 DYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKR-VNHWLICSRWKKVQWCSLSV 803 (1052)
T ss_dssp GEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999997775 79999999999998776554
No 6
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=98.87 E-value=5.6e-09 Score=75.22 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=40.7
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYK 48 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~rg~~~r~~~~ 48 (59)
+|++|+||||||+++++.||++|+..+..+++.+|-..++........
T Consensus 736 ~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~a~~L~~WIr 783 (1010)
T 1g8x_A 736 QYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWIN 783 (1010)
T ss_dssp GEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999997666655444333
No 7
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=98.74 E-value=8.6e-09 Score=74.13 Aligned_cols=51 Identities=33% Similarity=0.459 Sum_probs=40.7
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHH
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGK----------------------------IVGWMQSYMRGYLSRKEYKKIQ 51 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~----------------------------~~~~iQ~~~rg~~~r~~~~~~~ 51 (59)
+|++|+||||||+++++.||++|+..+.. .+..+|+.++++..++...+.+
T Consensus 732 ~~~~G~tkVF~r~~~~~~LE~~R~~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekpp 810 (995)
T 2ycu_A 732 LYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPP 810 (995)
T ss_dssp SEEEESSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHHH
T ss_pred heeecceEEEEecchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 59999999999999999999999997763 2456777777777666665543
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=98.64 E-value=3.9e-08 Score=50.29 Aligned_cols=36 Identities=53% Similarity=0.821 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4661 23 RDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCDR 58 (59)
Q Consensus 23 r~~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~~~ 58 (59)
||+.++++++.+|+.+|||++|+.|.++..+..|++
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~ 36 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLS 36 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999988888763
No 9
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=98.57 E-value=1.6e-08 Score=71.49 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=34.2
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYL 42 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~rg~~ 42 (59)
+|++|+||||||+|+++.||++++......+. |++.+|+|+
T Consensus 744 ~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~-ii~~v~~wl 784 (784)
T 2v26_A 744 DYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAE-LVKRVNHWL 784 (784)
T ss_dssp GEEECSSEEEECTTCHHHHHHHHCCCHHHHHH-HHHHHHHHC
T ss_pred cEEeCCceEEEcCCHHHHHHHHHhhCHHHHHH-HHHHHHhhC
Confidence 59999999999999999999987776666666 557788884
No 10
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=98.41 E-value=3.1e-08 Score=69.96 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=17.4
Q ss_pred CcccccceeecccchHHHHHHHHHHHHHHHHH
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLGKIVG 32 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~~~~~ 32 (59)
+|++|+||||||+++++.||++|+..+..+++
T Consensus 736 ~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~~ 767 (770)
T 1w9i_A 736 QFRFGITKIFFRAGQLARIEEARELRGDYKDD 767 (770)
T ss_dssp CCCCCSSEEEECTTTTTC--------------
T ss_pred cEEeCCeeEEecccHHHHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999988775
No 11
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=98.35 E-value=8.4e-08 Score=67.89 Aligned_cols=28 Identities=54% Similarity=1.006 Sum_probs=22.3
Q ss_pred CcccccceeecccchHHHHHHHHHHHHH
Q psy4661 1 MVKWSHCTVFFRAGVLGQMEELRDDRLG 28 (59)
Q Consensus 1 ~~q~G~TKVF~r~~~~~~LE~~r~~~l~ 28 (59)
+|++|+||||||+|+++.||++|+..+.
T Consensus 755 ~~~~G~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 755 QYKFGHTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp GEEECSSEEEECTTHHHHHHHHC-----
T ss_pred eEEECCEEEEECcCHHHHHHHHHHHHhc
Confidence 5999999999999999999999998875
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.32 E-value=8.3e-07 Score=45.16 Aligned_cols=33 Identities=33% Similarity=0.662 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4661 26 RLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCDR 58 (59)
Q Consensus 26 ~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~~~ 58 (59)
.++++++.+|+.+|||++|+.|.++..+..|++
T Consensus 2 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~ 34 (63)
T 2bl0_A 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSAR 34 (63)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988888763
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.23 E-value=2.5e-06 Score=42.49 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4661 19 MEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCD 57 (59)
Q Consensus 19 LE~~r~~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~~ 57 (59)
+...+-..+..+++.||+.||||++|+.|..++....|+
T Consensus 19 ~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 19 LLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 333444455667788888888888888888888777665
No 14
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.19 E-value=1.2e-05 Score=39.93 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4661 25 DRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYCD 57 (59)
Q Consensus 25 ~~l~~~~~~iQ~~~rg~~~r~~~~~~~~~~~~~ 57 (59)
+.+..+++.||+.||||++|+.|.+++.+...|
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~I 34 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITV 34 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999998766543
No 15
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=98.10 E-value=3.4e-07 Score=64.14 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=21.3
Q ss_pred Ccccccceeeccc-chHHHHHHHHHHHH
Q psy4661 1 MVKWSHCTVFFRA-GVLGQMEELRDDRL 27 (59)
Q Consensus 1 ~~q~G~TKVF~r~-~~~~~LE~~r~~~l 27 (59)
+|++|+||||||+ ++++.||++|+..+
T Consensus 669 ~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 669 EIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp GEEECSSBEEESSSHHHHHHHTCC----
T ss_pred cEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 5999999999998 48999999999875
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.3e-05 Score=37.53 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4661 30 IVGWMQSYMRGYLSRKEYKKIQE 52 (59)
Q Consensus 30 ~~~~iQ~~~rg~~~r~~~~~~~~ 52 (59)
+++.||+.+||+++|+.|...+.
T Consensus 5 a~i~iQ~~~Rg~l~R~~~~~~~~ 27 (48)
T 1n2d_C 5 AIKYLQNNIKGFIIRQRVNDEMK 27 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666555555544
No 17
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00052 Score=32.60 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4661 28 GKIVGWMQSYMRGYLSRKEY 47 (59)
Q Consensus 28 ~~~~~~iQ~~~rg~~~r~~~ 47 (59)
..+++.||+.||||.+|+.|
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhh
Confidence 35899999999999999987
No 18
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.87 E-value=0.0016 Score=38.29 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4661 28 GKIVGWMQSYMRGYLSRKEYKKIQEQR 54 (59)
Q Consensus 28 ~~~~~~iQ~~~rg~~~r~~~~~~~~~~ 54 (59)
...++.||+.+|||++|++|.......
T Consensus 45 ~~~~i~iQktvR~~L~rkkhkPRi~g~ 71 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHKPRIDGL 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 366788999999999999999875554
No 19
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.34 E-value=0.005 Score=27.38 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4661 28 GKIVGWMQSYMRGYLSRKE 46 (59)
Q Consensus 28 ~~~~~~iQ~~~rg~~~r~~ 46 (59)
+-+++.||..||+|+.++.
T Consensus 6 e~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3578889999999999865
No 20
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.31 E-value=0.0034 Score=27.10 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4661 28 GKIVGWMQSYMRGYLSRK 45 (59)
Q Consensus 28 ~~~~~~iQ~~~rg~~~r~ 45 (59)
+.+++.||.+||+|+.++
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457889999999999874
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.25 E-value=0.049 Score=39.91 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4661 28 GKIVGWMQSYMRGYLSRKEYKKIQEQ 53 (59)
Q Consensus 28 ~~~~~~iQ~~~rg~~~r~~~~~~~~~ 53 (59)
..+++.||+.||||.+|+.|.+++.+
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~a 841 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMRDA 841 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566666666666666666665544
No 22
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=85.06 E-value=2.2 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4661 29 KIVGWMQSYMRGYLSRKEYKK 49 (59)
Q Consensus 29 ~~~~~iQ~~~rg~~~r~~~~~ 49 (59)
.+|..||.++|.|..|+....
T Consensus 131 ~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 131 VSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 578889999999999887655
No 23
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=80.34 E-value=2.9 Score=30.14 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4661 28 GKIVGWMQSYMRGYLSRKEYKKI 50 (59)
Q Consensus 28 ~~~~~~iQ~~~rg~~~r~~~~~~ 50 (59)
..+++.||+.+|+|++++.+.-+
T Consensus 805 r~a~~~IQ~~~R~~~~~r~~~w~ 827 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRNWQWW 827 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHcchHHH
Confidence 46788899999999999876543
No 24
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=46.15 E-value=28 Score=25.76 Aligned_cols=21 Identities=10% Similarity=0.168 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4661 28 GKIVGWMQSYMRGYLSRKEYK 48 (59)
Q Consensus 28 ~~~~~~iQ~~~rg~~~r~~~~ 48 (59)
..+++.||+.||+|+.++.|.
T Consensus 818 ~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 818 LESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 357788999999999987653
No 25
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=30.13 E-value=35 Score=13.79 Aligned_cols=21 Identities=14% Similarity=0.610 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4661 27 LGKIVGWMQSYMRGYLSRKEY 47 (59)
Q Consensus 27 l~~~~~~iQ~~~rg~~~r~~~ 47 (59)
++.++.-+|..+.|++-|.+-
T Consensus 2 isqaikylqnnikgfiirqrv 22 (26)
T 1m45_B 2 ISQAIKYLQNNIKGFIIRQRV 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhccceEEEeeec
Confidence 345566788899999888764
No 26
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=23.86 E-value=54 Score=13.89 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy4661 15 VLGQMEELRDDRLGKIVGWMQS 36 (59)
Q Consensus 15 ~~~~LE~~r~~~l~~~~~~iQ~ 36 (59)
....||+.-.+++-+.+..||=
T Consensus 3 ~w~kle~fW~khMwNfvSGIQY 24 (30)
T 2jxf_A 3 NWQKLEVFWAKHMWNFISGIQY 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998884
No 27
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=22.57 E-value=25 Score=19.84 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=7.9
Q ss_pred cccceeeccc
Q psy4661 4 WSHCTVFFRA 13 (59)
Q Consensus 4 ~G~TKVF~r~ 13 (59)
.||.||||=+
T Consensus 124 ~gKPKlffiQ 133 (146)
T 2dko_A 124 TGKPKLFIIQ 133 (146)
T ss_dssp TTSCEEEEEE
T ss_pred cCCCeEEEEE
Confidence 5899999853
No 28
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=21.37 E-value=27 Score=20.07 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=7.9
Q ss_pred cccceeeccc
Q psy4661 4 WSHCTVFFRA 13 (59)
Q Consensus 4 ~G~TKVF~r~ 13 (59)
.||.||||=+
T Consensus 139 ~gKPKlFfiQ 148 (164)
T 1qtn_A 139 AGKPKVFFIQ 148 (164)
T ss_dssp TTSCEEEEEE
T ss_pred cCCCeEEEEE
Confidence 5899999853
No 29
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=20.43 E-value=58 Score=13.01 Aligned_cols=13 Identities=8% Similarity=0.117 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q psy4661 32 GWMQSYMRGYLSR 44 (59)
Q Consensus 32 ~~iQ~~~rg~~~r 44 (59)
..||-.+|.+..+
T Consensus 10 llI~d~~r~~k~r 22 (23)
T 3dvk_B 10 MMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 3577777765543
Done!