RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4661
(59 letters)
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 43.9 bits (104), Expect = 5e-07
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEY-KKIQEQRYCDRN 59
VFF+AGVL +E++RD +L I +Q +RG R+ Y + ++ +
Sbjct: 726 VFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVI 777
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 36.0 bits (84), Expect = 3e-04
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 6 HCTVFFRAGVLGQMEELR 23
H VFFRAGVL +EE+R
Sbjct: 676 HTKVFFRAGVLAHLEEMR 693
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 29.4 bits (67), Expect = 0.067
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 9 VFFRAGVLGQMEELRD 24
VF R G L ++EELR+
Sbjct: 662 VFLRPGQLAELEELRE 677
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 29.1 bits (65), Expect = 0.089
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 6 HCTVFFRAGVLGQMEELR 23
H VFFRAGVL ++E R
Sbjct: 750 HSQVFFRAGVLSRLEAQR 767
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 28.4 bits (64), Expect = 0.12
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 9 VFFRAGVLGQMEELR 23
+FFRAG + +E+LR
Sbjct: 677 IFFRAGQVAFLEKLR 691
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 27.6 bits (62), Expect = 0.24
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 10 FFRAGVLGQMEELRD-DRLGKIVGWMQSYMRGYLSRKEYKKIQE 52
FRA +L Q + LRD DR W ++ G + +E ++I+
Sbjct: 463 LFRAIILDQFQRLRDGDRF-----WFENVKNGLFTAEEIEEIRN 501
>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif. Calmodulin-binding
motif.
Length = 21
Score = 25.4 bits (57), Expect = 0.35
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 34 MQSYMRGYLSRKEYK 48
+Q+ RGYL+RK YK
Sbjct: 7 IQAAWRGYLARKRYK 21
>gnl|CDD|221941 pfam13154, DUF3991, Protein of unknown function (DUF3991). This
family of proteins is often associated with family
Toprim, pfam01751.
Length = 76
Score = 26.4 bits (59), Expect = 0.46
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 25 DRLGKIVGWMQSYMRGYLSRKEYKKIQE 52
D GK+VG RG K +K I +
Sbjct: 37 DEDGKVVGAE---KRGTGEGKPFKGIAK 61
>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif. Short
calmodulin-binding motif containing conserved Ile and
Gln residues.
Length = 23
Score = 25.4 bits (57), Expect = 0.46
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 26 RLGKIVGWMQSYMRGYLSRKEYK 48
RL + +Q+ RGYL+RK YK
Sbjct: 1 RLTRAAIIIQAAWRGYLARKRYK 23
>gnl|CDD|218088 pfam04437, RINT1_TIP1, RINT-1 / TIP-1 family. This family includes
RINT-1, a Rad50 interacting protein which participates
in radiation induced checkpoint control, as well as the
TIP-1 protein from yeast that seems to be involved in a
complex with Sec20p that is required for golgi
transport.
Length = 483
Score = 24.6 bits (54), Expect = 3.4
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 21/69 (30%)
Query: 1 MVKWSHCTVFFRAGVLGQ-------------------MEELRDDRLGKIVGWMQSYMRGY 41
+ WS F + LG +E LR D G IV + +
Sbjct: 261 LKDWSDDVFFLQEASLGDIANRTSSSYGALFDETINSLERLRLDSEGSIVHRLVKGFKAA 320
Query: 42 LSRKEYKKI 50
L + Y KI
Sbjct: 321 L--RNYFKI 327
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.452
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,107,056
Number of extensions: 213033
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 10
Length of query: 59
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 28
Effective length of database: 9,562,628
Effective search space: 267753584
Effective search space used: 267753584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)